Replace check command squeue -l with squeue --format

marinak-ebi · marinak-ebi · commit c0bbca459ab5 · 2024-03-14T16:00:27.000Z
diff --git a/Late adults stats pipeline/DRrequiredAgeing/DRrequiredAgeingPackage/R/sideFunctions.R b/Late adults stats pipeline/DRrequiredAgeing/DRrequiredAgeingPackage/R/sideFunctions.R
@@ -4515,7 +4515,7 @@ dictionary2listConvert = function(x) {
 }
 
 
-waitTillCommandFinish = function(checkcommand = 'squeue -l --Format Name',
+waitTillCommandFinish = function(checkcommand = 'squeue --format="%A %.30j"',
                                  WaitIfTheOutputContains = 'impc_stats_pipeline_job',
                                  WaitBeforeRetrySec = 60,
                                  ignoreline = 0,

Original file line number	Diff line number	Diff line change
`@@ -4515,7 +4515,7 @@ dictionary2listConvert = function(x) {`
`4515`	`4515`	`}`
`4516`	`4516`
`4517`	`4517`
`4518`		`-waitTillCommandFinish = function(checkcommand = 'squeue -l --Format Name',`
	`4518`	`+waitTillCommandFinish = function(checkcommand = 'squeue --format="%A %.30j"',`
`4519`	`4519`	`WaitIfTheOutputContains = 'impc_stats_pipeline_job',`
`4520`	`4520`	`WaitBeforeRetrySec = 60,`
`4521`	`4521`	`ignoreline = 0,`