diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json index 6b942de7e153..aa657e04552e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json +++ b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json @@ -1 +1 @@ -{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "modules": {"ABAQUS": [1, 1, 1, 1, 1, 1], "ABINIT": [0, 1, 1, 1, 1, 1], "ABRA2": [0, 1, 1, 1, 1, 1], "ABRicate": [0, 1, 1, 0, 1, 1], "ABySS": [1, 1, 1, 1, 1, 1], "ACTC": [0, 1, 1, 1, 1, 1], "ADMIXTURE": [0, 1, 1, 0, 1, 1], "AICSImageIO": [1, 1, 1, 1, 1, 1], "AMAPVox": [1, 1, 1, 0, 1, 1], "AMICA": [1, 1, 1, 1, 1, 1], "AMOS": [1, 1, 1, 1, 1, 1], "AMPtk": [1, 1, 1, 0, 1, 1], "ANTLR": [0, 1, 1, 0, 1, 1], "ANTs": [0, 1, 1, 0, 1, 1], "APR": [1, 1, 1, 0, 1, 1], "APR-util": [1, 1, 1, 0, 1, 1], "ARAGORN": [1, 1, 1, 0, 1, 1], "ASCAT": [1, 1, 1, 1, 1, 1], "ASE": [1, 1, 1, 1, 1, 1], 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a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json +++ b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json @@ -1 +1 @@ -{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "software": {"ABAQUS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ABAQUS/2023": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ABAQUS/2021-hotfix-2132": ["doduo", "donphan", "joltik", "skitty"], "ABAQUS/2022-hotfix-2214": ["doduo", "donphan", "joltik", "skitty"], "ABAQUS/2022": ["doduo", "donphan", "joltik", "skitty"]}}, "Abseil": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Abseil/20230125.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Abseil/20230125.3-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "ABySS": {"clusters": ["accelgor", "doduo", "donphan", 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"donphan", "joltik", "skitty"], "ArchR/1.0.2-foss-2023a-R-4.3.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "archspec": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"archspec/0.1.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "archspec/0.1.0-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "archspec/0.1.0-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "archspec/0.1.2-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "argtable": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"argtable/2.13-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "Armadillo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Armadillo/11.4.3-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Armadillo/12.6.2-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "arpack-ng": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"arpack-ng/3.8.0-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "arpack-ng/3.8.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "arpack-ng/3.8.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "arpack-ng/3.8.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "arpack-ng/3.9.0-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "arpack-ng/3.7.0-foss-2019b": ["doduo", "donphan", "joltik", "skitty"], "arpack-ng/3.7.0-intel-2020a": ["doduo", "donphan", "joltik", "skitty"]}}, "arrow-R": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"arrow-R/6.0.0.2-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "arrow-R/6.0.0.2-foss-2021b-R-4.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "arrow-R/8.0.0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "arrow-R/11.0.0.3-foss-2022b-R-4.2.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "arrow-R/14.0.0.2-foss-2023a-R-4.3.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "arrow-R/6.0.0.2-foss-2021a-R-4.1.0": ["doduo", "donphan", "joltik", "skitty"]}}, "Arrow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Arrow/6.0.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Arrow/8.0.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Arrow/11.0.0-gfbf-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Arrow/14.0.1-gfbf-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Arrow/0.16.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik"], "Arrow/0.17.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "Arrow/0.17.1-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "Arrow/0.17.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty"], "Arrow/6.0.0-foss-2021a": ["doduo", "donphan", "joltik", "skitty"], "Arrow/0.17.1-fosscuda-2020b": ["joltik"]}}, "ArviZ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ArviZ/0.11.4-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "ArviZ/0.12.1-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ArviZ/0.16.1-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ArviZ/0.7.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "ArviZ/0.7.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "ArviZ/0.11.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty"]}}, "ASCAT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ASCAT/3.1.2-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ASCAT/3.1.2-foss-2022b-R-4.2.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "ASE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ASE/3.20.1-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ASE/3.22.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "ASE/3.22.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ASE/3.22.1-gomkl-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ASE/3.22.1-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "ASE/3.22.1-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ASE/3.19.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", 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"joltik", "skitty"], "at-spi2-atk/2.34.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "at-spi2-core": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"at-spi2-core/2.38.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "at-spi2-core/2.40.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "at-spi2-core/2.40.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "at-spi2-core/2.44.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "at-spi2-core/2.46.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "at-spi2-core/2.49.90-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "at-spi2-core/2.34.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "ATK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ATK/2.36.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ATK/2.36.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "ATK/2.36.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ATK/2.38.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ATK/2.38.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ATK/2.38.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ATK/2.34.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "atools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"atools/1.5.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "atools/1.4.6-GCCcore-8.3.0-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty"]}}, "attr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"attr/2.5.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "attr/2.5.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "attrdict3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"attrdict3/2.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "AUGUSTUS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"AUGUSTUS/3.4.0-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "AUGUSTUS/3.4.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "AUGUSTUS/3.3.3-foss-2019b": ["doduo", "donphan", "joltik", "skitty"], "AUGUSTUS/3.3.3-intel-2019b": ["doduo", "donphan", "joltik", "skitty"]}}, "Autoconf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Autoconf/2.69-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autoconf/2.69-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autoconf/2.69-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autoconf/2.71-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autoconf/2.71-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autoconf/2.71-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autoconf/2.71-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autoconf/2.71-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autoconf/2.71-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autoconf/2.71": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autoconf/2.69-GCCcore-8.2.0": ["doduo"]}}, "AutoDock-Vina": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"AutoDock-Vina/1.2.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "Automake": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Automake/1.16.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Automake/1.16.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Automake/1.16.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Automake/1.16.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Automake/1.16.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Automake/1.16.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Automake/1.16.5-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Automake/1.16.5-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Automake/1.16.5-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Automake/1.16.5": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Automake/1.15.1-GCCcore-8.3.0": ["doduo", "skitty"], "Automake/1.16.1-GCCcore-8.2.0": ["doduo"]}}, "autopep8": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"autopep8/2.0.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Autotools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Autotools/20180311-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autotools/20180311-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autotools/20200321-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autotools/20210128-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autotools/20210726-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autotools/20220317-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autotools/20220317-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autotools/20220317-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autotools/20220317-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autotools/20220317": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Autotools/20180311-GCCcore-8.2.0": ["doduo"]}}, "Avogadro2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Avogadro2/1.97.0-linux-x86_64": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "awscli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"awscli/2.11.21-GCCcore-11.3.0": ["accelgor", "doduo", 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"c-ares/1.17.2-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "cairo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cairo/1.16.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "cairo/1.16.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cairo/1.16.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cairo/1.16.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cairo/1.16.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cairo/1.17.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cairo/1.17.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cairo/1.17.8-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Cantera": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cantera/2.6.0-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Cantera/3.0.0-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "canu": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"canu/2.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "canu/2.1.1-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty"], "canu/2.2-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty"], "canu/1.9-GCCcore-8.3.0-Java-11": ["donphan", "joltik"]}}, "CapnProto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CapnProto/0.9.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "CapnProto/1.0.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CapnProto/0.8.0-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "skitty"]}}, "Cartopy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cartopy/0.20.3-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Cartopy/0.20.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Cartopy/0.22.0-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Cartopy/0.18.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "Cartopy/0.19.0.post1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"], "Cartopy/0.19.0.post1-intel-2020b": ["doduo", "donphan", "joltik", "skitty"]}}, "Casanovo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Casanovo/3.3.0-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "Casanovo/3.3.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CASPR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CASPR/20200730-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CatBoost": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CatBoost/1.2-gfbf-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Catch2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Catch2/2.13.9-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Catch2/2.13.9-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Catch2/2.13.9-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CatLearn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CatLearn/0.6.2-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CatMAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CatMAP/20220519-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Cbc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cbc/2.10.5-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Cbc/2.10.11-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "ccache": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ccache/4.6.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CCL": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CCL/1.12.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "cctbx-base": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cctbx-base/2020.8-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cctbx-base/2020.8-fosscuda-2020b": ["accelgor", "joltik"], "cctbx-base/2023.5-foss-2022a": ["donphan", "joltik"]}}, "CD-HIT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CD-HIT/4.8.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "CD-HIT/4.8.1-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CD-HIT/4.8.1-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "CD-HIT/4.8.1-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty"], "CD-HIT/4.8.1-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"], "CD-HIT/4.8.1-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty"]}}, "CDBtools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CDBtools/0.99-GCC-10.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "cdo-bindings": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cdo-bindings/1.5.7-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CDO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CDO/1.9.10-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "CDO/2.0.5-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CDO/1.9.8-intel-2019b": ["doduo", "donphan", "joltik", "skitty"]}}, "cdsapi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"cdsapi/0.5.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "CellBender": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellBender/0.3.1-foss-2022a-CUDA-11.7.0": ["accelgor", "donphan", "joltik"], "CellBender/0.3.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CellOracle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellOracle/0.12.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Cellpose": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cellpose/2.2.2-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "Cellpose/2.2.2-foss-2022a": ["accelgor", "donphan", "gallade", "joltik", "skitty"]}}, "CellProfiler": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CellProfiler/4.2.4-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "CellRanger-ATAC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellRanger-ATAC/2.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CellRanger-ATAC/2.0.0": ["doduo", "donphan", "joltik"]}}, "CellRank": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellRank/2.0.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CellRank/1.4.0-foss-2021a": ["doduo", "donphan", "joltik", "skitty"]}}, "CellTypist": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellTypist/1.0.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "CellTypist/1.6.2-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CENSO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CENSO/1.2.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Cereal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cereal/1.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Ceres-Solver": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Ceres-Solver/2.2.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CESM-deps": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CESM-deps/2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "cffi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cffi/1.15.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cffi/1.15.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cffi/1.15.1-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CFITSIO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CFITSIO/3.49-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CFITSIO/4.1.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CFITSIO/4.2.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CFITSIO/4.2.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CFITSIO/4.3.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CFITSIO/3.47-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "CGAL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CGAL/4.14.1-foss-2019b-Python-3.7.4": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "CGAL/4.14.3-gompi-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CGAL/4.14.3-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CGAL/4.14.3-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CGAL/5.2-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CGAL/5.5.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CGAL/5.6-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CGAL/4.14.1-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty"], "CGAL/4.14.3-gompi-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "CGAL/4.14.3-iimpi-2021a": ["doduo", "donphan", "joltik", "skitty"], "CGAL/5.2-iimpi-2020b": ["doduo"]}}, "Cgl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cgl/0.60.7-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Cgl/0.60.8-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CharLS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CharLS/2.4.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Check": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Check/0.15.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CheckM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CheckM/1.1.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "CheckM/1.0.18-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty"], "CheckM/1.1.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "CheckM/1.1.2-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "CheckM/1.1.3-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"]}}, "chemprop": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"chemprop/1.5.2-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "chemprop/1.5.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CheMPS2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CheMPS2/1.8.12-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CheMPS2/1.8.12-foss-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Chimera": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Chimera/1.16-linux_x86_64": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "cicero": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cicero/1.3.8-foss-2022a-R-4.2.1-Monocle3": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cicero/1.3.4.11-foss-2020b-R-4.0.3-Monocle3": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "cimfomfa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cimfomfa/22.273-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CIRCexplorer2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CIRCexplorer2/2.3.8-foss-2021b-Python-2.7.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CIRCexplorer2/2.3.8-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Circlator": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Circlator/1.5.5-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Circuitscape": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Circuitscape/5.12.3-Julia-1.7.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CIRIquant": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CIRIquant/1.1.2-20221201-foss-2021b-Python-2.7.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Clair3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Clair3/1.0.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Clang": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Clang/9.0.1-GCC-8.3.0-CUDA-10.1.243": ["accelgor", "joltik"], "Clang/12.0.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Clang/12.0.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Clang/13.0.1-GCCcore-11.3.0-CUDA-11.7.0": ["accelgor", "donphan", "joltik"], "Clang/13.0.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Clang/15.0.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Clang/16.0.6-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Clang/9.0.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "Clang/10.0.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty"], "Clang/11.0.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"], "Clang/11.0.1-gcccuda-2020b": ["joltik"]}}, "CLEAR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CLEAR/20210117-foss-2021b-Python-2.7.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CLHEP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CLHEP/2.4.4.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CLHEP/2.4.5.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CLHEP/2.4.5.3-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CLHEP/2.4.6.4-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CLHEP/2.4.1.3-foss-2019b": ["doduo", "donphan", "joltik", "skitty"]}}, "Clp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Clp/1.17.7-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Clp/1.17.8-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Clp/1.17.9-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Clustal-Omega": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Clustal-Omega/1.2.4-GCC-10.3.0": 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{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Compress-Raw-Zlib/2.202-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "conan": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"conan/1.58.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "conan/1.60.2-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Concorde": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Concorde/20031219-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "configurable-http-proxy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"configurable-http-proxy/4.5.5-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "cooler": {"clusters": ["accelgor", "doduo", "donphan", "gallade", 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{"CSBDeep/0.7.4-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "CSBDeep/0.7.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CUDA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CUDA/10.1.243-GCC-8.3.0": ["accelgor", "joltik"], "CUDA/11.1.1-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CUDA/11.3.1": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "CUDA/11.4.1": ["accelgor", "joltik"], "CUDA/11.7.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CUDA/12.1.1": ["accelgor", "donphan", "joltik"], "CUDA/10.1.243-iccifort-2019.5.281": ["joltik"], "CUDA/11.0.2-iccifort-2020.1.217": ["joltik"], "CUDA/11.1.1-iccifort-2020.4.304": ["joltik"]}}, "CUDAcore": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CUDAcore/11.1.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "CUDAcore/11.2.1": 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["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cURL/7.66.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cURL/7.69.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cURL/7.72.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cURL/7.76.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cURL/7.78.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cURL/7.83.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cURL/7.86.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cURL/8.0.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cURL/8.3.0-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cURL/7.63.0-GCCcore-8.2.0": ["doduo"]}}, "cutadapt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cutadapt/3.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "cutadapt/4.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "cutadapt/1.18-GCC-10.2.0-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty"], "cutadapt/1.18-GCCcore-8.3.0-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty"], "cutadapt/1.18-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "cutadapt/2.7-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "cutadapt/2.10-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "cutadapt/3.4-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "cuteSV": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cuteSV/2.0.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "CVXOPT": {"clusters": 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{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dicom2nifti/2.3.0-fosscuda-2020b": ["accelgor", "joltik"], "dicom2nifti/2.3.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "dill": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dill/0.3.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "dill/0.3.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "dill/0.3.6-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "dill/0.3.7-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "dill/0.3.7-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "dill/0.3.3-GCCcore-9.3.0": ["doduo", "donphan", "skitty"], "dill/0.3.3-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "dm-haiku": {"clusters": ["accelgor", "joltik"], "versions": {"dm-haiku/0.0.9-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"]}}, "dm-tree": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dm-tree/0.1.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "dm-tree/0.1.6-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "dm-tree/0.1.8-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "dm-tree/0.1.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "dorado": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"dorado/0.1.1-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "dorado/0.3.0-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "dorado/0.3.1-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "dorado/0.5.1-foss-2022a-CUDA-11.7.0": ["accelgor", "donphan", "joltik"]}}, "double-conversion": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"double-conversion/3.1.4-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "double-conversion/3.1.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "double-conversion/3.1.5-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "double-conversion/3.1.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "double-conversion/3.2.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "double-conversion/3.2.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "double-conversion/3.3.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "double-conversion/3.1.5-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "DoubletFinder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DoubletFinder/2.0.3-20230131-foss-2022a-R-4.2.1": ["accelgor", 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"gallade", "joltik", "skitty"], "duplex-tools/0.3.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "DyMat": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"DyMat/0.7-foss-2021b-2020-12-12": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "dynesty": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dynesty/2.1.3-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "EasyBuild": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EasyBuild/4.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.2.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.3.1": ["accelgor", "doduo", "donphan", 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"donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.6.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.6.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.6.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.7.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.7.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.8.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.8.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EasyBuild/4.9.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "ebGSEA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ebGSEA/0.1.0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "ecCodes": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ecCodes/2.22.1-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "ecCodes/2.24.2-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "ecCodes/2.15.0-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty"]}}, "EDirect": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EDirect/20.5.20231006-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "edlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"edlib/1.3.9-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "edlib/1.3.9-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "edlib/1.3.9-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "edlib/1.3.8.post1-GCC-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "edlib/1.3.8.post1-GCC-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "edlib/1.3.8.post1-iccifort-2019.5.281-Python-3.7.4": ["doduo", "donphan", "joltik"], "edlib/1.3.8.post2-iccifort-2020.1.217-Python-3.8.2": ["doduo", "donphan", "joltik"], "edlib/1.3.9-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "eggnog-mapper": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"eggnog-mapper/2.1.10-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "eggnog-mapper/2.1.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Eigen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Eigen/3.3.7-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Eigen/3.3.7": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Eigen/3.3.8-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Eigen/3.3.9-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Eigen/3.3.9-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Eigen/3.4.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Eigen/3.4.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Eigen/3.4.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Eigen/3.4.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Eigen/3.4.0-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Eigen/3.3.9-GCCcore-10.2.0": ["donphan", "gallade", "joltik", "skitty"]}}, "einops": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"einops/0.4.1-GCCcore-10.3.0": ["accelgor", "donphan", "joltik"], "einops/0.4.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "elfutils": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"elfutils/0.185-GCCcore-8.3.0": ["accelgor", "joltik"], "elfutils/0.185-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "elfutils/0.185-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "elfutils/0.187-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "elfutils/0.183-GCCcore-10.2.0": ["donphan", "gallade", "joltik"]}}, "ELPA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ELPA/2021.05.001-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "ELPA/2021.05.001-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "ELPA/2019.11.001-foss-2019b": ["doduo", "donphan", "joltik", "skitty"], "ELPA/2019.11.001-intel-2019b": ["doduo", "donphan", "joltik", "skitty"], "ELPA/2020.11.001-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"], "ELPA/2021.05.001-intel-2021a": ["doduo", "donphan", "joltik", "skitty"]}}, "EMBOSS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"EMBOSS/6.6.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "EMBOSS/6.6.0-GCC-8.3.0-Java-11": ["doduo", "donphan", "joltik", "skitty"]}}, "enchant-2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"enchant-2/2.3.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "epiScanpy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"epiScanpy/0.4.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "epiScanpy/0.3.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty"]}}, "EpiSCORE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EpiSCORE/0.9.5-20220621-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "ESM-2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ESM-2/2.0.0-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "ESM-2/2.0.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "ESMF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ESMF/8.2.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "ESMF/8.0.0-intel-2019b": ["doduo", "donphan", "joltik", "skitty"], "ESMF/8.0.1-foss-2020a": ["doduo", "donphan", "joltik", "skitty"], "ESMF/8.0.1-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"], "ESMF/8.1.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty"]}}, "ETE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ETE/3.1.2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "ETE/3.1.3-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "EUKulele": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EUKulele/2.0.6-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "EUKulele/1.0.4-foss-2020b": ["doduo", "donphan", "joltik", "skitty"]}}, "exiv2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"exiv2/0.27.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "exiv2/0.27.4-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "Exonerate": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Exonerate/2.4.0-GCC-10.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Exonerate/2.4.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Exonerate/2.4.0-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Exonerate/2.4.0-GCC-8.3.0": ["doduo", "donphan", "joltik"], "Exonerate/2.4.0-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty"]}}, "expat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"expat/2.2.7-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expat/2.2.9-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expat/2.2.9-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expat/2.2.9-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expat/2.4.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expat/2.4.8-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expat/2.4.9-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expat/2.5.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expat/2.5.0-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expat/2.2.6-GCCcore-8.2.0": ["doduo"]}}, "expecttest": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"expecttest/0.1.3-GCCcore-10.2.0": ["accelgor"], "expecttest/0.1.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expecttest/0.1.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expecttest/0.1.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expecttest/0.1.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "expecttest/0.1.5-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "ExtremeLy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ExtremeLy/2.3.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Faiss": {"clusters": ["accelgor", "joltik"], "versions": {"Faiss/1.7.2-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"]}}, "fasta-reader": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fasta-reader/3.0.2-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "FASTA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FASTA/36.3.8i-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "fastahack": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fastahack/1.0.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "fastahack/1.0.0-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty"]}}, "fastai": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fastai/2.7.10-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "FastANI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FastANI/1.33-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "FastANI/1.33-intel-compilers-2021.4.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "FastANI/1.34-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "FastANI/1.3-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty"], "FastANI/1.31-iccifort-2020.1.217": ["doduo", "donphan", "joltik", "skitty"], "FastANI/1.33-GCC-10.2.0": ["doduo", "donphan", "joltik"], "FastANI/1.33-iccifort-2020.4.304": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Fastaq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Fastaq/3.17.0-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "FastME": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FastME/2.1.6.3-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "FastME/2.1.6.1-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "FastME/2.1.6.1-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"], "FastME/2.1.6.1-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty"]}}, "fastp": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"fastp/0.23.2-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "fastp/0.20.0-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "fastp/0.20.0-iccifort-2019.5.281": ["doduo"], "fastp/0.20.1-iccifort-2020.1.217": ["doduo", "donphan", "joltik"]}}, "FastQ_Screen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FastQ_Screen/0.14.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "FastQC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", 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["doduo", "donphan", "joltik", "skitty"]}}, "FDS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FDS/6.7.7-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "FDS/6.7.9-intel-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "FDS/6.8.0-intel-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "FDS/6.7.4-intel-2020a": ["doduo", "donphan", "joltik", "skitty"], "FDS/6.7.5-intel-2020a": ["doduo", "donphan", "joltik", "skitty"], "FDS/6.7.6-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"], "FDS/6.7.5-intel-2020b": ["donphan", "joltik"]}}, "FFAVES": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FFAVES/2022.11.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "FFmpeg": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FFmpeg/4.2.1-GCCcore-8.3.0": ["accelgor", 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{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FragGeneScan/1.31-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "FragGeneScan/1.31-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "FragGeneScan/1.31-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "FreeBarcodes": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"FreeBarcodes/3.0.a5-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "freeglut": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"freeglut/3.2.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "freeglut/3.2.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "freeglut/3.2.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "freeglut/3.2.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", 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{"Gurobi/9.5.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Gurobi/9.5.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Gurobi/11.0.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Gurobi/9.1.0": ["doduo", "donphan", "joltik"], "Gurobi/9.1.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "GUSHR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GUSHR/2020-09-28-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "gzip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gzip/1.10-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "gzip/1.10-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "gzip/1.10-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], 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"doduo", "donphan", "gallade", "joltik", "skitty"]}}, "hifiasm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hifiasm/0.19.7-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "HighFive": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HighFive/2.7.1-gompi-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Highway": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Highway/1.0.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Highway/1.0.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Highway/1.0.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Highway/1.0.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "hiredis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hiredis/1.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "HISAT2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HISAT2/2.2.1-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "HISAT2/2.2.1-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "HISAT2/2.2.1-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "histolab": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"histolab/0.4.1-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "histolab/0.4.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "HMMER": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HMMER/3.3.2-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], 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{"libgpuarray/0.7.6-fosscuda-2020b": ["accelgor", "joltik"]}}, "libharu": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"libharu/2.3.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "libharu/2.3.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "libharu/2.3.0-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "libheif": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libheif/1.12.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "libheif/1.16.2-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "libiconv": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libiconv/1.16-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "libiconv/1.16-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "libiconv/1.16-GCCcore-10.2.0": ["accelgor", 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"loomR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"loomR/0.2.0-20180425-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "loomR/0.2.0-20180425-foss-2022b-R-4.2.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "loomR/0.2.0-20180425-foss-2023a-R-4.3.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "LoRDEC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LoRDEC/0.9-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "louvain": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"louvain/0.8.0-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "lpsolve": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"lpsolve/5.5.2.11-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", 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{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"M4/1.4.17": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "M4/1.4.18-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "M4/1.4.18-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "M4/1.4.18-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "M4/1.4.18-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "M4/1.4.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "M4/1.4.19-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "M4/1.4.19-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "M4/1.4.19-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "M4/1.4.19-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], 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"MEGAHIT/1.2.9-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "MEGAHIT/1.2.9-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "MEGAHIT/1.2.9-GCCcore-10.2.0-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Megalodon": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Megalodon/2.3.5-fosscuda-2020b": ["accelgor", "joltik"], "Megalodon/2.3.5-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "MEGAN": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MEGAN/6.25.3-Java-17": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "MEME": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MEME/5.4.1-gompi-2021b-Python-2.7.18": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "MEME/5.5.4-gompi-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Mercurial": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Mercurial/6.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "Mesa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Mesa/19.1.7-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Mesa/20.2.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Mesa/21.1.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Mesa/21.1.7-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Mesa/22.0.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Mesa/22.2.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Mesa/23.1.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Mesa/19.0.1-GCCcore-8.2.0": ["doduo"], "Mesa/19.2.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "Mesa/20.0.2-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "meson-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"meson-python/0.13.2-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "meson-python/0.15.0-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Meson": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Meson/0.55.1-GCCcore-9.3.0-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Meson/0.55.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Meson/0.58.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Meson/0.58.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Meson/0.59.1-GCCcore-8.3.0-Python-3.7.4": 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"gallade", "joltik", "skitty"], "versions": {"MetaEuk/6-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "MetaEuk/4-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "MetaPhlAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MetaPhlAn/4.0.6-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "methylpy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"methylpy/1.2.9-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "METIS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"METIS/5.1.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "METIS/5.1.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "METIS/5.1.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "METIS/5.1.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "METIS/5.1.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "METIS/5.1.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "METIS/5.1.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "METIS/5.1.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "mgen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mgen/1.2.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "mgltools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mgltools/1.5.7": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "MIGRATE-N": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MIGRATE-N/5.0.4-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "Mikado": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Mikado/2.3.4-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Miniconda3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Miniconda3/22.11.1-1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Miniconda3/23.5.2-0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Miniconda3/4.8.3": ["doduo", "donphan", "joltik", "skitty"], "Miniconda3/4.9.2": ["doduo", "donphan", "joltik", "skitty"], "Miniconda3/4.7.10": ["skitty"]}}, "minimap2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"minimap2/2.20-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "minimap2/2.22-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "minimap2/2.24-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "minimap2/2.24-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "minimap2/2.26-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "minimap2/2.26-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "minimap2/2.17-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "minimap2/2.17-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty"], "minimap2/2.18-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"], "minimap2/2.20-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty"]}}, "Minipolish": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Minipolish/0.1.3-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "minizip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"minizip/1.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "MinPath": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MinPath/1.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "MinPath/1.4-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty"]}}, "MitoHiFi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MitoHiFi/3.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "MiXCR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MiXCR/4.6.0-Java-17": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "MiXCR/3.0.13-Java-11": ["doduo", "donphan", "joltik"]}}, "mkl-service": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mkl-service/2.3.0-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "mkl-service/2.3.0-intel-2019b-Python-3.7.4": ["donphan", "joltik", "skitty"], "mkl-service/2.3.0-intel-2020b": ["donphan", "joltik", "skitty"]}}, "MMseqs2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MMseqs2/13-45111-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "MMseqs2/13-45111-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "MMseqs2/13-45111-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "MMseqs2/14-7e284-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "MMseqs2/14-7e284-gompi-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "MMseqs2/10-6d92c-gompi-2019b": ["doduo", "donphan", "joltik", "skitty"], "MMseqs2/10-6d92c-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty"], "MMseqs2/11-e1a1c-iimpi-2019b": ["doduo", "skitty"], "MMseqs2/12-113e3-gompi-2020b": ["doduo"], "MMseqs2/13-45111-20211006-gompi-2020b": ["doduo", "donphan", "gallade", "joltik"], "MMseqs2/13-45111-20211019-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "ModelTest-NG": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"ModelTest-NG/0.1.7-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "Molekel": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Molekel/5.4.0-Linux_x86_64": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "molmod": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"molmod/1.4.5-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "molmod/1.4.5-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "molmod/1.4.5-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"]}}, "MONAI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MONAI/1.0.1-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "MONAI/1.0.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Monocle3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Monocle3/1.3.1-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Monocle3/0.2.3-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "MOOSE": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MOOSE/2022-06-10-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "MOOSE/2021-05-18-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"]}}, "mosdepth": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mosdepth/0.3.3-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "mpath": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mpath/1.1.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "MPC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": 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{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nanoget/1.18.1-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "nanoget/1.18.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "nanoget/1.12.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "nanoget/1.15.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty"]}}, "nanomath": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nanomath/1.2.1-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "nanomath/1.3.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "nanomath/0.23.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "nanomath/1.2.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty"]}}, "nanopolish": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": 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["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "NECI/20220711-foss-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "netCDF-C++4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"netCDF-C++4/4.3.1-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "netCDF-C++4/4.3.1-gompi-2020a": ["doduo", "donphan", "joltik", "skitty"], "netCDF-C++4/4.3.1-gompi-2021a": ["doduo", "donphan", "joltik", "skitty"], "netCDF-C++4/4.3.1-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty"], "netCDF-C++4/4.3.1-iimpi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "netCDF-Fortran": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"netCDF-Fortran/4.5.3-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "netCDF-Fortran/4.5.3-iimpi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "netCDF-Fortran/4.6.0-gompi-2022a": 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["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"rclone/1.65.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "RDFlib": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"RDFlib/6.2.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "RDFlib/4.2.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "RDFlib/5.0.0-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty"]}}, "RDKit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RDKit/2022.03.5-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "RDKit/2022.09.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "RDKit/2020.03.3-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "RDKit/2020.09.3-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"]}}, "RDP-Classifier": {"clusters": ["accelgor", "doduo", "donphan", 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"scvi-tools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scvi-tools/0.16.4-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "scvi-tools/0.16.4-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "SDL2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SDL2/2.0.20-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "SDL2/2.26.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "SDL2/2.28.2-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "SDL2/2.0.14-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"], "SDL2/2.0.14-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "Seaborn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Seaborn/0.11.1-fosscuda-2020b": ["accelgor", "joltik"], "Seaborn/0.11.2-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Seaborn/0.11.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Seaborn/0.12.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Seaborn/0.12.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Seaborn/0.13.2-gfbf-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Seaborn/0.9.1-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty"], "Seaborn/0.10.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "Seaborn/0.10.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "Seaborn/0.10.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "Seaborn/0.10.1-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "Seaborn/0.10.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty"], "Seaborn/0.11.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"], "Seaborn/0.11.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty"]}}, "SEACells": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SEACells/20230731-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "segemehl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"segemehl/0.3.4-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "segemehl/0.3.4-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "SELFIES": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SELFIES/2.1.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "SemiBin": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SemiBin/2.0.2-foss-2022a-CUDA-11.7.0": ["accelgor", "donphan", "joltik"], "SemiBin/2.0.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "semla": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"semla/1.1.6-foss-2023a-R-4.3.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Sentence-Transformers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Sentence-Transformers/2.2.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "SentencePiece": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SentencePiece/0.1.96-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "SentencePiece/0.1.97-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "SentencePiece/0.1.99-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "SentencePiece/0.1.85-GCC-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik"]}}, "SEPP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SEPP/4.5.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "SEPP/4.5.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "SEPP/4.3.10-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "SEPP/4.4.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "SeqAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SeqAn/2.4.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "SeqAn/2.4.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "SeqAn/2.4.