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Remove scaffold gap misassemblies from unique misassemblies in QUAST

bugSomething isn't workingSomething isn't working

Status: Open.

#211 In algbio/practical-omnitigs;

· sebschmi opened on Feb 17, 2021

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Integrate wtdbg2

Add option to heuristically compute the omnitigs of all SCCs

enhancementNew feature or requestNew feature or request

Status: Open.

#194 In algbio/practical-omnitigs;

· sebschmi opened on Dec 3, 2020

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Integrate wtdbg2

Output statistics about macronodes per omnitig and macronodes per macrotig

enhancementNew feature or requestNew feature or request

Status: Open.

#163 In algbio/practical-omnitigs;

· sebschmi opened on Sep 29, 2020

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Milestone A pipeline

Add runtime statistics to algorithms

enhancementNew feature or requestNew feature or request

Status: Open.

#158 In algbio/practical-omnitigs;

· sebschmi opened on Sep 25, 2020

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Milestone A pipeline

Implement command to convert the bcalm2 output into an efficient binary representation and make this usable in all other commands (except verify)

enhancementNew feature or requestNew feature or request

Status: Open.

#96 In algbio/practical-omnitigs;

· sebschmi opened on Aug 26, 2020

Check if input genome characters are valid

enhancementNew feature or requestNew feature or request

Status: Open.

#86 In algbio/practical-omnitigs;

· sebschmi opened on Aug 24, 2020

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Milestone A pipeline

Compute the DAG of SCCs and check if it is a path

enhancementNew feature or requestNew feature or request

Status: Open.

#81 In algbio/practical-omnitigs;

· sebschmi opened on Aug 24, 2020

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Connectivity checks and resolution

Print more detailed statistics about WCCs and SCCs

enhancementNew feature or requestNew feature or request

Status: Open.

#80 In algbio/practical-omnitigs;

· sebschmi opened on Aug 21, 2020

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Connectivity checks and resolution

Make decompose WCC method return a node mapping instead of a vector of graphs

enhancementNew feature or requestNew feature or request

Status: Open.

#78 In algbio/practical-omnitigs;

· sebschmi opened on Aug 20, 2020

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Connectivity checks and resolution

Why can there be an uneven amount of compactable unitigs?

questionFurther information is requestedFurther information is requested

Status: Open.

#60 In algbio/practical-omnitigs;

· sebschmi opened on Aug 7, 2020

Use petgraph traits whereever possible

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In algbio/practical-omnitigs;

· sebschmi opened on Jul 22, 2020

Add serde support for all datastructures

enhancementNew feature or requestNew feature or request

Status: Open.

#25 In algbio/practical-omnitigs;

· sebschmi opened on Jul 21, 2020