vz update conda yml

[vickimzhang]

Update conda yml file to include specific versions that work for Linux and windows.

Summary by CodeRabbit

• Chores

  • Package version bumped to 2.1.1 and environment spec upgraded to version 3.
  • Defaults channel added to environment sources.
  • Dependency set drastically reduced to three core packages, simplifying installation and speeding resolution.

• Removed

  • Two example spatial modules (transformations, datasheets and layouts) and their associated runtime steps were removed, reducing surface area and UI artifacts.

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[coderabbitai]

Walkthrough

Updated package version to 2.1.1 and bumped the transformer condaEnvVersion to 3. The conda environment file adds the defaults channel and reduces dependencies to three R packages. Four Spatial example files and their manifests were removed entirely.

Changes

Cohort / File(s)	Change Summary
Conda Environment Configuration src/helloworldR.yml	Added defaults channel to environment sources and reduced dependencies to three packages: r-base=4.1.3, r-rsyncrosim=2.1.7, r-terra=1.5_21 (removed previous extensive / conda-forge / Windows-specific deps).
Package Version and Metadata src/package.xml	Bumped package version from 2.1.0 to 2.1.1. Updated transformer firstModel attribute condaEnvVersion from 2 to 3.
Removed Spatial1 implementation helloworldSpatial1/model.R, helloworldSpatial1/package.xml	Deleted model.R (entire R transformation script) and package.xml manifest defining RunControl, InputDatasheet, IntermediateDatasheet, transformer, layouts and charts.
Removed Spatial2 implementation helloworldSpatial2/model2.R, helloworldSpatial2/package.xml	Deleted model2.R (entire R transformation script) and package.xml manifest defining OutputDatasheet, transformer, and layouts.

Pre-merge checks and finishing touches

✅ Passed checks (3 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title 'vz update conda yml' accurately describes the main change: updating the conda environment file (src/helloworldR.yml) with specific package versions for cross-platform compatibility.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

✨ Finishing touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Post copyable unit tests in a comment
• Commit unit tests in branch vz-update-conda-yml

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📜 Recent review details

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📥 Commits

Reviewing files that changed from the base of the PR and between 7c9dddc and f601584.

⛔ Files ignored due to path filters (1)

• helloworldSpatial2/templates/example-library.png is excluded by !**/*.png

📒 Files selected for processing (4)

• helloworldSpatial1/model.R (0 hunks)
• helloworldSpatial1/package.xml (0 hunks)
• helloworldSpatial2/model2.R (0 hunks)
• helloworldSpatial2/package.xml (0 hunks)

💤 Files with no reviewable changes (4)

• helloworldSpatial2/package.xml
• helloworldSpatial2/model2.R
• helloworldSpatial1/model.R
• helloworldSpatial1/package.xml

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[katieb1]

Would you also be able to remove the following folders from this repo:

The example library used to be the template library, but now we store these on S3.