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "seqtk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"seqtk/1.3-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "seqtk/1.4-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "seqtk/1.3-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "seqtk/1.3-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Serf": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Serf/1.3.9-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "setuptools-rust": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"setuptools-rust/1.6.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "setuptools-rust/1.8.0-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "setuptools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"setuptools/64.0.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Seurat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Seurat/4.2.0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Seurat/4.3.0-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Seurat/4.3.0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Seurat/3.1.5-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty"], "Seurat/4.0.1-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "SeuratDisk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SeuratDisk/0.0.0.9020-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "SHAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SHAP/0.41.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "SHAP/0.42.1-foss-2019b-Python-3.7.4": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "Shapely": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Shapely/1.8a1-GCC-10.3.0": ["accelgor", "joltik"], "Shapely/1.8.1.post1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Shapely/1.8.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Shapely/1.8.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Shapely/2.0.1-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Shapely/2.0.1-gfbf-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Shapely/1.7.0-iccifort-2019.5.281-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "Shapely/1.7.1-GCC-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"], "Shapely/1.8a1-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"], "Shapely/1.8a1-iccifort-2020.4.304": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Short-Pair": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Short-Pair/20170125-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "shovill": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"shovill/1.1.0-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "silhouetteRank": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"silhouetteRank/1.0.5.13-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "SimPEG": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SimPEG/0.18.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "SimPEG/0.18.1-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "SimPEG/0.14.1-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"]}}, "SimpleITK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SimpleITK/2.1.0-fosscuda-2020b": ["accelgor", "joltik"], "SimpleITK/2.1.1.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "SimpleITK/1.2.4-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "SimpleITK/2.1.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "SISSO++": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SISSO++/1.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "SISSO": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SISSO/3.0.2-iimpi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "SISSO/3.1-20220324-iimpi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "SKESA": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SKESA/2.4.0-gompi-2021b_saute.1.3.0_1": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "SlamDunk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SlamDunk/0.4.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "SLEPc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SLEPc/3.17.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "SLEPc/3.18.2-intel-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "SLEPc/3.12.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "SLEPc/3.12.2-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty"], "SLEPc/3.15.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty"], "SLEPc/3.12.2-intel-2019b-Python-3.7.4": ["donphan", "joltik"]}}, "slepc4py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"slepc4py/3.17.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "slepc4py/3.12.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"], "slepc4py/3.15.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty"]}}, "slow5tools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"slow5tools/0.4.0-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "slurm-drmaa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"slurm-drmaa/1.1.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "SMAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SMAP/4.6.5-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "SMC++": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SMC++/1.15.4-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "smfishHmrf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"smfishHmrf/1.3.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "smithwaterman": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"smithwaterman/20160702-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "smithwaterman/20160702-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty"]}}, "smooth-topk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "smooth-topk/1.0-20210817-foss-2021a": ["doduo", "donphan", "joltik", "skitty"]}}, "snakemake": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"snakemake/6.10.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "snakemake/7.18.2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "snakemake/7.22.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "snakemake/7.32.3-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "snakemake/8.4.2-foss-2023a": ["accelgor", "doduo", "donphan", 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"donphan", "joltik", "skitty"]}}, "TRF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TRF/4.09.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "TRF/4.09.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "TRF/4.09.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "TRF/4.09-linux64": ["skitty"]}}, "trimAl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"trimAl/1.4.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "trimAl/1.4.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Trimmomatic": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Trimmomatic/0.39-Java-11": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Trimmomatic/0.38-Java-1.8": ["skitty"]}}, "Trinity": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Trinity/2.15.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Trinity/2.8.5-GCC-8.3.0-Java-11": ["doduo", "donphan", "joltik", "skitty"], "Trinity/2.9.1-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty"], "Trinity/2.10.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"]}}, "TRUST4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"TRUST4/1.0.6-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "TurboVNC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TurboVNC/2.2.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "TurboVNC/2.2.3-GCCcore-8.2.0": ["doduo"]}}, "typing-extensions": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"typing-extensions/3.7.4.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "typing-extensions/3.10.0.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "typing-extensions/3.10.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "typing-extensions/4.3.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "typing-extensions/4.8.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "typing-extensions/4.9.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "typing-extensions/4.9.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "UCC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UCC/1.0.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCC/1.1.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCC/1.2.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCC/1.2.0-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "UCX-CUDA": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"UCX-CUDA/1.10.0-GCCcore-10.3.0-CUDA-11.3.1": ["accelgor", "joltik"], "UCX-CUDA/1.11.2-GCCcore-11.2.0-CUDA-11.4.1": ["accelgor", "joltik"], "UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0": ["accelgor", "donphan", "joltik"], "UCX-CUDA/1.14.1-GCCcore-12.3.0-CUDA-12.1.1": ["accelgor", "donphan", "joltik"]}}, "UCX": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UCX/1.8.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCX/1.9.0-GCCcore-10.2.0-CUDA-11.1.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCX/1.9.0-GCCcore-10.2.0-CUDA-11.2.1": ["accelgor", "donphan", "joltik"], "UCX/1.9.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCX/1.10.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCX/1.11.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCX/1.12.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCX/1.13.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCX/1.14.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCX/1.15.0-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UCX/1.6.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "UDUNITS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UDUNITS/2.2.26-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UDUNITS/2.2.28-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UDUNITS/2.2.28-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UDUNITS/2.2.28-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UDUNITS/2.2.28-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UDUNITS/2.2.28-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UDUNITS/2.2.26-foss-2020a": ["doduo", "donphan", "joltik", "skitty"], "UDUNITS/2.2.26-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty"], "UDUNITS/2.2.26-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "umap-learn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"umap-learn/0.5.3-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "umap-learn/0.5.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "umap-learn/0.5.5-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "umap-learn/0.4.6-fosscuda-2020b": ["joltik"]}}, "uncertainties": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"uncertainties/3.1.7-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "uncertainty-calibration": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"uncertainty-calibration/0.0.9-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "Unidecode": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Unidecode/1.3.6-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Unidecode/1.1.1-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty"]}}, "UniFrac": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UniFrac/1.3.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "unixODBC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"unixODBC/2.3.11-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "UnZip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UnZip/6.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UnZip/6.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UnZip/6.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UnZip/6.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UnZip/6.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UnZip/6.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UnZip/6.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "UnZip/6.0-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "USEARCH": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"USEARCH/11.0.667-i86linux32": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "utf8proc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"utf8proc/2.6.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "utf8proc/2.7.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "utf8proc/2.8.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "utf8proc/2.8.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "util-linux": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"util-linux/2.34-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "util-linux/2.35-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "util-linux/2.36-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "util-linux/2.36-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "util-linux/2.37-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "util-linux/2.38-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "util-linux/2.38.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "util-linux/2.39-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "util-linux/2.33-GCCcore-8.2.0": ["doduo"]}}, "vaeda": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"vaeda/0.0.30-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "Valgrind": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Valgrind/3.17.0-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Valgrind/3.18.1-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Valgrind/3.18.1-iimpi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Valgrind/3.19.0-gompi-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "Valgrind/3.20.0-gompi-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "VarScan": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"VarScan/2.4.4-Java-11": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "VASP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VASP/5.4.4-iomkl-2020b-vtst-176-mt-20180516": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.2.1-NVHPC-21.2-CUDA-11.2.1": ["accelgor", "joltik"], "VASP/6.3.1-gomkl-2021a-VASPsol-20210413-vtst-184-Wannier90-3.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.3.1-NVHPC-21.2-CUDA-11.2.1": ["accelgor", "joltik"], "VASP/6.4.1-NVHPC-21.2-CUDA-11.2.1": ["accelgor", "donphan", "joltik"], "VASP/6.4.2-foss-2023a-VASPsol-20210413-vtst-197-Wannier90-3.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.4.2-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.4.2-gomkl-2023a-VASPsol-20210413-vtst-197-Wannier90-3.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.4.2-gomkl-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.4.2-NVHPC-21.2-CUDA-11.2.1": ["accelgor", "donphan", "joltik"], "VASP/5.4.4-intel-2019b-mt-20180516-ncl": ["doduo", "donphan", "joltik", "skitty"], "VASP/5.4.4-intel-2019b-mt-20180516": ["doduo", "donphan", "joltik", "skitty"], "VASP/6.1.2-foss-2020a": ["doduo", "donphan", "joltik", "skitty"], "VASP/6.1.2-gomkl-2020a": ["doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.1.2-intel-2020a": ["doduo", "donphan", "joltik", "skitty"], "VASP/6.2.0-foss-2020a": ["doduo", "donphan", "joltik", "skitty"], "VASP/6.2.0-gomkl-2020a": ["doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.2.0-intel-2020a": ["doduo", "donphan", "joltik", "skitty"], "VASP/6.2.1-gomkl-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.3.0-gomkl-2021a-VASPsol-20210413": ["doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.3.1-gomkl-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.4.1-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0": ["doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.4.1-gomkl-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.4.2-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0": ["doduo", "donphan", "gallade", "joltik", "skitty"], "VASP/6.4.2-gomkl-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "VBZ-Compression": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VBZ-Compression/1.0.3-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "VBZ-Compression/1.0.1-gompi-2020b": ["donphan", "gallade", "joltik", "skitty"]}}, "vcflib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"vcflib/1.0.9-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "vcflib/1.0.2-GCC-10.2.0": ["doduo", "donphan", "joltik", "skitty"]}}, "vConTACT2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"vConTACT2/0.11.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "velocyto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"velocyto/0.17.17-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "velocyto/0.17.17-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"]}}, "Velvet": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Velvet/1.2.10-foss-2023a-mt-kmer_191": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Velvet/1.2.10-GCC-11.2.0-mt-kmer_191": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "Velvet/1.2.10-GCC-8.3.0-mt-kmer_191": ["doduo", "donphan", "joltik", "skitty"]}}, "VEP": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"VEP/105-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "VEP/107-GCC-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "VESTA": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"VESTA/3.5.8-gtk3": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "VirSorter2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VirSorter2/2.2.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "virtualenv": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", 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"Zopfli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Zopfli/1.0.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "zstd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zstd/1.4.4-GCCcore-8.3.0": ["accelgor", "joltik"], "zstd/1.4.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "zstd/1.4.9-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "zstd/1.5.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "zstd/1.5.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "zstd/1.5.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "zstd/1.5.5-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "zstd/1.5.5-GCCcore-13.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", 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"donphan", "joltik", "skitty"]}}, "ACTC": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ACTC/1.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "ADMIXTURE": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ADMIXTURE/1.3.0": ["doduo", "donphan", "joltik", "skitty"]}}, "alevin-fry": {"clusters": ["doduo"], "versions": {"alevin-fry/0.4.3-GCCcore-11.2.0": ["doduo"]}}, "Altair-EDEM": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"Altair-EDEM/2021.2": ["doduo", "donphan", "joltik"]}}, "AmberMini": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"AmberMini/16.16.0-intel-2020a": ["doduo", "donphan", "joltik", "skitty"]}}, "AmberTools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"AmberTools/20-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty"]}}, "antiSMASH": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": 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{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anadama2-0.10.0, cloudpickle-2.2.1, Markdown-3.4.1, Pweave-0.30.3"}}, "description": "AnADAMA2 is the next generation of AnADAMA(Another Automated Data Analysis Management Application). 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{"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Bandage/0.8.1_Centos": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Bandage is a program for visualising de novo assembly graphs", "homepage": "http://rrwick.github.io/Bandage/"}, "barrnap": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"barrnap/0.9-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "barrnap/0.9-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes.", "homepage": "https://github.com/tseemann/barrnap"}, "basemap": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"basemap/1.3.9-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "basemap-1.3.9, 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{"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bazel/0.29.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bazel/2.0.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bazel/2.0.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bazel/3.6.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bazel/3.4.1-GCCcore-8.3.0": {"clusters": ["donphan", "joltik", "skitty"]}, "Bazel/4.2.2-GCCcore-11.2.0": {"clusters": ["gallade"]}}, "description": "Bazel is a build tool that builds code quickly and reliably.It is used to build the majority of Google's software.", "homepage": "https://bazel.io/"}, "BBMap": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BBMap/38.98-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "BBMap/39.01-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BBMap/38.87-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BBMap short read aligner, and other bioinformatic tools.", "homepage": "https://sourceforge.net/projects/bbmap/"}, "bcbio-gff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bcbio-gff/0.7.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bcbio-gff/0.7.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Read and write Generic Feature Format (GFF) with Biopython integration.", "homepage": "https://github.com/chapmanb/bcbb/tree/master/gff"}, "BCFtools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BCFtools/1.11-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BCFtools/1.12-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", 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BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants", "homepage": "https://www.htslib.org/"}, "bcgTree": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"bcgTree/1.2.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Automatized phylogenetic tree building from bacterial core genomes.", "homepage": "https://github.com/molbiodiv/bcgTree"}, "bcl-convert": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"bcl-convert/4.0.3-2el7.x86_64": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "The Illumina BCL Convert v4.0 is a standalone local software app that converts the Binary Base Call (BCL) files produced by Illumina sequencing systems to FASTQ files.", "homepage": "https://support.illumina.com/sequencing/sequencing_software/bcl-convert.html"}, "bcl2fastq2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"bcl2fastq2/2.20.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "bcl2fastq2/2.20.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.", "homepage": "https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html"}, "BDBag": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"BDBag/1.6.3-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "bagit-1.8.1, bagit_profile-1.3.1, bdbag-1.6.3, setuptools_scm-5.0.2, tzlocal-2.1"}}, "description": "The bdbag utilities are a collection of software programs forworking with BagIt packages that conform to the Bagit and Bagit/RO profiles.", "homepage": "https://github.com/fair-research/bdbag"}, "beagle-lib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"beagle-lib/3.1.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "beagle-lib/3.1.2-gcccuda-2019b": {"clusters": ["accelgor", "joltik"]}, "beagle-lib/4.0.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "beagle-lib/3.1.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages.", "homepage": "https://github.com/beagle-dev/beagle-lib"}, "Beast": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Beast/1.10.4-gcccuda-2019b": {"clusters": ["accelgor", "joltik"]}, "Beast/1.10.5pre1-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Beast/2.7.3-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Beast/2.6.4-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability.", "homepage": "http://beast2.org"}, "BeautifulSoup": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BeautifulSoup/4.10.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "BeautifulSoup-4.10.0, soupsieve-2.3.1"}, "BeautifulSoup/4.10.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "BeautifulSoup-4.10.0, soupsieve-2.3.1"}, "BeautifulSoup/4.10.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "BeautifulSoup-4.10.0, soupsieve-2.3.1"}, "BeautifulSoup/4.11.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "BeautifulSoup-4.11.1, hatchling-1.12.2, soupsieve-2.3.2.post1"}, "BeautifulSoup/4.12.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "BeautifulSoup-4.12.2, soupsieve-2.4.1"}}, "description": "Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.", "homepage": "https://www.crummy.com/software/BeautifulSoup"}, "BEDOPS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BEDOPS/2.4.41-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.", "homepage": "http://bedops.readthedocs.io/en/latest/index.html"}, "BEDTools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BEDTools/2.30.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BEDTools/2.30.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BEDTools/2.30.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BEDTools/2.31.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BEDTools/2.29.2-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BEDTools/2.29.2-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BEDTools/2.30.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, 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"https://directory.fsf.org/project/binutils/"}, "Bio-DB-HTS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Bio-DB-HTS/3.01-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Bio-DB-HTS/3.01-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Read files using HTSlib including BAM/CRAM, Tabix and BCF database files", "homepage": "https://metacpan.org/release/Bio-DB-HTS"}, "biobakery-workflows": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"biobakery-workflows/3.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "bioBakery workflows is a collection of workflows and tasks for executingcommon microbial community analyses using standardized, validated tools and parameters.Quality control and statistical summary reports are automatically generated for most datatypes, which 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It aligns short DNA sequences (reads) to the human genome.", "homepage": "http://bowtie-bio.sourceforge.net/index.shtml"}, "Bowtie2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Bowtie2/2.4.4-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Bowtie2/2.4.5-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bowtie2/2.3.5.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bowtie2/2.3.5.1-iccifort-2019.5.281": {"clusters": ["doduo"]}, "Bowtie2/2.4.1-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bowtie2/2.4.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.", "homepage": "http://bowtie-bio.sourceforge.net/bowtie2/index.shtml"}, "Bracken": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Bracken/2.7-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Bracken/2.9-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. Braken uses the taxonomy labels assigned by Kraken, a highly accurate metagenomics classification algorithm, to estimate the number of reads originating from each species present in a sample. Kraken classifies reads to the best matching location in the taxonomic tree, but does not estimate abundances of species. We use the Kraken database itself to derive probabilities that describe how much sequence from each genome is identical to other genomes in the database, and combine this information with the assignments for a particular sample to estimate abundance at the species level, the genus level, or above. Combined with the Kraken classifier, Bracken produces accurate species- and genus-level abundance estimates even when a sample contains two or more near-identical species.NOTE: Bracken is compatible with both Kraken 1 and Kraken 2. However, the default kmer length is different depending on the version of Kraken used. If you use Kraken 1 defaults, specify 31 as the kmer length. If you use Kraken 2 defaults, specify 35 as the kmer length.", "homepage": "https://ccb.jhu.edu/software/bracken/"}, "BRAKER": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BRAKER/2.1.6-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "BRAKER/2.1.6-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BRAKER/2.1.5-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BRAKER is a pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes.", "homepage": "https://github.com/Gaius-Augustus/BRAKER"}, "Brotli-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Brotli-python/1.0.9-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli-python/1.0.9-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression.The specification of the Brotli Compressed Data Format is defined in RFC 7932.", "homepage": "https://github.com/google/brotli"}, "Brotli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Brotli/1.0.9-GCCcore-10.2.0": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.0.9-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.0.9-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.0.9-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.0.9-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.0.9-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.1.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression.The specification of the Brotli Compressed Data Format is defined in RFC 7932.", "homepage": "https://github.com/google/brotli"}, "Brunsli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Brunsli/0.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brunsli/0.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brunsli/0.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Brunsli is a lossless JPEG repacking library.", "homepage": "https://github.com/google/brunsli/"}, "btllib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"btllib/1.7.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Bioinformatics Technology Lab common code library", "homepage": "https://github.com/bcgsc/btllib"}, "build": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"build/0.10.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "build-0.10.0, pyproject_hooks-1.0.0"}}, "description": "A simple, correct Python build frontend.", "homepage": "https://github.com/pypa/build"}, "buildingspy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"buildingspy/4.0.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "buildingspy-4.0.0, Cerberus-1.3.4, pyfunnel-0.3.0, pytidylib-0.3.2"}}, "description": "Python modules for automating Modelica simulations and for running unit test for the Buildings library", "homepage": "https://simulationresearch.lbl.gov/modelica/buildingspy"}, "BUSCO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BUSCO/5.4.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "BUSCO/4.0.5-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BUSCO/4.0.6-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "BUSCO/4.1.2-foss-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BUSCO/5.1.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik"]}}, "description": "BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs", "homepage": "https://busco.ezlab.org/"}, "BUStools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BUStools/0.43.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "bustools is a program for manipulating BUS files for single cell RNA-Seq datasets. It can be used to error correct barcodes, collapse UMIs, produce gene count or transcript compatibility count matrices, and is useful for many other tasks. See the kallisto | bustools website for examples and instructions on how to use bustools as part of a single-cell RNA-seq workflow.", "homepage": "https://github.com/BUStools/bustools"}, "bwa-meth": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bwa-meth/0.2.6-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bwa-meth-0.2.6, toolshed-0.4.6"}, "bwa-meth/0.2.2-iccifort-2019.5.281": {"clusters": ["doduo"], "extensions": "bwa-meth-0.2.2, toolshed-0.4.0"}}, "description": "Fast and accurante alignment of BS-Seq reads.", "homepage": "https://github.com/brentp/bwa-meth"}, "BWA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BWA/0.7.17-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BWA/0.7.17-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BWA/0.7.17-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BWA/0.7.17-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BWA/0.7.17-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BWA/0.7.17-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BWA/0.7.17-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "BWA/0.7.17-iccifort-2019.5.281": {"clusters": ["doduo"]}}, "description": "Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.", "homepage": "http://bio-bwa.sourceforge.net/"}, "bwidget": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bwidget/1.9.15-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The BWidget Toolkit is a high-level Widget Set for Tcl/Tk built using native Tcl/Tk 8.x namespaces.", "homepage": "https://core.tcl-lang.org/bwidget/home"}, "bx-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bx-python/0.8.13-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "bx-python-0.8.13, python-lzo-1.14"}, "bx-python/0.9.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bx-python-0.9.0, python-lzo-1.14"}, "bx-python/0.10.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bx-python-0.10.0, python-lzo-1.15"}, "bx-python/0.8.9-foss-2020a-Python-3.8.2": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "bx-python-0.8.9, python-lzo-1.12"}}, "description": "The bx-python project is a Python library and associated set of scripts to allow for rapid implementation of genome scale analyses.", "homepage": "https://github.com/bxlab/bx-python"}, "bzip2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bzip2/1.0.8-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.6-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.", "homepage": "https://sourceware.org/bzip2"}, "c-ares": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"c-ares/1.18.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "c-ares/1.17.2-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "c-ares is a C library for asynchronous DNS requests (including name resolves)", "homepage": "https://c-ares.haxx.se"}, "cairo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cairo/1.16.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "cairo/1.16.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.16.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.16.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.16.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.17.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.17.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.17.8-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB", "homepage": "https://cairographics.org"}, "Cantera": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cantera/2.6.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Cantera/3.0.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Chemical kinetics, thermodynamics, and transport tool suite", "homepage": "https://github.com/Cantera/cantera"}, "canu": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"canu/2.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "canu/2.1.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "canu/2.2-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "canu/1.9-GCCcore-8.3.0-Java-11": {"clusters": ["donphan", "joltik"]}}, "description": "Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing", "homepage": "https://canu.readthedocs.io"}, "CapnProto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CapnProto/0.9.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CapnProto/1.0.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CapnProto/0.8.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "gallade", "skitty"]}}, "description": "Cap\u2019n Proto is an insanely fast data interchange format and capability-based RPC system.", "homepage": "https://capnproto.org"}, "Cartopy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cartopy/0.20.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cartopy-0.20.3, OWSLib-0.26.0, pyepsg-0.4.0, pykdtree-1.3.5, pyproj-3.2.1, pyshp-2.3.1"}, "Cartopy/0.20.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cartopy-0.20.3, OWSLib-0.27.2, pyepsg-0.4.0, pykdtree-1.3.5, pyshp-2.3.1"}, "Cartopy/0.22.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cartopy-0.22.0, OWSLib-0.29.3, pyepsg-0.4.0, pykdtree-1.3.10, pyshp-2.3.1"}, "Cartopy/0.18.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Cartopy-0.18.0, OWSLib-0.20.0, pyepsg-0.4.0, pykdtree-1.3.1, pyshp-2.1.0"}, "Cartopy/0.19.0.post1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cartopy-0.19.0.post1, OWSLib-0.24.1, pyepsg-0.4.0, pykdtree-1.3.4, pyshp-2.1.3"}, "Cartopy/0.19.0.post1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Cartopy-0.19.0.post1, OWSLib-0.24.1, pyepsg-0.4.0, pykdtree-1.3.4, pyshp-2.1.3"}}, "description": "Cartopy is a Python package designed to make drawing maps for data analysis and visualisation easy.", "homepage": "https://scitools.org.uk/cartopy/docs/latest/"}, "Casanovo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Casanovo/3.3.0-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "casanovo-3.3.0, Deprecated-1.2.13, depthcharge-ms-0.1.0, fastobo-0.12.2, lark-1.1.5, natsort-8.3.1, PyGithub-1.58.1, pyteomics-4.5.6, spectrum-utils-0.4.1"}, "Casanovo/3.3.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "casanovo-3.3.0, Deprecated-1.2.13, depthcharge-ms-0.1.0, fastobo-0.12.2, lark-1.1.5, natsort-8.3.1, PyGithub-1.58.1, pyteomics-4.5.6, spectrum-utils-0.4.1"}}, "description": "De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model", "homepage": "https://casanovo.readthedocs.io"}, "CASPR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", 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"joltik", "skitty"]}, "CD-HIT/4.8.1-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CD-HIT/4.8.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CD-HIT/4.8.1-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CD-HIT/4.8.1-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "CD-HIT/4.8.1-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.", "homepage": "https://github.com/weizhongli/cdhit"}, "CDBtools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CDBtools/0.99-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "CDB (Constant DataBase) indexing and retrieval tools for FASTA files", "homepage": "http://compbio.dfci.harvard.edu/tgi"}, "cdo-bindings": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cdo-bindings/1.5.7-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cdo-1.5.7"}}, "description": "Python interface to CDO.", "homepage": "https://github.com/Try2Code/cdo-bindings"}, "CDO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CDO/1.9.10-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CDO/2.0.5-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CDO/1.9.8-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.", "homepage": "https://code.zmaw.de/projects/cdo"}, "cdsapi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"cdsapi/0.5.1-GCCcore-11.3.0": 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"CellOracle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellOracle/0.12.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "celloracle-0.12.0, jupyter-1.0.0, jupyter-console-6.4.4"}}, "description": "CellOracle is a Python library for in silico gene perturbation analyses using single-cell omics dataand Gene Regulatory Network models.", "homepage": "https://github.com/morris-lab/CellOracle"}, "Cellpose": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cellpose/2.2.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "Cellpose-2.2.2, fastremap-1.13.5, natsort-8.3.1, roifile-2023.5.12, tifffile-2023.4.12"}, "Cellpose/2.2.2-foss-2022a": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cellpose-2.2.2, fastremap-1.13.5, natsort-8.3.1, roifile-2023.5.12, tifffile-2023.4.12"}}, "description": "a generalist algorithm for cellular segmentation", "homepage": "https://www.cellpose.org"}, "CellProfiler": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CellProfiler/4.2.4-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "CellProfiler-4.2.4, cellprofiler-core-4.2.4, centrosome-1.2.1, deprecation-2.1.0, h5py-3.6.0, inflect-6.0.2, mahotas-1.4.13, prokaryote-2.4.4, pydantic-1.10.2, python-bioformats-4.0.6, python-javabridge-4.0.3, pyzmq-22.3.0, sentry-sdk-1.10.1, typing_extensions-4.4.0, urllib3-1.26.12"}}, "description": "CellProfiler is a free open-source software designed to enable biologists without training incomputer vision or programming to quantitatively measure phenotypes from thousands of images automatically.", "homepage": "http://cellprofiler.org/"}, "CellRanger-ATAC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellRanger-ATAC/2.1.0": {"clusters": 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Markov state modeling of single-cell data. It contains two main modules:kernels compute cell-cell transition probabilities and estimators generatehypothesis based on these.", "homepage": "https://cellrank.readthedocs.io/en/stable/"}, "CellTypist": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellTypist/1.0.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CellTypist/1.6.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "celltypist-1.6.2"}}, "description": "A tool for semi-automatic cell type annotation", "homepage": "https://www.celltypist.org/"}, "CENSO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CENSO/1.2.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CENSO-1.2.0"}}, "description": "Commandline Energetic SOrting (CENSO) is a sorting algorithm for efficient evaluation of Structure Ensembles (SE). The input ensemble (or single structure) originating from a CREST[SQM/FF] run can be ranked by free energy at DFT level and/or geometries can be optimized using DFT.", "homepage": "https://xtb-docs.readthedocs.io/en/latest/CENSO_docs/censo.html"}, "Cereal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cereal/1.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to befast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.", "homepage": "https://uscilab.github.io/cereal/"}, "Ceres-Solver": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Ceres-Solver/2.2.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Ceres Solver is an open source C++ library for modeling and solving large, complicated optimizationproblems", "homepage": "http://ceres-solver.org"}, "CESM-deps": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CESM-deps/2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "CESM is a fully-coupled, community, global climate model thatprovides state-of-the-art computer simulations of the Earth's past, present,and future climate states.", "homepage": "https://www.cesm.ucar.edu/models/cesm2/"}, "cffi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cffi/1.15.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cffi-1.15.1, pycparser-2.21"}, "cffi/1.15.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cffi-1.15.1, pycparser-2.21"}, "cffi/1.15.1-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cffi-1.15.1, pycparser-2.21"}}, "description": "C Foreign Function Interface for Python. Interact with almost any C code fromPython, based on C-like declarations that you can often copy-paste from headerfiles or documentation.", "homepage": "https://cffi.readthedocs.io/en/latest/"}, "CFITSIO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CFITSIO/3.49-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CFITSIO/4.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CFITSIO/4.2.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CFITSIO/4.2.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CFITSIO/4.3.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CFITSIO/3.47-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CFITSIO is a library of C and Fortran subroutines for reading and writing data files inFITS (Flexible Image Transport System) data format.", "homepage": "https://heasarc.gsfc.nasa.gov/fitsio/"}, "CGAL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CGAL/4.14.1-foss-2019b-Python-3.7.4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CGAL/4.14.3-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/4.14.3-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/4.14.3-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/5.2-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/5.5.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/5.6-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/4.14.1-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CGAL/4.14.3-gompi-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CGAL/4.14.3-iimpi-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CGAL/5.2-iimpi-2020b": {"clusters": ["doduo"]}}, "description": "The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.", "homepage": "https://www.cgal.org/"}, "Cgl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cgl/0.60.7-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Cgl/0.60.8-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators thatcan be used with other COIN-OR packages that make use of cuts, such as, amongothers, the linear solver Clp or the mixed integer linear programming solversCbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use orcommunicate with a solver. It does not directly call a solver.", "homepage": "https://github.com/coin-or/Cgl"}, "CharLS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CharLS/2.4.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CharLS is a C++ implementation of the JPEG-LS standard for lossless and near-lossless imagecompression and decompression. JPEG-LS is a low-complexity image compression standard that matches JPEG 2000compression ratios.", "homepage": "https://github.com/team-charls/charls"}, "Check": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Check/0.15.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Check is a unit testing framework for C. It features a simple interface fordefining unit tests, putting little in the way of the developer. Tests arerun in a separate address space, so both assertion failures and code errorsthat cause segmentation faults or other signals can be caught. Test resultsare reportable in the following: Subunit, TAP, XML, and a generic loggingformat.", "homepage": "https://libcheck.github.io/check/"}, "CheckM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CheckM/1.1.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CheckM/1.0.18-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "CheckM/1.1.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CheckM/1.1.2-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CheckM/1.1.3-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.", "homepage": "https://github.com/Ecogenomics/CheckM"}, "chemprop": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"chemprop/1.5.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "chemprop-1.5.2, mypy_extensions-1.0.0, packaging-20.4, pandas_flavor-0.2.0, typed-argument-parser-1.7.2, typing_inspect-0.8.0"}, "chemprop/1.5.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "chemprop-1.5.2, mypy_extensions-1.0.0, packaging-20.4, pandas_flavor-0.2.0, typed-argument-parser-1.7.2, typing_inspect-0.8.0"}}, "description": "Message Passing Neural Networks for Molecule Property Prediction", "homepage": "https://github.com/chemprop/chemprop"}, "CheMPS2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CheMPS2/1.8.12-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CheMPS2/1.8.12-foss-2022a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CheMPS2 is a scientific library which contains a spin-adapted implementation of thedensity matrix renormalization group (DMRG) for ab initio quantum chemistry.", "homepage": "https://github.com/SebWouters/CheMPS2"}, "Chimera": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Chimera/1.16-linux_x86_64": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles.", "homepage": "https://www.cgl.ucsf.edu/chimera/"}, "cicero": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cicero/1.3.8-foss-2022a-R-4.2.1-Monocle3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cicero/1.3.4.11-foss-2020b-R-4.0.3-Monocle3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Cicero is an R package that provides tools for analyzing single-cell chromatin accessibility experiments.", "homepage": "https://cole-trapnell-lab.github.io/cicero-release"}, "cimfomfa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cimfomfa/22.273-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "This library supports both MCL, a cluster algorithm for graphs, and zoem, amacro/DSL language. It supplies abstractions for memory management, I/O,associative arrays, strings, heaps, and a few other things. The string libraryhas had heavy testing as part of zoem. Both understandably and regrettably Ichose long ago to make it C-string-compatible, hence nul bytes may not be partof a string. At some point I hope to rectify this, perhaps unrealistically.", "homepage": "https://github.com/micans/cimfomfa"}, "CIRCexplorer2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CIRCexplorer2/2.3.8-foss-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CIRCexplorer2/2.3.8-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CIRCexplorer2 is a comprehensive and integrative circular RNA analysis toolset.", "homepage": "http://circexplorer2.readthedocs.io/"}, "Circlator": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Circlator/1.5.5-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Circlator-1.5.5, pymummer-0.11.0"}}, "description": "A tool to circularize genome assemblies.s", "homepage": "https://github.com/sanger-pathogens/circlator/"}, "Circuitscape": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Circuitscape/5.12.3-Julia-1.7.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "AbstractFFTs-1.2.1, Adapt-3.4.0, AlgebraicMultigrid-0.5.1, ArchGDAL-0.8.5, ArnoldiMethod-0.2.0, Arrow_jll-10.0.0+1, boost_jll-1.76.0+1, Bzip2_jll-1.0.8+0, CEnum-0.4.2, ChainRulesCore-1.15.6, ChangesOfVariables-0.1.4, Circuitscape-5.12.3, Colors-0.12.10, ColorSchemes-3.20.0, ColorTypes-0.11.4, ColorVectorSpace-0.9.9, CommonSolve-0.2.3, Compat-4.5.0, DataAPI-1.14.0, DataStructures-0.18.13, DataValueInterfaces-1.0.0, DiskArrays-0.3.8, DocStringExtensions-0.9.3, Expat_jll-2.4.8+0, FixedPointNumbers-0.8.4, GDAL-1.5.0, GDAL_jll-301.600.100+0, GeoFormatTypes-0.4.1, GeoInterface-0.5.7, GEOS_jll-3.11.0+0, Graphics-1.1.2, Graphs-1.7.4, GZip-0.5.1, HDF5_jll-1.12.2+2, ImageCore-0.9.4, Inflate-0.1.3, IntelOpenMP_jll-2018.0.3+2, InverseFunctions-0.1.8, IrrationalConstants-0.1.1, IterativeSolvers-0.9.2, IteratorInterfaceExtensions-1.0.0, JLLWrappers-1.4.1, JpegTurbo_jll-2.1.2+0, Kerberos_krb5_jll-1.19.3+0, LERC_jll-3.0.0+1, libgeotiff_jll-100.700.100+0, Libiconv_jll-1.16.1+2, libpng_jll-1.6.37+5, LibPQ_jll-14.3.0+1, Libtiff_jll-4.4.0+0, LittleCMS_jll-2.12.0+0, LogExpFunctions-0.3.19, Lz4_jll-1.9.3+0, LZO_jll-2.10.1+0, MacroTools-0.5.10, MappedArrays-0.4.1, MKL_jll-2022.2.0+0, MosaicViews-0.3.4, NaNMath-1.0.1, NetCDF_jll-400.902.5+1, OffsetArrays-1.12.8, OpenJpeg_jll-2.4.0+0, OpenSpecFun_jll-0.5.5+0, OpenSSL_jll-1.1.19+0, OrderedCollections-1.4.1, PaddedViews-0.5.11, Pardiso-0.5.4, PlotUtils-1.3.4, Preferences-1.3.0, PROJ_jll-900.100.0+0, RecipesBase-1.3.0, Reexport-1.2.2, SimpleTraits-0.9.4, SimpleWeightedGraphs-1.2.1, snappy_jll-1.1.9+1, SnoopPrecompile-2.9.5, SpecialFunctions-2.1.7, SQLite_jll-3.40.0+1, StackViews-0.1.1, StaticArrays-1.5.11, StaticArraysCore-1.4.0, Tables-1.10.0, TableTraits-1.0.1, TensorCore-0.1.1, Thrift_jll-0.16.0+0, XML2_jll-2.9.14+0, Zstd_jll-1.5.2+0"}}, "description": "Algorithms from circuit theory to predict connectivity in heterogeneous landscapes", "homepage": "https://github.com/Circuitscape/Circuitscape.jl"}, "CIRIquant": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CIRIquant/1.1.2-20221201-foss-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argparse-1.4.0, CIRIquant-1.1.2-20221201"}}, "description": "CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data", "homepage": "https://github.com/bioinfo-biols/CIRIquant"}, "Clair3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Clair3/1.0.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Clair3 is a germline small variant caller for long-reads.Clair3 makes the best of two major method categories: pileup calling handlesmost variant candidates with speed, and full-alignment tackles complicated candidatesto maximize precision and recall. Clair3 runs fast and has superior performance,especially at lower coverage. Clair3 is simple and modular for easy deployment andintegration.", "homepage": "https://github.com/HKU-BAL/Clair3"}, "Clang": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Clang/9.0.1-GCC-8.3.0-CUDA-10.1.243": {"clusters": ["accelgor", "joltik"]}, "Clang/12.0.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/12.0.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/13.0.1-GCCcore-11.3.0-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "Clang/13.0.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/15.0.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/16.0.6-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/9.0.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Clang/10.0.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Clang/11.0.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/11.0.1-gcccuda-2020b": {"clusters": ["joltik"]}}, "description": "C, C++, Objective-C compiler, based on LLVM. 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CLHEP is structured in a set of packages independent of any external package.", "homepage": "https://proj-clhep.web.cern.ch/proj-clhep/"}, "Clp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Clp/1.17.7-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Clp/1.17.8-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clp/1.17.9-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Clp (Coin-or linear programming) is an open-source linear programming solver.It is primarily meant to be used as a callable library, but a basic,stand-alone executable version is also available.", "homepage": "https://github.com/coin-or/Clp"}, "Clustal-Omega": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Clustal-Omega/1.2.4-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Clustal-Omega/1.2.4-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Clustal Omega is a multiple sequence alignment program for proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms", "homepage": "http://www.clustal.org/omega/"}, "CMake": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CMake/3.12.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.15.3-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.16.4-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.18.4-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.20.1-GCCcore-10.2.0": {"clusters": ["accelgor"]}, "CMake/3.20.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.21.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.22.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.23.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.24.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.24.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.26.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.27.6-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.11.4-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CMake/3.13.3-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.", "homepage": "https://www.cmake.org"}, "CMAverse": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CMAverse/20220112-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "The R package CMAverse provides a suite of functions for reproducible causal mediation analysisincluding cmdag for DAG visualization, cmest for statistical modeling and cmsens for sensitivity analysis.", "homepage": "https://bs1125.github.io/CMAverse/"}, "CmdStanR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CmdStanR/0.5.0-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CmdStanR/0.5.2-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CmdStanR/0.7.1-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CmdStanR is a lightweight interface to Stan for R users", "homepage": "https://mc-stan.org/cmdstanr"}, "CMSeq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CMSeq/1.0.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus.", "homepage": "https://github.com/SegataLab/cmseq/"}, "CodAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CodAn/1.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CodAn (Coding sequence Annotator) is a computational tool designed to characterize the CDS and UTRregions on transcripts from any Eukaryote species.", "homepage": "https://github.com/pedronachtigall/CodAn"}, "code-cli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"code-cli/1.85.1-x64": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). 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{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Atoms-in-molecules density partitioning schemes based on stockholder recipe", "homepage": "https://github.com/theochem/denspart"}, "Deprecated": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Deprecated/1.2.13-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Deprecated-1.2.13, wrapt-1.15.0"}, "Deprecated/1.2.13-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Deprecated-1.2.13, wrapt-1.12.1"}}, "description": "If you need to mark a function or a method as deprecated, you can use the @deprecated decorator.", "homepage": "https://github.com/tantale/deprecated"}, "detectron2": {"clusters": ["accelgor", "joltik"], "versions": {"detectron2/0.6-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "black-21.4b2, 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The code is developed to study free-surface flow phenomena where Eulerian methods can be difficult to apply, such as waves or impact of dam-breaks on off-shore structures. DualSPHysics is a set of C++, CUDA and Java codes designed to deal with real-life engineering problems.", "homepage": "https://dual.sphysics.org/"}, "DUBStepR": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"DUBStepR/1.2.0-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selectionalgorithm for cell type identification in single-cell RNA-sequencing data.", "homepage": "https://github.com/prabhakarlab/DUBStepR"}, "duplex-tools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"duplex-tools/0.3.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "duplex-tools-0.3.1, iso8601-1.1.0, lib-pod5-0.1.5, mappy-2.24, natsort-8.3.1, pod5-0.1.5, pyfastx-0.9.1, vbz-h5py-plugin-1.0.1"}, "duplex-tools/0.3.