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Description
The EBI has published a Unified Human Gastrointestinal Genome (UHGG) catalogue which includes a taxonomy of their genome clusters. When I try to load it with taxonomy it unfortunately fails. I wonder if the problem lies with taxonomy or EBI providing a bad format.
from taxonomy import Taxonomy
tax = Taxonomy.from_ncbi("taxonomy/nodes.dmp", "taxonomy/names.dmp")TaxonomyError: Error importing: Not enough fields in nodes.dmp; perhaps names and nodes files are switched?
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