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1. vdjtools vdjtools Public

   [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data

   Groovy 142 42

2. migec migec Public

   A RepSeq processing swiss-knife

   Groovy 41 19

3. migmap migmap Public

   HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

   Groovy 53 19

4. antigenomics/vdjdb-db antigenomics/vdjdb-db Public

   🗂️ [vdjdb.cdr3.net server will undergo maintenance this December, web site may be unreachable!] Git-based TCR database storage & management. Submissions welcome!

   Python 147 26

5. oncofuse oncofuse Public

   Predicting oncogenic potential of gene fusions

   Groovy 12 4

6. mageri mageri Public

   MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

   Java 21 6