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "duplex-tools-0.3.3, iso8601-1.1.0, mappy-2.24, natsort-8.4.0, pyfastx-1.1.0, vbz-h5py-plugin-1.0.1"}}, "description": "Duplex Tools contains a set of utilities for dealing with Duplex sequencing data. Tools are provided to identify and prepare duplex pairs for basecalling by Dorado (recommended) and Guppy, and for recovering simplex basecalls from incorrectly concatenated pairs.", "homepage": "https://github.com/nanoporetech/duplex-tools"}, "DyMat": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"DyMat/0.7-foss-2021b-2020-12-12": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Read and process result files from Dymola and OpenModelica with Python.", "homepage": "https://www.j-raedler.de/projects/DyMat"}, "dynesty": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dynesty/2.1.3-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "coverage-6.5.0, coveralls-3.3.1, dynesty-2.1.3, pytest-cov-4.1.0"}}, "description": "dynesty is a Pure Python, MIT-licensed Dynamic Nested Sampling packagefor estimating Bayesian posteriors and evidences.", "homepage": "https://dynesty.readthedocs.io/"}, "EasyBuild": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EasyBuild/4.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.3.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.3.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.3.4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.4.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.4.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.4.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.6.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.6.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.6.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.7.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.7.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.8.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.8.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.9.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.", "homepage": "https://easybuilders.github.io/easybuild"}, "ebGSEA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ebGSEA/0.1.0-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ebGSEA-0.1.0, kpmt-0.1.0"}}, "description": "Gene Set Enrichment Analysis is one of the most common tasks in the analysis of omic data, and is critical for biological interpretation. In the context of Epigenome Wide Association Studies (EWAS), which typically rank individual cytosines according to the level of differential methylation, enrichment analysis of biological pathways is challenging due to differences in CpG/probe density between genes.", "homepage": "https://github.com/aet21/ebGSEA"}, "ecCodes": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ecCodes/2.22.1-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ecCodes/2.24.2-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ecCodes/2.15.0-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ecCodes is a package developed by ECMWF which provides an application programming interface and a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2, WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding).", "homepage": "https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home"}, "EDirect": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EDirect/20.5.20231006-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Entrez Direct (EDirect) provides access to the NCBI's suite ofinterconnected databases from a Unix terminal window. Search terms are enteredas command-line arguments. Individual operations are connected with Unix pipesto construct multi-step queries. 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It uses precomputed orthologous groups and phylogenies from theeggNOG database (http://eggnog5.embl.de) to transfer functional information fromfine-grained orthologs only. Common uses of eggNOG-mapper include the annotationof novel genomes, transcriptomes or even metagenomic gene catalogs.", "homepage": "https://github.com/eggnogdb/eggnog-mapper"}, "Eigen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Eigen/3.3.7-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.3.7": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.3.8-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.3.9-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.3.9-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.4.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.4.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.4.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.4.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.4.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.3.9-GCCcore-10.2.0": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}}, "description": "Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.", "homepage": "https://eigen.tuxfamily.org"}, "einops": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"einops/0.4.1-GCCcore-10.3.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "einops/0.4.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Flexible and powerful tensor operations for readable and reliable code.Supports numpy, pytorch, tensorflow, jax, and others.", "homepage": "https://einops.rocks/"}, "elfutils": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"elfutils/0.185-GCCcore-8.3.0": {"clusters": ["accelgor", "joltik"]}, "elfutils/0.185-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "elfutils/0.185-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "elfutils/0.187-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "elfutils/0.183-GCCcore-10.2.0": {"clusters": ["donphan", "gallade", "joltik"]}}, "description": "The elfutils project provides libraries and tools for ELF files and DWARF data.", "homepage": "https://elfutils.org/"}, "ELPA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ELPA/2021.05.001-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ELPA/2021.05.001-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ELPA/2019.11.001-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ELPA/2019.11.001-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ELPA/2020.11.001-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "ELPA/2021.05.001-intel-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Eigenvalue SoLvers for Petaflop-Applications .", "homepage": "https://elpa.rzg.mpg.de"}, "EMBOSS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"EMBOSS/6.6.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "EMBOSS/6.6.0-GCC-8.3.0-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "EMBOSS is 'The European Molecular Biology Open Software Suite'. 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A client, suchas a text editor or word processor, need not know anything about a specificspell-checker, and since all back-ends are plugins, new spell-checkers canbe added without needing any change to the program using Enchant.", "homepage": "https://github.com/AbiWord/enchant"}, "epiScanpy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"epiScanpy/0.4.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bamnostic-1.1.8, dunamai-1.16.0, episcanpy-0.4.0, get_version-3.5.4, kneed-0.8.2, legacy-api-wrap-1.2, pyliftover-0.4, python-louvain-0.16"}, "epiScanpy/0.3.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bamnostic-1.1.7, episcanpy-0.3.1, get_version-3.2, legacy-api-wrap-1.2, pyliftover-0.4, python-louvain-0.15"}}, "description": "EpiScanpy is a toolkit to analyse single-cell open chromatin(scATAC-seq) and single-cell DNA methylation (for example scBS-seq)data. 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ESMFold harnesses the ESM-2 language model to generate accurate structure predictions end to end directly from the sequence of a protein.", "homepage": "https://github.com/facebookresearch/esm"}, "ESMF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ESMF/8.2.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ESMF/8.0.0-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ESMF/8.0.1-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ESMF/8.0.1-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "ESMF/8.1.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications.", "homepage": "https://www.earthsystemcog.org/projects/esmf/"}, "ETE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ETE/3.1.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ETE/3.1.3-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A Python framework for the analysis and visualization of trees", "homepage": "http://etetoolkit.org"}, "EUKulele": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EUKulele/2.0.6-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "dill-0.3.6, EUKulele-2.0.6, joblib-1.3.1, latexcodec-2.0.1, multiprocess-0.70.14, oset-0.1.3, pybtex-0.24.0, pybtex-docutils-1.0.3, pytest-cov-4.1.0, python-coveralls-2.9.3, sphinxcontrib-bibtex-1.0.0"}, "EUKulele/1.0.4-foss-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "apipkg-1.5, coverage-5.4, dill-0.3.3, EUKulele-1.0.4, execnet-1.8.0, latexcodec-2.0.1, multiprocess-0.70.11.1, oset-0.1.3, pybtex-0.24.0, pybtex-docutils-1.0.0, pytest-cov-2.11.1, pytest-forked-1.3.0, pytest-xdist-2.2.1, python-coveralls-2.9.3, sphinxcontrib-bibtex-1.0.0"}}, "description": "EUKulele is a Python program for taxonomic annotation of microbes in metatranscriptomic and metagenomic samples, with special emphasis on eukaryote discovery.", "homepage": "https://github.com/AlexanderLabWHOI/EUKulele"}, "exiv2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"exiv2/0.27.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "exiv2/0.27.4-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Exiv2 is a Cross-platform C++ library and a command line utility to manage image metadata.", "homepage": "https://exiv2.org"}, "Exonerate": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Exonerate/2.4.0-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Exonerate/2.4.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Exonerate/2.4.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Exonerate/2.4.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}, "Exonerate/2.4.0-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.", "homepage": "https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate"}, "expat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"expat/2.2.7-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.2.9-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.2.9-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.2.9-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.4.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.4.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.4.9-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.5.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.5.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.2.6-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Expat is an XML parser library written in C. 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Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.", "homepage": "https://github.com/ezyang/expecttest"}, "ExtremeLy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ExtremeLy/2.3.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "evt-0.0.2, ExtremeLy-2.3.0, seaborn-0.13.2"}}, "description": "A python package for Extreme Value Analysis.", "homepage": "https://github.com/SURYA-LAMICHANEY/ExtremeLy"}, "Faiss": {"clusters": ["accelgor", "joltik"], "versions": {"Faiss/1.7.2-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}}, "description": "Faiss is a library for efficient similarity search and clustering of dense vectors.", "homepage": "https://github.com/facebookresearch/faiss"}, "fasta-reader": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fasta-reader/3.0.2-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "fasta-reader-3.0.2"}}, "description": "FASTA file reader", "homepage": "https://github.com/EBI-Metagenomics/fasta-reader-py"}, "FASTA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FASTA/36.3.8i-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The FASTA programs find regions of local or global (new) similarity between protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence.", "homepage": "https://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml"}, "fastahack": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fastahack/1.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "fastahack/1.0.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Utilities for indexing and sequence extraction from FASTA files.", "homepage": "https://github.com/ekg/fastahack"}, "fastai": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fastai/2.7.10-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "fastai-2.7.10, fastcore-1.5.27, fastdownload-0.0.7, fastprogress-1.0.3"}}, "description": "The fastai deep learning library.", "homepage": "https://www.fast.ai/"}, "FastANI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FastANI/1.33-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FastANI/1.33-intel-compilers-2021.4.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FastANI/1.34-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FastANI/1.3-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FastANI/1.31-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FastANI/1.33-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}, "FastANI/1.33-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. 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It reads in sequence data in a variety of formats and can eitherprovide an interactive application to review the results of several differentQC checks, or create an HTML based report which can be integrated into apipeline.", "homepage": "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/"}, "FastTree": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FastTree/2.1.11-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FastTree/2.1.11-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FastTree/2.1.11-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FastTree/2.1.11-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FastTree/2.1.11-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FastTree/2.1.11-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory.", "homepage": "http://www.microbesonline.org/fasttree/"}, "FASTX-Toolkit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FASTX-Toolkit/0.0.14-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "PerlIO::gzip-0.20"}, "FASTX-Toolkit/0.0.14-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.", "homepage": "http://hannonlab.cshl.edu/fastx_toolkit/"}, "FDS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FDS/6.7.7-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FDS/6.7.9-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FDS/6.8.0-intel-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FDS/6.7.4-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FDS/6.7.5-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FDS/6.7.6-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "FDS/6.7.5-intel-2020b": {"clusters": ["donphan", "joltik"]}}, "description": "Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires.", "homepage": "https://pages.nist.gov/fds-smv/"}, "FFAVES": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FFAVES/2022.11.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "dill-0.3.8, FFAVES-2022.11.1, multiprocess-0.70.16"}}, "description": "Functional Feature Amplification Via Entropy Sorting (FFAVES).Use FFAVES to amplify the signal of groups of co-regulating genes in an unsupervised, multivariate manner.By amplifying the signal of genes with correlated expression, while filtering out genes that are randomly expressed,we can identify a subset of genes more predictive of different cell types.The output of FFAVES can then be used in our second algorithm, entropy sort feature weighting (ESFW),to create a ranked list of genes that are most likely to pertain to distinct sub-populations of cells in an scRNA-seq dataset.", "homepage": "https://github.com/aradley/FFAVES"}, "FFmpeg": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FFmpeg/4.2.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FFmpeg/4.3.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/4.3.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/4.3.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/4.4.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/5.1.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/6.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/4.2.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A complete, cross-platform solution to record, convert and stream audio and video.", "homepage": "https://www.ffmpeg.org/"}, "ffnvcodec": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ffnvcodec/11.1.5.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ffnvcodec/12.0.16.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present(picked up dynamically).", "homepage": "https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git"}, "FFTW.MPI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FFTW.MPI/3.3.10-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW.MPI/3.3.10-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW.MPI/3.3.10-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW.MPI/3.3.10-gompi-2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FFTW is a C subroutine library for computing the discrete Fourier transform (DFT)in one or more dimensions, of arbitrary input size, and of both real and complex data.", "homepage": "https://www.fftw.org"}, "FFTW": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FFTW/3.3.8-gompi-2019b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FFTW/3.3.8-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.8-gompic-2020b": {"clusters": ["accelgor", "joltik"]}, "FFTW/3.3.9-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.10-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.10-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.10-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.10-GCC-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.10-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.8-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, 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It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.", "homepage": "http://hmmer.org/"}, "hmmlearn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hmmlearn/0.3.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hmmlearn/0.3.0-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "hmmlearn is a set of algorithms for unsupervised learning and inference of Hidden Markov Models", "homepage": "https://github.com/hmmlearn/hmmlearn"}, "Horovod": {"clusters": ["accelgor", "joltik"], "versions": {"Horovod/0.21.1-fosscuda-2020b-TensorFlow-2.4.1": {"clusters": ["accelgor", "joltik"], "extensions": "cloudpickle-1.5.0, horovod-0.21.1"}, "Horovod/0.21.3-fosscuda-2020b-PyTorch-1.7.1": {"clusters": ["accelgor", "joltik"], "extensions": "cloudpickle-1.6.0, horovod-0.21.3"}, "Horovod/0.22.0-fosscuda-2020b-PyTorch-1.8.1": {"clusters": ["accelgor"], "extensions": "cloudpickle-1.6.0, horovod-0.22.0"}, "Horovod/0.23.0-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0": {"clusters": ["accelgor"], "extensions": "cloudpickle-2.0.0, horovod-0.23.0"}, "Horovod/0.23.0-fosscuda-2020b-TensorFlow-2.5.0": {"clusters": ["accelgor", "joltik"], "extensions": "cloudpickle-1.6.0, horovod-0.23.0"}}, "description": "Horovod is a distributed training framework for TensorFlow.", "homepage": "https://github.com/uber/horovod"}, "how_are_we_stranded_here": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"how_are_we_stranded_here/1.0.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Python package for testing strandedness of RNA-Seq fastq files", "homepage": "https://github.com/signalbash/how_are_we_stranded_here"}, "HPL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HPL/2.0.15-intel-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"]}, "HPL/2.3-foss-2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HPL/2.3-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HPL/2.3-gobff-2020b": {"clusters": ["doduo"]}, "HPL/2.3-iibff-2020b": {"clusters": ["doduo"]}, "HPL/2.3-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. 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This package includes the utilities bgzip and tabix", "homepage": "https://www.htslib.org/"}, "HTSplotter": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HTSplotter/0.15-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "HTSplotter-0.15, minio-7.1.13, pypdf-3.4.1, PyPDF2-3.0.1, PyPDF3-1.0.6"}, "HTSplotter/2.11-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "HTSplotter-2.11, minio-7.1.13, pypdf-3.6.0, PyPDF2-3.0.1, PyPDF3-1.0.6"}}, "description": "HTSplotter allows an end-to-end data processing and analysis of chemical and genetic in vitroperturbation screens.", "homepage": "https://github.com/CBIGR/HTSplotter"}, "humann": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"humann/3.6-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "humann-3.6"}}, "description": "HUMAnN v3 is a pipeline for efficiently and accurately determining the coverage and abundance of microbial pathways in a community from metagenomic data.Sequencing a metagenome typically produces millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question: What are the microbes in my community-of-interest doing (or capable of doing)?", "homepage": "http://huttenhower.sph.harvard.edu/humann"}, "hunspell": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hunspell/1.7.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Hunspell is a spell checker and morphological analyzer library and program designed for languageswith rich morphology and complex word compounding or character encoding.", "homepage": "http://hunspell.github.io/"}, "hwloc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hwloc/1.11.12-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.2.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.2.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.4.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.5.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.7.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.8.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.9.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.9.2-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.", "homepage": "https://www.open-mpi.org/projects/hwloc/"}, "Hybpiper": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Hybpiper/2.1.6-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Hybpiper-2.1.6, Pebble-5.0.3, progressbar2-4.2.0, python-utils-3.7.0"}}, "description": "HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts/modules that wrap and connect bioinformatics tools in order to extract target sequences from high-throughput DNA sequencing reads.", "homepage": "https://github.com/mossmatters/HybPiper"}, "Hydra": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Hydra/1.1.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "antlr4-python3-runtime-4.8, hydra-1.1.1, omegaconf-2.1.1"}}, "description": "Hydra is an open-source Python framework that simplifies the development ofresearch and other complex applications. The key feature is the ability todynamically create a hierarchical configuration by composition and override itthrough config files and the command line. The name Hydra comes from itsability to run multiple similar jobs - much like a Hydra with multiple heads.", "homepage": "https://hydra.cc/"}, "Hyperopt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Hyperopt/0.2.7-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "cloudpickle-2.0.0, hyperopt-0.2.7, py4j-0.10.9.5"}, "Hyperopt/0.2.7-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cloudpickle-2.2.1, hyperopt-0.2.7, py4j-0.10.9.7"}}, "description": "hyperopt is a Python library for optimizing over awkward search spaces with real-valued, discrete, and conditional dimensions.", "homepage": "http://hyperopt.github.io/hyperopt/"}, "hypothesis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hypothesis/4.57.1-GCCcore-11.2.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/5.41.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/5.41.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.13.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.14.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.46.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.68.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.82.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.90.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/4.44.2-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "attrs-19.3.0, hypothesis-4.44.2"}}, "description": "Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. 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The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.", "homepage": "https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods"}, "iccifort": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"iccifort/2020.1.217": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iccifort/2020.4.304": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iccifort/2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Intel C, C++ & Fortran compilers", "homepage": "https://software.intel.com/en-us/intel-compilers/"}, "ICU": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ICU/64.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ICU/67.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/69.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/69.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/71.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/72.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/73.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/66.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.", "homepage": "https://icu-project.org/"}, "IDBA-UD": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"IDBA-UD/1.1.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "IDBA-UD/1.1.3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short ReadsSequencing data with Highly Uneven Sequencing Depth. It is an extension of IDBA algorithm.IDBA-UD also iterates from small k to a large k. In each iteration, short and low-depthcontigs are removed iteratively with cutoff threshold from low to high to reduce the errorsin low-depth and high-depth regions. Paired-end reads are aligned to contigs and assembledlocally to generate some missing k-mers in low-depth regions. With these technologies, IDBA-UDcan iterate k value of de Bruijn graph to a very large value with less gaps and less branchesto form long contigs in both low-depth and high-depth regions.", "homepage": "https://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/"}, "igraph": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"igraph/0.9.4-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "igraph/0.9.5-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "igraph/0.10.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "igraph/0.10.10-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "igraph/0.8.2-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "igraph/0.9.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "igraph/0.9.1-fosscuda-2020b": 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"skitty"]}, "iimpi/2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iimpi/2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iimpi/2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iimpi/2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "iimpi/2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Intel C/C++ and Fortran compilers, alongside Intel MPI.", "homepage": "https://software.intel.com/parallel-studio-xe"}, "imagecodecs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"imagecodecs/2022.9.26-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bitshuffle-0.5.1, imagecodecs-2022.9.26"}}, "description": "Imagecodecs is a Python library that provides block-oriented, in-memory buffer transformation,compression, and decompression functions for use in the tifffile, czifile, zarr, and otherscientific image input/output modules.", "homepage": "https://github.com/cgohlke/imagecodecs"}, "imageio": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"imageio/2.10.5-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "imageio/2.13.5-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imageio/2.22.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imageio/2.9.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Imageio is a Python library that provides an easy interface to read and write a wide range of image data, including animated images, video, volumetric data, and scientific formats.", "homepage": "https://imageio.github.io"}, "ImageMagick": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", 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Pre-processing single-cell RNA-seq involves: (1) association of reads with their cells of origin, (2) collapsing of reads according to unique molecular identifiers (UMIs), and (3) generation of gene or feature counts from the reads to generate a cell x gene matrix.", "homepage": "https://www.kallistobus.tools/"}, "Kent_tools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Kent_tools/422-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Kent_tools/401-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Kent_tools/411-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Kent_tools/20190326-linux.x86_64": {"clusters": ["donphan", "joltik"]}}, "description": "Kent tools: collection of tools used by the UCSC genome browser.", "homepage": "http://genome.cse.ucsc.edu/"}, "Keras": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Keras/2.4.3-fosscuda-2020b-TensorFlow-2.5.0": {"clusters": ["accelgor", "joltik"], "extensions": "Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2"}, "Keras/2.4.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2"}, "Keras/2.4.3-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2"}}, "description": "Keras is a deep learning API written in Python, running on top of the machine learning platform TensorFlow.", "homepage": "https://keras.io/"}, "KerasTuner": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"KerasTuner/1.3.5-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "keras-tuner-1.3.5, kt-legacy-1.0.5"}}, "description": "KerasTuner is an easy-to-use, scalable hyperparameter optimization framework that solves the painpoints of hyperparameter search.", "homepage": "https://keras.io/keras_tuner"}, "kim-api": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"kim-api/2.3.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "kim-api/2.1.3-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "kim-api/2.1.3-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "kim-api/2.1.3-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "kim-api/2.2.1-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Open Knowledgebase of Interatomic Models.KIM is an API and OpenKIM is a collection of interatomic models (potentials) foratomistic simulations. This is a library that can be used by simulation programsto get access to the models in the OpenKIM database.This EasyBuild only installs the API, the models can be installed with thepackage openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAMEor kim-api-collections-management install user OpenKIMto install them all.", "homepage": "https://openkim.org/"}, "kineto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"kineto/0.4.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A CPU+GPU Profiling library that provides access to timeline traces and hardware performance counters", "homepage": "https://github.com/pytorch/kineto"}, "KMC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"KMC/3.2.1-GCC-11.2.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "KMC/3.2.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "KMC/3.1.2rc1-GCC-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "KMC is a disk-based programm for counting k-mers from (possibly gzipped) FASTQ/FASTA files.", "homepage": "http://sun.aei.polsl.pl/kmc"}, "kneaddata": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"kneaddata/0.12.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "kneaddata-0.12.0"}}, "description": "KneadData is a tool designed to perform quality control on metagenomic andmetatranscriptomic sequencing data, especially data from microbiome experiments.", "homepage": "http://huttenhower.sph.harvard.edu/kneaddata"}, "KrakenUniq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"KrakenUniq/1.0.3-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "KrakenUniq: confident and fast metagenomics classification using unique k-mer counts", "homepage": "https://github.com/fbreitwieser/krakenuniq/"}, "krbalancing": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"krbalancing/0.5.0b0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "krbalancing-0.5.0b0"}}, "description": "A C++ extension for Python which computes K.R. balanced matrices.", "homepage": "https://github.com/deeptools/Knight-Ruiz-Matrix-balancing-algorithm"}, "KronaTools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"KronaTools/2.8.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "KronaTools/2.8.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "KronaTools/2.8-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.", "homepage": "https://github.com/marbl/Krona/wiki/KronaTools"}, "L_RNA_scaffolder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"L_RNA_scaffolder/20190530-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "L_RNA_scaffolder is a genome scaffolding tool with long trancriptome reads", "homepage": "https://github.com/CAFS-bioinformatics/L_RNA_scaffolder"}, "Lace": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Lace/1.14.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Building SuperTranscripts: A linear representation of transcriptome data", "homepage": "https://github.com/Oshlack/Lace"}, "LAME": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LAME/3.100-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "LAME/3.100-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.", "homepage": "http://lame.sourceforge.net/"}, "LAMMPS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"LAMMPS/23Jun2022-foss-2021b-kokkos-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"]}, "LAMMPS/23Jun2022-foss-2021b-kokkos": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/patch_20Nov2019-intel-2019b": {"clusters": ["doduo"]}, "LAMMPS/3Mar2020-foss-2019b-Python-3.7.4-kokkos": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/3Mar2020-intel-2019b-Python-3.7.4-kokkos": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/3Mar2020-intel-2020a-Python-3.8.2-kokkos": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/7Aug2019-foss-2019b-Python-3.7.4-kokkos": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/7Aug2019-intel-2019b-Python-3.7.4-kokkos-OCTP": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/23Jun2022-foss-2021a-kokkos": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/7Aug2019-intel-2019b-Python-3.7.4-kokkos": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "LAMMPS is a classical molecular dynamics code, and an acronymfor Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS haspotentials for solid-state materials (metals, semiconductors) and soft matter(biomolecules, polymers) and coarse-grained or mesoscopic systems. It can beused to model atoms or, more generically, as a parallel particle simulator atthe atomic, meso, or continuum scale. LAMMPS runs on single processors or inparallel using message-passing techniques and a spatial-decomposition of thesimulation domain. The code is designed to be easy to modify or extend with newfunctionality.", "homepage": "https://lammps.sandia.gov/"}, "LASTZ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LASTZ/1.04.22-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LASTZ/1.04.03-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.", "homepage": "https://www.bx.psu.edu/~rsharris/lastz/"}, "LDC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LDC/1.24.0-x86_64": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LDC/1.30.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LDC/0.17.6-x86_64": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "LDC/1.25.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The LLVM-based D Compiler", "homepage": "https://wiki.dlang.org/LDC"}, "leafcutter": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"leafcutter/0.2.9-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Leafcutter quantifies RNA splicing variation using short-read RNA-seq data. The core idea is to leverage spliced reads (reads that span an intron) to quantify (differential) intron usage across samples. The advantages of this approach include: easy detection of novel introns, modeling of more complex splicing events than exonic PSI, avoiding the challenge of isoform abundance estimation, simple, computationally efficient algorithms scaling to 100s or even 1000s of samples. For details please see our bioRxiv preprint and corresponding Nature Genetics publication.", "homepage": "http://davidaknowles.github.io/leafcutter/index.html"}, "leidenalg": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"leidenalg/0.8.7-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ddt-1.4.2, leidenalg-0.8.7"}, "leidenalg/0.8.8-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ddt-1.4.4, leidenalg-0.8.8"}, "leidenalg/0.9.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ddt-1.6.0, leidenalg-0.9.1"}, "leidenalg/0.10.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ddt-1.7.2, leidenalg-0.10.2"}, "leidenalg/0.8.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "ddt-1.4.1, leidenalg-0.8.2"}, "leidenalg/0.8.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ddt-1.4.2, leidenalg-0.8.3"}, "leidenalg/0.8.3-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "ddt-1.4.2, leidenalg-0.8.3"}}, "description": "Implementation of the Leiden algorithm for various qualityfunctions to be used with igraph in Python.", "homepage": "https://github.com/vtraag/leidenalg"}, "LERC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LERC/4.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LERC/4.0.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LERC/4.0.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "LERC is an open-source image or raster format which supports rapid encoding and decodingfor any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding,so the precision of the original input image is preserved (within user defined error bounds).", "homepage": "https://github.com/Esri/lerc"}, "LevelDB": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LevelDB/1.22-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "leveldb-0.201"}}, "description": "LevelDB is a fast key-value storage library written at Google that provides anordered mapping from string keys to string values.", "homepage": "https://github.com/google/leveldb"}, "Levenshtein": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Levenshtein/0.24.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Levenshtein-0.24.0, rapidfuzz-3.6.1"}}, "description": "Python extension for computing string edit distances and similarities.", "homepage": "https://pypi.org/project/python-Levenshtein/"}, "lftp": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"lftp/4.9.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "LFTP is a sophisticated ftp/http client, and a file transfer program supportinga number of network protocols. Like BASH, it has job control and uses the readline library forinput. It has bookmarks, a built-in mirror command, and can transfer several files in parallel.It was designed with reliability in mind.", "homepage": "https://lftp.yar.ru"}, "LIANA+": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"], "versions": {"LIANA+/1.0.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"], "extensions": "liana-1.0.1, mizani-0.9.3, mudata-0.2.3, plotnine-0.10.1"}}, "description": "LIANA+ is a scalable framework that integrates and extends existing methods and knowledge to studycell-cell communication in single-cell, spatially-resolved, and multi-modal omics data.", "homepage": "https://liana-py.readthedocs.io"}, "libaec": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libaec/1.0.6-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers(samples). The library achieves best results for low entropy data as often encountered in space imaginginstrument data or numerical model output from weather or climate simulations. 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basic functionalities for reading, writing and manipulating large images of arbitrary dimensionality. Its main contributions are n-dimensional versions of popular image filters, a collection of image feature extractors, ready to be used with scikit-learn, and an exhaustive n-dimensional graph-cut package.", "homepage": "https://pypi.org/project/MedPy/"}, "MEGAHIT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MEGAHIT/1.2.9-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MEGAHIT/1.2.9-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MEGAHIT/1.2.9-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MEGAHIT/1.2.9-GCCcore-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "An ultra-fast single-node solution for large and complexmetagenomics assembly via succinct de Bruijn graph", "homepage": "https://github.com/voutcn/megahit"}, "Megalodon": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Megalodon/2.3.5-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "mappy-2.22, megalodon-2.3.5, ont-fast5-api-4.0.0, ont_pyguppy_client_lib-5.0.16, progressbar33-2.4"}, "Megalodon/2.3.5-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mappy-2.22, megalodon-2.3.5, ont-fast5-api-4.0.0, ont_pyguppy_client_lib-5.0.16, progressbar33-2.4"}}, "description": "Megalodon is a research command line tool to extract high accuracy modified base and sequence variantcalls from raw nanopore reads by anchoring the information rich basecalling neural network output to a referencegenome/transriptome.", "homepage": "https://github.com/nanoporetech/megalodon"}, "MEGAN": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MEGAN/6.25.3-Java-17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MEGAN is a comprehensive toolbox for interactively analyzing microbiome data", "homepage": "http://megan.informatik.uni-tuebingen.de/"}, "MEME": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MEME/5.4.1-gompi-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MEME/5.5.4-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The MEME Suite allows you to: * discover motifs using MEME, DREME (DNA only) or GLAM2 on groups of related DNA or protein sequences, * search sequence databases with motifs using MAST, FIMO, MCAST or GLAM2SCAN, * compare a motif to all motifs in a database of motifs, * associate motifs with Gene Ontology terms via their putative target genes, and * analyse motif enrichment using SpaMo or CentriMo.", "homepage": "https://meme-suite.org/meme/index.html"}, "Mercurial": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Mercurial/6.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Mercurial is a free, distributed source control management tool. It efficiently handles projectsof any size and offers an easy and intuitive interface.", "homepage": "https://www.mercurial-scm.org"}, "Mesa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Mesa/19.1.7-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Mesa/20.2.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/21.1.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/21.1.7-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/22.0.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/22.2.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/23.1.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/19.0.1-GCCcore-8.2.0": {"clusters": ["doduo"]}, "Mesa/19.2.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Mesa/20.0.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.", "homepage": "https://www.mesa3d.org/"}, "meson-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"meson-python/0.13.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "meson-python-0.13.2, pyproject-metadata-0.7.1"}, "meson-python/0.15.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "meson-python-0.15.0, pyproject-metadata-0.7.1"}}, "description": "Python build backend (PEP 517) for Meson projects", "homepage": "https://github.com/mesonbuild/meson-python"}, "Meson": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Meson/0.55.1-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.55.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.58.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.58.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.59.1-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["accelgor", "donphan", "joltik", "skitty"]}, "Meson/0.62.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.64.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/1.1.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/1.2.3-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.50.0-GCCcore-8.2.0-Python-3.7.2": {"clusters": ["doduo"]}, "Meson/0.51.2-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Meson/0.53.2-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.", "homepage": "https://mesonbuild.com"}, "MetaBAT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MetaBAT/2.15-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MetaBAT/2.15-gompi-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "An efficient tool for accurately reconstructing single genomes from complex microbial communities", "homepage": "https://bitbucket.org/berkeleylab/metabat"}, "MetaEuk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MetaEuk/6-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MetaEuk/4-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs.", "homepage": "https://metaeuk.soedinglab.org"}, "MetaPhlAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MetaPhlAn/4.0.6-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "hclust2-1.0.0, MetaPhlAn-4.0.6"}}, "description": "MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data", "homepage": "https://github.com/biobakery/MetaPhlAn"}, "methylpy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"methylpy/1.2.9-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Bisulfite sequencing data processing and differential methylation analysis.", "homepage": "https://pypi.python.org/pypi/methylpy"}, "METIS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"METIS/5.1.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.", "homepage": "http://glaros.dtc.umn.edu/gkhome/metis/metis/overview"}, "mgen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mgen/1.2.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Convenient matrix generation functions", "homepage": "https://github.com/NOhs/mgen/tree/master"}, "mgltools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mgltools/1.5.7": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "The MGLTools software suite can be used for visualization and analysis of molecular structures and comprises the Python Molecular Viewer (PMV, a general purpose molecular viewer), AutoDockTools (ADT, a set of PMV commands specifically developed to support AutoDock users) and Vision (a visual programming environment).", "homepage": "https://ccsb.scripps.edu/mgltools/"}, "MIGRATE-N": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MIGRATE-N/5.0.4-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Migrate estimates population parameters, effective population sizesand migration rates of n populations, using genetic data. It uses a coalescent theory approach taking into account history of mutations and uncertainty of the genealogy.", "homepage": "https://peterbeerli.com/migrate-html5/index.html"}, "Mikado": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Mikado/2.3.4-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "marshmallow-3.14.1, marshmallow_dataclass-8.5.3, Mikado-2.3.4, mypy_extensions-1.0.0, python-rapidjson-1.10, SQLAlchemy-2.0.20, SQLAlchemy-Utils-0.41.1, typeguard-4.1.2, typing_extensions-4.7.1, typing_inspect-0.9.0"}}, "description": "Mikado is a lightweight Python3 pipeline to identify the most useful or \u201cbest\u201d set of transcripts from multiple transcript assemblies. Our approach leverages transcript assemblies generated by multiple methods to define expressed loci, assign a representative transcript and return a set of gene models that selects against transcripts that are chimeric, fragmented or with short or disrupted CDS.", "homepage": "https://github.com/EI-CoreBioinformatics/mikado"}, "Miniconda3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Miniconda3/22.11.1-1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Miniconda3/23.5.2-0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Miniconda3/4.8.3": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Miniconda3/4.9.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Miniconda3/4.7.10": {"clusters": ["skitty"]}}, "description": "Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.", "homepage": "https://docs.conda.io/en/latest/miniconda.html"}, "minimap2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"minimap2/2.20-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "minimap2/2.22-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "minimap2/2.24-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "minimap2/2.24-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "minimap2/2.26-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "minimap2/2.26-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "minimap2/2.17-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "minimap2/2.17-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "minimap2/2.18-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "minimap2/2.20-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Minimap2 is a fast sequence mapping and alignmentprogram that can find overlaps between long noisy reads, or map longreads or their assemblies to a reference genome optionally with detailedalignment (i.e. CIGAR). At present, it works efficiently with querysequences from a few kilobases to ~100 megabases in length at an errorrate ~15%. Minimap2 outputs in the PAF or the SAM format. On limitedtest data sets, minimap2 is over 20 times faster than most otherlong-read aligners. It will replace BWA-MEM for long reads and contigalignment.", "homepage": "https://github.com/lh3/minimap2"}, "Minipolish": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Minipolish/0.1.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "A tool for Racon polishing of miniasm assemblies", "homepage": "https://github.com/rrwick/Minipolish"}, "minizip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"minizip/1.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Mini zip and unzip based on zlib", "homepage": "https://www.winimage.com/zLibDll/minizip.html"}, "MinPath": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MinPath/1.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MinPath/1.4-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.", "homepage": "https://omics.informatics.indiana.edu/MinPath"}, "MitoHiFi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MitoHiFi/3.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "dna-features-viewer-3.1.2, MitoHiFi-3.2, mitos-2.1.3"}}, "description": "MitoHiFi is a Python workflow that assembles mitogenomes from Pacbio HiFi reads", "homepage": "https://github.com/marcelauliano/MitoHiFi"}, "MiXCR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MiXCR/4.6.0-Java-17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MiXCR/3.0.13-Java-11": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoiresfrom any type of sequencing data.", "homepage": "https://milaboratory.com/software/mixcr"}, "mkl-service": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mkl-service/2.3.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "mkl-service/2.3.0-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"]}, "mkl-service/2.3.0-intel-2020b": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "Python hooks for Intel(R) Math Kernel Library runtime control settings.", "homepage": "https://github.com/IntelPython/mkl-service"}, "MMseqs2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MMseqs2/13-45111-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MMseqs2/13-45111-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MMseqs2/13-45111-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MMseqs2/14-7e284-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MMseqs2/14-7e284-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MMseqs2/10-6d92c-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MMseqs2/10-6d92c-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MMseqs2/11-e1a1c-iimpi-2019b": {"clusters": ["doduo", "skitty"]}, "MMseqs2/12-113e3-gompi-2020b": {"clusters": ["doduo"]}, "MMseqs2/13-45111-20211006-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik"]}, "MMseqs2/13-45111-20211019-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MMseqs2: ultra fast and sensitive search and clustering suite", "homepage": "https://mmseqs.com"}, "ModelTest-NG": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"ModelTest-NG/0.1.7-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments.ModelTest-NG supersedes jModelTest and ProtTest in one single tool, with graphical and command console interfaces.", "homepage": "https://github.com/ddarriba/modeltest"}, "Molekel": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Molekel/5.4.0-Linux_x86_64": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Molekel is an open-source multi-platform molecular visualization program.", "homepage": "http://ugovaretto.github.io/molekel/wiki/pmwiki.php/Main/HomePage.html"}, "molmod": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"molmod/1.4.5-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "molmod/1.4.5-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "molmod/1.4.5-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MolMod is a Python library with many compoments that are useful to write molecular modeling programs.", "homepage": "https://molmod.github.io/molmod/"}, "MONAI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MONAI/1.0.1-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "fire-0.5.0, gdown-4.7.1, lmdb-1.4.1, MONAI-1.0.1, termcolor-2.3.0"}, "MONAI/1.0.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "MONAI-1.0.1"}}, "description": "MONAI is a PyTorch-based, open-source framework for deep learning in healthcareimaging, part of PyTorch Ecosystem.", "homepage": "https://monai.io/"}, "Monocle3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Monocle3/1.3.1-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "biglm-0.9-2.1, furrr-0.3.1, ggrastr-1.0.1, grr-0.9.5, leidenbase-0.1.9, Matrix.utils-0.9.8, Monocle3-1.3.1, pbmcapply-1.5.1, ragg-1.2.5, RhpcBLASctl-0.21-247.1, rlang-1.0.6, rsample-1.1.1, sf-1.0-9, slider-0.3.0, spdep-1.2-7, speedglm-0.3-5, systemfonts-1.0.4, textshaping-0.3.6, uwot-0.1.14, vctrs-0.5.2, warp-0.2.0"}, "Monocle3/0.2.3-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "furrr-0.2.2, grr-0.9.5, leidenbase-0.1.2, Matrix.utils-0.9.8, Monocle3-0.2.3, pbmcapply-1.5.0, RhpcBLASctl-0.20-137, rlang-0.4.10, rsample-0.0.9, sf-0.9-7, slider-0.1.5, spdep-1.1-5, speedglm-0.3-3, uwot-0.1.10, warp-0.2.0"}}, "description": "An analysis toolkit for single-cell RNA-seq.", "homepage": "https://cole-trapnell-lab.github.io/monocle3/"}, "MOOSE": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MOOSE/2022-06-10-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MOOSE/2021-05-18-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Multiphysics Object-Oriented Simulation Environment (MOOSE) is a finite-element, multiphysicsframework primarily developed by Idaho National Laboratory", "homepage": "https://mooseframework.inl.gov"}, "mosdepth": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mosdepth/0.3.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing", "homepage": "https://github.com/brentp/mosdepth"}, "mpath": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mpath/1.1.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mclass-1.3.4, mpath-1.1.3"}}, "description": "For now it's quit simple and get_path_info()method returns information about given path. It can be eithera directory or a file path.", "homepage": "https://pypi.org/project/mpath/"}, "MPC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MPC/1.2.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPC/1.2.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPC/1.3.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPC/1.3.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPC/1.1.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MPC/1.1.0-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MPC/1.2.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.", "homepage": "http://www.multiprecision.org/"}, "MPFR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MPFR/4.0.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MPFR/4.1.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.1.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.2.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.2.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.0.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.", "homepage": "https://www.mpfr.org"}, "mpi4py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mpi4py/3.1.4-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mpi4py-3.1.4"}, "mpi4py/3.1.4-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mpi4py-3.1.4"}}, "description": "MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.", "homepage": "https://github.com/mpi4py/mpi4py"}, "mrcfile": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mrcfile/1.3.0-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "mrcfile/1.3.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}}, "description": "mrcfile is a Python implementation of the MRC2014 file format, which is used in structural biology to store image and volume data.It allows MRC files to be created and opened easily using a very simple API, which exposes the file\u2019s header and data as numpy arrays. The code runs in Python 2 and 3 and is fully unit-tested.This library aims to allow users and developers to read and write standard-compliant MRC files in Python as easily as possible, and with no dependencies onany compiled libraries except numpy. You can use it interactively to inspect files, correct headers and so on, or in scripts and larger software packages to provide basic MRC file I/O functions.", "homepage": "https://github.com/ccpem/mrcfile"}, "MRtrix": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MRtrix/3.0.4-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MRtrix/3.0-rc-20191217-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MRtrix/3.0-rc-20191217-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MRtrix/3.0.3-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.", "homepage": "http://www.brain.org.au/software/index.html#mrtrix"}, "MSFragger": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MSFragger/4.0-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MSFragger is an ultrafast database search tool for peptide identification in mass spectrometry-based proteomics. It has demonstrated excellent performance across a wide range of datasets and applications. MSFragger is suitable for standard shotgun proteomics analyses as well as large datasets (including timsTOF PASEF data), enzyme unconstrained searches (e.g., peptidome), open database searches (e.g., precursor mass tolerance set to hundreds of Daltons) for identification of modified peptides, and glycopeptide identification (N-linked and O-linked).", "homepage": "https://msfragger.nesvilab.org/"}, "mujoco-py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mujoco-py/2.1.2.14-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "fasteners-0.17.2, glfw-2.5.0, mujoco-py-2.1.2.14"}, "mujoco-py/2.3.7-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-1.4.0, glfw-2.6.2, mujoco-2.3.7"}}, "description": "MuJoCo Python Bindings", "homepage": "https://github.com/deepmind/mujoco"}, "MuJoCo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MuJoCo/2.1.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MuJoCo/2.3.7-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MuJoCo stands for Multi-Joint dynamics with Contact. It is a general purposephysics engine that aims to facilitate research and development in robotics,biomechanics, graphics and animation, machine learning, and other areas whichdemand fast and accurate simulation of articulated structures interacting withtheir environment.", "homepage": "https://mujoco.org/"}, "multichoose": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"multichoose/1.0.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "multichoose/1.0.3-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "generate multiset combinations (n multichoose k).", "homepage": "https://github.com/ekg/multichoose"}, "MultilevelEstimators": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MultilevelEstimators/0.1.0-GCC-11.2.0-Julia-1.7.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "ChainRulesCore-1.15.6, ChangesOfVariables-0.1.4, Compat-4.3.0, DocStringExtensions-0.9.2, FileIO-1.16.0, InverseFunctions-0.1.8, IrrationalConstants-0.1.1, JLD2-0.4.24, JLLWrappers-1.4.1, LogExpFunctions-0.3.18, MacroTools-0.5.10, MultilevelEstimators-0.1.0, OpenSpecFun_jll-0.5.5+0, OrderedCollections-1.4.1, Preferences-1.3.0, Reexport-1.2.2, Requires-1.3.0, SpecialFunctions-1.8.7, TranscodingStreams-0.9.9"}}, "description": "The Julia module for Multilevel Monte Carlo methods", "homepage": "https://github.com/PieterjanRobbe/MultilevelEstimators.jl"}, "MultiQC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MultiQC/1.14-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "coloredlogs-15.0.1, colormath-3.0.0, commonmark-0.9.1, humanfriendly-10.0, lzstring-1.0.4, Markdown-3.4.1, markdown-it-py-2.1.0, mdurl-0.1.2, multiqc-1.14, Pygments-2.14.0, rich-13.3.1, rich-click-1.6.1, spectra-0.0.11"}, "MultiQC/1.8-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.1.1, monotonic-1.5, multiqc-1.8, networkx-2.2, simplejson-3.17.0, spectra-0.0.11"}, "MultiQC/1.8-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.2.1, multiqc-1.8, simplejson-3.17.0, spectra-0.0.11"}, "MultiQC/1.9-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.2.1, multiqc-1.9, simplejson-3.17.0, spectra-0.0.11"}}, "description": "Aggregate results from bioinformatics analyses across many samples into a single report. 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AMOS makes use of it.", "homepage": "http://mummer.sourceforge.net/"}, "MUMPS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MUMPS/5.2.1-foss-2019b-metis": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MUMPS/5.4.1-foss-2021b-metis": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MUMPS/5.4.1-intel-2021b-metis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMPS/5.5.1-foss-2022a-metis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMPS/5.6.1-foss-2022b-metis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMPS/5.6.1-foss-2023a-metis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMPS/5.2.1-foss-2020a-metis": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MUMPS/5.2.1-intel-2019b-metis": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MUMPS/5.2.1-intel-2020a-metis": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MUMPS/5.3.5-foss-2020b-metis": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMPS/5.4.0-foss-2021a-metis": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A parallel sparse direct solver", "homepage": "https://graal.ens-lyon.fr/MUMPS/"}, "muParser": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"muParser/2.3.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "muParser/2.3.2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "muParser is an extensible high performance math expression parser library written in C++. It works by transforming a mathematical expression into bytecode and precalculating constant parts of the expression.", "homepage": "https://beltoforion.de/article.php?a=muparser"}, "MUSCLE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MUSCLE/3.8.31-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MUSCLE/5.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MUSCLE/5.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUSCLE/5.1.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUSCLE/3.8.31-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUSCLE/3.8.1551-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MUSCLE/3.8.1551-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks.", "homepage": "https://drive5.com/muscle/"}, "MXNet": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MXNet/1.9.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Flexible and Efficient Library for Deep Learning", "homepage": "https://mxnet.io/"}, "mygene": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mygene/3.2.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "biothings_client-0.2.6, mygene-3.2.2"}, "mygene/3.2.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "biothings_client-0.3.1, mygene-3.2.2"}}, "description": "Python Client for MyGene.Info services.", 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Thanks to our define-by-run API, the code writtenwith Optuna enjoys high modularity, and the user of Optuna can dynamicallyconstruct the search spaces for the hyperparameters.", "homepage": "https://optuna.org/"}, "ORCA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ORCA/5.0.2-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ORCA/5.0.3-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ORCA/5.0.4-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ORCA/4.2.0-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ORCA/4.2.1-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.", "homepage": "https://orcaforum.kofo.mpg.de"}, "OrthoFinder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OrthoFinder/2.5.5-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OrthoFinder/2.3.8-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OrthoFinder/2.3.11-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OrthoFinder/2.5.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "OrthoFinder/2.5.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics", "homepage": "https://github.com/davidemms/OrthoFinder"}, "Osi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Osi/0.108.7-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Osi/0.108.8-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Osi/0.108.9-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Osi (Open Solver Interface) provides an abstract base class to a generic linearprogramming (LP) solver, along with derived classes for specific solvers. Manyapplications may be able to use the Osi to insulate themselves from a specificLP solver. That is, programs written to the OSI standard may be linked to anysolver with an OSI interface and should produce correct results. The OSI hasbeen significantly extended compared to its first incarnation. Currently, theOSI supports linear programming solvers and has rudimentary support for integerprogramming.", "homepage": "https://github.com/coin-or/Osi"}, "OSU-Micro-Benchmarks": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OSU-Micro-Benchmarks/5.7.1-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.8-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/7.1-1-iimpi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/7.2-gompi-2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.6.3-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.6.3-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.6.3-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.6.3-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.6.3-iimpi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/7.1-1-gompi-2023a": {"clusters": ["doduo"]}, "OSU-Micro-Benchmarks/5.6.3-gompi-2020b": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.7-gompi-2020b": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.7-iimpi-2020b": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.7.1-iimpi-2021a": {"clusters": ["donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.7.1-iompi-2021a": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "OSU Micro-Benchmarks", "homepage": "https://mvapich.cse.ohio-state.edu/benchmarks/"}, "p11-kit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"p11-kit/0.24.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "p11-kit/0.24.0-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process.", "homepage": "https://p11-glue.freedesktop.org/p11-kit.html"}, "pairtools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"pairtools/0.3.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "pairtools is a simple and fast command-line framework to process sequencing data from a Hi-C experiment.", "homepage": "https://github.com/mirnylab/pairtools"}, "Pango": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pango/1.44.7-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Pango/1.47.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.48.5-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.48.8-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.50.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.50.12-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.50.14-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.44.7-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Pango is a library for laying out and rendering of text, with an emphasis on internationalization.Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in thecontext of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.", "homepage": "https://www.pango.org/"}, "parallel-fastq-dump": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"parallel-fastq-dump/0.6.6-GCCcore-9.3.0-SRA-Toolkit-3.0.0-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "parallel-fastq-dump/0.6.7-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "parallel-fastq-dump/0.6.6-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "parallel-fastq-dump/0.6.7-gompi-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "parallel fastq-dump wrapper", "homepage": "https://github.com/rvalieris/parallel-fastq-dump"}, "parallel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"parallel/20220722-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "parallel/20230722-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "parallel/20190922-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "parallel/20200522-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "parallel/20210322-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "parallel/20210622-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "parallel/20210722-GCCcore-11.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "parallel: Build and execute shell commands in parallel", "homepage": "https://savannah.gnu.org/projects/parallel/"}, "parasail": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"parasail/2.4.3-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "parasail/2.5-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "parasail/2.6-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "parasail/2.4.1-foss-2019b": {"clusters": ["doduo"]}, "parasail/2.4.1-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "parasail/2.4.2-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "parasail/2.4.1-GCC-8.3.0": {"clusters": ["donphan", "joltik", "skitty"]}, "parasail/2.4.3-GCC-10.2.0": {"clusters": ["donphan", "joltik"]}}, "description": "parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and semi-global pairwise sequence alignment algorithms.", "homepage": "https://github.com/jeffdaily/parasail"}, "ParaView": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ParaView/5.6.2-foss-2019b-Python-3.7.4-mpi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ParaView/5.8.1-foss-2020b-mpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParaView/5.9.1-foss-2021a-mpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParaView/5.9.1-foss-2021b-mpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParaView/5.10.1-foss-2022a-mpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParaView/5.11.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParaView/5.4.1-foss-2019b-Python-2.7.16-mpi": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParaView/5.8.0-foss-2020a-Python-3.8.2-mpi": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParaView/5.8.1-intel-2020b-mpi": {"clusters": ["doduo"]}, "ParaView/5.9.1-intel-2021a-mpi": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ParaView is a scientific parallel visualizer.", "homepage": "https://www.paraview.org"}, "ParMETIS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ParMETIS/4.0.3-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParMETIS/4.0.3-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParMETIS/4.0.3-gompi-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParMETIS/4.0.3-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParMETIS/4.0.3-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.", "homepage": "http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview"}, "Parsl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Parsl/2023.7.17-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "globus-sdk-3.25.0, parsl-2023.7.17, PyJWT-2.8.0, setproctitle-1.3.2, tblib-1.7.0, typeguard-2.13.3, types-paramiko-3.2.0.1, types-requests-2.31.0.2, types-six-1.16.21.9, types-urllib3-1.26.25.14, typing-extensions-4.7.1"}}, "description": "Parsl extends parallelism in Python beyond a single computer.You can use Parsl just like Python's parallel executors but across multiplecores and nodes. However, the real power of Parsl is in expressing multi-stepworkflows of functions. Parsl lets you chain functions together and will launcheach function as inputs and computing resources are available.", "homepage": "https://parsl-project.org/"}, "PASA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PASA/2.5.3-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.", "homepage": "https://github.com/PASApipeline/PASApipeline"}, "patchelf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"patchelf/0.13-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "patchelf/0.15.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "patchelf/0.17.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "patchelf/0.18.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "patchelf/0.18.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "patchelf/0.10-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "patchelf/0.12-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "patchelf/0.12-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.", "homepage": "https://github.com/NixOS/patchelf"}, "PBGZIP": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"PBGZIP/20160804-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Parallel Block GZIP", "homepage": "https://github.com/nh13/pbgzip"}, "pblat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pblat/2.5.1-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "When the query file format is fasta, you can specify many threads to process it. It can reduce run time linearly, and use almost equal memory as the original blat program. This is useful when you blat a big query file to a huge reference like human whole genome sequence.", "homepage": "https://github.com/icebert/pblat"}, "PCRE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PCRE/8.43-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PCRE/8.44-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.44-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.44-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.45-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.45-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.45-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.45-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.", "homepage": "https://www.pcre.org/"}, "PCRE2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PCRE2/10.33-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PCRE2/10.35-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.36-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.37-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.40-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.40-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.42-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.34-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PCRE2/10.36": {"clusters": ["doduo", "donphan", "joltik"]}, "PCRE2/10.32": {"clusters": ["donphan", "joltik"]}}, "description": "The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.", "homepage": "http://www.pcre.org/"}, "pdsh": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pdsh/2.34-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pdsh/2.34-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pdsh/2.34-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A high performance, parallel remote shell utility", "homepage": "https://github.com/chaos/pdsh"}, "peakdetect": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"peakdetect/1.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Simple peak detection library for Python based on Billauer's work and this gist.", "homepage": "https://github.com/avhn/peakdetect"}, "PEAR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PEAR/0.9.11-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PEAR/0.9.11-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. 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{"petsc4py/3.17.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "petsc4py/3.12.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "petsc4py/3.15.0-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation.", "homepage": "https://bitbucket.org/petsc/petsc4py"}, "Phenoflow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Phenoflow/1.1.2-20200917-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "R package offering functionality for the advanced analysis of microbial flow cytometry data", "homepage": "https://github.com/rprops/Phenoflow_package"}, "phonopy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"phonopy/2.7.1-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Phonopy is an open source package of phonon calculations based on the supercell approach.", "homepage": "https://atztogo.github.io/phonopy/"}, "PHYLIP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PHYLIP/3.697-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PHYLIP is a free package of programs for inferring phylogenies.", "homepage": "https://evolution.genetics.washington.edu/phylip"}, "PhyloPhlAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PhyloPhlAn/3.0.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling ofgenomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use methodfor large-scale microbial genome characterization and phylogenetic analysisat multiple levels of resolution.", "homepage": "https://github.com/biobakery/phylophlan"}, "phyluce": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"phyluce/1.7.3-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "phyluce-1.7.3"}}, "description": "phyluce is a software package for working with data generated from sequence capture of UCE (ultra-conserved element) loci, as first published in [BCF2012]. Specifically, phyluce is a suite of programs to:1) assemble raw sequence reads from Illumina platforms into contigs2) determine which contigs represent UCE loci3) filter potentially paralagous UCE loci4) generate different sets of UCE loci across taxa of interest", "homepage": "https://github.com/faircloth-lab/phyluce"}, "picard": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"picard/2.25.1-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "picard/2.21.6-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "picard/2.25.0-Java-11": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "picard/2.21.1-Java-11": {"clusters": ["donphan", "joltik", "skitty"]}, "picard/2.18.27-Java-1.8": {"clusters": ["skitty"]}}, "description": "A set of tools (in Java) for working with next generation sequencing data in the BAM format.", "homepage": "http://sourceforge.net/projects/picard"}, "PICRUSt2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PICRUSt2/2.5.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "joblib-1.3.1, PICRUSt2-2.5.2"}}, "description": "PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a software for predicting functional abundances based only on marker gene sequences.", "homepage": "https://github.com/picrust/picrust2"}, "pigz": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pigz/2.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pigz/2.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pigz/2.8-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pigz/2.4-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "pigz/2.6-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.", "homepage": "https://zlib.net/pigz/"}, "Pillow-SIMD": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pillow-SIMD/7.1.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow-SIMD/8.2.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Pillow-SIMD/9.2.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow-SIMD/9.5.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow-SIMD/9.5.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow-SIMD/6.0.x.post0-GCCcore-8.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.", "homepage": "https://github.com/uploadcare/pillow-simd"}, "Pillow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pillow/8.0.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/8.2.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/8.3.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Pillow/8.3.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/9.1.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/9.4.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/10.0.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/10.2.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/6.2.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Pillow/7.0.0-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.", "homepage": "https://pillow.readthedocs.org/"}, "Pilon": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pilon/1.23-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pilon/1.23-Java-1.8": {"clusters": ["skitty"]}}, "description": "Pilon is an automated genome assembly improvement and variant detection tool", "homepage": "https://github.com/broadinstitute/pilon"}, "Pint": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pint/0.22-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Pint is a Python package to define, operate andmanipulate physical quantities: the product of a numerical value and aunit of measurement. It allows arithmetic operations between them andconversions from and to different units.", "homepage": "https://github.com/hgrecco/pint"}, "pixman": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pixman/0.38.4-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pixman/0.38.4-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.40.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.40.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.40.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.40.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.42.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.42.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.38.0-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.", "homepage": "http://www.pixman.org/"}, "pkg-config": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pkg-config/0.29.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).", "homepage": "http://www.freedesktop.org/wiki/Software/pkg-config/"}, "pkgconf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pkgconf/1.8.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconf/1.8.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconf/1.8.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconf/1.9.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconf/1.9.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconf/2.0.3-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.", "homepage": "https://github.com/pkgconf/pkgconf"}, "pkgconfig": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pkgconfig/1.5.1-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.1-GCCcore-10.2.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.4-GCCcore-10.3.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.5-GCCcore-11.2.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.5-GCCcore-11.3.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.5-GCCcore-12.2.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.5-GCCcore-12.3.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.1-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "pkgconfig-1.5.1, poetry-0.12.17"}}, "description": "pkgconfig is a Python module to interface with the pkg-config command line tool", "homepage": "https://github.com/matze/pkgconfig"}, "PLAMS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PLAMS/1.5.1-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Python Library for Automating Molecular Simulation (PLAMS) is powerful and flexible Python toolinterfaced to the Amsterdam Modeling Suite engines ADF, BAND, DFTB, MOPAC, ReaxFF, and UFF.", "homepage": "https://www.scm.com/product/plams"}, "PLINK": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"PLINK/2.00a3.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Whole-genome association analysis toolset", "homepage": "https://www.cog-genomics.org/plink/2.0/"}, "plot1cell": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"plot1cell/0.0.1-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "plot1cell/0.0.1-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "plot1cell: a package for advanced single cell data visualization", "homepage": "https://github.com/HaojiaWu/plot1cell"}, "plotly.py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"plotly.py/5.1.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "plotly-5.1.0, tenacity-8.0.1"}, "plotly.py/5.4.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "plotly-5.4.0, 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"donphan", "gallade", "joltik", "skitty"], "extensions": "plotly-4.14.3, retrying-1.3.3"}}, "description": "An open-source, interactive graphing library for Python", "homepage": "https://plot.ly/python"}, "PLUMED": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PLUMED/2.7.2-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PLUMED/2.7.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PLUMED/2.8.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PLUMED/2.9.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PLUMED/2.9.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PLUMED/2.5.3-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PLUMED/2.5.3-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PLUMED/2.6.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PLUMED/2.6.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PLUMED/2.6.0-iomkl-2020a-Python-3.8.2": {"clusters": ["doduo"]}, "PLUMED/2.6.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "PLUMED/2.6.2-intel-2020b": {"clusters": ["doduo", "donphan", "joltik"]}, "PLUMED/2.6.2-intelcuda-2020b": {"clusters": ["joltik"]}}, "description": "PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.", "homepage": "https://www.plumed.org"}, "PMIx": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PMIx/3.1.4-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/3.1.5-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/3.1.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/3.2.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/4.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/4.1.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/4.2.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/4.2.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/4.2.6-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Process Management for Exascale EnvironmentsPMI Exascale (PMIx) represents an attempt toprovide an extended version of the PMI standard specifically designedto support clusters up to and including exascale sizes. The overallobjective of the project is not to branch the existing pseudo-standarddefinitions - in fact, PMIx fully supports both of the existing PMI-1and PMI-2 APIs - but rather to (a) augment and extend those APIs toeliminate some current restrictions that impact scalability, and (b)provide a reference implementation of the PMI-server that demonstratesthe desired level of scalability.", "homepage": "https://pmix.org/"}, "PnetCDF": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"PnetCDF/1.12.3-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PnetCDF/1.12.3-gompi-2022a": {"clusters": ["accelgor", "donphan", "joltik"]}}, "description": "Parallel netCDF: A Parallel I/O Library for NetCDF File Access", "homepage": "https://parallel-netcdf.github.io/"}, "pocl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pocl/1.4-gcccuda-2019b": {"clusters": ["accelgor", "joltik"]}, "pocl/1.8-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pocl/1.8-GCC-11.3.0-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"]}, "pocl/1.8-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pocl/3.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pocl/4.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pocl/1.6-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "pocl/1.6-gcccuda-2020b": {"clusters": ["joltik"]}}, "description": "Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard", "homepage": "https://portablecl.org"}, "pod5-file-format": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pod5-file-format/0.1.8-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "attrs-22.2.0, iso8601-1.1.0, pod5-0.1.8, vbz_h5py_plugin-1.0.1"}}, "description": "POD5 is a file format for storing nanopore dna data in an easily accessible way. The format is able to be written in a streaming manner which allows a sequencing instrument to directly write the format.", "homepage": "https://github.com/nanoporetech/pod5-file-format"}, "poetry": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"poetry/1.0.9-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CacheControl-0.12.6, cachy-0.3.0, cleo-0.7.6, clikit-0.4.3, crashtest-0.3.0, html5lib-1.1, intreehooks-1.0, jeepney-0.4.3, jsonschema-3.2.0, keyring-20.0.1, keyrings.alt-3.4.0, lockfile-0.12.2, msgpack-1.0.0, pastel-0.2.0, pexpect-4.8.0, pkginfo-1.5.0.1, poetry-1.0.9, ptyprocess-0.6.0, pylev-1.3.0, pyrsistent-0.14.11, pytoml-0.1.21, requests-toolbelt-0.8.0, SecretStorage-3.1.2, shellingham-1.3.2, tomlkit-0.5.11, webencodings-0.5.1"}, "poetry/1.5.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "attrs-23.1.0, build-0.10.0, CacheControl-0.12.14, certifi-2023.5.7, charset-normalizer-3.1.0, cleo-2.0.1, crashtest-0.4.1, dulwich-0.21.5, html5lib-1.1, idna-3.4, importlib_metadata-6.7.0, installer-0.7.0, jaraco.classes-3.2.3, jeepney-0.8.0, jsonschema-4.17.3, keyring-23.13.1, lockfile-0.12.2, more-itertools-9.1.0, msgpack-1.0.5, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.8.0, poetry-1.5.1, poetry_core-1.6.1, poetry_plugin_export-1.4.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.19.3, rapidfuzz-2.15.1, requests-2.31.0, requests-toolbelt-1.0.0, SecretStorage-3.3.3, shellingham-1.5.0, six-1.16.0, tomlkit-0.11.8, urllib3-1.26.16, webencodings-0.5.1, zipp-3.15.0"}, "poetry/1.6.1-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "attrs-23.1.0, build-0.10.0, cachecontrol-0.13.1, certifi-2023.7.22, charset-normalizer-3.3.1, cleo-2.0.1, crashtest-0.4.1, dulwich-0.21.6, html5lib-1.1, idna-3.4, importlib_metadata-6.8.0, installer-0.7.0, jaraco.classes-3.3.0, jeepney-0.8.0, jsonschema-4.17.3, keyring-24.2.0, lockfile-0.12.2, more-itertools-10.1.0, msgpack-1.0.7, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.11.0, poetry-1.6.1, poetry_core-1.7.0, poetry_plugin_export-1.5.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.20.0, rapidfuzz-2.15.2, requests-2.31.0, requests-toolbelt-1.0.0, SecretStorage-3.3.3, shellingham-1.5.4, six-1.16.0, tomlkit-0.12.1, urllib3-2.0.7, webencodings-0.5.1, zipp-3.17.0"}, "poetry/1.7.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "attrs-23.2.0, build-1.0.3, CacheControl-0.13.1, certifi-2023.11.17, charset-normalizer-3.3.2, cleo-2.1.0, crashtest-0.4.1, dulwich-0.21.7, fastjsonschema-2.19.1, html5lib-1.1, idna-3.6, importlib_metadata-7.0.1, installer-0.7.0, jaraco.classes-3.3.0, jeepney-0.8.0, jsonschema-4.21.0, jsonschema_specifications-2023.12.1, keyring-24.3.0, lockfile-0.12.2, more-itertools-10.2.0, msgpack-1.0.7, pexpect-4.9.0, pkginfo-1.9.6, platformdirs-3.11.0, poetry-1.7.1, poetry_core-1.8.1, poetry_plugin_export-1.6.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.20.0, rapidfuzz-3.6.1, referencing-0.32.1, requests-2.31.0, requests-toolbelt-1.0.0, rpds_py-0.17.1, SecretStorage-3.3.3, shellingham-1.5.4, six-1.16.0, tomlkit-0.12.3, urllib3-2.1.0, webencodings-0.5.1, zipp-3.17.0"}}, "description": "Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.", "homepage": "https://python-poetry.org"}, "polars": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"polars/0.15.6-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "connectorx-0.3.1, deltalake-0.6.4, maturin-0.14.6, polars-0.15.6, setuptools-65.6.3, setuptools-rust-1.5.2, xlsx2csv-0.8.0"}}, "description": "Lightning-fast DataFrame library for Rust and Python.", "homepage": "https://pola.rs/"}, "poppler": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"poppler/22.01.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "poppler/23.09.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "poppler/21.06.1-GCC-10.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Poppler is a PDF rendering library", "homepage": "https://poppler.freedesktop.org"}, "popscle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"popscle/0.1-beta-20210505-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "popscle/0.1-beta-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A suite ofpopulation scale analysis tools for single-cell genomics data includingimplementation of Demuxlet / Freemuxlet methods and auxilary tools", "homepage": "https://github.com/statgen/popscle"}, "PostgreSQL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PostgreSQL/13.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PostgreSQL/14.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PostgreSQL/16.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.", "homepage": "https://www.postgresql.org/"}, "POT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"POT/0.9.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "autograd-1.6.2, POT-0.9.0, pymanopt-2.1.1, versioneer-0.28"}}, "description": "POT (Python Optimal Transport) is a Python library provide several solvers for optimization problems related to Optimal Transport for signal, image processing and machine learning.", "homepage": "https://github.com/rflamary/POT"}, "powerlaw": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"powerlaw/1.5-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions", "homepage": "http://www.github.com/jeffalstott/powerlaw"}, "PPanGGOLiN": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"PPanGGOLiN/1.1.136-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "colorlover-0.3.0, PPanGGOLiN-1.1.136"}}, "description": "PPanGGOLiN is a software suite used to create and manipulate prokaryoticpangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designedto scale up to tens of thousands of genomes. It has the specificity to partition the pangenome usinga statistical approach rather than using fixed thresholds which gives it the ability to work with low-qualitydata such as Metagenomic Assembled Genomes (MAGs) or Single-cell Amplified Genomes (SAGs) thus taking advantageof large scale environmental studies and letting users study the pangenome of uncultivable species.", "homepage": "https://github.com/labgem/PPanGGOLiN"}, "pplacer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pplacer/1.1.alpha19": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis.", "homepage": "http://matsen.fhcrc.org/pplacer/"}, "preseq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"preseq/3.2.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Software for predicting library complexity and genome coverage in high-throughput sequencing.", "homepage": "https://smithlabresearch.org/software/preseq"}, "presto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"presto/1.0.0-20200718-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "presto/1.0.0-20230113-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "presto/1.0.0-20230501-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Presto performs a fast Wilcoxon rank sum test and auROC analysis.", "homepage": "https://github.com/immunogenomics/presto"}, "pretty-yaml": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"pretty-yaml/21.10.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "PyYAML-based python module to produce pretty and readable YAML-serialized data.This module is for serialization only, see ruamel.yaml module for literate YAMLparsing (keeping track of comments, spacing, line/column numbers of values, etc).", "homepage": "https://github.com/mk-fg/pretty-yaml"}, "PRINSEQ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PRINSEQ/0.20.4-foss-2021b-Perl-5.34.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "Cairo-1.109, Contextual::Return-0.2.1, ExtUtils::Depends-0.8001, ExtUtils::PkgConfig-1.16, Math::Cephes::Matrix-0.5305, Math::MatrixReal-2.13, MIME::Base64-3.15, Pod::Usage-2.0, Statistics::PCA-0.0.1, Text::SimpleTable-2.07"}, "PRINSEQ/0.20.4-foss-2020b-Perl-5.32.0": {"clusters": ["doduo", "donphan", "gallade", "joltik"], "extensions": "Cairo-1.109, Contextual::Return-0.2.1, ExtUtils::Depends-0.8001, ExtUtils::PkgConfig-1.16, Math::Cephes::Matrix-0.5305, Math::MatrixReal-2.13, MIME::Base64-3.15, Pod::Usage-2.0, Statistics::PCA-0.0.1, Text::SimpleTable-2.07"}}, "description": "A bioinformatics tool to PRe-process and show INformation of SEQuence data.", "homepage": "http://prinseq.sourceforge.net"}, "ProBiS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ProBiS/20230403-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "ProBiS algorithm aligns and superimposes complete protein surfaces,surface motifs, or protein binding sites.", "homepage": "http://insilab.org/probis-algorithm"}, "prodigal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"prodigal/2.6.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee.", "homepage": "https://github.com/hyattpd/Prodigal/"}, "PROJ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PROJ/8.0.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PROJ/8.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PROJ/9.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PROJ/9.1.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PROJ/9.2.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PROJ/6.2.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PROJ/7.0.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PROJ/7.2.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Program proj is a standard Unix filter function which convertsgeographic longitude and latitude coordinates into cartesian coordinates", "homepage": "https://proj.org"}, "ProtHint": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ProtHint/2.6.0-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ProtHint/2.6.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ProtHint/2.6.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ProtHint/2.4.0-iccifort-2019.5.281-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "ProtHint is a pipeline for predicting and scoring hints (in the form of introns, start and stop codons) in the genome of interest by mapping and spliced aligning predicted genes to a database of reference protein 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QCA separates the API from the implementation, using plugins known as Providers. The advantage of this model is to allow applications to avoid linking to or explicitly depending on any particular cryptographic library. This allows one to easily change or upgrade crypto implementations without even needing to recompile the application! QCA should work everywhere Qt does, including Windows/Unix/MacOSX.", "homepage": "https://userbase.kde.org/QCA"}, "QCxMS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QCxMS/5.0.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "QCxMS is a quantum chemical based program to calculate electron ionization (EI) and collision induced dissociation (CID) mass spectra using Born-Oppenheimer Molecular Dynamics (BO-MD). 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It will work on both single-end and paired-end data in fastq format. 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Segemehl now supports the SAM format, reads gziped queries to save both disk and memory space and allows bisulfite sequencing mapping and split read mapping.", "homepage": "https://www.bioinf.uni-leipzig.de/Software/segemehl/"}, "SELFIES": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SELFIES/2.1.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Robust representation of semantically constrained graphs, in particular for molecules in chemistry", "homepage": "https://github.com/aspuru-guzik-group/selfies"}, "SemiBin": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SemiBin/2.0.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "SemiBin-2.0.2"}, "SemiBin/2.0.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "SemiBin-2.0.2"}}, "description": "SemiBin: Metagenomic Binning Using Siamese Neural Networks for short and long reads", "homepage": "https://semibin.readthedocs.io"}, "semla": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"semla/1.1.6-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "R interface to the Apache Arrow C++ library", "homepage": "https://cran.r-project.org/web/packages/arrow"}, "Sentence-Transformers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Sentence-Transformers/2.2.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "sentence-transformers-2.2.2"}}, "description": "Sentence Transformers provides an easy method to compute dense vector representations for sentences, paragraphs, and images", "homepage": "https://github.com/UKPLab/sentence-transformers"}, "SentencePiece": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SentencePiece/0.1.96-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SentencePiece/0.1.97-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SentencePiece/0.1.99-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SentencePiece/0.1.85-GCC-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Unsupervised text tokenizer for Neural Network-based text generation.", "homepage": "https://github.com/google/sentencepiece"}, "SEPP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SEPP/4.5.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SEPP/4.5.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SEPP/4.3.10-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SEPP/4.4.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SATe-enabled Phylogenetic Placement - addresses the problem of phylogeneticplacement of short reads into reference alignments and trees.", "homepage": "https://github.com/smirarab/sepp"}, "SeqAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SeqAn/2.4.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SeqAn/2.4.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SeqAn/2.4.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.", "homepage": "https://github.com/seqan/seqan"}, "seqtk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"seqtk/1.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "seqtk/1.4-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "seqtk/1.3-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "seqtk/1.3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. 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Using DRMAA, grid applications builders, portal developers and ISVs can use the same high-level API to link their software with different cluster/resource management systems.", "homepage": "https://github.com/natefoo/slurm-drmaa"}, "SMAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SMAP/4.6.5-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "colorlog-6.7.0, cutadapt-4.1, dnaio-0.10.0, gffpandas-1.2.0, isal-1.1.0, ngs-smap-4.6.5, primer3-py-1.2.0, setuptools-67.6.1, smap-effect-prediction-0.1.2, smap-haplotype-window-1.8.1, xopen-1.7.0"}}, "description": "SMAP is an analysis tool for stack-based NGS read mapping", "homepage": "https://ngs-smap.readthedocs.io"}, "SMC++": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SMC++/1.15.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "SMC++-1.15.4"}}, "description": "SMC++ is a program for estimating the size history of populations from whole genome sequence data.", "homepage": "https://github.com/popgenmethods/smcpp"}, "smfishHmrf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"smfishHmrf/1.3.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "smFish spatial pattern mining and cell type prediction", "homepage": "https://pypi.org/project/smfishHmrf"}, "smithwaterman": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"smithwaterman/20160702-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "smithwaterman/20160702-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "smith-waterman-gotoh alignment algorithm.", "homepage": "https://github.com/ekg/smithwaterman"}, "smooth-topk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "logger-1.4, smooth-topk-1.0-20210817"}, "smooth-topk/1.0-20210817-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "logger-1.4, smooth-topk-1.0-20210817"}}, "description": "Smooth Loss Functions for Deep Top-k Classification", "homepage": "https://github.com/oval-group/smooth-topk"}, "snakemake": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"snakemake/6.10.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "amply-0.1.4, ConfigArgParse-1.5.3, connection_pool-0.0.3, datrie-0.8.2, PuLP-2.5.1, ratelimiter-1.2.0.post0, smart_open-5.2.1, snakemake-6.10.0, stopit-1.1.2, toposort-1.7, wrapt-1.13.3"}, "snakemake/7.18.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "amply-0.1.5, ConfigArgParse-1.5.3, connection_pool-0.0.3, datrie-0.8.2, dpath-2.0.6, plac-1.3.5, PuLP-2.7.0, PyYAML-6.0, ratelimiter-1.2.0.post0, reretry-0.11.1, smart_open-6.2.0, snakemake-7.18.2, stopit-1.1.2, throttler-1.2.1, toposort-1.7, wrapt-1.14.1, yte-1.5.1"}, "snakemake/7.22.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "amply-0.1.5, ConfigArgParse-1.5.3, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.4, humanfriendly-10.0, plac-1.3.5, PuLP-2.7.0, reretry-0.11.8, smart-open-6.3.0, snakemake-7.22.0, stopit-1.1.2, throttler-1.2.2, toposort-1.9, wrapt-1.14.1, yte-1.5.1"}, "snakemake/7.32.3-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "amply-0.1.6, ConfigArgParse-1.7, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.6, fastjsonschema-2.18.0, humanfriendly-10.0, jupyter-core-5.3.1, nbformat-5.9.2, plac-1.3.5, reretry-0.11.8, smart-open-6.3.0, snakemake-7.32.3, stopit-1.1.2, throttler-1.2.2, toposort-1.10, yte-1.5.1"}, "snakemake/8.4.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argparse-dataclass-2.0.0, conda-inject-1.3.1, ConfigArgParse-1.7, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.6, fastjsonschema-2.19.1, humanfriendly-10.0, immutables-0.20, jupyter-core-5.7.1, nbformat-5.9.2, plac-1.4.2, reretry-0.11.8, smart-open-6.4.0, snakemake-8.4.2, snakemake-executor-plugin-cluster-generic-1.0.7, snakemake-executor-plugin-cluster-sync-0.1.3, snakemake-executor-plugin-flux-0.1.0, snakemake-executor-plugin-slurm-0.2.1, snakemake-executor-plugin-slurm-jobstep-0.1.10, snakemake-interface-common-1.15.2, snakemake-interface-executor-plugins-8.2.0, snakemake-interface-storage-plugins-3.0.0, stopit-1.1.2, throttler-1.2.2, toposort-1.10, yte-1.5.4"}, "snakemake/5.26.1-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "amply-0.1.4, ConfigArgParse-1.2.3, datrie-0.8.2, ipython_genutils-0.2.0, jsonschema-3.2.0, jupyter-core-4.6.3, nbformat-5.0.8, PuLP-2.3, pyrsistent-0.17.3, ratelimiter-1.2.0.post0, snakemake-5.26.1, toposort-1.5, traitlets-5.0.5, wrapt-1.12.1"}, "snakemake/6.1.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "amply-0.1.4, ConfigArgParse-1.4, datrie-0.8.2, PuLP-2.4, ratelimiter-1.2.0.post0, smart_open-4.1.2, snakemake-6.1.0, toposort-1.6, wrapt-1.12.1"}}, "description": "The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.", "homepage": "https://snakemake.readthedocs.io"}, "SNAP-ESA-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SNAP-ESA-python/9.0.0-GCCcore-11.2.0-Java-1.8-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"]}, "SNAP-ESA-python/9.0.0-GCCcore-11.2.0-Java-11-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik"]}}, "description": "Python interface to the Sentinel Application Platform (SNAP) API", "homepage": "https://step.esa.int/main/toolboxes/snap/"}, "SNAP-ESA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SNAP-ESA/9.0.0-Java-1.8": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"]}, "SNAP-ESA/9.0.0-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Sentinel Application Platform (SNAP) is a common architecture for allSentinel Toolboxes being jointly developed by Brockmann Consult, SkyWatch andC-S.The SNAP architecture is ideal for Earth Observation processing and analysisdue to the following technological innovations: Extensibility, Portability,Modular Rich Client Platform, Generic EO Data Abstraction, Tiled MemoryManagement, and a Graph Processing Framework.", "homepage": "https://step.esa.int/main/toolboxes/snap/"}, "SNAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SNAP/2.0.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SNAP/2.0.1-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data", "homepage": "https://www.microsoft.com/en-us/research/project/snap"}, "snappy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"snappy/1.1.7-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "snappy/1.1.8-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.8-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.9-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.9-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.9-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.10-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.8-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Snappy is a compression/decompression library. It does not aimfor maximum compression, or compatibility with any other compression library;instead, it aims for very high speeds and reasonable compression.", "homepage": "https://github.com/google/snappy"}, "Sniffles": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Sniffles/2.0.7-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Sniffles-2.0.7"}}, "description": "A fast structural variant caller for long-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data.", "homepage": "https://github.com/fritzsedlazeck/Sniffles"}, "SOAPdenovo-Trans": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SOAPdenovo-Trans/1.0.5-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework,adapt to alternative splicing and different expression level among transcripts.", "homepage": "http://soap.genomics.org.cn/SOAPdenovo-Trans.html"}, "solo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"solo/1.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "commonmark-0.9.1, ConfigArgParse-1.5.3, docrep-0.3.2, opt-einsum-3.3.0, pyDeprecate-0.3.2, pyro-api-0.1.2, pyro-ppl-1.8.4, pytorch-lightning-1.3.8, PyYAML-5.4.1, rich-12.6.0, scvi-tools-0.14.6, solo-sc-1.3, torchmetrics-0.7.3"}}, "description": "Doublet detection via semi-supervised deep learning", "homepage": "https://github.com/calico/solo"}, "SoX": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SoX/14.4.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SoX/14.4.2-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files to other popular audio file types and also apply sound effects and filters during the conversion.", "homepage": "https://sourceforge.net/projects/sox"}, "spaCy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"spaCy/3.4.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "blis-0.7.9, catalogue-2.0.8, confection-0.0.3, cymem-2.0.7, langcodes-3.3.0, ml_datasets-0.2.0, murmurhash-1.0.9, pathy-0.10.1, preshed-3.0.8, pydantic-1.10.2, smart-open-6.3.0, spaCy-3.4.4, spacy-legacy-3.0.10, spacy-loggers-1.0.4, srsly-2.4.5, thinc-8.1.6, tqdm-4.64.1, typer-0.7.0, wasabi-0.10.1"}}, "description": "Industrial-strength Natural Language Processing (NLP) in Python.", "homepage": "https://spacy.io/"}, "SPAdes": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SPAdes/3.15.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SPAdes/3.15.4-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SPAdes/3.15.4-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SPAdes/3.15.5-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SPAdes/3.14.1-GCC-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SPAdes/3.15.2-GCC-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "SPAdes/3.15.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Genome assembler for single-cell and isolates data sets", "homepage": "https://cab.spbu.ru/software/spades/"}, "spaln": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"spaln/2.4.12-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spaln/2.4.12-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spaln/2.4.13f-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spaln/2.4.03-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job.", "homepage": "https://github.com/ogotoh/spaln"}, "Spark": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Spark/3.2.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "py4j-0.10.9.5"}, "Spark/3.5.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "py4j-0.10.9.7"}, "Spark/2.4.5-intel-2019b-Python-3.7.4-Java-1.8": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "py4j-0.10.7"}, "Spark/3.1.1-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "py4j-0.10.9.2"}}, "description": "Spark is Hadoop MapReduce done in memory", "homepage": "https://spark.apache.org"}, "sparse-neighbors-search": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"sparse-neighbors-search/0.7-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "sparse-neighbors-search-0.7"}}, "description": "A Python/C++ implementation of an approximate nearest neighbor search for sparse data structures based on the idea of local sensitiv hash functions.", "homepage": "https://github.com/joachimwolff/sparse-neighbors-search"}, "sparsehash": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"sparsehash/2.0.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "sparsehash/2.0.3-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.", "homepage": "https://github.com/sparsehash/sparsehash"}, "SpatialDE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SpatialDE/1.1.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "NaiveDE-1.2.0, patsy-0.5.3, SpatialDE-1.1.3"}}, "description": "SpatialDE is a method to identify genes which significantly depend on spatial coordinates in non-linear and non-parametric ways. The intended applications are spatially resolved RNA-sequencing from e.g. Spatial Transcriptomics, or in situ gene expression measurements from e.g. SeqFISH or MERFISH.", "homepage": "https://pypi.org/project/SpatialDE"}, "spglib-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"spglib-python/1.16.0-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spglib-python/1.16.1-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spglib-python/1.16.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "spglib-python/1.16.3-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "spglib-python/2.0.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spglib-python/2.0.0-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spglib-python/1.16.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "spglib-python/1.16.0-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C.", "homepage": "https://pypi.python.org/pypi/spglib"}, "SPM": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SPM/12.5_r7771-MATLAB-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "SPM (Statistical Parametric Mapping) refers to the construction and assessment of spatially extended statistical processes used to test hypo- theses about functional imaging data. These ideas have been instantiated in software that is called SPM. The SPM software package has been designed for the analysis of brain imaging data sequences. The sequences can be a series of images from different cohorts, or time-series from the same subject. The current release is designed for the analysis of fMRI, PET, SPECT, EEG and MEG.", "homepage": "https://www.fil.ion.ucl.ac.uk/spm"}, "spoa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"spoa/4.0.7-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "spoa/4.0.7-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "spoa/4.0.7-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spoa/3.4.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "spoa/4.0.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "spoa/4.0.7-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm which is used to generate consensus sequences", "homepage": "https://github.com/rvaser/spoa"}, "SPOTPY": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SPOTPY/1.5.14-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "SPOTPY is a Python framework that enables the use of Computational optimization techniques forcalibration, uncertainty and sensitivity analysis techniques of almost every (environmental-) model.", "homepage": "https://spotpy.readthedocs.io"}, "SQLite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SQLite/3.29.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.31.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.33.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.35.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, 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"gallade", "joltik", "skitty"]}, "SUNDIALS/5.7.0-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "SUNDIALS/5.7.0-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers", "homepage": "https://computation.llnl.gov/projects/sundials"}, "SuperLU_DIST": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SuperLU_DIST/8.1.0-foss-2022a": {"clusters": ["accelgor", "gallade"]}, "SuperLU_DIST/5.4.0-intel-2020a-trisolve-merge": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.", "homepage": "https://crd-legacy.lbl.gov/~xiaoye/SuperLU/"}, "SUPPA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SUPPA/2.3-20231005-foss-2022b": 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It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. 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Other Synapse clients exist for R, Java, and the web. 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This repository also includes StackedFaith (manuscript in preparation), a method for calculating Faith's PD that isfaster and uses less memory than the Fast UniFrac-based referenceimplementation.", "homepage": "https://github.com/biocore/unifrac-binaries"}, "unixODBC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"unixODBC/2.3.11-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "unixODBC provides a uniform interface betweenapplication and database driver", "homepage": "https://www.unixodbc.org"}, "UnZip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UnZip/6.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "UnZip is an extraction utility for archives compressedin .zip format (also called \"zipfiles\"). 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A distinguishing feature of the Voro++ library is that it carries out cell-based calculations,computing the Voronoi cell for each particle individually. 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Yambo relies on the Kohn-Sham wavefunctions generated by two DFT public codes: abinit, and PWscf.", "homepage": "http://www.yambo-code.org"}, "yaml-cpp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"yaml-cpp/0.7.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "yaml-cpp/0.7.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "yaml-cpp/0.6.3-GCCcore-8.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec", "homepage": "https://github.com/jbeder/yaml-cpp"}, "Yasm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Yasm/1.3.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Yasm: Complete rewrite of the NASM assembler with BSD license", "homepage": "https://www.tortall.net/projects/yasm/"}, "YAXT": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"YAXT/0.9.1-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "YAXT/0.6.2-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Yet Another eXchange Tool", "homepage": "https://www.dkrz.de/redmine/projects/yaxt"}, "Z3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Z3/4.8.11-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Z3/4.8.12-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Z3/4.10.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "z3-solver-4.12.2.0"}, "Z3/4.12.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Z3/4.8.10-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Z3/4.8.9-GCCcore-9.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "Z3 is a theorem prover from Microsoft Research.", "homepage": "https://github.com/Z3Prover/z3"}, "zarr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zarr/2.13.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.10.2, zarr-2.13.3"}, "zarr/2.13.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.10.2, zarr-2.13.3"}, "zarr/2.16.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.11.0, zarr-2.16.0"}}, "description": "Zarr is a Python package providing an implementation of compressed, chunked, N-dimensional arrays, designed for use in parallel computing.", "homepage": "https://zarr.readthedocs.io/en/stable/"}, "Zeo++": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Zeo++/0.3-intel-compilers-2023.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Zeo++ is a software package for analysis of crystalline porous materials. Zeo++ can be used to perform geometry-based analysis of structure and topology of the void space inside a material, to assemble or alternate structures as well as to generate structure representations to be used in structure similarity calculations. Zeo++ can be used to either analyze a single structure or perform high-throughput analysis of a large database.", "homepage": "https://www.zeoplusplus.org/"}, "ZeroMQ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ZeroMQ/4.3.2-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.", "homepage": "https://www.zeromq.org/"}, "zfp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zfp/1.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "zfp is a compressed format for representing multidimensional floating-point and integer arrays.zfp provides compressed-array classes that support high throughput read and write random access to individual arrayelements. zfp also supports serial and parallel (OpenMP and CUDA) compression of whole arrays, e.g., for applicationsthat read and write large data sets to and from disk.", "homepage": "https://github.com/LLNL/zfp"}, "Zip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Zip/3.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Zip/3.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Zip is a compression and file packaging/archive utility.Although highly compatible both with PKWARE's PKZIP and PKUNZIPutilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectiveshave been portability and other-than-MSDOS functionality", "homepage": "http://www.info-zip.org/Zip.html"}, "zlib-ng": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zlib-ng/2.0.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "zlib data compression library for the next generation systems", "homepage": "https://github.com/zlib-ng/zlib-ng"}, "zlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zlib/1.2.11-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11": {"clusters": 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"gallade", "joltik", "skitty"]}, "zstd/1.5.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zstd/1.5.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zstd/1.5.5-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zstd/1.4.4-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.", "homepage": "https://facebook.github.io/zstd"}, "zUMIs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zUMIs/2.9.7-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A fast and flexible pipeline to process RNA sequencing data with UMIs.", "homepage": "https://github.com/sdparekh/zUMIs"}, "ABINIT": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ABINIT/9.2.1-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ABINIT/9.4.1-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "ABINIT/9.10.3-intel-2022a": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure ofsystems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), usingpseudopotentials and a planewave or wavelet basis.", "homepage": "https://www.abinit.org/"}, "ABRA2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ABRA2/2.22-iccifort-2019.5.281": {"clusters": ["doduo"]}, "ABRA2/2.23-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ABRA2/2.23-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Assembly Based ReAligner", "homepage": "https://github.com/mozack/abra2"}, "ABRicate": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ABRicate/0.9.9-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Mass screening of contigs for antimicrobial and virulence genes", "homepage": "https://github.com/tseemann/abricate"}, "ACTC": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ACTC/1.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "ACTC converts independent triangles into triangle strips or fans.", "homepage": "https://sourceforge.net/projects/actc"}, "ADMIXTURE": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ADMIXTURE/1.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.", "homepage": "https://dalexander.github.io/admixture/"}, "alevin-fry": {"clusters": ["doduo"], "versions": {"alevin-fry/0.4.3-GCCcore-11.2.0": {"clusters": ["doduo"]}}, "description": "alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.", "homepage": "https://github.com/COMBINE-lab/alevin-fry"}, "Altair-EDEM": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"Altair-EDEM/2021.2": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "EDEM is high-performance software for bulk and granular material simulation.", "homepage": "https://www.altair.com/edem"}, "AmberMini": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"AmberMini/16.16.0-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A stripped-down set of just antechamber, sqm, and tleap.", "homepage": "https://github.com/choderalab/ambermini"}, "AmberTools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"AmberTools/20-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "AmberTools consists of several independently developed packages that work well by themselves, and with Amber itself. The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalized Born solvent models.", "homepage": "https://ambermd.org/"}, "antiSMASH": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"antiSMASH/5.1.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "antiSMASH-5.1.2, bcbio-gff-0.6.6, helperlibs-0.1.11, pyScss-1.3.7, pysvg-py3-0.2.2.post3"}, "antiSMASH/5.2.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "antiSMASH-5.2.0, bcbio-gff-0.6.6, helperlibs-0.2.1, pyScss-1.3.7, pysvg-py3-0.2.2.post3"}, "antiSMASH/6.0.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "antiSMASH-6.0.1, bcbio-gff-0.6.8, helperlibs-0.2.1, pyScss-1.3.7, pysvg-py3-0.2.2.post3"}}, "description": "antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes.", "homepage": "https://github.com/antismash/antismash"}, "ANTLR": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ANTLR/2.7.7-GCCcore-8.3.0-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ANTLR/2.7.7-GCCcore-10.3.0-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions.", "homepage": "https://www.antlr2.org/"}, "ANTs": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ANTs/2.3.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualizing multidimensional data.", "homepage": "https://stnava.github.io/ANTs/"}, "any2fasta": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"any2fasta/0.4.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "any2fasta/0.4.2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Convert various sequence formats to FASTA", "homepage": "https://github.com/tseemann/any2fasta"}, "aria2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"aria2/1.35.0-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "aria2 is a lightweight multi-protocol & multi-source command-line download utility.", "homepage": "https://aria2.github.io"}, "Arlequin": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Arlequin/3.5.2.2-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Arlequin: An Integrated Software for Population Genetics Data Analysis", "homepage": "http://cmpg.unibe.ch/software/arlequin35/Arlequin35.html"}, "arrow": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"arrow/0.17.1-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "R interface to the Apache Arrow C++ library", "homepage": "https://cran.r-project.org/web/packages/arrow"}, "Aspera-CLI": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"Aspera-CLI/3.9.6.1467.159c5b1": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "IBM Aspera Command-Line Interface (the Aspera CLI) isa collection of Aspera tools for performing high-speed, secure datatransfers from the command line. The Aspera CLI is for users andorganizations who want to automate their transfer workflows.", "homepage": "https://asperasoft.com"}, "attrdict": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"attrdict/2.0.1-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes.", "homepage": "https://github.com/bcj/AttrDict"}, "augur": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"augur/7.0.2-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "appdirs-1.4.3, augur-7.0.2, bcbio-gff-0.6.6, ConfigArgParse-1.2.1, datrie-0.8.2, importlib-metadata-1.6.0, ipython-genutils-0.2.0, jsonschema-3.2.0, jupyter-core-4.6.3, nbformat-5.0.5, packaging-20.3, phylo-treetime-0.7.5, pyrsistent-0.16.0, ratelimiter-1.2.0.post0, snakemake-5.10.0, toposort-1.5, traitlets-4.3.3, wrapt-1.12.1"}}, "description": "Pipeline components for real-time phylodynamic analysis", "homepage": "https://github.com/nextstrain/augur"}, "AutoGeneS": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"AutoGeneS/1.0.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.7.6, autogenes-1.0.4, cachetools-4.2.2, natsort-7.1.1"}}, "description": "AutoGeneS automatically extracts informative genes and reveals the cellular heterogeneityof bulk RNA samples.", "homepage": "https://github.com/theislab/AutoGeneS"}, "AutoMap": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"AutoMap/1.0-foss-2019b-20200324": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Tool to find regions of homozygosity (ROHs) from sequencing data.", "homepage": "https://github.com/mquinodo/AutoMap"}, "babl": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"babl/0.1.86-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "babl is pixel encoding and color space conversion engine in C", "homepage": "https://www.gegl.org/babl"}, "bam-readcount": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"bam-readcount/0.8.0-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Count DNA sequence reads in BAM files", "homepage": "https://github.com/genome/bam-readcount"}, "BAMSurgeon": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"BAMSurgeon/1.2-GCC-8.3.0-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Tools for adding mutations to existing .bam files, used for testing mutation callers", "homepage": "https://github.com/adamewing/bamsurgeon"}, "BatMeth2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BatMeth2/2.1-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "An Integrated Package for Bisulfite DNA Methylation Data Analysis with Indel-sensitive Mapping.", "homepage": "https://github.com/GuoliangLi-HZAU/BatMeth2"}, "BayeScan": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BayeScan/2.1-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations.", "homepage": "http://cmpg.unibe.ch/software/BayeScan"}, "BayeScEnv": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"BayeScEnv/1.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}, "BayeScEnv/1.1-iccifort-2019.5.281": {"clusters": ["doduo"]}}, "description": "BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detectlocal adaptation.", "homepage": "https://github.com/devillemereuil/bayescenv"}, "BerkeleyGW": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BerkeleyGW/2.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BerkeleyGW/2.1.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The BerkeleyGW Package is a set of computer codes that calculates the quasiparticle properties and the optical responses of a large variety of materials from bulk periodic crystals to nanostructures such as slabs, wires and molecules.", "homepage": "https://www.berkeleygw.org"}, "BiG-SCAPE": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BiG-SCAPE/1.0.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BiG-SCAPE and CORASON provide a set of tools to explore the diversity of biosynthetic gene clusters (BGCs) across large numbers of genomes, by constructing BGC sequence similarity networks, grouping BGCs into gene cluster families, and exploring gene cluster diversity linked to enzyme phylogenies.", "homepage": "https://bigscape-corason.secondarymetabolites.org/index.html"}, "BinSanity": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BinSanity/0.3.5-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BinSanity contains a suite a scripts designed to cluster contigs generated frommetagenomic assembly into putative genomes.", "homepage": "https://github.com/edgraham/BinSanity/wiki"}, "Bio-EUtilities": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Bio-EUtilities/1.76-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "base-2.23, Bio::ASN1::EntrezGene-1.73, Bio::DB::EUtilities-1.76, Text::Wrap-2013.0523"}}, "description": "BioPerl low-level API for retrieving and storing data from NCBI eUtils", "homepage": "https://github.com/bioperl/bio-eutilities"}, "Bio-SearchIO-hmmer": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Bio-SearchIO-hmmer/1.7.3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatiblewith both version 2 and version 3 of the HMMER package from http://hmmer.org.", "homepage": "https://metacpan.org/pod/Bio::SearchIO::hmmer3"}, "bmtagger": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bmtagger/3.101-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Best Match Tagger for removing human reads from metagenomics datasets", "homepage": "ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/"}, "Bonito": {"clusters": ["doduo", "joltik", "skitty"], "versions": {"Bonito/0.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"], "extensions": "alembic-1.4.2, cliff-3.1.0, cmd2-1.0.1, colorama-0.4.3, colorlog-4.1.0, fast-ctc-decode-0.2.3, ont-bonito-0.1.0, ont-fast5-api-3.0.1, optuna-1.1.0, parasail-1.2, prettytable-0.7.2, progressbar33-2.4, pyperclip-1.7.0, python-editor-1.0.4, SQLAlchemy-1.3.15, stevedore-1.32.0, toml-0.10.0, tqdm-4.31.1"}, "Bonito/0.3.8-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "alembic-1.5.8, cliff-3.7.0, cmaes-0.8.2, cmd2-1.5.0, colorama-0.4.4, colorlog-5.0.1, crf-beam-0.0.1a0, fast-ctc-decode-0.3.0, greenlet-1.0.0, importlib_metadata-4.0.1, mappy-2.18, ont-bonito-0.3.8, ont-fast5-api-3.3.0, optuna-2.7.0, prettytable-2.1.0, progressbar33-2.4, pyperclip-1.8.2, python-editor-1.0.4, seqdist-0.0.3, SQLAlchemy-1.4.11, stevedore-3.3.0"}, "Bonito/0.4.0-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "alembic-1.6.4, cliff-3.7.0, cmaes-0.8.2, cmd2-1.5.0, colorama-0.4.4, colorlog-5.0.1, crf-beam-0.0.1a0, fast-ctc-decode-0.3.0, greenlet-1.1.0, importlib_metadata-4.0.1, mappy-2.18, networkx-2.5.1, ont-bonito-0.4.0, optuna-2.7.0, prettytable-2.1.0, pyperclip-1.8.2, python-editor-1.0.4, seqdist-0.0.3, SQLAlchemy-1.4.15, stevedore-3.3.0"}}, "description": "Convolution Basecaller for Oxford Nanopore Reads", "homepage": "https://github.com/nanoporetech/bonito"}, "Bonnie++": {"clusters": ["doduo"], "versions": {"Bonnie++/2.00a-GCC-10.3.0": {"clusters": ["doduo"]}}, "description": "Bonnie++-1.97: Enhanced performance Test of Filesystem I/O", "homepage": "https://www.coker.com.au/bonnie++"}, "Bottleneck": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Bottleneck/1.3.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Fast NumPy array functions written in C", "homepage": "https://kwgoodman.github.io/bottleneck-doc"}, "bpp": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"bpp/4.4.0-GCC-10.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "The aim of this project is to implement a versatile high-performance version of the BPP software.", "homepage": "https://github.com/bpp/bpp"}, "BSMAPz": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BSMAPz/1.1.1-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Updated and optimized fork of BSMAP.BSMAPz is a short reads mapping program for bisulfite sequencing in DNA methylation study.", "homepage": "https://github.com/zyndagj/BSMAPz"}, "BSseeker2": {"clusters": ["doduo"], "versions": {"BSseeker2/2.1.8-GCC-8.3.0-Python-2.7.16": {"clusters": ["doduo"]}, "BSseeker2/2.1.8-iccifort-2019.5.281-Python-2.7.16": {"clusters": ["doduo"]}}, "description": "BS-Seeker2 is a seamless and versatile pipeline for accurately and fast mapping the bisulfite-treatedreads.", "homepage": "http://pellegrini-legacy.mcdb.ucla.edu/bs_seeker2"}, "buildenv": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"buildenv/default-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "buildenv/default-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "This module sets a group of environment variables for compilers, linkers, maths libraries, etc., that you can use to easily transition between toolchains when building your software. To query the variables being set please use: module show ", "homepage": "None"}, "Calib": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"Calib/0.3.4-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Calib clusters paired-end reads using their barcodes and sequences. Calib is suitable for ampliconsequencing where a molecule is tagged, then PCR amplified with high depth, also known as Unique Molecule Identifier(UMI) sequencing.", "homepage": "https://github.com/vpc-ccg/calib"}, "carputils": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"carputils/20200915-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "carputils-20200915, doxypypy-0.8.8.6, pyDOE-0.3.8"}, "carputils/20210513-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "carputils-20210513, common-0.1.2, doxypypy-0.8.8.6, pyDOE-0.3.8"}}, "description": "carputils is a Python framework for generating and running openCARP examples.", "homepage": "https://git.opencarp.org/openCARP/carputils"}, "CDAT": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"CDAT/8.2.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cdat_info-8.2.1, cdms2-3.1.5, cdtime-3.1.4, cdutil-8.2.1, distarray-2.12.2, dv3d-8.2.1, eofs-1.4.0, genutil-8.2.1, lazy-object-proxy-1.5.2, pycf-1.6.9, thermo-8.1, unidata-2.8, vcs-8.2.1, vcsaddons-8.2.1, wk-8.2.1, xmgrace-2.10"}}, "description": "CDAT is a powerful and complete front-end to a rich set of visual-data exploration and analysis capabilities well suited for data analysis problems.", "homepage": "https://github.com/CDAT/cdat"}, "cdbfasta": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"cdbfasta/0.99-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}, "cdbfasta/0.99-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Fasta file indexing and retrival tool", "homepage": "https://sourceforge.net/projects/cdbfasta"}, "CellRanger": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellRanger/6.0.1": {"clusters": ["doduo", "donphan", "joltik"]}, "CellRanger/6.1.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CellRanger/7.0.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "CellRanger/3.1.0": {"clusters": ["donphan", "joltik"]}, "CellRanger/4.0.0": {"clusters": ["donphan", "joltik"]}}, "description": "Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate gene-cell matrices and perform clustering and gene expression analysis.", "homepage": "https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger"}, "Centrifuge": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Centrifuge/1.0.4-beta-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Classifier for metagenomic sequences", "homepage": "https://ccb.jhu.edu/software/centrifuge"}, "CFDEMcoupling": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"CFDEMcoupling/3.8.0-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CFDEMcoupling is an open source CFD-DEM engine. It provides the possibility to couple the DEM engine LIGGGHTS to a CFD framework.", "homepage": "https://www.cfdem.com/cfdemrcoupling-open-source-cfd-dem-framework"}, "CGmapTools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"CGmapTools/0.1.2-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Command-line Toolset for Bisulfite Sequencing Data Analysis", "homepage": "https://cgmaptools.github.io/"}, "chewBBACA": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"chewBBACA/2.5.5-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "chewBBACA-2.5.5, isodate-0.6.0, rdflib-5.0.0, SPARQLWrapper-1.8.5"}}, "description": "chewBBACA stands for \"BSR-Based Allele Calling Algorithm\".chewBBACA is a comprehensive pipeline including a set of functions for thecreation and validation of whole genome and core genome MultiLocus SequenceTyping (wg/cgMLST) schemas, providing an allele calling algorithm based on BlastScore Ratio that can be run in multiprocessor settings and a set of functions tovisualize and validate allele variation in the loci.", "homepage": "https://github.com/B-UMMI/chewBBACA"}, "CIRI-long": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CIRI-long/1.0.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bwapy-0.1.4, CIRI-long-1.0.2, mappy-2.17"}}, "description": "Circular RNA Identification for Long-Reads Nanopore Sequencing Data", "homepage": "https://github.com/bioinfo-biols/CIRI-long/"}, "CITE-seq-Count": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"CITE-seq-Count/1.4.3-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "CITE-seq-Count-1.4.3, dill-0.3.1.1, multiprocess-0.70.9, pybktree-1.1, pytest-dependency-0.5.1"}}, "description": "A python package that allows to count antibody TAGS from a CITE-seq and/or cell hashing experiment.", "homepage": "https://github.com/Hoohm/CITE-seq-Count"}, "ClustalW2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ClustalW2/2.1-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins.", "homepage": "https://www.ebi.ac.uk/Tools/msa/clustalw2/"}, "CONCOCT": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CONCOCT/1.1.0-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Clustering cONtigs with COverage and ComposiTion (CONCOCT) is aprogram for unsupervised binning of metagenomic contigs by using nucleotidecomposition, coverage data in multiple samples and linkage data from paired endreads.", "homepage": "https://concoct.readthedocs.io"}, "Coreutils": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Coreutils/8.32-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. 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Any published work arising from use of one of the Dalton2016 programs must acknowledge that by a proper reference, https://www.daltonprogram.org/www/citation.html.", "homepage": "https://daltonprogram.org/"}, "deal.II": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"deal.II/9.3.3-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "deal.II is a C++ program library targeted at the computational solution of partial differential equations using adaptive finite elements.", "homepage": "https://www.dealii.org"}, "decona": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"decona/0.1.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads", "homepage": "https://github.com/Saskia-Oosterbroek/decona"}, "Delly": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Delly/0.8.7-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Delly is an integrated structural variant (SV) predictionmethod that can discover, genotype and visualize deletions, tandem duplications,inversions and translocations at single-nucleotide resolution in short-readmassively parallel sequencing data. It uses paired-ends, split-reads andread-depth to sensitively and accurately delineate genomic rearrangementsthroughout the genome.", "homepage": "https://github.com/dellytools/delly/"}, "DFT-D3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DFT-D3/3.2.0-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "DFT-D3/3.2.0-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "DFT-D3 implements a dispersion correction for density functionals, Hartree-Fock and semi-empirical quantum chemical methods.", "homepage": "http://www.thch.uni-bonn.de/tc/index.php?section=downloads&subsection=DFT-D3&lang=english"}, "DIANA": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"DIANA/10.5": {"clusters": ["doduo", "donphan", "joltik"]}, "DIANA/10.4": {"clusters": ["donphan", "joltik"]}}, "description": "DIANA (DIsplacement ANAlyzer) is an extensive multi-purpose finite element software package that is dedicated, but not exclusive, to a wide range of problems arising in Civil engineering including structural, geotechnical, tunnelling, earthquake disciplines and oil & gas engineering.", "homepage": "https://dianafea.com/content/diana"}, "dijitso": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"dijitso/2019.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "dijitso is a Python module for distributed just-in-time shared library building.", "homepage": "https://bitbucket.org/fenics-project/dijitso"}, "DIRAC": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"DIRAC/19.0-intel-2020a-Python-2.7.18-int64": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "DIRAC/19.0-intel-2020a-Python-2.7.18-mpi-int64": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "DIRAC: Program for Atomic and Molecular Direct Iterative Relativistic All-electron Calculations", "homepage": "http://www.diracprogram.org"}, "DL_POLY_Classic": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"DL_POLY_Classic/1.10-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "DL_POLY_Classic/1.10-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "DL_POLY Classic is a general purpose (parallel and serial)molecular dynamics simulation package.", "homepage": "https://gitlab.com/DL_POLY_Classic/dl_poly"}, "dlib": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"dlib/19.22-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "dlib/19.22-foss-2021a-CUDA-11.3.1": {"clusters": ["joltik"]}}, "description": "Dlib is a modern C++ toolkit containing machine learningalgorithms and tools for creating complex software in C++ to solve real worldproblems. It is used in both industry and academia in a wide range of domainsincluding robotics, embedded devices, mobile phones, and large high performancecomputing environments.", "homepage": "https://github.com/davisking/dlib"}, "DMCfun": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"DMCfun/1.3.0-foss-2019b-R-3.6.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "DEoptim-2.2-5, DMCfun-1.3.0, dplyr-1.0.5, glue-1.4.2, lifecycle-1.0.0, optextras-2019-12.4, optimr-2019-12.16, Rcgmin-2013-2.21, rlang-0.4.10, Rvmmin-2018-4.17, setRNG-2013.9-1, tidyselect-1.1.0, vctrs-0.3.6"}}, "description": "Diffusion Model of Conflict (DMC) in Reaction Time Tasks", "homepage": "https://cran.r-project.org/web/packages/DMCfun"}, "DOLFIN": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"DOLFIN/2019.1.0.post0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE (Problem Solving Environment) for ordinary and partial differential equations.", "homepage": "https://bitbucket.org/fenics-project/dolfin"}, "DROP": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DROP/1.0.3-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "about-5.2, click-log-0.3.2, DROP-1.0.3, graphviz-0.16, pandoc-1.0.2, ply-3.11, wbuild-1.8.0"}, "DROP/1.1.0-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "about-5.2, click-log-0.3.2, DROP-1.1.0, graphviz-0.17, pandoc-1.1.0, plumbum-1.7.0, ply-3.11, wbuild-1.8.0"}}, "description": "Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders", "homepage": "https://gagneurlab-drop.readthedocs.io"}, "Dsuite": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Dsuite/20210718-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Fast calculation of the ABBA-BABA statistics across many populations/species", "homepage": "https://github.com/millanek/Dsuite"}, "dtcwt": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"dtcwt/0.12.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Dual-Tree Complex Wavelet Transform library for Python", "homepage": "https://github.com/rjw57/dtcwt"}, "Elk": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Elk/7.0.12-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "An all-electron full-potential linearisedaugmented-plane wave (FP-LAPW) code with many advanced features. Writtenoriginally at Karl-Franzens-Universit\u00e4t Graz as a milestone of theEXCITING EU Research and Training Network, the code is designed to be assimple as possible so that new developments in the field of densityfunctional theory (DFT) can be added quickly and reliably.", "homepage": "http://elk.sourceforge.net/"}, "elprep": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"elprep/5.1.1": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "elPrep is a high-performance tool for analyzing .sam/.bam files (up to and including variant calling) in sequencing pipelines.", "homepage": "https://github.com/ExaScience/elprep"}, "ESMPy": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ESMPy/8.0.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ESMPy/8.0.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ESMPy/8.0.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Earth System Modeling Framework (ESMF) Python Interface", "homepage": "https://earthsystemmodeling.org/esmpy"}, "eSpeak-NG": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"eSpeak-NG/1.50-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The eSpeak NG is a compact open source software text-to-speech synthesizerfor Linux, Windows, Android and other operating systems.It supports more than 100 languages and accents.It is based on the eSpeak engine created by Jonathan Duddington.", "homepage": "https://github.com/espeak-ng/espeak-ng"}, "Excel-Writer-XLSX": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Excel-Writer-XLSX/1.09-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Excel::Writer::XLSX module can be used to create an Excel file in the 2007+ XLSX format.Multiple worksheets can be added to a workbook and formatting can be applied to cells. Text, numbers, and formulascan be written to the cells.", "homepage": "https://metacpan.org/pod/Excel::Writer::XLSX"}, "FabIO": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FabIO/0.11.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FabIO is an I/O library for images produced by 2D X-ray detectors and written in Python. FabIO support images detectors from a dozen of companies (including Mar, Dectris, ADSC, Hamamatsu, Oxford, ...), for a total of 20 different file formats (like CBF, EDF, TIFF, ...) and offers an unified interface to their headers (as a python dictionary) and datasets (as a numpy ndarray of integers or floats).", "homepage": "http://www.silx.org"}, "FALCON": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FALCON/1.8.8-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "FALCON-1.8.8, networkx-1.10, pypeFLOW-20170504"}}, "description": "Falcon: a set of tools for fast aligning long reads for consensus and assembly", "homepage": "https://github.com/PacificBiosciences/FALCON"}, "FastViromeExplorer": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FastViromeExplorer/20180422-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Identify the viruses/phages and their abundance in the viral metagenomics data.", "homepage": "https://code.vt.edu/saima5/FastViromeExplorer"}, "FEniCS": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"FEniCS/2019.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "FEniCS is a computing platform for solving partial differential equations (PDEs).", "homepage": "https://fenicsproject.org/"}, "fermi-lite": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"fermi-lite/20190320-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Standalone C library for assembling Illumina short reads in small regions.", "homepage": "https://github.com/lh3/fermi-lite"}, "festival": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"festival/2.5.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "University of Edinburgh's Festival Speech Synthesis Systems is a free softwaremulti-lingual speech synthesis workbench that runs on multiple-platformsoffering black box text to speech, as well as an open architecture forresearch in speech synthesis.It designed as a component of large speech technology systems.", "homepage": "['http://festvox.org/festival/']"}, "fetchMG": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"fetchMG/1.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The program \u201cfetchMG\u201d was written to extract the 40 MGs from genomes and metagenomes in an easy and accurate manner.", "homepage": "https://vm-lux.embl.de/~mende/fetchMG/about.html"}, "FFC": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FFC/2019.1.0.post0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The FEniCS Form Compiler (FFC) is a compiler for finite element variational forms.", "homepage": "https://bitbucket.org/fenics-project/ffc"}, "FIAT": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FIAT/2019.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The FInite element Automatic Tabulator (FIAT) supportsgeneration of arbitrary order instances of the Lagrange elements onlines, triangles, and tetrahedra. It is also capable of generatingarbitrary order instances of Jacobi-type quadrature rules on the sameelement shapes.", "homepage": "https://bitbucket.org/fenics-project/fiat"}, "Filtlong": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Filtlong/0.2.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter", "homepage": "https://github.com/rrwick/Filtlong"}, "FLAIR": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"FLAIR/1.5-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "kerneltree-0.0.5, ncls-0.0.53"}, "FLAIR/1.5.1-20200630-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "kerneltree-0.0.5, ncls-0.0.53"}}, "description": "FLAIR (Full-Length Alternative Isoform analysis of RNA) for the correction, isoform definition, and alternative splicing analysis of noisy reads. FLAIR has primarily been used for nanopore cDNA, native RNA, and PacBio sequencing reads.", "homepage": "https://github.com/BrooksLabUCSC/flair"}, "FLTK": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FLTK/1.3.5-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FLTK/1.3.5-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. 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"Python binding for the freetype library", "homepage": "https://github.com/rougier/freetype-py"}, "FuSeq": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FuSeq/1.1.2-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "FuSeq is a novel method to discover fusion genes from paired-end RNA sequencing data.", "homepage": "https://github.com/nghiavtr/FuSeq"}, "FusionCatcher": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FusionCatcher/1.20-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FusionCatcher/1.30-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "FusionCatcher searches for novel/known somatic fusion genes, translocations,and chimeras in RNA-seq data (paired-end or single-end reads from Illumina NGSplatforms like Solexa/HiSeq/NextSeq/MiSeq/MiniSeq) from diseased samples.", "homepage": "https://github.com/ndaniel/fusioncatcher"}, "g2clib": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"g2clib/1.6.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "g2clib/1.6.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Library contains GRIB2 encoder/decoder ('C' version).", "homepage": "https://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/"}, "g2lib": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"g2lib/3.1.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Library contains GRIB2 encoder/decoder and search/indexing routines.", "homepage": "https://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/"}, "g2log": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"g2log/1.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "g2log, efficient asynchronous logger using C++11", "homepage": "https://sites.google.com/site/kjellhedstrom2//g2log-efficient-background-io-processign-with-c11"}, "garnett": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"garnett/0.1.20-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "garnett-0.1.20, rly-1.6.2"}}, "description": "Garnett is a software package that faciliates automated cell type classification from single-cellexpression data.", "homepage": "https://cole-trapnell-lab.github.io/garnett"}, "gawk": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gawk/5.1.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The awk utility interprets a special-purpose programming language that makes it possible to handlesimple data-reformatting jobs with just a few lines of code.", "homepage": "https://www.gnu.org/software/gawk"}, "gcloud": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"gcloud/382.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Libraries and tools for interacting with Google Cloud products and services.", "homepage": "https://cloud.google.com/sdk"}, "GDB": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GDB/9.1-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The GNU Project Debugger", "homepage": "https://www.gnu.org/software/gdb/gdb.html"}, "gdbm": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"gdbm/1.18.1-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GNU dbm (or GDBM, for short) is a library of database functions that use extensible hashing and work similar to the standard UNIX dbm. 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Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models.", "homepage": "https://ccb.jhu.edu/software/glimmerhmm"}, "gmsh": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"gmsh/4.5.6-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "gmsh/4.5.6-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.", "homepage": "https://gmsh.info"}, "gobff": {"clusters": ["doduo"], "versions": {"gobff/2020b": {"clusters": ["doduo"]}}, "description": "GCC and GFortran based compiler toolchain with OpenMPI, BLIS, libFLAME, ScaLAPACK and FFTW.", "homepage": "(none)"}, "GPyOpt": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GPyOpt/1.2.6-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "GPy-1.9.9, GPyOpt-1.2.6, paramz-0.9.5"}}, "description": "GPyOpt is a Python open-source library for Bayesian Optimization", "homepage": "https://sheffieldml.github.io/GPyOpt"}, "GraphicsMagick": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GraphicsMagick/1.3.34-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GraphicsMagick is the swiss army knife of image processing.", "homepage": "https://www.graphicsmagick.org/"}, "GraphMap2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GraphMap2/0.6.4-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A highly sensitive and accurate mapper for long, error-prone reads", "homepage": "https://github.com/lbcb-sci/graphmap2"}, "GroIMP": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GroIMP/1.5-Java-1.8": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GroIMP (Growth Grammar-related Interactive Modelling Platform) is a 3D-modelling platform.", "homepage": "http://www.grogra.de/software/groimp"}, "Hadoop": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Hadoop/2.10.0-GCCcore-8.3.0-native": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Hadoop/2.10.0-GCCcore-10.2.0-native": {"clusters": ["doduo"]}, "Hadoop/2.10.0-GCCcore-10.2.0-native-Java-1.8": {"clusters": ["donphan", "joltik"]}}, "description": "Hadoop MapReduce by Cloudera", "homepage": "https://archive.cloudera.com/cdh5/cdh/5/"}, "HAL": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HAL/2.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "addict-2.2.1, blessed-1.18.1, dill-0.3.4, docker-4.3.1, enlighten-1.10.1, newick-1.3.0, prefixed-0.3.2, toil-5.3.0, websocket-client-1.1.0"}}, "description": "HAL is a structure to efficiently store and index multiple genome alignmentsand ancestral reconstructions. HAL is a graph-based representation whichprovides several advantages over matrix/block-based formats such as MAF, such asimproved scalability and the ability to perform queries with respect to anarbitrary reference or subtree.This package includes the HAL API and several analysis and conversion toolswhich are described below. HAL files are presently stored in either HDF5 or mmapformat, but we note that the tools and most of the API are format-independent,so other databases could be implemented in the future.", "homepage": "https://github.com/ComparativeGenomicsToolkit/hal"}, "harmony": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"harmony/0.1.0-20210528-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "harmony/1.0.0-20200224-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets.", "homepage": "https://portals.broadinstitute.org/harmony"}, "HDDM": {"clusters": ["doduo", "skitty"], "versions": {"HDDM/0.7.5-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "skitty"], "extensions": "HDDM-0.7.5, kabuki-0.6.2, patsy-0.5.1, pymc-2.3.7"}, "HDDM/0.7.5-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"], "extensions": "HDDM-0.7.5, kabuki-0.6.2, patsy-0.5.1, pymc-2.3.7"}}, "description": "HDDM is a Python toolbox for hierarchical Bayesian parameter estimation of the Drift Diffusion Model (via PyMC).", "homepage": "http://ski.clps.brown.edu/hddm_docs"}, "hierfstat": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"hierfstat/0.5-7-foss-2020a-R-4.0.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "adegenet-2.1.3, gaston-1.5.6, hierfstat-0.5-7, RcppParallel-5.0.2, spdep-1.1-5"}}, "description": "Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels inthe hierarchy.", "homepage": "https://cran.r-project.org/package=hierfstat"}, "HMMER2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HMMER2/2.3.2-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HMMER2/2.3.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "HMMER2/2.3.2-GCC-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments.", "homepage": "http://hmmer.org"}, "horton": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"horton/2.1.1-intel-2020a-Python-2.7.18": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "HORTON is a Helpful Open-source Research TOol for N-fermion systems, written primarily in the Python programming language. (HORTON is named after the helpful pachyderm, not the Canadian caffeine supply store.) The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost. 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andsomatic variation in tumor/normal sample pairs. Manta discovers, assembles andscores large-scale SVs, medium-sized indels and large insertions within asingle efficient workflow.", "homepage": "https://github.com/Illumina/manta"}, "MariaDB-connector-c": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MariaDB-connector-c/2.3.7-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MariaDB-connector-c/3.1.7-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MariaDB Connector/C is used to connect applications developed in C/C++ to MariaDB and MySQL databases.", "homepage": "https://downloads.mariadb.org/connector-c/"}, "MARS": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MARS/20191101-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "improving Multiple circular sequence Alignment using Refined Sequences", "homepage": "https://github.com/lorrainea/MARS"}, "MATIO": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MATIO/1.5.17-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "matio is an C library for reading and writing Matlab MAT files.", "homepage": "https://sourceforge.net/projects/matio/"}, "mauveAligner": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"mauveAligner/4736-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Mauve is a system for constructing multiple genome alignments in the presenceof large-scale evolutionary events such as rearrangement and inversion.Multiple genome alignments provide a basis for research into comparativegenomics and the study of genome-wide evolutionary dynamics.This version was built without Graphical User Interface.", "homepage": "https://darlinglab.org/mauve/mauve.html"}, "maze": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"maze/20170124-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "In a similar manner to dot plots, maze highlights localsequence similarity between two DNA sequences. 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A python package for simulation and gradient based parameter estimation in the context of geophysical applications.", "homepage": "https://github.com/openforcefield/openforcefield/releases"}, "OpenImageIO": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenImageIO/2.0.12-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenImageIO/2.0.12-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenImageIO is a library for reading and writing images, and a bunch of related classes, utilities, and applications.", "homepage": "https://openimageio.org/"}, "openkim-models": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"openkim-models/20190725-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "openkim-models/20190725-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Open Knowledgebase of Interatomic Models.OpenKIM is an API and a collection of interatomic models (potentials) foratomistic simulations. 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Binds to GDAL forreading and writing data, to GEOS for geometrical operations, and to PROJ for projection conversions and datumtransformations.", "homepage": "https://cran.r-project.org/package=sf"}, "Shasta": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Shasta/0.8.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using DNA reads generatedby Oxford Nanopore flow cells as input. Computational methods used by the Shasta assembler include:Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors inhomopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads. Using in some phases ofthe computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k \u2248 10).", "homepage": "https://github.com/chanzuckerberg/shasta"}, "Sibelia": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Sibelia/3.0.7-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms.", "homepage": "http://bioinf.spbau.ru/en/sibelia"}, "silx": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"silx/0.14.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "hdf5plugin-2.3.1, silx-0.14.0"}}, "description": "The silx project provides a collection of Python packages to support the development of data assessment, reduction and analysis applications at synchrotron radiation facilities.", "homepage": "http://www.silx.org/"}, "SimNIBS": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SimNIBS/3.2.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "SimNIBS-3.2.4"}}, "description": "SimNIBS is a free and open source software package for the Simulation of Non-invasive Brain Stimulation.", "homepage": "https://simnibs.github.io/simnibs"}, "SimpleElastix": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SimpleElastix/1.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Multi-lingual medical image registration library.", "homepage": "https://simpleelastix.github.io"}, "SiNVICT": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SiNVICT/1.0-20180817-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SiNVICT is a tool for the detection of SNVs and indels from cfDNA/ctDNA samples obtained by ultra-deep sequencing.", "homepage": "https://github.com/sfu-compbio/sinvict"}, "SLATEC": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SLATEC/4.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SLATEC Common Mathematical Library, a comprehensive software library containing over 1400 general purpose mathematical and statistical routines written in Fortran 77.", "homepage": "https://www.netlib.org/slatec/"}, "SLiM": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"SLiM/3.4-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "SLiM is an evolutionary simulation framework that combines a powerful engine for population genetic simulations with the capability of modeling arbitrarily complex evolutionary scenarios.", "homepage": "https://messerlab.org/slim"}, "SMV": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SMV/6.7.17-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Smokeview is a visualization program that displays output of FDS and CFAST simulations.", "homepage": "https://github.com/firemodels/smv"}, "snippy": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"snippy/4.6.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Rapid haploid variant calling and core genome alignment", "homepage": "https://github.com/tseemann/snippy"}, "snp-sites": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"snp-sites/2.5.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Finds SNP sites from a multi-FASTA alignment file.", "homepage": "https://sanger-pathogens.github.io/snp-sites/"}, "snpEff": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"snpEff/5.0e-GCCcore-10.2.0-Java-13": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes).", "homepage": "https://pcingola.github.io/SnpEff/"}, "sonic": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"sonic/20180202-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Sonic is a simple algorithm for speeding up or slowing down speech. However,it's optimized for speed ups of over 2X, unlike previous algorithms for changingspeech rate. The Sonic library is a very simple ANSI C library that is designedto easily be integrated into streaming voice applications, like TTS back ends.", "homepage": "https://github.com/espeak-ng/sonic"}, "spatialreg": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"spatialreg/1.1-5-foss-2019b-R-3.6.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "sf-0.8-0, spatialreg-1.1-5, spdep-1.1-3"}, "spatialreg/1.1-8-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "s2-1.0.6, sf-1.0-2, spatialreg-1.1-8, spdep-1.1-8, wk-0.5.0"}}, "description": "A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep', 'sphet' and 'spse'.", "homepage": "https://cran.r-project.org/package=spatialreg"}, "speech_tools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"speech_tools/2.5.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Edinburgh Speech Tools Library is a collection of C++ class,functions and related programs for manipulating the sorts of objectsused in speech processing. It includes support for reading and writingwaveforms, parameter files (LPC, Ceptra, F0) in various formatsand converting between them.It also includes support for linguistic type objects and supportfor various label files and ngrams (with smoothing).", "homepage": "['http://festvox.org/festival/']"}, "Spyder": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Spyder/4.1.5-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "arrow-0.17.0, astroid-2.4.2, async_generator-1.10, autopep8-1.5.4, binaryornot-0.4.4, bleach-3.2.1, cloudpickle-1.6.0, cookiecutter-1.7.2, decorator-4.4.2, diff-match-patch-20200713, flake8-3.8.4, helpdev-0.7.1, isort-5.6.3, jedi-0.17.1, jeepney-0.4.3, jinja2-time-0.2.0, jupyter_client-6.1.7, jupyterlab_pygments-0.1.2, keyring-21.4.0, keyrings.alt-4.0.0, lazy-object-proxy-1.4.3, mccabe-0.6.1, nbclient-0.5.1, nest_asyncio-1.4.1, numpydoc-1.1.0, pathtools-0.1.2, poyo-0.5.0, pycodestyle-2.6.0, pydocstyle-5.1.1, pyflakes-2.2.0, pylint-2.6.0, pyrsistent-0.17.3, python-jsonrpc-server-0.4.0, python-language-server-0.35.1, python-slugify-4.0.1, pyxdg-0.26, QDarkStyle-2.8.1, QtAwesome-1.0.1, qtconsole-4.7.7, QtPy-1.9.0, rope-0.18.0, SecretStorage-3.1.2, spyder-4.1.5, spyder-kernels-1.9.4, text-unidecode-1.3, traitlets-5.0.4, typed_ast-1.4.1, ujson-4.0.1, watchdog-0.10.3, wrapt-1.12.1, wurlitzer-2.0.1, yapf-0.30.0"}}, "description": "Spyder is an interactive Python development environment providing MATLAB-like features in a simple and light-weighted software.", "homepage": "https://github.com/spyder-ide/spyder"}, "SRPRISM": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SRPRISM/3.1.2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Single Read Paired Read Indel Substitution Minimizer", "homepage": "https://github.com/ncbi/SRPRISM"}, "SRST2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SRST2/0.2.0-20210620-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Short Read Sequence Typing for Bacterial Pathogens", "homepage": "https://katholt.github.io/srst2"}, "SSPACE_Basic": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"SSPACE_Basic/2.1.1-GCC-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension", "homepage": "https://github.com/nsoranzo/sspace_basic"}, "SSW": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SSW/1.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. We also provide a software that can do protein and genome alignment directly. Current version of our implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.", "homepage": "https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library"}, "STACEY": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"STACEY/1.2.5-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "The BEAST2 package STACEY can be used for species delimitation and species tree estimation,based on the multispecies coalescent model.", "homepage": "http://www.indriid.com/software.html"}, "Stacks": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Stacks/2.5-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Stacks/2.53-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.", "homepage": "http://catchenlab.life.illinois.edu/stacks"}, "stars": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "lwgeom-0.2-5, ncmeta-0.3.0, RNetCDF-2.3-1, stars-0.4-3"}}, "description": "Reading, manipulating, writing and plotting spatiotemporal arrays (raster and vector data cubes) in R, using GDAL bindings provided by sf, and NetCDF bindings by ncmeta and RNetCDF.", "homepage": "https://cran.r-project.org/package=stars"}, "Stata": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Stata/15": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Stata is a complete, integrated statistical software package that provides everything you need for data analysis, data management, and graphics.", "homepage": "https://www.stata.com/"}, "Statistics-R": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Statistics-R/0.34-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Perl interface with the R statistical program", "homepage": "https://metacpan.org/pod/Statistics::R"}, "STREAM": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"STREAM/5.10-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The STREAM benchmark is a simple synthetic benchmark program that measures sustainable memory bandwidth (in MB/s) and the corresponding computation rate for simple vector kernels.", "homepage": "https://www.cs.virginia.edu/stream/"}, "Structure": {"clusters": ["doduo"], "versions": {"Structure/2.3.4-iccifort-2019.5.281": {"clusters": ["doduo"]}}, "description": "The program structure is a free software package for using multi-locus genotype data to investigate population structure.", "homepage": "https://web.stanford.edu/group/pritchardlab/structure.html"}, "suave": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"suave/20160529-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "suave is an interactive web application to visualize read depthratios between two samples and the structural variants of one of the samples(typically the \"case\" sample in a case/control setup such as tumor/normalcomparison).", "homepage": "https://github.com/dellytools/suave"}, "Subread": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Subread/2.0.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Subread/2.0.3-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "High performance read alignment, quantification and mutation discovery", "homepage": "http://subread.sourceforge.net/"}, "SuperLU": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SuperLU/5.2.2-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.", "homepage": "https://crd-legacy.lbl.gov/~xiaoye/SuperLU/"}, "swissknife": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"swissknife/1.80-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Perl module for reading and writing UniProtKB data in plain text format.", "homepage": "https://sourceforge.net/projects/swissknife/"}, "TALON": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TALON/5.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "TALON is a Python package for identifying and quantifying known andnovel genes/isoforms in long-read transcriptome data sets. TALON is technology-agnosticin that it works from mapped SAM files, allowing data from different sequencing platforms(i.e. PacBio and Oxford Nanopore) to be analyzed side by side.", "homepage": "https://github.com/mortazavilab/TALON"}, "taxator-tk": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"taxator-tk/1.3.3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "taxator-tk/1.3.3-gompi-2020b": {"clusters": ["doduo"]}}, "description": "A set of programs for the taxonomic analysis of nucleotide sequence data", "homepage": "https://github.com/fungs/taxator-tk"}, "tbl2asn": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tbl2asn/20220427-linux64": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "tbl2asn/25.8-linux64": {"clusters": ["skitty"]}}, "description": "Tbl2asn is a command-line program that automates the creation of sequence records for submission to GenBank", "homepage": "https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/"}, "TCLAP": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"TCLAP/1.2.4-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "TCLAP is a small, flexible library that provides a simple interface for defining and accessingcommand line arguments. It was intially inspired by the user friendly CLAP libary.", "homepage": "http://tclap.sourceforge.net/"}, "TEtranscripts": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"TEtranscripts/2.2.0-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "argparse-1.4.0, TEtranscripts-2.2.0"}}, "description": "TEtranscripts and TEcount takes RNA-seq (and similar data) and annotates readsto both genes & transposable elements.TEtranscripts then performs differential analysis using DESeq2.", "homepage": "https://github.com/mhammell-laboratory/TEtranscripts"}, "texinfo": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"texinfo/6.7-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "texinfo/6.7-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Texinfo is the official documentation format of the GNU project.", "homepage": "https://www.gnu.org/software/texinfo/"}, "time": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"time/1.9-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "time/1.9-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running.", "homepage": "https://www.gnu.org/software/time/"}, "tMAE": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tMAE/1.0.0-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Package containing functions to: perform a negative binomial test on allele-specific counts add gnomAD minor allele frequencies MAplot (FC vs total counts) of allele-specific counts and results allelic counts (ALT vs REF)", "homepage": "https://github.com/mumichae/tMAE"}, "tmux": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"tmux/3.2a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "tmux is a terminal multiplexer: it enables a number ofterminals to be created, accessed, and controlled from a single screen. tmuxmay be detached from a screen and continue running in the background, thenlater reattached.", "homepage": "https://github.com/tmux/tmux/"}, "Tombo": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Tombo/1.5.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "mappy-2.17, ont-tombo-1.5.1, pyfaidx-0.5.8"}}, "description": "Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.", "homepage": "https://github.com/nanoporetech/tombo"}, "TranscriptClean": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TranscriptClean/2.0.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "TranscriptClean is a Python program that corrects mismatches, microindels,and noncanonical splice junctions in long reads that have been mapped to the genome.", "homepage": "https://github.com/mortazavilab/TranscriptClean"}, "TransDecoder": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"TransDecoder/5.5.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.", "homepage": "https://github.com/TransDecoder/TransDecoder/wiki"}, "treatSens": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"treatSens/3.0-20201002-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment.", "homepage": "https://github.com/vdorie/treatSens"}, "Trilinos": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Trilinos/12.12.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages.", "homepage": "https://trilinos.org"}, "Trim_Galore": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Trim_Galore/0.6.6-GCC-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Trim Galore is a wrapper around Cutadapt and FastQC toconsistently apply adapter and quality trimming to FastQ files, with extrafunctionality for RRBS data.", "homepage": "https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/"}, "Trycycler": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Trycycler/0.3.3-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes.", "homepage": "https://github.com/rrwick/Trycycler"}, "tsne": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"tsne/0.1.8-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Python library containing T-SNE algorithms.", "homepage": "https://github.com/danielfrg/tsne"}, "UCLUST": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"UCLUST/1.2.22q-i86linux64": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "UCLUST: Extreme high-speed sequence clustering, alignment and database search.", "homepage": "http://www.drive5.com/usearch/index.html"}, "UFL": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"UFL/2019.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Unified Form Language (UFL) is a domain specific language for declaration of finite element discretizations of variational forms. More precisely, it defines a flexible interface for choosing finite element spaces and defining expressions for weak forms in a notation close to mathematical notation.", "homepage": "https://bitbucket.org/fenics-project/ufl"}, "UMI-tools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"UMI-tools/1.0.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "regex-2020.4.4, UMI-tools-1.0.1"}}, "description": "Tools for handling Unique Molecular Identifiers in NGS data sets", "homepage": "https://umi-tools.readthedocs.io"}, "umi4cPackage": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"umi4cPackage/20200116-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "umi4cPackage is a processing and analysis pipeline for UMI-4C experiment.", "homepage": "https://github.com/tanaylab/umi4cpackage"}, "Unicycler": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Unicycler/0.4.8-gompi-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Unicycler is an assembly pipeline for bacterial genomes. 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{"clusters": ["joltik"], "versions": {"cell2location/0.05-alpha-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "anndata-0.7.5, annoy-1.17.0, bbknn-1.3.12, cell2location-0.05-alpha, descartes-1.1.0, get_version-2.1, ipykernel-5.3.4, legacy-api-wrap-1.2, loompy-3.0.6, louvain-0.7.0, mizani-0.7.1, natsort-7.1.0, nose-1.3.7, numpy-groupies-0.9.13, opt-einsum-3.3.0, palettable-3.3.0, plotnine-0.7.0, pytoml-0.1.21, scanpy-1.6.0, sinfo-0.3.1, stdlib-list-0.8.0"}}, "description": "Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)", "homepage": "https://github.com/BayraktarLab/cell2location/"}, "CuPy": {"clusters": ["joltik"], "versions": {"CuPy/8.5.0-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "cupy-8.5.0, fastrlock-0.5"}}, "description": "CuPy is an open-source array library accelerated with NVIDIA CUDA.", "homepage": "https://cupy.dev"}, "cuTENSOR": {"clusters": ["joltik"], "versions": {"cuTENSOR/1.2.2.5-CUDA-11.1.1": {"clusters": ["joltik"]}}, "description": "The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations.", "homepage": "https://developer.nvidia.com/cutensor"}, "GenomeWorks": {"clusters": ["joltik"], "versions": {"GenomeWorks/2021.02.2-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "genomeworks-2021.02.2, sortedcollections-2.1.0"}}, "description": "SDK for GPU accelerated genome assembly and analysis", "homepage": "https://github.com/clara-parabricks/GenomeWorks"}, "gpustat": {"clusters": ["joltik"], "versions": {"gpustat/0.6.0-gcccuda-2020b": {"clusters": ["joltik"], "extensions": "blessings-1.7, gpustat-0.6.0, nvidia-ml-py3-7.352.0"}}, "description": "dstat-like utilization monitor for NVIDIA GPUs", "homepage": "https://github.com/wookayin/gpustat"}, "iccifortcuda": {"clusters": ["joltik"], "versions": {"iccifortcuda/2019b": {"clusters": ["joltik"]}, "iccifortcuda/2020a": {"clusters": ["joltik"]}, "iccifortcuda/2020b": {"clusters": ["joltik"]}}, "description": "Intel C, C++ & Fortran compilers with CUDA toolkit", "homepage": "(none)"}, "iimpic": {"clusters": ["joltik"], "versions": {"iimpic/2019b": {"clusters": ["joltik"]}, "iimpic/2020a": {"clusters": ["joltik"]}, "iimpic/2020b": {"clusters": ["joltik"]}}, "description": "Intel C/C++ and Fortran compilers, alongside Intel MPI and CUDA.", "homepage": "(none)"}, "intelcuda": {"clusters": ["joltik"], "versions": {"intelcuda/2019b": {"clusters": ["joltik"]}, "intelcuda/2020a": {"clusters": ["joltik"]}, "intelcuda/2020b": {"clusters": ["joltik"]}}, "description": "Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL, with CUDA toolkit", "homepage": "(none)"}, "pyro-api": {"clusters": ["joltik"], "versions": {"pyro-api/0.1.2-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "Pyro is a flexible, scalable deep probabilistic programming library built on PyTorch.", "homepage": "https://github.com/pyro-ppl/pyro-api"}, "request": {"clusters": ["joltik"], "versions": {"request/2.88.1-fosscuda-2020b-nodejs-12.19.0": {"clusters": ["joltik"]}}, "description": "Request is designed to be the simplest way possible to make http calls. It supports HTTPS and follows redirects by default.", "homepage": "https://github.com/request/request/"}, "supernova": {"clusters": ["skitty"], "versions": {"supernova/2.0.1": {"clusters": ["skitty"]}}, "description": "Supernova is a software package for de novo assembly from Chromium Linked-Reads that are made from a single whole-genome library from an individual DNA source", "homepage": "https://support.10xgenomics.com/de-novo-assembly/software/overview/latest/welcome"}, "VTune": {"clusters": ["skitty"], "versions": {"VTune/2019_update2": {"clusters": ["skitty"]}}, "description": "Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.", "homepage": "http://software.intel.com/en-us/intel-vtune-amplifier-xe"}}, "time_generated": "Fri, 08 Mar 2024 at 09:35:19 CET"} \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md index 1f8101de1cd8..67489dad6979 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md @@ -6,6 +6,10 @@ hide: ABAQUS ====== + +Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA. + +https://www.simulia.com/products/abaqus_fea.html # Available modules @@ -17,7 +21,7 @@ To start using ABAQUS, load one of these modules using a `module load` command l module load ABAQUS/2023 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md index d37fb672dd2b..80f5f2e46eab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md @@ -6,6 +6,10 @@ hide: ABINIT ====== + +ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure ofsystems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), usingpseudopotentials and a planewave or wavelet basis. + +https://www.abinit.org/ # Available modules @@ -17,7 +21,7 @@ To start using ABINIT, load one of these modules using a `module load` command l module load ABINIT/9.10.3-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md index dd7fc4e0748a..85a5530c8234 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md @@ -6,6 +6,10 @@ hide: ABRA2 ===== + +Assembly Based ReAligner + +https://github.com/mozack/abra2 # Available modules @@ -17,7 +21,7 @@ To start using ABRA2, load one of these modules using a `module load` command li module load ABRA2/2.23-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md index 6d2a7cda0637..606b6dda3fe0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md @@ -6,6 +6,10 @@ hide: ABRicate ======== + +Mass screening of contigs for antimicrobial and virulence genes + +https://github.com/tseemann/abricate # Available modules @@ -17,7 +21,7 @@ To start using ABRicate, load one of these modules using a `module load` command module load ABRicate/0.9.9-gompi-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md index 6a168639f57c..4d7a2162bb2c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md @@ -6,6 +6,10 @@ hide: ABySS ===== + +Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler + +https://www.bcgsc.ca/platform/bioinfo/software/abyss # Available modules @@ -17,7 +21,7 @@ To start using ABySS, load one of these modules using a `module load` command li module load ABySS/2.3.7-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md index ec3ec69b71a5..293df8d8e142 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md @@ -6,6 +6,10 @@ hide: ACTC ==== + +ACTC converts independent triangles into triangle strips or fans. + +https://sourceforge.net/projects/actc # Available modules @@ -17,7 +21,7 @@ To start using ACTC, load one of these modules using a `module load` command lik module load ACTC/1.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md index bdf5c1b96a5d..ffa9cb5868aa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md @@ -6,6 +6,10 @@ hide: ADMIXTURE ========= + +ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm. + +https://dalexander.github.io/admixture/ # Available modules @@ -17,7 +21,7 @@ To start using ADMIXTURE, load one of these modules using a `module load` comman module load ADMIXTURE/1.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AICSImageIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AICSImageIO.md index fb721df03d0c..ff8b6ddafee3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AICSImageIO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AICSImageIO.md @@ -6,6 +6,10 @@ hide: AICSImageIO =========== + +Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python + +https://github.com/AllenCellModeling/aicsimageio # Available modules @@ -17,8 +21,15 @@ To start using AICSImageIO, load one of these modules using a `module load` comm module load AICSImageIO/4.14.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |AICSImageIO/4.14.0-foss-2022a|x|x|x|x|x|x| + + +### AICSImageIO/4.14.0-foss-2022a + +This is a list of extensions included in the module: + +%(namelower)s-4.14.0, elementpath-4.1.5, fsspec-2023.6.0, ome-zarr-0.8.3, ome_types-0.4.3, pydantic_compat-0.1.2, resource_backed_dask_array-0.1.0, xmlschema-2.5.0, xsdata-23.8 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md index 27a3a9d37f92..f785549d5e9f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md @@ -6,6 +6,10 @@ hide: AMAPVox ======= + +LiDAR data voxelisation software + +https://amap-dev.cirad.fr/projects/amapvox # Available modules @@ -17,7 +21,7 @@ To start using AMAPVox, load one of these modules using a `module load` command module load AMAPVox/1.9.4-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMICA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMICA.md index 83739a80b2be..b90c508d7685 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AMICA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AMICA.md @@ -6,6 +6,10 @@ hide: AMICA ===== + +Code for AMICA: Adaptive Mixture ICA with shared components + +https://github.com/sccn/amica # Available modules @@ -17,7 +21,7 @@ To start using AMICA, load one of these modules using a `module load` command li module load AMICA/2024.1.19-intel-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md index 00ab1e86c89a..61511ed2cd6e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md @@ -6,6 +6,10 @@ hide: AMOS ==== + +The AMOS consortium is committed to the development of open-source whole genome assembly software + +http://amos.sourceforge.net # Available modules @@ -17,7 +21,7 @@ To start using AMOS, load one of these modules using a `module load` command lik module load AMOS/3.1.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md index d0093d633832..223e5b057a13 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md @@ -6,6 +6,10 @@ hide: AMPtk ===== + +AMPtk is a series of scripts to process NGS amplicon data using USEARCH and VSEARCH, it can also beused to process any NGS amplicon data and includes databases setup for analysis of fungal ITS, fungal LSU, bacterial16S, and insect COI amplicons. + +https://amptk.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using AMPtk, load one of these modules using a `module load` command li module load AMPtk/1.5.4-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |AMPtk/1.5.4-foss-2021b|x|x|x|-|x|x| + + +### AMPtk/1.5.4-foss-2021b + +This is a list of extensions included in the module: + +amptk-1.5.4, distro-1.7.0, natsort-8.1.0, pyfastx-0.8.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md index aa35b194df36..0e7f5f21329b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md @@ -6,6 +6,10 @@ hide: ANTLR ===== + +ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. + +https://www.antlr2.org/ # Available modules @@ -17,7 +21,7 @@ To start using ANTLR, load one of these modules using a `module load` command li module load ANTLR/2.7.7-GCCcore-10.3.0-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md index d03ed282d2e2..bfbd634d4ba3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md @@ -6,6 +6,10 @@ hide: ANTs ==== + +ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualizing multidimensional data. + +https://stnava.github.io/ANTs/ # Available modules @@ -17,7 +21,7 @@ To start using ANTs, load one of these modules using a `module load` command lik module load ANTs/2.3.2-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md b/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md index 97ed8a5e596b..1406b843ec60 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md @@ -6,6 +6,10 @@ hide: APR-util ======== + +Apache Portable Runtime (APR) util libraries. + +https://apr.apache.org/ # Available modules @@ -17,7 +21,7 @@ To start using APR-util, load one of these modules using a `module load` command module load APR-util/1.6.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/APR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/APR.md index 3f8162ada16d..660cf32383c5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/APR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/APR.md @@ -6,6 +6,10 @@ hide: APR === + +Apache Portable Runtime (APR) libraries. + +https://apr.apache.org/ # Available modules @@ -17,7 +21,7 @@ To start using APR, load one of these modules using a `module load` command like module load APR/1.7.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ARAGORN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ARAGORN.md index 60a42833396f..c6261b8d6844 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ARAGORN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ARAGORN.md @@ -6,6 +6,10 @@ hide: ARAGORN ======= + +a program to detect tRNA genes and tmRNA genes in nucleotide sequences + +http://mbio-serv2.mbioekol.lu.se/ARAGORN/ # Available modules @@ -17,7 +21,7 @@ To start using ARAGORN, load one of these modules using a `module load` command module load ARAGORN/1.2.41-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ASCAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ASCAT.md index 24e2fa230b78..069f84b0eb9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ASCAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ASCAT.md @@ -6,6 +6,10 @@ hide: ASCAT ===== + +ASCAT is a method to derive copy number profiles of tumor cells, accounting for normal cell admixture and tumor aneuploidy. + +https://github.com/VanLoo-lab/ascat # Available modules @@ -17,7 +21,7 @@ To start using ASCAT, load one of these modules using a `module load` command li module load ASCAT/3.1.2-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ASE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ASE.md index 3bb83284e6e5..08637160de16 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ASE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ASE.md @@ -6,6 +6,10 @@ hide: ASE === + +ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language.From version 3.20.1 we also include the ase-ext package, it contains optional reimplementationsin C of functions in ASE. ASE uses it automatically when installed. + +https://wiki.fysik.dtu.dk/ase # Available modules @@ -17,7 +21,7 @@ To start using ASE, load one of these modules using a `module load` command like module load ASE/3.22.1-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -33,3 +37,76 @@ module load ASE/3.22.1-intel-2022a |ASE/3.20.1-foss-2020b|-|x|x|x|x|x| |ASE/3.19.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |ASE/3.19.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### ASE/3.22.1-intel-2022a + +This is a list of extensions included in the module: + +ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.8.2 + +### ASE/3.22.1-intel-2021b + +This is a list of extensions included in the module: + +ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.6.1 + +### ASE/3.22.1-gomkl-2021a + +This is a list of extensions included in the module: + +ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.6.1 + +### ASE/3.22.1-foss-2022a + +This is a list of extensions included in the module: + +ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.8.2 + +### ASE/3.22.1-foss-2021b + +This is a list of extensions included in the module: + +ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.6.1 + +### ASE/3.21.1-fosscuda-2020b + +This is a list of extensions included in the module: + +ase-3.21.1, ase-ext-20.9.0 + +### ASE/3.21.1-foss-2020b + +This is a list of extensions included in the module: + +ase-3.21.1, ase-ext-20.9.0 + +### ASE/3.20.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +ase-3.20.1, click-7.1.2, Flask-1.1.2, itsdangerous-1.1.0, Jinja2-2.11.2, MarkupSafe-1.1.1, Werkzeug-1.0.1 + +### ASE/3.20.1-fosscuda-2020b + +This is a list of extensions included in the module: + +ase-3.20.1, ase-ext-20.9.0 + +### ASE/3.20.1-foss-2020b + +This is a list of extensions included in the module: + +ase-3.20.1, ase-ext-20.9.0 + +### ASE/3.19.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +ase-3.19.0, Click-7.0, Flask-1.1.1, itsdangerous-1.1.0, Jinja2-2.10.3, MarkupSafe-1.1.1, Werkzeug-0.16.0 + +### ASE/3.19.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +ase-3.19.0, Click-7.0, Flask-1.1.1, itsdangerous-1.1.0, Jinja2-2.10.3, MarkupSafe-1.1.1, Werkzeug-0.16.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ATK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ATK.md index c53909cb9b28..608182c69c65 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ATK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ATK.md @@ -6,6 +6,10 @@ hide: ATK === + +ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. + +https://developer.gnome.org/atk/ # Available modules @@ -17,7 +21,7 @@ To start using ATK, load one of these modules using a `module load` command like module load ATK/2.38.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AUGUSTUS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AUGUSTUS.md index 37eaf31deeb2..c4b95dc36739 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AUGUSTUS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AUGUSTUS.md @@ -6,6 +6,10 @@ hide: AUGUSTUS ======== + +AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences + +http://bioinf.uni-greifswald.de/augustus/ # Available modules @@ -17,7 +21,7 @@ To start using AUGUSTUS, load one of these modules using a `module load` command module load AUGUSTUS/3.4.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Abseil.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Abseil.md index d2acd5a41464..c7a0c3215ccf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Abseil.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Abseil.md @@ -6,6 +6,10 @@ hide: Abseil ====== + +Abseil is an open-source collection of C++ library code designed to augment theC++ standard library. The Abseil library code is collected from Google's ownC++ code base, has been extensively tested and used in production, and is thesame code we depend on in our daily coding lives. + +https://abseil.io/ # Available modules @@ -17,7 +21,7 @@ To start using Abseil, load one of these modules using a `module load` command l module load Abseil/20230125.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AdapterRemoval.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AdapterRemoval.md index f275271742e9..bfab99ef0acb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AdapterRemoval.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AdapterRemoval.md @@ -6,6 +6,10 @@ hide: AdapterRemoval ============== + +AdapterRemoval searches for and removes remnant adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. + +https://github.com/MikkelSchubert/adapterremoval # Available modules @@ -17,7 +21,7 @@ To start using AdapterRemoval, load one of these modules using a `module load` c module load AdapterRemoval/2.3.3-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Albumentations.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Albumentations.md index 27e71e8acc80..69f323835ef1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Albumentations.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Albumentations.md @@ -6,6 +6,10 @@ hide: Albumentations ============== + +Albumentations is a Python library for fast and flexible image augmentations + +https://albumentations.ai # Available modules @@ -17,9 +21,22 @@ To start using Albumentations, load one of these modules using a `module load` c module load Albumentations/1.1.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Albumentations/1.1.0-foss-2021b|x|x|x|-|x|x| |Albumentations/1.1.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### Albumentations/1.1.0-foss-2021b + +This is a list of extensions included in the module: + +albumentations-1.1.0, qudida-0.0.4 + +### Albumentations/1.1.0-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +albumentations-1.1.0, qudida-0.0.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaFold.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaFold.md index 5b05333063ad..bf4f7576c41c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaFold.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaFold.md @@ -6,6 +6,10 @@ hide: AlphaFold ========= + +AlphaFold can predict protein structures with atomic accuracy even where nosimilar structure is known.This package of AlphaFold contains patches for ColabFold. + +https://github.com/sokrypton/alphafold # Available modules @@ -17,7 +21,7 @@ To start using AlphaFold, load one of these modules using a `module load` comman module load AlphaFold/2.3.4-foss-2022a-ColabFold ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -33,3 +37,76 @@ module load AlphaFold/2.3.4-foss-2022a-ColabFold |AlphaFold/2.1.1-fosscuda-2020b|x|-|-|-|x|-| |AlphaFold/2.0.0-fosscuda-2020b|x|-|-|-|x|-| |AlphaFold/2.0.0-foss-2020b|-|x|x|x|x|x| + + +### AlphaFold/2.3.4-foss-2022a-ColabFold + +This is a list of extensions included in the module: + +chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1 + +### AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold + +This is a list of extensions included in the module: + +chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1 + +### AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1 + +### AlphaFold/2.3.1-foss-2022a + +This is a list of extensions included in the module: + +chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1 + +### AlphaFold/2.3.0-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +chex-0.1.5, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.7, docker-5.0.3, immutabledict-2.2.1, jmp-0.0.2, ml_collections-0.1.1, PDBFixer-1.7, tabulate-0.8.10, toolz-0.11.2, websocket-client-1.3.3 + +### AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +chex-0.1.3, contextlib2-21.6.0, dm-haiku-0.0.6, dm-tree-0.1.7, docker-5.0.3, immutabledict-2.2.1, jmp-0.0.2, ml_collections-0.1.1, PDBFixer-1.7, tabulate-0.8.10, toolz-0.11.2, websocket-client-1.3.3 + +### AlphaFold/2.2.2-foss-2021a + +This is a list of extensions included in the module: + +chex-0.1.3, contextlib2-21.6.0, dm-haiku-0.0.6, dm-tree-0.1.7, docker-5.0.3, immutabledict-2.2.1, jmp-0.0.2, ml_collections-0.1.1, PDBFixer-1.7, tabulate-0.8.10, toolz-0.11.2, websocket-client-1.3.3 + +### AlphaFold/2.1.2-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1 + +### AlphaFold/2.1.2-foss-2021a + +This is a list of extensions included in the module: + +chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1 + +### AlphaFold/2.1.1-fosscuda-2020b + +This is a list of extensions included in the module: + +chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1 + +### AlphaFold/2.0.0-fosscuda-2020b + +This is a list of extensions included in the module: + +chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1 + +### AlphaFold/2.0.0-foss-2020b + +This is a list of extensions included in the module: + +chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaPulldown.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaPulldown.md index 6fc477cef593..9210caa838f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaPulldown.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaPulldown.md @@ -6,6 +6,10 @@ hide: AlphaPulldown ============= + +AlphaPulldown is a Python package that streamlines protein-proteininteraction screens and high-throughput modelling of higher-order oligomers using AlphaFold-Multimer + +https://github.com/KosinskiLab/AlphaPulldown # Available modules @@ -17,10 +21,29 @@ To start using AlphaPulldown, load one of these modules using a `module load` co module load AlphaPulldown/0.30.7-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |AlphaPulldown/0.30.7-foss-2022a|-|-|x|-|x|-| |AlphaPulldown/0.30.4-fosscuda-2020b|x|-|-|-|x|-| |AlphaPulldown/0.30.4-foss-2020b|x|x|x|x|x|x| + + +### AlphaPulldown/0.30.7-foss-2022a + +This is a list of extensions included in the module: + +AlphaPulldown-0.30.7, importlib-resources-5.13.0 + +### AlphaPulldown/0.30.4-fosscuda-2020b + +This is a list of extensions included in the module: + +AlphaPulldown-0.30.4, contextlib2-21.6.0, dm-haiku-0.0.4, importlib-resources-5.12.0, ml-collections-0.1.1, PDBFixer-1.7, py3Dmol-2.0.1.post1, toolz-0.11.1 + +### AlphaPulldown/0.30.4-foss-2020b + +This is a list of extensions included in the module: + +AlphaPulldown-0.30.4, contextlib2-21.6.0, dm-haiku-0.0.4, importlib-resources-5.12.0, ml-collections-0.1.1, PDBFixer-1.7, py3Dmol-2.0.1.post1, toolz-0.11.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Altair-EDEM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Altair-EDEM.md index c89409f06f3a..dfa53662442d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Altair-EDEM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Altair-EDEM.md @@ -6,6 +6,10 @@ hide: Altair-EDEM =========== + +EDEM is high-performance software for bulk and granular material simulation. + +https://www.altair.com/edem # Available modules @@ -17,7 +21,7 @@ To start using Altair-EDEM, load one of these modules using a `module load` comm module load Altair-EDEM/2021.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Amber.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Amber.md index 832030d4535a..f4ee58cd3c55 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Amber.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Amber.md @@ -6,6 +6,10 @@ hide: Amber ===== + +Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction. + +https://ambermd.org/amber.html # Available modules @@ -17,7 +21,7 @@ To start using Amber, load one of these modules using a `module load` command li module load Amber/22.4-foss-2022a-AmberTools-22.5-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AmberMini.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AmberMini.md index fe3158c3df99..d4499e2104e8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AmberMini.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AmberMini.md @@ -6,6 +6,10 @@ hide: AmberMini ========= + +A stripped-down set of just antechamber, sqm, and tleap. + +https://github.com/choderalab/ambermini # Available modules @@ -17,7 +21,7 @@ To start using AmberMini, load one of these modules using a `module load` comman module load AmberMini/16.16.0-intel-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AmberTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AmberTools.md index 95b3a98df2f3..30fc47cc7c07 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AmberTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AmberTools.md @@ -6,6 +6,10 @@ hide: AmberTools ========== + +AmberTools consists of several independently developed packages that work well by themselves, and with Amber itself. The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalized Born solvent models. + +https://ambermd.org/ # Available modules @@ -17,7 +21,7 @@ To start using AmberTools, load one of these modules using a `module load` comma module load AmberTools/20-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Anaconda3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Anaconda3.md index 6a9512baf087..17164e145f2e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Anaconda3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Anaconda3.md @@ -6,6 +6,10 @@ hide: Anaconda3 ========= + +Built to complement the rich, open source Python community,the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. + +https://www.anaconda.com # Available modules @@ -17,7 +21,7 @@ To start using Anaconda3, load one of these modules using a `module load` comman module load Anaconda3/2023.03-1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Annocript.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Annocript.md index c5d9a7752086..ab2872971824 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Annocript.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Annocript.md @@ -6,6 +6,10 @@ hide: Annocript ========= + +Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes blast analysis with UniProt, NCBI Conserved Domain Database and Nucleotide division adding also annotations from Gene Ontology, the Enzyme Commission and UniPathways. Annocript also gives information about the longest ORF and the non-coding potential using external software. Annocript is also capable to identify putative long non-coding RNAs by using an heuristic based on homology and sequence features. + +https://github.com/frankMusacchia/Annocript # Available modules @@ -17,8 +21,15 @@ To start using Annocript, load one of these modules using a `module load` comman module load Annocript/2.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Annocript/2.0-foss-2022a|x|x|x|x|x|x| + + +### Annocript/2.0-foss-2022a + +This is a list of extensions included in the module: + +CGI-4.43 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ArchR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ArchR.md index 161ecac5a563..3fa61b1dc8b0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ArchR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ArchR.md @@ -6,6 +6,10 @@ hide: ArchR ===== + +ArchR is a full-featured R package for processing and analyzing single-cell ATAC-seq data. + +https://www.archrproject.com # Available modules @@ -17,7 +21,7 @@ To start using ArchR, load one of these modules using a `module load` command li module load ArchR/1.0.2-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Archive-Zip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Archive-Zip.md index 42954f6a9806..6825321352dc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Archive-Zip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Archive-Zip.md @@ -6,6 +6,10 @@ hide: Archive-Zip =========== + +Provide an interface to ZIP archive files. + +https://metacpan.org/pod/Archive::Zip # Available modules @@ -17,7 +21,7 @@ To start using Archive-Zip, load one of these modules using a `module load` comm module load Archive-Zip/1.68-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Arlequin.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Arlequin.md index dee104fbed41..9068c4a62f86 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Arlequin.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Arlequin.md @@ -6,6 +6,10 @@ hide: Arlequin ======== + +Arlequin: An Integrated Software for Population Genetics Data Analysis + +http://cmpg.unibe.ch/software/arlequin35/Arlequin35.html # Available modules @@ -17,7 +21,7 @@ To start using Arlequin, load one of these modules using a `module load` command module load Arlequin/3.5.2.2-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Armadillo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Armadillo.md index affb53f81d52..a9d31e4cbec0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Armadillo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Armadillo.md @@ -6,6 +6,10 @@ hide: Armadillo ========= + +Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. + +https://arma.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using Armadillo, load one of these modules using a `module load` comman module load Armadillo/12.6.2-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Arrow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Arrow.md index 091c887ae078..c80519516e53 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Arrow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Arrow.md @@ -6,6 +6,10 @@ hide: Arrow ===== + +Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data. + +https://arrow.apache.org # Available modules @@ -17,7 +21,7 @@ To start using Arrow, load one of these modules using a `module load` command li module load Arrow/14.0.1-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ArviZ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ArviZ.md index 8f90cba5f86d..9a3d464d23dd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ArviZ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ArviZ.md @@ -6,6 +6,10 @@ hide: ArviZ ===== + +Exploratory analysis of Bayesian models with Python + +https://github.com/arviz-devs/arviz # Available modules @@ -17,7 +21,7 @@ To start using ArviZ, load one of these modules using a `module load` command li module load ArviZ/0.16.1-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -27,3 +31,16 @@ module load ArviZ/0.16.1-foss-2023a |ArviZ/0.11.1-intel-2020b|-|x|x|-|x|x| |ArviZ/0.7.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |ArviZ/0.7.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### ArviZ/0.16.1-foss-2023a + +This is a list of extensions included in the module: + +ArviZ-0.16.1, xarray-einstats-0.6.0 + +### ArviZ/0.12.1-foss-2021a + +This is a list of extensions included in the module: + +ArviZ-0.12.1, xarray-einstats-0.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Aspera-CLI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Aspera-CLI.md index fbc0a3fe7a1b..e71bb4ecb6c9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Aspera-CLI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Aspera-CLI.md @@ -6,6 +6,10 @@ hide: Aspera-CLI ========== + +IBM Aspera Command-Line Interface (the Aspera CLI) isa collection of Aspera tools for performing high-speed, secure datatransfers from the command line. The Aspera CLI is for users andorganizations who want to automate their transfer workflows. + +https://asperasoft.com # Available modules @@ -17,7 +21,7 @@ To start using Aspera-CLI, load one of these modules using a `module load` comma module load Aspera-CLI/3.9.6.1467.159c5b1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoDock-Vina.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoDock-Vina.md index 4e40220ac347..86cc22314159 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoDock-Vina.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoDock-Vina.md @@ -6,6 +6,10 @@ hide: AutoDock-Vina ============= + +AutoDock Vina is an open-source program for doing molecular docking. + +https://vina.scripps.edu/ # Available modules @@ -17,8 +21,15 @@ To start using AutoDock-Vina, load one of these modules using a `module load` co module load AutoDock-Vina/1.2.3-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |AutoDock-Vina/1.2.3-foss-2021b|x|x|x|-|x|x| + + +### AutoDock-Vina/1.2.3-foss-2021b + +This is a list of extensions included in the module: + +vina-1.2.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoGeneS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoGeneS.md index 2bc84895d29e..cf1d47eaaab8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoGeneS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoGeneS.md @@ -6,6 +6,10 @@ hide: AutoGeneS ========= + +AutoGeneS automatically extracts informative genes and reveals the cellular heterogeneityof bulk RNA samples. + +https://github.com/theislab/AutoGeneS # Available modules @@ -17,8 +21,15 @@ To start using AutoGeneS, load one of these modules using a `module load` comman module load AutoGeneS/1.0.4-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |AutoGeneS/1.0.4-foss-2020b|-|x|x|x|x|x| + + +### AutoGeneS/1.0.4-foss-2020b + +This is a list of extensions included in the module: + +anndata-0.7.6, autogenes-1.0.4, cachetools-4.2.2, natsort-7.1.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoMap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoMap.md index 4901346c94f1..fff30af95b47 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoMap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoMap.md @@ -6,6 +6,10 @@ hide: AutoMap ======= + +Tool to find regions of homozygosity (ROHs) from sequencing data. + +https://github.com/mquinodo/AutoMap # Available modules @@ -17,7 +21,7 @@ To start using AutoMap, load one of these modules using a `module load` command module load AutoMap/1.0-foss-2019b-20200324 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Autoconf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Autoconf.md index 0bb777fef62a..26544a2c2156 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Autoconf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Autoconf.md @@ -6,6 +6,10 @@ hide: Autoconf ======== + +Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. + +https://www.gnu.org/software/autoconf/ # Available modules @@ -17,7 +21,7 @@ To start using Autoconf, load one of these modules using a `module load` command module load Autoconf/2.71-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Automake.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Automake.md index a3d9b6ea20b1..4f6289666444 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Automake.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Automake.md @@ -6,6 +6,10 @@ hide: Automake ======== + +Automake: GNU Standards-compliant Makefile generator + +https://www.gnu.org/software/automake/automake.html # Available modules @@ -17,7 +21,7 @@ To start using Automake, load one of these modules using a `module load` command module load Automake/1.16.5-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Autotools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Autotools.md index c6936177afbe..492051804072 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Autotools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Autotools.md @@ -6,6 +6,10 @@ hide: Autotools ========= + +This bundle collect the standard GNU build tools: Autoconf, Automake and libtool + +http://autotools.io # Available modules @@ -17,7 +21,7 @@ To start using Autotools, load one of these modules using a `module load` comman module load Autotools/20220317-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Avogadro2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Avogadro2.md index 958f624f8e0d..6bb704118bff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Avogadro2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Avogadro2.md @@ -6,6 +6,10 @@ hide: Avogadro2 ========= + +Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. + +https://two.avogadro.cc/index.html # Available modules @@ -17,7 +21,7 @@ To start using Avogadro2, load one of these modules using a `module load` comman module load Avogadro2/1.97.0-linux-x86_64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BAMSurgeon.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BAMSurgeon.md index 6c3892975ef9..c756b92b1a98 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BAMSurgeon.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BAMSurgeon.md @@ -6,6 +6,10 @@ hide: BAMSurgeon ========== + +Tools for adding mutations to existing .bam files, used for testing mutation callers + +https://github.com/adamewing/bamsurgeon # Available modules @@ -17,7 +21,7 @@ To start using BAMSurgeon, load one of these modules using a `module load` comma module load BAMSurgeon/1.2-GCC-8.3.0-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BBMap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BBMap.md index c560c769ed08..16eb9916c211 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BBMap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BBMap.md @@ -6,6 +6,10 @@ hide: BBMap ===== + +BBMap short read aligner, and other bioinformatic tools. + +https://sourceforge.net/projects/bbmap/ # Available modules @@ -17,7 +21,7 @@ To start using BBMap, load one of these modules using a `module load` command li module load BBMap/39.01-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md index 7b5f7cc0b1a8..4b3bb53edf04 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md @@ -6,6 +6,10 @@ hide: BCFtools ======== + +Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants + +https://www.htslib.org/ # Available modules @@ -17,7 +21,7 @@ To start using BCFtools, load one of these modules using a `module load` command module load BCFtools/1.18-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BDBag.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BDBag.md index d085df6e6911..976acaa40e8d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BDBag.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BDBag.md @@ -6,6 +6,10 @@ hide: BDBag ===== + +The bdbag utilities are a collection of software programs forworking with BagIt packages that conform to the Bagit and Bagit/RO profiles. + +https://github.com/fair-research/bdbag # Available modules @@ -17,8 +21,15 @@ To start using BDBag, load one of these modules using a `module load` command li module load BDBag/1.6.3-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |BDBag/1.6.3-intel-2021b|x|x|x|-|x|x| + + +### BDBag/1.6.3-intel-2021b + +This is a list of extensions included in the module: + +bagit-1.8.1, bagit_profile-1.3.1, bdbag-1.6.3, setuptools_scm-5.0.2, tzlocal-2.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BEDOPS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BEDOPS.md index 0f53e125c954..2ef429e1faf7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BEDOPS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BEDOPS.md @@ -6,6 +6,10 @@ hide: BEDOPS ====== + +BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster. + +http://bedops.readthedocs.io/en/latest/index.html # Available modules @@ -17,7 +21,7 @@ To start using BEDOPS, load one of these modules using a `module load` command l module load BEDOPS/2.4.41-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BEDTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BEDTools.md index a209a1321cf0..09e656c39e1d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BEDTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BEDTools.md @@ -6,6 +6,10 @@ hide: BEDTools ======== + +BEDTools: a powerful toolset for genome arithmetic.The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps andcomputing coverage.The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. + +https://bedtools.readthedocs.io/ # Available modules @@ -17,7 +21,7 @@ To start using BEDTools, load one of these modules using a `module load` command module load BEDTools/2.31.0-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BLAST+.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BLAST+.md index a03ba002fb1a..e242eadaac46 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BLAST+.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BLAST+.md @@ -6,6 +6,10 @@ hide: BLAST+ ====== + +Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences. + +https://blast.ncbi.nlm.nih.gov/ # Available modules @@ -17,7 +21,7 @@ To start using BLAST+, load one of these modules using a `module load` command l module load BLAST+/2.14.1-gompi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BLAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BLAT.md index 1102afd6d524..3ce65f2945a7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BLAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BLAT.md @@ -6,6 +6,10 @@ hide: BLAT ==== + +BLAT on DNA is designed to quickly find sequences of 95% andgreater similarity of length 25 bases or more. + +https://genome.ucsc.edu/FAQ/FAQblat.html # Available modules @@ -17,7 +21,7 @@ To start using BLAT, load one of these modules using a `module load` command lik module load BLAT/3.7-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BLIS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BLIS.md index ac4d11c1e5a9..944cb9ccbe78 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BLIS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BLIS.md @@ -6,6 +6,10 @@ hide: BLIS ==== + +BLIS is a portable software framework for instantiating high-performanceBLAS-like dense linear algebra libraries. + +https://github.com/flame/blis/ # Available modules @@ -17,7 +21,7 @@ To start using BLIS, load one of these modules using a `module load` command lik module load BLIS/0.9.0-GCC-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BRAKER.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BRAKER.md index 0d3d3033808c..3bdd50538a3f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BRAKER.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BRAKER.md @@ -6,6 +6,10 @@ hide: BRAKER ====== + +BRAKER is a pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes. + +https://github.com/Gaius-Augustus/BRAKER # Available modules @@ -17,7 +21,7 @@ To start using BRAKER, load one of these modules using a `module load` command l module load BRAKER/2.1.6-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BSMAPz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BSMAPz.md index aa93db2c01cb..618de8cb615a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BSMAPz.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BSMAPz.md @@ -6,6 +6,10 @@ hide: BSMAPz ====== + +Updated and optimized fork of BSMAP.BSMAPz is a short reads mapping program for bisulfite sequencing in DNA methylation study. + +https://github.com/zyndagj/BSMAPz # Available modules @@ -17,7 +21,7 @@ To start using BSMAPz, load one of these modules using a `module load` command l module load BSMAPz/1.1.1-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BSseeker2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BSseeker2.md index 4ad483e2fedc..332f87fa49fe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BSseeker2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BSseeker2.md @@ -6,6 +6,10 @@ hide: BSseeker2 ========= + +BS-Seeker2 is a seamless and versatile pipeline for accurately and fast mapping the bisulfite-treatedreads. + +http://pellegrini-legacy.mcdb.ucla.edu/bs_seeker2 # Available modules @@ -17,7 +21,7 @@ To start using BSseeker2, load one of these modules using a `module load` comman module load BSseeker2/2.1.8-iccifort-2019.5.281-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BUSCO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BUSCO.md index f453985d55ce..0a58ab9b412d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BUSCO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BUSCO.md @@ -6,6 +6,10 @@ hide: BUSCO ===== + +BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs + +https://busco.ezlab.org/ # Available modules @@ -17,7 +21,7 @@ To start using BUSCO, load one of these modules using a `module load` command li module load BUSCO/5.4.3-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BUStools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BUStools.md index d482eaaa9ef7..532cae22188a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BUStools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BUStools.md @@ -6,6 +6,10 @@ hide: BUStools ======== + +bustools is a program for manipulating BUS files for single cell RNA-Seq datasets. It can be used to error correct barcodes, collapse UMIs, produce gene count or transcript compatibility count matrices, and is useful for many other tasks. See the kallisto | bustools website for examples and instructions on how to use bustools as part of a single-cell RNA-seq workflow. + +https://github.com/BUStools/bustools # Available modules @@ -17,7 +21,7 @@ To start using BUStools, load one of these modules using a `module load` command module load BUStools/0.43.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md index 3d67fbb595a0..3dc38d3912f1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md @@ -6,6 +6,10 @@ hide: BWA === + +Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. + +http://bio-bwa.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using BWA, load one of these modules using a `module load` command like module load BWA/0.7.17-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BamTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BamTools.md index 9eea79b41d46..44bfb0e249e5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BamTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BamTools.md @@ -6,6 +6,10 @@ hide: BamTools ======== + +BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. + +https://github.com/pezmaster31/bamtools # Available modules @@ -17,7 +21,7 @@ To start using BamTools, load one of these modules using a `module load` command module load BamTools/2.5.2-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bambi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bambi.md index e2695bd59299..67081deca51b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bambi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bambi.md @@ -6,6 +6,10 @@ hide: Bambi ===== + +Bambi is a high-level Bayesian model-building interface written in Python.It works with the probabilistic programming frameworks PyMC3 and is designedto make it extremely easy to fit Bayesian mixed-effects models common in biology,social sciences and other disciplines. + +https://bambinos.github.io/bambi # Available modules @@ -17,8 +21,15 @@ To start using Bambi, load one of these modules using a `module load` command li module load Bambi/0.7.1-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Bambi/0.7.1-intel-2021b|x|x|x|-|x|x| + + +### Bambi/0.7.1-intel-2021b + +This is a list of extensions included in the module: + +bambi-0.7.1, formulae-0.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bandage.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bandage.md index f474bfbde2d0..b233d3af1159 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bandage.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bandage.md @@ -6,6 +6,10 @@ hide: Bandage ======= + +Bandage is a program for visualising de novo assembly graphs + +http://rrwick.github.io/Bandage/ # Available modules @@ -17,7 +21,7 @@ To start using Bandage, load one of these modules using a `module load` command module load Bandage/0.9.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BatMeth2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BatMeth2.md index e6b6f983a8cf..f45d4d270cd9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BatMeth2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BatMeth2.md @@ -6,6 +6,10 @@ hide: BatMeth2 ======== + +An Integrated Package for Bisulfite DNA Methylation Data Analysis with Indel-sensitive Mapping. + +https://github.com/GuoliangLi-HZAU/BatMeth2 # Available modules @@ -17,7 +21,7 @@ To start using BatMeth2, load one of these modules using a `module load` command module load BatMeth2/2.1-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScEnv.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScEnv.md index 4d26c2a6ddbf..ea54f588fbd8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScEnv.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScEnv.md @@ -6,6 +6,10 @@ hide: BayeScEnv ========= + +BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detectlocal adaptation. + +https://github.com/devillemereuil/bayescenv # Available modules @@ -17,7 +21,7 @@ To start using BayeScEnv, load one of these modules using a `module load` comman module load BayeScEnv/1.1-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScan.md index c023dec9ce65..82a64c3bb3d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScan.md @@ -6,6 +6,10 @@ hide: BayeScan ======== + +BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. + +http://cmpg.unibe.ch/software/BayeScan # Available modules @@ -17,7 +21,7 @@ To start using BayeScan, load one of these modules using a `module load` command module load BayeScan/2.1-intel-compilers-2021.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BayesAss3-SNPs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BayesAss3-SNPs.md index debadfd8af0e..a732cd74fbf8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BayesAss3-SNPs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BayesAss3-SNPs.md @@ -6,6 +6,10 @@ hide: BayesAss3-SNPs ============== + +Modification of BayesAss 3.0.4 to allow handling of large SNP datasets generated via methods such asRADseq protocols. + +https://github.com/stevemussmann/BayesAss3-SNPs # Available modules @@ -17,7 +21,7 @@ To start using BayesAss3-SNPs, load one of these modules using a `module load` c module load BayesAss3-SNPs/1.1-2022.02.19-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BayesPrism.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BayesPrism.md index 0506662e8cff..e30dec7ea175 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BayesPrism.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BayesPrism.md @@ -6,6 +6,10 @@ hide: BayesPrism ========== + +Bayesian cell Proportion Reconstruction Inferred using Statistical Marginalization (BayesPrism): A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression + +https://github.com/Danko-Lab/BayesPrism # Available modules @@ -17,7 +21,7 @@ To start using BayesPrism, load one of these modules using a `module load` comma module load BayesPrism/2.0-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bazel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bazel.md index 1c75ba40a30c..0ba616f0fb89 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bazel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bazel.md @@ -6,6 +6,10 @@ hide: Bazel ===== + +Bazel is a build tool that builds code quickly and reliably.It is used to build the majority of Google's software. + +https://bazel.io/ # Available modules @@ -17,7 +21,7 @@ To start using Bazel, load one of these modules using a `module load` command li module load Bazel/6.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Beast.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Beast.md index c99f2e7d8230..d8f9f4b6c078 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Beast.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Beast.md @@ -6,6 +6,10 @@ hide: Beast ===== + +BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. + +http://beast2.org # Available modules @@ -17,7 +21,7 @@ To start using Beast, load one of these modules using a `module load` command li module load Beast/2.7.3-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BeautifulSoup.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BeautifulSoup.md index 5d6c8f4ccea2..74c9c8b72bc4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BeautifulSoup.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BeautifulSoup.md @@ -6,6 +6,10 @@ hide: BeautifulSoup ============= + +Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping. + +https://www.crummy.com/software/BeautifulSoup # Available modules @@ -17,7 +21,7 @@ To start using BeautifulSoup, load one of these modules using a `module load` co module load BeautifulSoup/4.12.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,34 @@ module load BeautifulSoup/4.12.2-GCCcore-12.3.0 |BeautifulSoup/4.10.0-GCCcore-11.3.0|x|x|x|x|x|x| |BeautifulSoup/4.10.0-GCCcore-11.2.0|x|x|x|-|x|x| |BeautifulSoup/4.10.0-GCCcore-10.3.0|x|x|x|x|x|x| + + +### BeautifulSoup/4.12.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +BeautifulSoup-4.12.2, soupsieve-2.4.1 + +### BeautifulSoup/4.11.1-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +BeautifulSoup-4.11.1, hatchling-1.12.2, soupsieve-2.3.2.post1 + +### BeautifulSoup/4.10.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +BeautifulSoup-4.10.0, soupsieve-2.3.1 + +### BeautifulSoup/4.10.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +BeautifulSoup-4.10.0, soupsieve-2.3.1 + +### BeautifulSoup/4.10.0-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +BeautifulSoup-4.10.0, soupsieve-2.3.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BerkeleyGW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BerkeleyGW.md index 46ec9a015416..8723272c2a9e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BerkeleyGW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BerkeleyGW.md @@ -6,6 +6,10 @@ hide: BerkeleyGW ========== + +The BerkeleyGW Package is a set of computer codes that calculates the quasiparticle properties and the optical responses of a large variety of materials from bulk periodic crystals to nanostructures such as slabs, wires and molecules. + +https://www.berkeleygw.org # Available modules @@ -17,7 +21,7 @@ To start using BerkeleyGW, load one of these modules using a `module load` comma module load BerkeleyGW/2.1.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BiG-SCAPE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BiG-SCAPE.md index 7c0515620838..713a9cc427b6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BiG-SCAPE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BiG-SCAPE.md @@ -6,6 +6,10 @@ hide: BiG-SCAPE ========= + +BiG-SCAPE and CORASON provide a set of tools to explore the diversity of biosynthetic gene clusters (BGCs) across large numbers of genomes, by constructing BGC sequence similarity networks, grouping BGCs into gene cluster families, and exploring gene cluster diversity linked to enzyme phylogenies. + +https://bigscape-corason.secondarymetabolites.org/index.html # Available modules @@ -17,7 +21,7 @@ To start using BiG-SCAPE, load one of these modules using a `module load` comman module load BiG-SCAPE/1.0.1-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BigDFT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BigDFT.md index 2da95c125b81..72404f9bb9eb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BigDFT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BigDFT.md @@ -6,6 +6,10 @@ hide: BigDFT ====== + +BigDFT: electronic structure calculation based on Daubechies wavelets.bigdft-suite is a set of different packages to run bigdft. + +https://gitlab.com/l_sim/bigdft-suite # Available modules @@ -17,7 +21,7 @@ To start using BigDFT, load one of these modules using a `module load` command l module load BigDFT/1.9.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BinSanity.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BinSanity.md index 5f45341b452d..3be1b199e0d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BinSanity.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BinSanity.md @@ -6,6 +6,10 @@ hide: BinSanity ========= + +BinSanity contains a suite a scripts designed to cluster contigs generated frommetagenomic assembly into putative genomes. + +https://github.com/edgraham/BinSanity/wiki # Available modules @@ -17,7 +21,7 @@ To start using BinSanity, load one of these modules using a `module load` comman module load BinSanity/0.3.5-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-DB-HTS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-DB-HTS.md index ba9029340a15..b6649e5f4a6e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-DB-HTS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-DB-HTS.md @@ -6,6 +6,10 @@ hide: Bio-DB-HTS ========== + +Read files using HTSlib including BAM/CRAM, Tabix and BCF database files + +https://metacpan.org/release/Bio-DB-HTS # Available modules @@ -17,7 +21,7 @@ To start using Bio-DB-HTS, load one of these modules using a `module load` comma module load Bio-DB-HTS/3.01-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-EUtilities.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-EUtilities.md index c73bd2169176..b0232b6a68bb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-EUtilities.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-EUtilities.md @@ -6,6 +6,10 @@ hide: Bio-EUtilities ============== + +BioPerl low-level API for retrieving and storing data from NCBI eUtils + +https://github.com/bioperl/bio-eutilities # Available modules @@ -17,8 +21,15 @@ To start using Bio-EUtilities, load one of these modules using a `module load` c module load Bio-EUtilities/1.76-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Bio-EUtilities/1.76-GCCcore-8.3.0|-|x|x|-|x|x| + + +### Bio-EUtilities/1.76-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +base-2.23, Bio::ASN1::EntrezGene-1.73, Bio::DB::EUtilities-1.76, Text::Wrap-2013.0523 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-SearchIO-hmmer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-SearchIO-hmmer.md index be7e040bcc24..5140c8b67a65 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-SearchIO-hmmer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-SearchIO-hmmer.md @@ -6,6 +6,10 @@ hide: Bio-SearchIO-hmmer ================== + +Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatiblewith both version 2 and version 3 of the HMMER package from http://hmmer.org. + +https://metacpan.org/pod/Bio::SearchIO::hmmer3 # Available modules @@ -17,7 +21,7 @@ To start using Bio-SearchIO-hmmer, load one of these modules using a `module loa module load Bio-SearchIO-hmmer/1.7.3-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BioPerl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BioPerl.md index f16a76824fd7..37161a75aa93 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BioPerl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BioPerl.md @@ -6,6 +6,10 @@ hide: BioPerl ======= + +Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. + +https://bioperl.org/ # Available modules @@ -17,7 +21,7 @@ To start using BioPerl, load one of these modules using a `module load` command module load BioPerl/1.7.8-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,28 @@ module load BioPerl/1.7.8-GCCcore-11.3.0 |BioPerl/1.7.8-GCCcore-10.2.0|-|x|x|x|x|x| |BioPerl/1.7.7-GCCcore-9.3.0|-|x|x|-|x|x| |BioPerl/1.7.2-GCCcore-8.3.0|-|x|x|-|x|x| + + +### BioPerl/1.7.8-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +Bio::DB::SeqFeature-1.7.4, Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::DOM::XPath-0.14, XML::Writer-0.900 + +### BioPerl/1.7.8-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::DOM::XPath-0.14, XML::Writer-0.900 + +### BioPerl/1.7.8-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::DOM::XPath-0.14, XML::Writer-0.900 + +### BioPerl/1.7.7-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +Bio::Procedural-1.7.4, BioPerl-1.7.7, XML::DOM::XPath-0.14, XML::Writer-0.625 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md index f459bcfb6fc2..5d08046f3f49 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md @@ -6,6 +6,10 @@ hide: Biopython ========= + +Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. + +https://www.biopython.org # Available modules @@ -17,7 +21,7 @@ To start using Biopython, load one of these modules using a `module load` comman module load Biopython/1.83-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bismark.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bismark.md index ef7264dc8cae..01e3628c891f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bismark.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bismark.md @@ -6,6 +6,10 @@ hide: Bismark ======= + +A tool to map bisulfite converted sequence reads and determine cytosine methylation states + +https://www.bioinformatics.babraham.ac.uk/projects/bismark/ # Available modules @@ -17,7 +21,7 @@ To start using Bismark, load one of these modules using a `module load` command module load Bismark/0.23.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bison.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bison.md index da1be63c3230..4629bf90b784 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bison.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bison.md @@ -6,6 +6,10 @@ hide: Bison ===== + +Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. + +http://www.gnu.org/software/bison # Available modules @@ -17,7 +21,7 @@ To start using Bison, load one of these modules using a `module load` command li module load Bison/3.8.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Blender.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Blender.md index 4cbd02f14bbd..f0923c9cdb14 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Blender.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Blender.md @@ -6,6 +6,10 @@ hide: Blender ======= + +Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. + +https://www.blender.org/ # Available modules @@ -17,7 +21,7 @@ To start using Blender, load one of these modules using a `module load` command module load Blender/3.5.0-linux-x86_64-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Block.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Block.md index 8f9120cb3bde..a387d843c340 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Block.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Block.md @@ -6,6 +6,10 @@ hide: Block ===== + +Block implements the density matrix renormalization group (DMRG) algorithm forquantum chemistry. + +https://sanshar.github.io/Block/ # Available modules @@ -17,7 +21,7 @@ To start using Block, load one of these modules using a `module load` command li module load Block/1.5.3-20200525-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc.md index 8570f874a0d5..b0dc7d9017ab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc.md @@ -6,6 +6,10 @@ hide: Blosc ===== + +Blosc, an extremely fast, multi-threaded, meta-compressor library + +https://www.blosc.org/ # Available modules @@ -17,7 +21,7 @@ To start using Blosc, load one of these modules using a `module load` command li module load Blosc/1.21.3-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc2.md index 54b77e1dbd98..434ef7d36a57 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc2.md @@ -6,6 +6,10 @@ hide: Blosc2 ====== + +Blosc, an extremely fast, multi-threaded, meta-compressor library + +https://www.blosc.org/ # Available modules @@ -17,7 +21,7 @@ To start using Blosc2, load one of these modules using a `module load` command l module load Blosc2/2.6.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bonito.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bonito.md index 61c183dabe79..8fbaace54ec6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bonito.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bonito.md @@ -6,6 +6,10 @@ hide: Bonito ====== + +Convolution Basecaller for Oxford Nanopore Reads + +https://github.com/nanoporetech/bonito # Available modules @@ -17,10 +21,29 @@ To start using Bonito, load one of these modules using a `module load` command l module load Bonito/0.4.0-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Bonito/0.4.0-fosscuda-2020b|-|-|-|-|x|-| |Bonito/0.3.8-fosscuda-2020b|-|-|-|-|x|-| |Bonito/0.1.0-foss-2019b-Python-3.7.4|-|x|-|-|-|x| + + +### Bonito/0.4.0-fosscuda-2020b + +This is a list of extensions included in the module: + +alembic-1.6.4, cliff-3.7.0, cmaes-0.8.2, cmd2-1.5.0, colorama-0.4.4, colorlog-5.0.1, crf-beam-0.0.1a0, fast-ctc-decode-0.3.0, greenlet-1.1.0, importlib_metadata-4.0.1, mappy-2.18, networkx-2.5.1, ont-bonito-0.4.0, optuna-2.7.0, prettytable-2.1.0, pyperclip-1.8.2, python-editor-1.0.4, seqdist-0.0.3, SQLAlchemy-1.4.15, stevedore-3.3.0 + +### Bonito/0.3.8-fosscuda-2020b + +This is a list of extensions included in the module: + +alembic-1.5.8, cliff-3.7.0, cmaes-0.8.2, cmd2-1.5.0, colorama-0.4.4, colorlog-5.0.1, crf-beam-0.0.1a0, fast-ctc-decode-0.3.0, greenlet-1.0.0, importlib_metadata-4.0.1, mappy-2.18, ont-bonito-0.3.8, ont-fast5-api-3.3.0, optuna-2.7.0, prettytable-2.1.0, progressbar33-2.4, pyperclip-1.8.2, python-editor-1.0.4, seqdist-0.0.3, SQLAlchemy-1.4.11, stevedore-3.3.0 + +### Bonito/0.1.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +alembic-1.4.2, cliff-3.1.0, cmd2-1.0.1, colorama-0.4.3, colorlog-4.1.0, fast-ctc-decode-0.2.3, ont-bonito-0.1.0, ont-fast5-api-3.0.1, optuna-1.1.0, parasail-1.2, prettytable-0.7.2, progressbar33-2.4, pyperclip-1.7.0, python-editor-1.0.4, SQLAlchemy-1.3.15, stevedore-1.32.0, toml-0.10.0, tqdm-4.31.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bonnie++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bonnie++.md index 724c13673544..3469443d9932 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bonnie++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bonnie++.md @@ -6,6 +6,10 @@ hide: Bonnie++ ======== + +Bonnie++-1.97: Enhanced performance Test of Filesystem I/O + +https://www.coker.com.au/bonnie++ # Available modules @@ -17,7 +21,7 @@ To start using Bonnie++, load one of these modules using a `module load` command module load Bonnie++/2.00a-GCC-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.MPI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.MPI.md index 9d145b5bc2b0..6d95d7f00ed5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.MPI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.MPI.md @@ -6,6 +6,10 @@ hide: Boost.MPI ========= + +Boost provides free peer-reviewed portable C++ source libraries. + +https://www.boost.org/ # Available modules @@ -17,7 +21,7 @@ To start using Boost.MPI, load one of these modules using a `module load` comman module load Boost.MPI/1.81.0-gompi-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python-NumPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python-NumPy.md index e9e93ca4a1cc..9f5f5f8648a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python-NumPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python-NumPy.md @@ -6,6 +6,10 @@ hide: Boost.Python-NumPy ================== + +Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language. + +https://boostorg.github.io/python # Available modules @@ -17,7 +21,7 @@ To start using Boost.Python-NumPy, load one of these modules using a `module loa module load Boost.Python-NumPy/1.79.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python.md index 5b4015011447..293fb5a4ab95 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python.md @@ -6,6 +6,10 @@ hide: Boost.Python ============ + +Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language. + +https://boostorg.github.io/python # Available modules @@ -17,7 +21,7 @@ To start using Boost.Python, load one of these modules using a `module load` com module load Boost.Python/1.79.0-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.md index b075711cdf99..51bc9c1feb42 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.md @@ -6,6 +6,10 @@ hide: Boost ===== + +Boost provides free peer-reviewed portable C++ source libraries. + +https://www.boost.org/ # Available modules @@ -17,7 +21,7 @@ To start using Boost, load one of these modules using a `module load` command li module load Boost/1.82.0-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bottleneck.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bottleneck.md index 6c29706cab91..81b5de4d19f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bottleneck.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bottleneck.md @@ -6,6 +6,10 @@ hide: Bottleneck ========== + +Fast NumPy array functions written in C + +https://kwgoodman.github.io/bottleneck-doc # Available modules @@ -17,7 +21,7 @@ To start using Bottleneck, load one of these modules using a `module load` comma module load Bottleneck/1.3.2-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie.md index 67e476a708fc..c554346fd2c8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie.md @@ -6,6 +6,10 @@ hide: Bowtie ====== + +Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome. + +http://bowtie-bio.sourceforge.net/index.shtml # Available modules @@ -17,7 +21,7 @@ To start using Bowtie, load one of these modules using a `module load` command l module load Bowtie/1.3.1-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie2.md index d3a8020acb2d..54e281827b72 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie2.md @@ -6,6 +6,10 @@ hide: Bowtie2 ======= + +Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. + +http://bowtie-bio.sourceforge.net/bowtie2/index.shtml # Available modules @@ -17,7 +21,7 @@ To start using Bowtie2, load one of these modules using a `module load` command module load Bowtie2/2.4.5-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bracken.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bracken.md index d0ca0c76e672..333c4e548fb4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bracken.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bracken.md @@ -6,6 +6,10 @@ hide: Bracken ======= + +Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. Braken uses the taxonomy labels assigned by Kraken, a highly accurate metagenomics classification algorithm, to estimate the number of reads originating from each species present in a sample. Kraken classifies reads to the best matching location in the taxonomic tree, but does not estimate abundances of species. We use the Kraken database itself to derive probabilities that describe how much sequence from each genome is identical to other genomes in the database, and combine this information with the assignments for a particular sample to estimate abundance at the species level, the genus level, or above. Combined with the Kraken classifier, Bracken produces accurate species- and genus-level abundance estimates even when a sample contains two or more near-identical species.NOTE: Bracken is compatible with both Kraken 1 and Kraken 2. However, the default kmer length is different depending on the version of Kraken used. If you use Kraken 1 defaults, specify 31 as the kmer length. If you use Kraken 2 defaults, specify 35 as the kmer length. + +https://ccb.jhu.edu/software/bracken/ # Available modules @@ -17,7 +21,7 @@ To start using Bracken, load one of these modules using a `module load` command module load Bracken/2.9-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli-python.md index fae81e0fe474..43e44733785a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli-python.md @@ -6,6 +6,10 @@ hide: Brotli-python ============= + +Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression.The specification of the Brotli Compressed Data Format is defined in RFC 7932. + +https://github.com/google/brotli # Available modules @@ -17,7 +21,7 @@ To start using Brotli-python, load one of these modules using a `module load` co module load Brotli-python/1.0.9-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli.md index a9a2a072401f..4e37619a58cd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli.md @@ -6,6 +6,10 @@ hide: Brotli ====== + +Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression.The specification of the Brotli Compressed Data Format is defined in RFC 7932. + +https://github.com/google/brotli # Available modules @@ -17,7 +21,7 @@ To start using Brotli, load one of these modules using a `module load` command l module load Brotli/1.1.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Brunsli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Brunsli.md index 329bc4f3460e..f3ff4f7553d2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Brunsli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Brunsli.md @@ -6,6 +6,10 @@ hide: Brunsli ======= + +Brunsli is a lossless JPEG repacking library. + +https://github.com/google/brunsli/ # Available modules @@ -17,7 +21,7 @@ To start using Brunsli, load one of these modules using a `module load` command module load Brunsli/0.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CASPR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CASPR.md index 8ec136b2288a..af53fa02ed28 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CASPR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CASPR.md @@ -6,6 +6,10 @@ hide: CASPR ===== + +Running CASPR is extremely easy and convenient to analyze CRIPR-Cas9 screens using pgRNAs. + +https://judithbergada.github.io/CASPR # Available modules @@ -17,7 +21,7 @@ To start using CASPR, load one of these modules using a `module load` command li module load CASPR/20200730-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CCL.md index eff6a21b15e9..51010a4b57f5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CCL.md @@ -6,6 +6,10 @@ hide: CCL === + +Clozure CL (often called CCL for short) is a free Common Lisp implementation with a long history. Some distinguishing features of the implementation include fast compilation speed, native threads, a precise, generational, compacting garbage collector, and a convenient foreign-function interface. + +https://ccl.clozure.com/ # Available modules @@ -17,7 +21,7 @@ To start using CCL, load one of these modules using a `module load` command like module load CCL/1.12.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CD-HIT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CD-HIT.md index f2e1fdb25c05..71c653f72411 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CD-HIT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CD-HIT.md @@ -6,6 +6,10 @@ hide: CD-HIT ====== + +CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences. + +https://github.com/weizhongli/cdhit # Available modules @@ -17,7 +21,7 @@ To start using CD-HIT, load one of these modules using a `module load` command l module load CD-HIT/4.8.1-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CDAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CDAT.md index 12a0c63d5ae4..b9994723ee79 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CDAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CDAT.md @@ -6,6 +6,10 @@ hide: CDAT ==== + +CDAT is a powerful and complete front-end to a rich set of visual-data exploration and analysis capabilities well suited for data analysis problems. + +https://github.com/CDAT/cdat # Available modules @@ -17,8 +21,15 @@ To start using CDAT, load one of these modules using a `module load` command lik module load CDAT/8.2.1-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CDAT/8.2.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### CDAT/8.2.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +cdat_info-8.2.1, cdms2-3.1.5, cdtime-3.1.4, cdutil-8.2.1, distarray-2.12.2, dv3d-8.2.1, eofs-1.4.0, genutil-8.2.1, lazy-object-proxy-1.5.2, pycf-1.6.9, thermo-8.1, unidata-2.8, vcs-8.2.1, vcsaddons-8.2.1, wk-8.2.1, xmgrace-2.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CDBtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CDBtools.md index 1c792570694c..8a9a3abe27f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CDBtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CDBtools.md @@ -6,6 +6,10 @@ hide: CDBtools ======== + +CDB (Constant DataBase) indexing and retrieval tools for FASTA files + +http://compbio.dfci.harvard.edu/tgi # Available modules @@ -17,7 +21,7 @@ To start using CDBtools, load one of these modules using a `module load` command module load CDBtools/0.99-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CDO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CDO.md index 86a6763155c7..acdaee580afc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CDO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CDO.md @@ -6,6 +6,10 @@ hide: CDO === + +CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data. + +https://code.zmaw.de/projects/cdo # Available modules @@ -17,7 +21,7 @@ To start using CDO, load one of these modules using a `module load` command like module load CDO/2.0.5-gompi-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CENSO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CENSO.md index 449691eeb546..9dfbf3e5e245 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CENSO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CENSO.md @@ -6,6 +6,10 @@ hide: CENSO ===== + +Commandline Energetic SOrting (CENSO) is a sorting algorithm for efficient evaluation of Structure Ensembles (SE). The input ensemble (or single structure) originating from a CREST[SQM/FF] run can be ranked by free energy at DFT level and/or geometries can be optimized using DFT. + +https://xtb-docs.readthedocs.io/en/latest/CENSO_docs/censo.html # Available modules @@ -17,8 +21,15 @@ To start using CENSO, load one of these modules using a `module load` command li module load CENSO/1.2.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CENSO/1.2.0-GCCcore-12.3.0|x|x|x|x|x|x| + + +### CENSO/1.2.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +CENSO-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CESM-deps.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CESM-deps.md index 431da89a6234..069b9e3926f3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CESM-deps.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CESM-deps.md @@ -6,6 +6,10 @@ hide: CESM-deps ========= + +CESM is a fully-coupled, community, global climate model thatprovides state-of-the-art computer simulations of the Earth's past, present,and future climate states. + +https://www.cesm.ucar.edu/models/cesm2/ # Available modules @@ -17,7 +21,7 @@ To start using CESM-deps, load one of these modules using a `module load` comman module load CESM-deps/2-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CFDEMcoupling.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CFDEMcoupling.md index 3543d4d4aea1..946e9ea54247 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CFDEMcoupling.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CFDEMcoupling.md @@ -6,6 +6,10 @@ hide: CFDEMcoupling ============= + +CFDEMcoupling is an open source CFD-DEM engine. It provides the possibility to couple the DEM engine LIGGGHTS to a CFD framework. + +https://www.cfdem.com/cfdemrcoupling-open-source-cfd-dem-framework # Available modules @@ -17,7 +21,7 @@ To start using CFDEMcoupling, load one of these modules using a `module load` co module load CFDEMcoupling/3.8.0-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CFITSIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CFITSIO.md index 97da232cbc4f..51719f95b2f4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CFITSIO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CFITSIO.md @@ -6,6 +6,10 @@ hide: CFITSIO ======= + +CFITSIO is a library of C and Fortran subroutines for reading and writing data files inFITS (Flexible Image Transport System) data format. + +https://heasarc.gsfc.nasa.gov/fitsio/ # Available modules @@ -17,7 +21,7 @@ To start using CFITSIO, load one of these modules using a `module load` command module load CFITSIO/4.3.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CGAL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CGAL.md index 1f9ab1eeb885..c1faeff96ed9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CGAL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CGAL.md @@ -6,6 +6,10 @@ hide: CGAL ==== + +The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library. + +https://www.cgal.org/ # Available modules @@ -17,7 +21,7 @@ To start using CGAL, load one of these modules using a `module load` command lik module load CGAL/5.6-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CGmapTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CGmapTools.md index 1d4f5d8af6aa..e0d04df4a4ff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CGmapTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CGmapTools.md @@ -6,6 +6,10 @@ hide: CGmapTools ========== + +Command-line Toolset for Bisulfite Sequencing Data Analysis + +https://cgmaptools.github.io/ # Available modules @@ -17,7 +21,7 @@ To start using CGmapTools, load one of these modules using a `module load` comma module load CGmapTools/0.1.2-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRCexplorer2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRCexplorer2.md index 6db7d27d2bc0..f43ffe9a2411 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRCexplorer2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRCexplorer2.md @@ -6,6 +6,10 @@ hide: CIRCexplorer2 ============= + +CIRCexplorer2 is a comprehensive and integrative circular RNA analysis toolset. + +http://circexplorer2.readthedocs.io/ # Available modules @@ -17,7 +21,7 @@ To start using CIRCexplorer2, load one of these modules using a `module load` co module load CIRCexplorer2/2.3.8-foss-2021b-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRI-long.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRI-long.md index c023d5d1f88a..5af73bb0d248 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRI-long.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRI-long.md @@ -6,6 +6,10 @@ hide: CIRI-long ========= + +Circular RNA Identification for Long-Reads Nanopore Sequencing Data + +https://github.com/bioinfo-biols/CIRI-long/ # Available modules @@ -17,8 +21,15 @@ To start using CIRI-long, load one of these modules using a `module load` comman module load CIRI-long/1.0.2-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CIRI-long/1.0.2-foss-2020b|-|x|x|x|x|x| + + +### CIRI-long/1.0.2-foss-2020b + +This is a list of extensions included in the module: + +bwapy-0.1.4, CIRI-long-1.0.2, mappy-2.17 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRIquant.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRIquant.md index e3a5c6296f2e..1512b6ec91b8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRIquant.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRIquant.md @@ -6,6 +6,10 @@ hide: CIRIquant ========= + +CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data + +https://github.com/bioinfo-biols/CIRIquant # Available modules @@ -17,8 +21,15 @@ To start using CIRIquant, load one of these modules using a `module load` comman module load CIRIquant/1.1.2-20221201-foss-2021b-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CIRIquant/1.1.2-20221201-foss-2021b-Python-2.7.18|x|x|x|x|x|x| + + +### CIRIquant/1.1.2-20221201-foss-2021b-Python-2.7.18 + +This is a list of extensions included in the module: + +argparse-1.4.0, CIRIquant-1.1.2-20221201 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CITE-seq-Count.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CITE-seq-Count.md index c824e2089994..14eda7f573ae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CITE-seq-Count.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CITE-seq-Count.md @@ -6,6 +6,10 @@ hide: CITE-seq-Count ============== + +A python package that allows to count antibody TAGS from a CITE-seq and/or cell hashing experiment. + +https://github.com/Hoohm/CITE-seq-Count # Available modules @@ -17,8 +21,15 @@ To start using CITE-seq-Count, load one of these modules using a `module load` c module load CITE-seq-Count/1.4.3-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CITE-seq-Count/1.4.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### CITE-seq-Count/1.4.3-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +CITE-seq-Count-1.4.3, dill-0.3.1.1, multiprocess-0.70.9, pybktree-1.1, pytest-dependency-0.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CLEAR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CLEAR.md index afd203a16074..60511ee99fbc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CLEAR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CLEAR.md @@ -6,6 +6,10 @@ hide: CLEAR ===== + +Direct comparison of circular and linear RNA expression + +https://github.com/YangLab/CLEAR # Available modules @@ -17,7 +21,7 @@ To start using CLEAR, load one of these modules using a `module load` command li module load CLEAR/20210117-foss-2021b-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CLHEP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CLHEP.md index 9d059efda74c..0d1b1e904411 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CLHEP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CLHEP.md @@ -6,6 +6,10 @@ hide: CLHEP ===== + +The CLHEP project is intended to be a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra. CLHEP is structured in a set of packages independent of any external package. + +https://proj-clhep.web.cern.ch/proj-clhep/ # Available modules @@ -17,7 +21,7 @@ To start using CLHEP, load one of these modules using a `module load` command li module load CLHEP/2.4.6.4-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CMAverse.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CMAverse.md index 8fd841d9ebd2..5f7edc70f179 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CMAverse.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CMAverse.md @@ -6,6 +6,10 @@ hide: CMAverse ======== + +The R package CMAverse provides a suite of functions for reproducible causal mediation analysisincluding cmdag for DAG visualization, cmest for statistical modeling and cmsens for sensitivity analysis. + +https://bs1125.github.io/CMAverse/ # Available modules @@ -17,7 +21,7 @@ To start using CMAverse, load one of these modules using a `module load` command module load CMAverse/20220112-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CMSeq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CMSeq.md index 39b4bf467061..fd3b32249dec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CMSeq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CMSeq.md @@ -6,6 +6,10 @@ hide: CMSeq ===== + +CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus. + +https://github.com/SegataLab/cmseq/ # Available modules @@ -17,7 +21,7 @@ To start using CMSeq, load one of these modules using a `module load` command li module load CMSeq/1.0.4-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CMake.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CMake.md index bfb80378b2ec..3296b1c07731 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CMake.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CMake.md @@ -6,6 +6,10 @@ hide: CMake ===== + +CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. + +https://www.cmake.org # Available modules @@ -17,7 +21,7 @@ To start using CMake, load one of these modules using a `module load` command li module load CMake/3.27.6-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/COLMAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/COLMAP.md index 2b39e1d64f39..3bea3c28fc02 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/COLMAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/COLMAP.md @@ -6,6 +6,10 @@ hide: COLMAP ====== + +COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipelinewith a graphical and command-line interface + +https://colmap.github.io # Available modules @@ -17,7 +21,7 @@ To start using COLMAP, load one of these modules using a `module load` command l module load COLMAP/3.8-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CONCOCT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CONCOCT.md index dc635b61585f..1693912d4e90 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CONCOCT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CONCOCT.md @@ -6,6 +6,10 @@ hide: CONCOCT ======= + +Clustering cONtigs with COverage and ComposiTion (CONCOCT) is aprogram for unsupervised binning of metagenomic contigs by using nucleotidecomposition, coverage data in multiple samples and linkage data from paired endreads. + +https://concoct.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using CONCOCT, load one of these modules using a `module load` command module load CONCOCT/1.1.0-foss-2020b-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CP2K.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CP2K.md index ad022936be9a..77397ed5c657 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CP2K.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CP2K.md @@ -6,6 +6,10 @@ hide: CP2K ==== + +CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. + +https://www.cp2k.org/ # Available modules @@ -17,7 +21,7 @@ To start using CP2K, load one of these modules using a `module load` command lik module load CP2K/2023.1-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CPC2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CPC2.md index 5e607ccb380f..f1b988b7cfda 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CPC2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CPC2.md @@ -6,6 +6,10 @@ hide: CPC2 ==== + +a fast and accurate coding potential calculator based on sequence intrinsic features + +http://cpc2.gao-lab.org/ # Available modules @@ -17,7 +21,7 @@ To start using CPC2, load one of these modules using a `module load` command lik module load CPC2/1.0.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CPLEX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CPLEX.md index 2107ea8e7f71..cf115e79f32d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CPLEX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CPLEX.md @@ -6,6 +6,10 @@ hide: CPLEX ===== + +IBM ILOG CPLEX Optimizer's mathematical programming technology enables analytical decision support for improving efficiency, reducing costs, and increasing profitability. + +https://www.ibm.com/analytics/cplex-optimizer # Available modules @@ -17,7 +21,7 @@ To start using CPLEX, load one of these modules using a `module load` command li module load CPLEX/12.10-GCCcore-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CPPE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CPPE.md index 25c3e15bd9e4..887963e69166 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CPPE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CPPE.md @@ -6,6 +6,10 @@ hide: CPPE ==== + +CPPE is an open-source, light-weight C++ and Python library for PolarizableEmbedding (PE)1,2 calculations. It provides an easy-to-use API to implement PEfor ground-state self-consistent field (SCF) calculations and post-SCF methods.A convenient Python interface is also available. + +https://github.com/maxscheurer/cppe # Available modules @@ -17,9 +21,22 @@ To start using CPPE, load one of these modules using a `module load` command lik module load CPPE/0.3.1-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CPPE/0.3.1-GCC-12.2.0|x|x|x|x|x|x| |CPPE/0.3.1-GCC-11.3.0|-|x|x|x|x|x| + + +### CPPE/0.3.1-GCC-12.2.0 + +This is a list of extensions included in the module: + +cppe-0.3.1 + +### CPPE/0.3.1-GCC-11.3.0 + +This is a list of extensions included in the module: + +cppe-0.3.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CREST.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CREST.md index 484441291c58..6e73aff18453 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CREST.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CREST.md @@ -6,6 +6,10 @@ hide: CREST ===== + +CREST is an utility/driver program for the xtb program. Originally it was designed as conformer sampling program, hence the abbreviation Conformer–Rotamer Ensemble Sampling Tool, but now offers also some utility functions for calculations with the GFNn–xTB methods. Generally the program functions as an IO based OMP scheduler (i.e., calculations are performed by the xtb program) and tool for the creation and analysation of structure ensembles. + +https://xtb-docs.readthedocs.io/en/latest/crest.html # Available modules @@ -17,7 +21,7 @@ To start using CREST, load one of these modules using a `module load` command li module load CREST/2.12-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPR-DAV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPR-DAV.md index 6a9c6b2807ac..1e2261eed856 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPR-DAV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPR-DAV.md @@ -6,6 +6,10 @@ hide: CRISPR-DAV ========== + +CRISPR-DAV is a pipeline to analyzeamplicon-based NGS data of CRISPR clones in a high throughput manner. + +https://github.com/pinetree1/crispr-dav/ # Available modules @@ -17,7 +21,7 @@ To start using CRISPR-DAV, load one of these modules using a `module load` comma module load CRISPR-DAV/2.3.4-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPResso2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPResso2.md index d4295d56088a..a5bb47faebb8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPResso2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPResso2.md @@ -6,6 +6,10 @@ hide: CRISPResso2 =========== + +CRISPResso2 is a software pipeline designed to enable rapid andintuitive interpretation of genome editing experiments. + +https://github.com/pinellolab/CRISPResso2/ # Available modules @@ -17,7 +21,7 @@ To start using CRISPResso2, load one of these modules using a `module load` comm module load CRISPResso2/2.2.1-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CRYSTAL17.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CRYSTAL17.md index 48aedd013941..3c77b7bd56a6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CRYSTAL17.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CRYSTAL17.md @@ -6,6 +6,10 @@ hide: CRYSTAL17 ========= + +The CRYSTAL package performs ab initio calculations of the ground state energy, energy gradient, electronic wave function and properties of periodic systems. + +http://www.crystal.unito.it # Available modules @@ -17,7 +21,7 @@ To start using CRYSTAL17, load one of these modules using a `module load` comman module load CRYSTAL17/1.0.2-intel-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CSBDeep.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CSBDeep.md index a5decaf14a94..062a8dd0c47a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CSBDeep.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CSBDeep.md @@ -6,6 +6,10 @@ hide: CSBDeep ======= + +CSBDeep is a toolbox for Content-aware Image Restoration (CARE). + +https://csbdeep.bioimagecomputing.com/ # Available modules @@ -17,9 +21,22 @@ To start using CSBDeep, load one of these modules using a `module load` command module load CSBDeep/0.7.4-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CSBDeep/0.7.4-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |CSBDeep/0.7.4-foss-2022a|x|x|x|x|x|x| + + +### CSBDeep/0.7.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +CSBDeep-0.7.4, tifffile-2023.9.26 + +### CSBDeep/0.7.4-foss-2022a + +This is a list of extensions included in the module: + +CSBDeep-0.7.4, tifffile-2023.9.26 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CUDA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CUDA.md index 32d7671f3992..cb50e6ba1d27 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CUDA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CUDA.md @@ -6,6 +6,10 @@ hide: CUDA ==== + +CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs. + +https://developer.nvidia.com/cuda-toolkit # Available modules @@ -17,7 +21,7 @@ To start using CUDA, load one of these modules using a `module load` command lik module load CUDA/12.1.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CUDAcore.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CUDAcore.md index 5d181586b8ae..eaa6d101fdc9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CUDAcore.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CUDAcore.md @@ -6,6 +6,10 @@ hide: CUDAcore ======== + +CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs. + +https://developer.nvidia.com/cuda-toolkit # Available modules @@ -17,7 +21,7 @@ To start using CUDAcore, load one of these modules using a `module load` command module load CUDAcore/11.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CUnit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CUnit.md index e8940ced77ec..941d831ec2ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CUnit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CUnit.md @@ -6,6 +6,10 @@ hide: CUnit ===== + +Automated testing framework for C. + +https://sourceforge.net/projects/cunit/ # Available modules @@ -17,7 +21,7 @@ To start using CUnit, load one of these modules using a `module load` command li module load CUnit/2.1-3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CVXOPT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CVXOPT.md index c9f942cb16d5..7d7e60287bad 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CVXOPT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CVXOPT.md @@ -6,6 +6,10 @@ hide: CVXOPT ====== + +CVXOPT is a free software package for convex optimization based on the Python programming language. Its main purpose is to make the development of software for convex optimization applications straightforward by building on Python's extensive standard library and on the strengths of Python as a high-level programming language. + +https://cvxopt.org # Available modules @@ -17,7 +21,7 @@ To start using CVXOPT, load one of these modules using a `module load` command l module load CVXOPT/1.3.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Calib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Calib.md index f45cdb30f12c..deae2348ff21 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Calib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Calib.md @@ -6,6 +6,10 @@ hide: Calib ===== + +Calib clusters paired-end reads using their barcodes and sequences. Calib is suitable for ampliconsequencing where a molecule is tagged, then PCR amplified with high depth, also known as Unique Molecule Identifier(UMI) sequencing. + +https://github.com/vpc-ccg/calib # Available modules @@ -17,7 +21,7 @@ To start using Calib, load one of these modules using a `module load` command li module load Calib/0.3.4-GCC-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cantera.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cantera.md index e02b75f65b5b..ca78b7ac232e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cantera.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cantera.md @@ -6,6 +6,10 @@ hide: Cantera ======= + +Chemical kinetics, thermodynamics, and transport tool suite + +https://github.com/Cantera/cantera # Available modules @@ -17,7 +21,7 @@ To start using Cantera, load one of these modules using a `module load` command module load Cantera/3.0.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CapnProto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CapnProto.md index 3563ad1f20e6..f1eabf3d9a09 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CapnProto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CapnProto.md @@ -6,6 +6,10 @@ hide: CapnProto ========= + +Cap’n Proto is an insanely fast data interchange format and capability-based RPC system. + +https://capnproto.org # Available modules @@ -17,7 +21,7 @@ To start using CapnProto, load one of these modules using a `module load` comman module load CapnProto/1.0.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cartopy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cartopy.md index 61a719fef286..6fd2391613e9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cartopy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cartopy.md @@ -6,6 +6,10 @@ hide: Cartopy ======= + +Cartopy is a Python package designed to make drawing maps for data analysis and visualisation easy. + +https://scitools.org.uk/cartopy/docs/latest/ # Available modules @@ -17,7 +21,7 @@ To start using Cartopy, load one of these modules using a `module load` command module load Cartopy/0.22.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -27,3 +31,40 @@ module load Cartopy/0.22.0-foss-2023a |Cartopy/0.19.0.post1-intel-2020b|-|x|x|-|x|x| |Cartopy/0.19.0.post1-foss-2020b|-|x|x|x|x|x| |Cartopy/0.18.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### Cartopy/0.22.0-foss-2023a + +This is a list of extensions included in the module: + +Cartopy-0.22.0, OWSLib-0.29.3, pyepsg-0.4.0, pykdtree-1.3.10, pyshp-2.3.1 + +### Cartopy/0.20.3-foss-2022a + +This is a list of extensions included in the module: + +Cartopy-0.20.3, OWSLib-0.27.2, pyepsg-0.4.0, pykdtree-1.3.5, pyshp-2.3.1 + +### Cartopy/0.20.3-foss-2021b + +This is a list of extensions included in the module: + +Cartopy-0.20.3, OWSLib-0.26.0, pyepsg-0.4.0, pykdtree-1.3.5, pyproj-3.2.1, pyshp-2.3.1 + +### Cartopy/0.19.0.post1-intel-2020b + +This is a list of extensions included in the module: + +Cartopy-0.19.0.post1, OWSLib-0.24.1, pyepsg-0.4.0, pykdtree-1.3.4, pyshp-2.1.3 + +### Cartopy/0.19.0.post1-foss-2020b + +This is a list of extensions included in the module: + +Cartopy-0.19.0.post1, OWSLib-0.24.1, pyepsg-0.4.0, pykdtree-1.3.4, pyshp-2.1.3 + +### Cartopy/0.18.0-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +Cartopy-0.18.0, OWSLib-0.20.0, pyepsg-0.4.0, pykdtree-1.3.1, pyshp-2.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Casanovo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Casanovo.md index 0a706a73fd21..6b937b3fc9d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Casanovo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Casanovo.md @@ -6,6 +6,10 @@ hide: Casanovo ======== + +De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model + +https://casanovo.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using Casanovo, load one of these modules using a `module load` command module load Casanovo/3.3.0-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Casanovo/3.3.0-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |Casanovo/3.3.0-foss-2022a|x|x|x|x|x|x| + + +### Casanovo/3.3.0-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +casanovo-3.3.0, Deprecated-1.2.13, depthcharge-ms-0.1.0, fastobo-0.12.2, lark-1.1.5, natsort-8.3.1, PyGithub-1.58.1, pyteomics-4.5.6, spectrum-utils-0.4.1 + +### Casanovo/3.3.0-foss-2022a + +This is a list of extensions included in the module: + +casanovo-3.3.0, Deprecated-1.2.13, depthcharge-ms-0.1.0, fastobo-0.12.2, lark-1.1.5, natsort-8.3.1, PyGithub-1.58.1, pyteomics-4.5.6, spectrum-utils-0.4.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CatBoost.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CatBoost.md index 167030bd4053..ef44db749859 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CatBoost.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CatBoost.md @@ -6,6 +6,10 @@ hide: CatBoost ======== + +CatBoost is a high-performance open source library for gradient boosting on decision trees + +https://catboost.ai # Available modules @@ -17,8 +21,15 @@ To start using CatBoost, load one of these modules using a `module load` command module load CatBoost/1.2-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CatBoost/1.2-gfbf-2023a|x|x|x|x|x|x| + + +### CatBoost/1.2-gfbf-2023a + +This is a list of extensions included in the module: + +CatBoost-1.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CatLearn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CatLearn.md index 386a855fcb9e..dbe25a025599 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CatLearn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CatLearn.md @@ -6,6 +6,10 @@ hide: CatLearn ======== + +An environment for atomistic machine learning in Python for applications in catalysis + +https://catlearn.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using CatLearn, load one of these modules using a `module load` command module load CatLearn/0.6.2-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CatLearn/0.6.2-intel-2022a|x|x|x|x|x|x| + + +### CatLearn/0.6.2-intel-2022a + +This is a list of extensions included in the module: + +CatLearn-0.6.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CatMAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CatMAP.md index e5652f22102a..8a6cd51c9a66 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CatMAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CatMAP.md @@ -6,6 +6,10 @@ hide: CatMAP ====== + +Catalyst Micro-kinetic Analysis Package for automated creation of micro-kinetic models used in catalyst screening. + +https://catmap.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using CatMAP, load one of these modules using a `module load` command l module load CatMAP/20220519-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CatMAP/20220519-foss-2022a|x|x|x|x|x|x| + + +### CatMAP/20220519-foss-2022a + +This is a list of extensions included in the module: + +CatMAP-20220519 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Catch2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Catch2.md index 4ada8fef1e7f..bacc45c71735 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Catch2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Catch2.md @@ -6,6 +6,10 @@ hide: Catch2 ====== + +A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later + +https://github.com/catchorg/Catch2 # Available modules @@ -17,7 +21,7 @@ To start using Catch2, load one of these modules using a `module load` command l module load Catch2/2.13.9-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cbc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cbc.md index ae8251cfb887..82e316447924 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cbc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cbc.md @@ -6,6 +6,10 @@ hide: Cbc === + +Cbc (Coin-or branch and cut) is an open-source mixed integer linear programmingsolver written in C++. It can be used as a callable library or using astand-alone executable. + +https://github.com/coin-or/Cbc # Available modules @@ -17,7 +21,7 @@ To start using Cbc, load one of these modules using a `module load` command like module load Cbc/2.10.11-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellBender.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellBender.md index 2dd00008f982..858a2b5a264b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellBender.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellBender.md @@ -6,6 +6,10 @@ hide: CellBender ========== + +CellBender is a software package for eliminating technical artifacts fromhigh-throughput single-cell RNA sequencing (scRNA-seq) data. + +http://github.com/broadinstitute/CellBender # Available modules @@ -17,9 +21,22 @@ To start using CellBender, load one of these modules using a `module load` comma module load CellBender/0.3.1-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CellBender/0.3.1-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| |CellBender/0.3.1-foss-2022a|x|x|x|x|x|x| + + +### CellBender/0.3.1-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +cellbender-0.3.1, comm-0.2.1, ipykernel-6.20.2, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-4.12.0, setuptools-69.0.3, traitlets-5.14.1 + +### CellBender/0.3.1-foss-2022a + +This is a list of extensions included in the module: + +cellbender-0.3.1, comm-0.2.1, ipykernel-6.20.2, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-4.12.0, setuptools-69.0.3, traitlets-5.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellOracle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellOracle.md index 3d9231203de6..c7907ff3deb5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellOracle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellOracle.md @@ -6,6 +6,10 @@ hide: CellOracle ========== + +CellOracle is a Python library for in silico gene perturbation analyses using single-cell omics dataand Gene Regulatory Network models. + +https://github.com/morris-lab/CellOracle # Available modules @@ -17,8 +21,15 @@ To start using CellOracle, load one of these modules using a `module load` comma module load CellOracle/0.12.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CellOracle/0.12.0-foss-2022a|x|x|x|x|x|x| + + +### CellOracle/0.12.0-foss-2022a + +This is a list of extensions included in the module: + +celloracle-0.12.0, jupyter-1.0.0, jupyter-console-6.4.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellProfiler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellProfiler.md index 37aa08fc0ecc..254277fb5dc1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellProfiler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellProfiler.md @@ -6,6 +6,10 @@ hide: CellProfiler ============ + +CellProfiler is a free open-source software designed to enable biologists without training incomputer vision or programming to quantitatively measure phenotypes from thousands of images automatically. + +http://cellprofiler.org/ # Available modules @@ -17,8 +21,15 @@ To start using CellProfiler, load one of these modules using a `module load` com module load CellProfiler/4.2.4-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CellProfiler/4.2.4-foss-2021a|x|x|x|-|x|x| + + +### CellProfiler/4.2.4-foss-2021a + +This is a list of extensions included in the module: + +CellProfiler-4.2.4, cellprofiler-core-4.2.4, centrosome-1.2.1, deprecation-2.1.0, h5py-3.6.0, inflect-6.0.2, mahotas-1.4.13, prokaryote-2.4.4, pydantic-1.10.2, python-bioformats-4.0.6, python-javabridge-4.0.3, pyzmq-22.3.0, sentry-sdk-1.10.1, typing_extensions-4.4.0, urllib3-1.26.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger-ATAC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger-ATAC.md index 89a6f46fb139..03243de2eede 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger-ATAC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger-ATAC.md @@ -6,6 +6,10 @@ hide: CellRanger-ATAC =============== + +Cell Ranger ATAC is a set of analysis pipelines that process Chromium Single Cell ATAC data. + +https://support.10xgenomics.com/single-cell-atac/software/pipelines/latest/what-is-cell-ranger-atac # Available modules @@ -17,7 +21,7 @@ To start using CellRanger-ATAC, load one of these modules using a `module load` module load CellRanger-ATAC/2.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger.md index b8378e6816d8..02e5165529ee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger.md @@ -6,6 +6,10 @@ hide: CellRanger ========== + +Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate gene-cell matrices and perform clustering and gene expression analysis. + +https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger # Available modules @@ -17,7 +21,7 @@ To start using CellRanger, load one of these modules using a `module load` comma module load CellRanger/7.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRank.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRank.md index 5e752517ba2c..d94b36717a57 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRank.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRank.md @@ -6,6 +6,10 @@ hide: CellRank ======== + +CellRank is a toolkit to uncover cellular dynamics based on Markov state modeling of single-cell data. It contains two main modules:kernels compute cell-cell transition probabilities and estimators generatehypothesis based on these. + +https://cellrank.readthedocs.io/en/stable/ # Available modules @@ -17,9 +21,22 @@ To start using CellRank, load one of these modules using a `module load` command module load CellRank/2.0.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CellRank/2.0.2-foss-2022a|x|x|x|x|x|x| |CellRank/1.4.0-foss-2021a|-|x|x|-|x|x| + + +### CellRank/2.0.2-foss-2022a + +This is a list of extensions included in the module: + +cellrank-2.0.2, docrep-0.3.2, progressbar2-4.3.2, pygam-0.9.0, pygpcca-1.0.4, python-utils-3.8.1 + +### CellRank/1.4.0-foss-2021a + +This is a list of extensions included in the module: + +CellRank-1.4.0, docrep-0.3.2, joblib-1.0.1, progressbar2-3.53.1, pygam-0.8.0, pygpcca-1.0.2, python-utils-2.5.6, wrapt-1.12.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellTypist.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellTypist.md index 730ab57dffcc..420a20c105f4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellTypist.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellTypist.md @@ -6,6 +6,10 @@ hide: CellTypist ========== + +A tool for semi-automatic cell type annotation + +https://www.celltypist.org/ # Available modules @@ -17,9 +21,16 @@ To start using CellTypist, load one of these modules using a `module load` comma module load CellTypist/1.6.2-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CellTypist/1.6.2-foss-2023a|x|x|x|x|x|x| |CellTypist/1.0.0-foss-2021b|x|x|x|-|x|x| + + +### CellTypist/1.6.2-foss-2023a + +This is a list of extensions included in the module: + +celltypist-1.6.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cellpose.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cellpose.md index 3df9bb095dd4..e84fae32a426 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cellpose.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cellpose.md @@ -6,6 +6,10 @@ hide: Cellpose ======== + +a generalist algorithm for cellular segmentation + +https://www.cellpose.org # Available modules @@ -17,9 +21,22 @@ To start using Cellpose, load one of these modules using a `module load` command module load Cellpose/2.2.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Cellpose/2.2.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |Cellpose/2.2.2-foss-2022a|x|-|x|x|x|x| + + +### Cellpose/2.2.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +Cellpose-2.2.2, fastremap-1.13.5, natsort-8.3.1, roifile-2023.5.12, tifffile-2023.4.12 + +### Cellpose/2.2.2-foss-2022a + +This is a list of extensions included in the module: + +Cellpose-2.2.2, fastremap-1.13.5, natsort-8.3.1, roifile-2023.5.12, tifffile-2023.4.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Centrifuge.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Centrifuge.md index db4ac9be08b2..18247d558273 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Centrifuge.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Centrifuge.md @@ -6,6 +6,10 @@ hide: Centrifuge ========== + +Classifier for metagenomic sequences + +https://ccb.jhu.edu/software/centrifuge # Available modules @@ -17,7 +21,7 @@ To start using Centrifuge, load one of these modules using a `module load` comma module load Centrifuge/1.0.4-beta-gompi-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cereal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cereal.md index a8fc9036b3bb..4d0cd049dc3b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cereal.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cereal.md @@ -6,6 +6,10 @@ hide: Cereal ====== + +cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to befast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone. + +https://uscilab.github.io/cereal/ # Available modules @@ -17,7 +21,7 @@ To start using Cereal, load one of these modules using a `module load` command l module load Cereal/1.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ceres-Solver.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ceres-Solver.md index 6d723b43d53d..6f0eb312e709 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ceres-Solver.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ceres-Solver.md @@ -6,6 +6,10 @@ hide: Ceres-Solver ============ + +Ceres Solver is an open source C++ library for modeling and solving large, complicated optimizationproblems + +http://ceres-solver.org # Available modules @@ -17,7 +21,7 @@ To start using Ceres-Solver, load one of these modules using a `module load` com module load Ceres-Solver/2.2.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cgl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cgl.md index 4cc85c140dc2..93202b55abbf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cgl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cgl.md @@ -6,6 +6,10 @@ hide: Cgl === + +The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators thatcan be used with other COIN-OR packages that make use of cuts, such as, amongothers, the linear solver Clp or the mixed integer linear programming solversCbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use orcommunicate with a solver. It does not directly call a solver. + +https://github.com/coin-or/Cgl # Available modules @@ -17,7 +21,7 @@ To start using Cgl, load one of these modules using a `module load` command like module load Cgl/0.60.8-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CharLS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CharLS.md index 17cc88bfc2b9..f77f35e666b8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CharLS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CharLS.md @@ -6,6 +6,10 @@ hide: CharLS ====== + +CharLS is a C++ implementation of the JPEG-LS standard for lossless and near-lossless imagecompression and decompression. JPEG-LS is a low-complexity image compression standard that matches JPEG 2000compression ratios. + +https://github.com/team-charls/charls # Available modules @@ -17,7 +21,7 @@ To start using CharLS, load one of these modules using a `module load` command l module load CharLS/2.4.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CheMPS2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CheMPS2.md index 2d0473c128c3..1485bfcc1114 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CheMPS2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CheMPS2.md @@ -6,6 +6,10 @@ hide: CheMPS2 ======= + +CheMPS2 is a scientific library which contains a spin-adapted implementation of thedensity matrix renormalization group (DMRG) for ab initio quantum chemistry. + +https://github.com/SebWouters/CheMPS2 # Available modules @@ -17,7 +21,7 @@ To start using CheMPS2, load one of these modules using a `module load` command module load CheMPS2/1.8.12-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Check.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Check.md index 5b36ba1c2b60..7926bc066466 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Check.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Check.md @@ -6,6 +6,10 @@ hide: Check ===== + +Check is a unit testing framework for C. It features a simple interface fordefining unit tests, putting little in the way of the developer. Tests arerun in a separate address space, so both assertion failures and code errorsthat cause segmentation faults or other signals can be caught. Test resultsare reportable in the following: Subunit, TAP, XML, and a generic loggingformat. + +https://libcheck.github.io/check/ # Available modules @@ -17,7 +21,7 @@ To start using Check, load one of these modules using a `module load` command li module load Check/0.15.2-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CheckM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CheckM.md index 800d74c72a23..b99ecaec76bc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CheckM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CheckM.md @@ -6,6 +6,10 @@ hide: CheckM ====== + +CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. + +https://github.com/Ecogenomics/CheckM # Available modules @@ -17,7 +21,7 @@ To start using CheckM, load one of these modules using a `module load` command l module load CheckM/1.1.3-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Chimera.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Chimera.md index db150ef1876e..28613b80a7e5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Chimera.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Chimera.md @@ -6,6 +6,10 @@ hide: Chimera ======= + +UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. + +https://www.cgl.ucsf.edu/chimera/ # Available modules @@ -17,7 +21,7 @@ To start using Chimera, load one of these modules using a `module load` command module load Chimera/1.16-linux_x86_64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Circlator.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Circlator.md index fde91551add1..a4998f59c42a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Circlator.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Circlator.md @@ -6,6 +6,10 @@ hide: Circlator ========= + +A tool to circularize genome assemblies.s + +https://github.com/sanger-pathogens/circlator/ # Available modules @@ -17,8 +21,15 @@ To start using Circlator, load one of these modules using a `module load` comman module load Circlator/1.5.5-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Circlator/1.5.5-foss-2023a|x|x|x|x|x|x| + + +### Circlator/1.5.5-foss-2023a + +This is a list of extensions included in the module: + +Circlator-1.5.5, pymummer-0.11.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Circuitscape.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Circuitscape.md index fe2443eab24f..14f87a7b82d5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Circuitscape.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Circuitscape.md @@ -6,6 +6,10 @@ hide: Circuitscape ============ + +Algorithms from circuit theory to predict connectivity in heterogeneous landscapes + +https://github.com/Circuitscape/Circuitscape.jl # Available modules @@ -17,8 +21,15 @@ To start using Circuitscape, load one of these modules using a `module load` com module load Circuitscape/5.12.3-Julia-1.7.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Circuitscape/5.12.3-Julia-1.7.2|x|x|x|x|x|x| + + +### Circuitscape/5.12.3-Julia-1.7.2 + +This is a list of extensions included in the module: + +AbstractFFTs-1.2.1, Adapt-3.4.0, AlgebraicMultigrid-0.5.1, ArchGDAL-0.8.5, ArnoldiMethod-0.2.0, Arrow_jll-10.0.0+1, boost_jll-1.76.0+1, Bzip2_jll-1.0.8+0, CEnum-0.4.2, ChainRulesCore-1.15.6, ChangesOfVariables-0.1.4, Circuitscape-5.12.3, Colors-0.12.10, ColorSchemes-3.20.0, ColorTypes-0.11.4, ColorVectorSpace-0.9.9, CommonSolve-0.2.3, Compat-4.5.0, DataAPI-1.14.0, DataStructures-0.18.13, DataValueInterfaces-1.0.0, DiskArrays-0.3.8, DocStringExtensions-0.9.3, Expat_jll-2.4.8+0, FixedPointNumbers-0.8.4, GDAL-1.5.0, GDAL_jll-301.600.100+0, GeoFormatTypes-0.4.1, GeoInterface-0.5.7, GEOS_jll-3.11.0+0, Graphics-1.1.2, Graphs-1.7.4, GZip-0.5.1, HDF5_jll-1.12.2+2, ImageCore-0.9.4, Inflate-0.1.3, IntelOpenMP_jll-2018.0.3+2, InverseFunctions-0.1.8, IrrationalConstants-0.1.1, IterativeSolvers-0.9.2, IteratorInterfaceExtensions-1.0.0, JLLWrappers-1.4.1, JpegTurbo_jll-2.1.2+0, Kerberos_krb5_jll-1.19.3+0, LERC_jll-3.0.0+1, libgeotiff_jll-100.700.100+0, Libiconv_jll-1.16.1+2, libpng_jll-1.6.37+5, LibPQ_jll-14.3.0+1, Libtiff_jll-4.4.0+0, LittleCMS_jll-2.12.0+0, LogExpFunctions-0.3.19, Lz4_jll-1.9.3+0, LZO_jll-2.10.1+0, MacroTools-0.5.10, MappedArrays-0.4.1, MKL_jll-2022.2.0+0, MosaicViews-0.3.4, NaNMath-1.0.1, NetCDF_jll-400.902.5+1, OffsetArrays-1.12.8, OpenJpeg_jll-2.4.0+0, OpenSpecFun_jll-0.5.5+0, OpenSSL_jll-1.1.19+0, OrderedCollections-1.4.1, PaddedViews-0.5.11, Pardiso-0.5.4, PlotUtils-1.3.4, Preferences-1.3.0, PROJ_jll-900.100.0+0, RecipesBase-1.3.0, Reexport-1.2.2, SimpleTraits-0.9.4, SimpleWeightedGraphs-1.2.1, snappy_jll-1.1.9+1, SnoopPrecompile-2.9.5, SpecialFunctions-2.1.7, SQLite_jll-3.40.0+1, StackViews-0.1.1, StaticArrays-1.5.11, StaticArraysCore-1.4.0, Tables-1.10.0, TableTraits-1.0.1, TensorCore-0.1.1, Thrift_jll-0.16.0+0, XML2_jll-2.9.14+0, Zstd_jll-1.5.2+0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clair3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clair3.md index 08c2ac3f73f3..2b0903daf344 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Clair3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Clair3.md @@ -6,6 +6,10 @@ hide: Clair3 ====== + +Clair3 is a germline small variant caller for long-reads.Clair3 makes the best of two major method categories: pileup calling handlesmost variant candidates with speed, and full-alignment tackles complicated candidatesto maximize precision and recall. Clair3 runs fast and has superior performance,especially at lower coverage. Clair3 is simple and modular for easy deployment andintegration. + +https://github.com/HKU-BAL/Clair3 # Available modules @@ -17,7 +21,7 @@ To start using Clair3, load one of these modules using a `module load` command l module load Clair3/1.0.4-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md index a042bd8a5f3e..505089c792b6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md @@ -6,6 +6,10 @@ hide: Clang ===== + +C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC. + +https://clang.llvm.org/ # Available modules @@ -17,7 +21,7 @@ To start using Clang, load one of these modules using a `module load` command li module load Clang/16.0.6-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clp.md index 1a517c3f8a9a..8cc83cd6b856 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Clp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Clp.md @@ -6,6 +6,10 @@ hide: Clp === + +Clp (Coin-or linear programming) is an open-source linear programming solver.It is primarily meant to be used as a callable library, but a basic,stand-alone executable version is also available. + +https://github.com/coin-or/Clp # Available modules @@ -17,7 +21,7 @@ To start using Clp, load one of these modules using a `module load` command like module load Clp/1.17.9-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clustal-Omega.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clustal-Omega.md index ade378d6ae8c..969d66a0f88c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Clustal-Omega.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Clustal-Omega.md @@ -6,6 +6,10 @@ hide: Clustal-Omega ============= + +Clustal Omega is a multiple sequence alignment program for proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms + +http://www.clustal.org/omega/ # Available modules @@ -17,7 +21,7 @@ To start using Clustal-Omega, load one of these modules using a `module load` co module load Clustal-Omega/1.2.4-intel-compilers-2021.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ClustalW2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ClustalW2.md index 1fe7a2438afa..c7a5ebe5b2d5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ClustalW2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ClustalW2.md @@ -6,6 +6,10 @@ hide: ClustalW2 ========= + +ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. + +https://www.ebi.ac.uk/Tools/msa/clustalw2/ # Available modules @@ -17,7 +21,7 @@ To start using ClustalW2, load one of these modules using a `module load` comman module load ClustalW2/2.1-intel-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CmdStanR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CmdStanR.md index 5526f7859e2f..24a9de5b7b21 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CmdStanR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CmdStanR.md @@ -6,6 +6,10 @@ hide: CmdStanR ======== + +CmdStanR is a lightweight interface to Stan for R users + +https://mc-stan.org/cmdstanr # Available modules @@ -17,7 +21,7 @@ To start using CmdStanR, load one of these modules using a `module load` command module load CmdStanR/0.7.1-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CodAn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CodAn.md index 2918d9b46ec2..259abec6b2a9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CodAn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CodAn.md @@ -6,6 +6,10 @@ hide: CodAn ===== + +CodAn (Coding sequence Annotator) is a computational tool designed to characterize the CDS and UTRregions on transcripts from any Eukaryote species. + +https://github.com/pedronachtigall/CodAn # Available modules @@ -17,7 +21,7 @@ To start using CodAn, load one of these modules using a `module load` command li module load CodAn/1.2-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CoinUtils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CoinUtils.md index bf54b31b329a..1ca5b1b6de51 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CoinUtils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CoinUtils.md @@ -6,6 +6,10 @@ hide: CoinUtils ========= + +CoinUtils (Coin-OR Utilities) is an open-source collection of classes andfunctions that are generally useful to more than one COIN-OR project. + +https://github.com/coin-or/CoinUtils # Available modules @@ -17,7 +21,7 @@ To start using CoinUtils, load one of these modules using a `module load` comman module load CoinUtils/2.11.10-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ColabFold.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ColabFold.md index 50d717848e44..d44be32998b8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ColabFold.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ColabFold.md @@ -6,6 +6,10 @@ hide: ColabFold ========= + +Making protein folding accessible to all. Predict proteins structures both ingoogle colab and on your machine. + +https://github.com/sokrypton/ColabFold # Available modules @@ -17,9 +21,22 @@ To start using ColabFold, load one of these modules using a `module load` comman module load ColabFold/1.5.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |ColabFold/1.5.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |ColabFold/1.5.2-foss-2022a|-|-|x|-|x|-| + + +### ColabFold/1.5.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +colabfold-1.5.2 + +### ColabFold/1.5.2-foss-2022a + +This is a list of extensions included in the module: + +colabfold-1.5.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CompareM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CompareM.md index 5081c6fa8650..00f578e70fd0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CompareM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CompareM.md @@ -6,6 +6,10 @@ hide: CompareM ======== + +A toolbox for comparative genomics. + +https://github.com/dparks1134/CompareM # Available modules @@ -17,8 +21,15 @@ To start using CompareM, load one of these modules using a `module load` command module load CompareM/0.1.2-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CompareM/0.1.2-foss-2021b|x|x|x|-|x|x| + + +### CompareM/0.1.2-foss-2021b + +This is a list of extensions included in the module: + +biolib-0.1.9, comparem-0.1.2, future-0.18.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Compress-Raw-Zlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Compress-Raw-Zlib.md index d774172ec5d6..b2ba2dcf7d44 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Compress-Raw-Zlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Compress-Raw-Zlib.md @@ -6,6 +6,10 @@ hide: Compress-Raw-Zlib ================= + +Low-Level Interface to zlib or zlib-ng compression library + +https://metacpan.org/pod/Compress::Raw::Zlib # Available modules @@ -17,7 +21,7 @@ To start using Compress-Raw-Zlib, load one of these modules using a `module load module load Compress-Raw-Zlib/2.202-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Concorde.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Concorde.md index 6ed76f1d4e4f..df3ade8bf7b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Concorde.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Concorde.md @@ -6,6 +6,10 @@ hide: Concorde ======== + +Concorde is a computer code for the symmetric traveling salesman problem (TSP) and some related network optimization problems + +https://www.math.uwaterloo.ca/tsp/concorde.html # Available modules @@ -17,7 +21,7 @@ To start using Concorde, load one of these modules using a `module load` command module load Concorde/20031219-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CoordgenLibs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CoordgenLibs.md index b98f03cb4026..730bac4e4fcc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CoordgenLibs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CoordgenLibs.md @@ -6,6 +6,10 @@ hide: CoordgenLibs ============ + +Schrodinger-developed 2D Coordinate Generation + +https://github.com/schrodinger/coordgenlibs # Available modules @@ -17,7 +21,7 @@ To start using CoordgenLibs, load one of these modules using a `module load` com module load CoordgenLibs/3.0.1-iimpi-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CopyKAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CopyKAT.md index fe859c48fb57..61bc3641346d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CopyKAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CopyKAT.md @@ -6,6 +6,10 @@ hide: CopyKAT ======= + +CopyKAT: Inference of genomic copy number and subclonal structure of human tumors from high-throughput single cell RNAseq data + +https://github.com/navinlabcode/copykat # Available modules @@ -17,7 +21,7 @@ To start using CopyKAT, load one of these modules using a `module load` command module load CopyKAT/1.1.0-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Coreutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Coreutils.md index e21fbe815a33..dda958762a76 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Coreutils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Coreutils.md @@ -6,6 +6,10 @@ hide: Coreutils ========= + +The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system. + +https://www.gnu.org/software/coreutils/ # Available modules @@ -17,7 +21,7 @@ To start using Coreutils, load one of these modules using a `module load` comman module load Coreutils/8.32-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CppUnit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CppUnit.md index 77bfb2622ab3..a3edb1985ca2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CppUnit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CppUnit.md @@ -6,6 +6,10 @@ hide: CppUnit ======= + +CppUnit is the C++ port of the famous JUnit framework for unit testing. + +https://freedesktop.org/wiki/Software/cppunit/ # Available modules @@ -17,7 +21,7 @@ To start using CppUnit, load one of these modules using a `module load` command module load CppUnit/1.15.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CuPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CuPy.md index 893701859c55..21347dfe0915 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CuPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CuPy.md @@ -6,6 +6,10 @@ hide: CuPy ==== + +CuPy is an open-source array library accelerated with NVIDIA CUDA. + +https://cupy.dev # Available modules @@ -17,8 +21,15 @@ To start using CuPy, load one of these modules using a `module load` command lik module load CuPy/8.5.0-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |CuPy/8.5.0-fosscuda-2020b|-|-|-|-|x|-| + + +### CuPy/8.5.0-fosscuda-2020b + +This is a list of extensions included in the module: + +cupy-8.5.0, fastrlock-0.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cufflinks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cufflinks.md index daf3476ea14f..61853191bc1f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cufflinks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cufflinks.md @@ -6,6 +6,10 @@ hide: Cufflinks ========= + +Transcript assembly, differential expression, and differential regulation for RNA-Seq + +http://cole-trapnell-lab.github.io/cufflinks/ # Available modules @@ -17,7 +21,7 @@ To start using Cufflinks, load one of these modules using a `module load` comman module load Cufflinks/20190706-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cython.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cython.md index b4aeeca79ecf..816810f6802d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cython.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cython.md @@ -6,6 +6,10 @@ hide: Cython ====== + +Cython is an optimising static compiler for both the Python programminglanguage and the extended Cython programming language (based on Pyrex). + +https://cython.org/ # Available modules @@ -17,7 +21,7 @@ To start using Cython, load one of these modules using a `module load` command l module load Cython/3.0.8-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DALI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DALI.md index 10d15ca5a7a8..f4cdba382480 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DALI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DALI.md @@ -6,6 +6,10 @@ hide: DALI ==== + +R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem + +https://github.com/vibscc/DALI # Available modules @@ -17,7 +21,7 @@ To start using DALI, load one of these modules using a `module load` command lik module load DALI/2.1.2-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DAS_Tool.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DAS_Tool.md index 1cfa48decbca..d6fb1f3e9c23 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DAS_Tool.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DAS_Tool.md @@ -6,6 +6,10 @@ hide: DAS_Tool ======== + +DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly. + +https://github.com/cmks/DAS_Tool # Available modules @@ -17,8 +21,15 @@ To start using DAS_Tool, load one of these modules using a `module load` command module load DAS_Tool/1.1.1-foss-2021b-R-4.1.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |DAS_Tool/1.1.1-foss-2021b-R-4.1.2|x|x|x|x|x|x| + + +### DAS_Tool/1.1.1-foss-2021b-R-4.1.2 + +This is a list of extensions included in the module: + +DAS_Tool-1.1.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DB.md index 2d66e734ed7f..e4f1b66d7ba6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DB.md @@ -6,6 +6,10 @@ hide: DB == + +Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects. + +https://www.oracle.com/technetwork/products/berkeleydb # Available modules @@ -17,7 +21,7 @@ To start using DB, load one of these modules using a `module load` command like: module load DB/18.1.40-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DBD-mysql.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DBD-mysql.md index 325146bf034c..17c979d70c30 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DBD-mysql.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DBD-mysql.md @@ -6,6 +6,10 @@ hide: DBD-mysql ========= + +Perl binding for MySQL + +https://metacpan.org/pod/distribution/DBD-mysql/lib/DBD/mysql.pm # Available modules @@ -17,7 +21,7 @@ To start using DBD-mysql, load one of these modules using a `module load` comman module load DBD-mysql/4.050-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DBG2OLC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DBG2OLC.md index 422641159140..d1276aca9d29 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DBG2OLC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DBG2OLC.md @@ -6,6 +6,10 @@ hide: DBG2OLC ======= + +DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies + +https://github.com/yechengxi/DBG2OLC # Available modules @@ -17,7 +21,7 @@ To start using DBG2OLC, load one of these modules using a `module load` command module load DBG2OLC/20200724-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DB_File.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DB_File.md index b8d4f945f930..b3aeba7f395a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DB_File.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DB_File.md @@ -6,6 +6,10 @@ hide: DB_File ======= + +Perl5 access to Berkeley DB version 1.x. + +https://perldoc.perl.org/DB_File.html # Available modules @@ -17,7 +21,7 @@ To start using DB_File, load one of these modules using a `module load` command module load DB_File/1.858-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DBus.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DBus.md index d433dffcb690..292ddaaa7b45 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DBus.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DBus.md @@ -6,6 +6,10 @@ hide: DBus ==== + +D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed. + +https://dbus.freedesktop.org/ # Available modules @@ -17,7 +21,7 @@ To start using DBus, load one of these modules using a `module load` command lik module load DBus/1.15.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DETONATE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DETONATE.md index a480df0b726d..84a9385df823 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DETONATE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DETONATE.md @@ -6,6 +6,10 @@ hide: DETONATE ======== + +DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL. Both packages are mainly intended to be used to evaluate de novo transcriptome assemblies, although REF-EVAL can be used to compare sets of any kinds of genomic sequences. + +http://deweylab.biostat.wisc.edu/detonate/ # Available modules @@ -17,7 +21,7 @@ To start using DETONATE, load one of these modules using a `module load` command module load DETONATE/1.11-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DFT-D3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DFT-D3.md index 3ff77adba610..78ed27bad000 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DFT-D3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DFT-D3.md @@ -6,6 +6,10 @@ hide: DFT-D3 ====== + +DFT-D3 implements a dispersion correction for density functionals, Hartree-Fock and semi-empirical quantum chemical methods. + +http://www.thch.uni-bonn.de/tc/index.php?section=downloads&subsection=DFT-D3&lang=english # Available modules @@ -17,7 +21,7 @@ To start using DFT-D3, load one of these modules using a `module load` command l module load DFT-D3/3.2.0-intel-compilers-2021.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DIA-NN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DIA-NN.md index ac251fed0fb4..0fa1524597fa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DIA-NN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DIA-NN.md @@ -6,6 +6,10 @@ hide: DIA-NN ====== + +DIA-NN - a universal software for data-independent acquisition (DIA) proteomics data processing + +https://github.com/vdemichev/DiaNN # Available modules @@ -17,7 +21,7 @@ To start using DIA-NN, load one of these modules using a `module load` command l module load DIA-NN/1.8.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DIALOGUE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DIALOGUE.md index 7e80b6774951..9033d51aeeca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DIALOGUE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DIALOGUE.md @@ -6,6 +6,10 @@ hide: DIALOGUE ======== + +DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment. + +https://github.com/livnatje/DIALOGUE # Available modules @@ -17,7 +21,7 @@ To start using DIALOGUE, load one of these modules using a `module load` command module load DIALOGUE/1.0-20230228-foss-2021b-R-4.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DIAMOND.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DIAMOND.md index bd6b3ee4edaa..d45a98bd728a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DIAMOND.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DIAMOND.md @@ -6,6 +6,10 @@ hide: DIAMOND ======= + +Accelerated BLAST compatible local sequence aligner + +https://github.com/bbuchfink/diamond # Available modules @@ -17,7 +21,7 @@ To start using DIAMOND, load one of these modules using a `module load` command module load DIAMOND/2.1.8-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DIANA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DIANA.md index f765be7bb9b4..eb4a5b09b389 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DIANA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DIANA.md @@ -6,6 +6,10 @@ hide: DIANA ===== + +DIANA (DIsplacement ANAlyzer) is an extensive multi-purpose finite element software package that is dedicated, but not exclusive, to a wide range of problems arising in Civil engineering including structural, geotechnical, tunnelling, earthquake disciplines and oil & gas engineering. + +https://dianafea.com/content/diana # Available modules @@ -17,7 +21,7 @@ To start using DIANA, load one of these modules using a `module load` command li module load DIANA/10.5 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DIRAC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DIRAC.md index 889c52462b27..baa35ce3e88e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DIRAC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DIRAC.md @@ -6,6 +6,10 @@ hide: DIRAC ===== + +DIRAC: Program for Atomic and Molecular Direct Iterative Relativistic All-electron Calculations + +http://www.diracprogram.org # Available modules @@ -17,7 +21,7 @@ To start using DIRAC, load one of these modules using a `module load` command li module load DIRAC/19.0-intel-2020a-Python-2.7.18-mpi-int64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DL_POLY_Classic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DL_POLY_Classic.md index d3c930c044aa..c25bef0180bf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DL_POLY_Classic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DL_POLY_Classic.md @@ -6,6 +6,10 @@ hide: DL_POLY_Classic =============== + +DL_POLY Classic is a general purpose (parallel and serial)molecular dynamics simulation package. + +https://gitlab.com/DL_POLY_Classic/dl_poly # Available modules @@ -17,7 +21,7 @@ To start using DL_POLY_Classic, load one of these modules using a `module load` module load DL_POLY_Classic/1.10-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DMCfun.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DMCfun.md index 20215b4e6c9a..a66a4b581934 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DMCfun.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DMCfun.md @@ -6,6 +6,10 @@ hide: DMCfun ====== + +Diffusion Model of Conflict (DMC) in Reaction Time Tasks + +https://cran.r-project.org/web/packages/DMCfun # Available modules @@ -17,8 +21,15 @@ To start using DMCfun, load one of these modules using a `module load` command l module load DMCfun/1.3.0-foss-2019b-R-3.6.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |DMCfun/1.3.0-foss-2019b-R-3.6.2|-|x|x|-|x|x| + + +### DMCfun/1.3.0-foss-2019b-R-3.6.2 + +This is a list of extensions included in the module: + +DEoptim-2.2-5, DMCfun-1.3.0, dplyr-1.0.5, glue-1.4.2, lifecycle-1.0.0, optextras-2019-12.4, optimr-2019-12.16, Rcgmin-2013-2.21, rlang-0.4.10, Rvmmin-2018-4.17, setRNG-2013.9-1, tidyselect-1.1.0, vctrs-0.3.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DOLFIN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DOLFIN.md index abdfd54edbaa..76f0267fee22 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DOLFIN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DOLFIN.md @@ -6,6 +6,10 @@ hide: DOLFIN ====== + +DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE (Problem Solving Environment) for ordinary and partial differential equations. + +https://bitbucket.org/fenics-project/dolfin # Available modules @@ -17,7 +21,7 @@ To start using DOLFIN, load one of these modules using a `module load` command l module load DOLFIN/2019.1.0.post0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DRAGMAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DRAGMAP.md index 93d7917b5f45..b966fdfd43b2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DRAGMAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DRAGMAP.md @@ -6,6 +6,10 @@ hide: DRAGMAP ======= + +Dragmap is the Dragen mapper/aligner Open Source Software. + +https://github.com/Illumina/DRAGMAP # Available modules @@ -17,7 +21,7 @@ To start using DRAGMAP, load one of these modules using a `module load` command module load DRAGMAP/1.3.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DROP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DROP.md index c20b41560132..31f942d2dbe4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DROP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DROP.md @@ -6,6 +6,10 @@ hide: DROP ==== + +Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders + +https://gagneurlab-drop.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using DROP, load one of these modules using a `module load` command lik module load DROP/1.1.0-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |DROP/1.1.0-foss-2020b-R-4.0.3|-|x|x|x|x|x| |DROP/1.0.3-foss-2020b-R-4.0.3|-|x|x|x|x|x| + + +### DROP/1.1.0-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: + +about-5.2, click-log-0.3.2, DROP-1.1.0, graphviz-0.17, pandoc-1.1.0, plumbum-1.7.0, ply-3.11, wbuild-1.8.0 + +### DROP/1.0.3-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: + +about-5.2, click-log-0.3.2, DROP-1.0.3, graphviz-0.16, pandoc-1.0.2, ply-3.11, wbuild-1.8.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DUBStepR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DUBStepR.md index 4d17f9e510bf..c05f73dc6b59 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DUBStepR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DUBStepR.md @@ -6,6 +6,10 @@ hide: DUBStepR ======== + +DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selectionalgorithm for cell type identification in single-cell RNA-sequencing data. + +https://github.com/prabhakarlab/DUBStepR # Available modules @@ -17,7 +21,7 @@ To start using DUBStepR, load one of these modules using a `module load` command module load DUBStepR/1.2.0-foss-2021b-R-4.1.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Dakota.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Dakota.md index b4b7cc342b5b..a7c1e34cef7a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Dakota.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Dakota.md @@ -6,6 +6,10 @@ hide: Dakota ====== + +The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ. Broadly, the Dakota software's advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models. + +https://dakota.sandia.gov/ # Available modules @@ -17,7 +21,7 @@ To start using Dakota, load one of these modules using a `module load` command l module load Dakota/6.16.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Dalton.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Dalton.md index 291f83c93c60..bd020f283557 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Dalton.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Dalton.md @@ -6,6 +6,10 @@ hide: Dalton ====== + +The Dalton code is a powerful tool for a wide range of molecular properties at different levels of theory. Any published work arising from use of one of the Dalton2016 programs must acknowledge that by a proper reference, https://www.daltonprogram.org/www/citation.html. + +https://daltonprogram.org/ # Available modules @@ -17,7 +21,7 @@ To start using Dalton, load one of these modules using a `module load` command l module load Dalton/2020.0-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DeepLoc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DeepLoc.md index b85b81b2e210..880980366b11 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DeepLoc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DeepLoc.md @@ -6,6 +6,10 @@ hide: DeepLoc ======= + +DeepLoc 2.0 predicts the subcellular localization(s) of eukaryotic proteins + +https://services.healthtech.dtu.dk/services/DeepLoc-2.0 # Available modules @@ -17,8 +21,15 @@ To start using DeepLoc, load one of these modules using a `module load` command module load DeepLoc/2.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |DeepLoc/2.0-foss-2022b|x|x|x|x|x|x| + + +### DeepLoc/2.0-foss-2022b + +This is a list of extensions included in the module: + +bio-1.6.2, DeepLoc-2.0, gprofiler-official-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Delly.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Delly.md index 12c684f4b6a6..66e2a109a2f9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Delly.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Delly.md @@ -6,6 +6,10 @@ hide: Delly ===== + +Delly is an integrated structural variant (SV) predictionmethod that can discover, genotype and visualize deletions, tandem duplications,inversions and translocations at single-nucleotide resolution in short-readmassively parallel sequencing data. It uses paired-ends, split-reads andread-depth to sensitively and accurately delineate genomic rearrangementsthroughout the genome. + +https://github.com/dellytools/delly/ # Available modules @@ -17,7 +21,7 @@ To start using Delly, load one of these modules using a `module load` command li module load Delly/0.8.7-gompi-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md index 26baba3ca1c3..ce055671a4e8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md @@ -6,6 +6,10 @@ hide: DendroPy ======== + +A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. + +https://pypi.python.org/pypi/DendroPy/ # Available modules @@ -17,7 +21,7 @@ To start using DendroPy, load one of these modules using a `module load` command module load DendroPy/4.6.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DensPart.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DensPart.md index c7ad48a7361c..896f7c8a16a9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DensPart.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DensPart.md @@ -6,6 +6,10 @@ hide: DensPart ======== + +Atoms-in-molecules density partitioning schemes based on stockholder recipe + +https://github.com/theochem/denspart # Available modules @@ -17,7 +21,7 @@ To start using DensPart, load one of these modules using a `module load` command module load DensPart/20220603-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Deprecated.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Deprecated.md index 5187e708f636..c74517b92a73 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Deprecated.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Deprecated.md @@ -6,6 +6,10 @@ hide: Deprecated ========== + +If you need to mark a function or a method as deprecated, you can use the @deprecated decorator. + +https://github.com/tantale/deprecated # Available modules @@ -17,9 +21,22 @@ To start using Deprecated, load one of these modules using a `module load` comma module load Deprecated/1.2.13-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Deprecated/1.2.13-foss-2022a|x|x|x|x|x|x| |Deprecated/1.2.13-foss-2021a|x|x|x|x|x|x| + + +### Deprecated/1.2.13-foss-2022a + +This is a list of extensions included in the module: + +Deprecated-1.2.13, wrapt-1.12.1 + +### Deprecated/1.2.13-foss-2021a + +This is a list of extensions included in the module: + +Deprecated-1.2.13, wrapt-1.15.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DiCE-ML.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DiCE-ML.md index 1d524c032374..ab5f23aa21d7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DiCE-ML.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DiCE-ML.md @@ -6,6 +6,10 @@ hide: DiCE-ML ======= + +Diverse Counterfactual Explanations (DiCE) for ML + +https://interpret.ml/DiCE # Available modules @@ -17,7 +21,7 @@ To start using DiCE-ML, load one of these modules using a `module load` command module load DiCE-ML/0.9-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Dice.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Dice.md index f5c0e383e590..6b41dd4471ce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Dice.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Dice.md @@ -6,6 +6,10 @@ hide: Dice ==== + +Dice contains code for performing SHCI, VMC, GFMC, DMC, FCIQMC, stochastic MRCIand SC-NEVPT2, and AFQMC calculations with a focus on ab initio systems. + +https://github.com/sanshar/Dice # Available modules @@ -17,7 +21,7 @@ To start using Dice, load one of these modules using a `module load` command lik module load Dice/20240101-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DoubletFinder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DoubletFinder.md index 858ee2dbcff8..07b4a56991bd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DoubletFinder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DoubletFinder.md @@ -6,6 +6,10 @@ hide: DoubletFinder ============= + +R package for detecting doublets in single-cell RNA sequencing data + +https://github.com/chris-mcginnis-ucsf/DoubletFinder # Available modules @@ -17,7 +21,7 @@ To start using DoubletFinder, load one of these modules using a `module load` co module load DoubletFinder/2.0.3-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Doxygen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Doxygen.md index 173114d41120..28166e75d557 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Doxygen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Doxygen.md @@ -6,6 +6,10 @@ hide: Doxygen ======= + +Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D. + +https://www.doxygen.org # Available modules @@ -17,7 +21,7 @@ To start using Doxygen, load one of these modules using a `module load` command module load Doxygen/1.9.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Dsuite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Dsuite.md index 3a11ceb3693c..15c6e05eca8a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Dsuite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Dsuite.md @@ -6,6 +6,10 @@ hide: Dsuite ====== + +Fast calculation of the ABBA-BABA statistics across many populations/species + +https://github.com/millanek/Dsuite # Available modules @@ -17,7 +21,7 @@ To start using Dsuite, load one of these modules using a `module load` command l module load Dsuite/20210718-intel-compilers-2021.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DualSPHysics.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DualSPHysics.md index 4d90ac20f08c..cc1110f8cf86 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DualSPHysics.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DualSPHysics.md @@ -6,6 +6,10 @@ hide: DualSPHysics ============ + +DualSPHysics is based on the Smoothed Particle Hydrodynamics model named SPHysics. The code is developed to study free-surface flow phenomena where Eulerian methods can be difficult to apply, such as waves or impact of dam-breaks on off-shore structures. DualSPHysics is a set of C++, CUDA and Java codes designed to deal with real-life engineering problems. + +https://dual.sphysics.org/ # Available modules @@ -17,7 +21,7 @@ To start using DualSPHysics, load one of these modules using a `module load` com module load DualSPHysics/5.0.175-GCC-11.2.0-CUDA-11.4.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DyMat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DyMat.md index 80eb054967d9..8ff5ed786e13 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DyMat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DyMat.md @@ -6,6 +6,10 @@ hide: DyMat ===== + +Read and process result files from Dymola and OpenModelica with Python. + +https://www.j-raedler.de/projects/DyMat # Available modules @@ -17,7 +21,7 @@ To start using DyMat, load one of these modules using a `module load` command li module load DyMat/0.7-foss-2021b-2020-12-12 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EDirect.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EDirect.md index 5f7296ba73b1..6ac02e903cdb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/EDirect.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/EDirect.md @@ -6,6 +6,10 @@ hide: EDirect ======= + +Entrez Direct (EDirect) provides access to the NCBI's suite ofinterconnected databases from a Unix terminal window. Search terms are enteredas command-line arguments. Individual operations are connected with Unix pipesto construct multi-step queries. Selected records can then be retrieved in avariety of formats. + +https://www.ncbi.nlm.nih.gov/books/NBK25501/ # Available modules @@ -17,7 +21,7 @@ To start using EDirect, load one of these modules using a `module load` command module load EDirect/20.5.20231006-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ELPA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ELPA.md index 70e2d0ca9252..a7ec0a8411f0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ELPA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ELPA.md @@ -6,6 +6,10 @@ hide: ELPA ==== + +Eigenvalue SoLvers for Petaflop-Applications . + +https://elpa.rzg.mpg.de # Available modules @@ -17,7 +21,7 @@ To start using ELPA, load one of these modules using a `module load` command lik module load ELPA/2021.05.001-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EMBOSS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EMBOSS.md index ec34f0e24490..8e16f93aae34 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/EMBOSS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/EMBOSS.md @@ -6,6 +6,10 @@ hide: EMBOSS ====== + +EMBOSS is 'The European Molecular Biology Open Software Suite'. EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. + +https://emboss.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using EMBOSS, load one of these modules using a `module load` command l module load EMBOSS/6.6.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ESM-2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ESM-2.md index d49b67e7f047..fc645a9ed3d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ESM-2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ESM-2.md @@ -6,6 +6,10 @@ hide: ESM-2 ===== + +ESM-2 outperforms all tested single-sequence protein language models across a range of structure prediction tasks. ESMFold harnesses the ESM-2 language model to generate accurate structure predictions end to end directly from the sequence of a protein. + +https://github.com/facebookresearch/esm # Available modules @@ -17,9 +21,16 @@ To start using ESM-2, load one of these modules using a `module load` command li module load ESM-2/2.0.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |ESM-2/2.0.0-foss-2022b|x|x|x|x|x|x| |ESM-2/2.0.0-foss-2021a|x|x|x|-|x|x| + + +### ESM-2/2.0.0-foss-2022b + +This is a list of extensions included in the module: + +antlr4-python3-runtime-4.9.3, fair-esm-2.0.0, omegaconf-2.3.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ESMF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ESMF.md index e09eaa13b2de..9ff1cbfd6fa4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ESMF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ESMF.md @@ -6,6 +6,10 @@ hide: ESMF ==== + +The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications. + +https://www.earthsystemcog.org/projects/esmf/ # Available modules @@ -17,7 +21,7 @@ To start using ESMF, load one of these modules using a `module load` command lik module load ESMF/8.2.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ESMPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ESMPy.md index 89cc733e4f4f..82d861d3a91a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ESMPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ESMPy.md @@ -6,6 +6,10 @@ hide: ESMPy ===== + +Earth System Modeling Framework (ESMF) Python Interface + +https://earthsystemmodeling.org/esmpy # Available modules @@ -17,7 +21,7 @@ To start using ESMPy, load one of these modules using a `module load` command li module load ESMPy/8.0.1-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ETE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ETE.md index 2ac7fc694009..10c69b89acb3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ETE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ETE.md @@ -6,6 +6,10 @@ hide: ETE === + +A Python framework for the analysis and visualization of trees + +http://etetoolkit.org # Available modules @@ -17,7 +21,7 @@ To start using ETE, load one of these modules using a `module load` command like module load ETE/3.1.3-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EUKulele.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EUKulele.md index b99ad8aac0a7..3bf7dd4e4fc3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/EUKulele.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/EUKulele.md @@ -6,6 +6,10 @@ hide: EUKulele ======== + +EUKulele is a Python program for taxonomic annotation of microbes in metatranscriptomic and metagenomic samples, with special emphasis on eukaryote discovery. + +https://github.com/AlexanderLabWHOI/EUKulele # Available modules @@ -17,9 +21,22 @@ To start using EUKulele, load one of these modules using a `module load` command module load EUKulele/2.0.6-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |EUKulele/2.0.6-foss-2022a|x|x|x|x|x|x| |EUKulele/1.0.4-foss-2020b|-|x|x|-|x|x| + + +### EUKulele/2.0.6-foss-2022a + +This is a list of extensions included in the module: + +dill-0.3.6, EUKulele-2.0.6, joblib-1.3.1, latexcodec-2.0.1, multiprocess-0.70.14, oset-0.1.3, pybtex-0.24.0, pybtex-docutils-1.0.3, pytest-cov-4.1.0, python-coveralls-2.9.3, sphinxcontrib-bibtex-1.0.0 + +### EUKulele/1.0.4-foss-2020b + +This is a list of extensions included in the module: + +apipkg-1.5, coverage-5.4, dill-0.3.3, EUKulele-1.0.4, execnet-1.8.0, latexcodec-2.0.1, multiprocess-0.70.11.1, oset-0.1.3, pybtex-0.24.0, pybtex-docutils-1.0.0, pytest-cov-2.11.1, pytest-forked-1.3.0, pytest-xdist-2.2.1, python-coveralls-2.9.3, sphinxcontrib-bibtex-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EasyBuild.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EasyBuild.md index 8c1424574be1..ebc4b03944ff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/EasyBuild.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/EasyBuild.md @@ -6,6 +6,10 @@ hide: EasyBuild ========= + +EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way. + +https://easybuilders.github.io/easybuild # Available modules @@ -17,7 +21,7 @@ To start using EasyBuild, load one of these modules using a `module load` comman module load EasyBuild/4.9.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Eigen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Eigen.md index 30a2129a379d..0bc2647990fb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Eigen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Eigen.md @@ -6,6 +6,10 @@ hide: Eigen ===== + +Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. + +https://eigen.tuxfamily.org # Available modules @@ -17,7 +21,7 @@ To start using Eigen, load one of these modules using a `module load` command li module load Eigen/3.4.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Elk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Elk.md index 8b920d09cd0e..0fb1fadd8a52 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Elk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Elk.md @@ -6,6 +6,10 @@ hide: Elk === + +An all-electron full-potential linearisedaugmented-plane wave (FP-LAPW) code with many advanced features. Writtenoriginally at Karl-Franzens-Universität Graz as a milestone of theEXCITING EU Research and Training Network, the code is designed to be assimple as possible so that new developments in the field of densityfunctional theory (DFT) can be added quickly and reliably. + +http://elk.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using Elk, load one of these modules using a `module load` command like module load Elk/7.0.12-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EpiSCORE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EpiSCORE.md index 77c073ea7abd..eaf92587b3a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/EpiSCORE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/EpiSCORE.md @@ -6,6 +6,10 @@ hide: EpiSCORE ======== + +Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles + +https://github.com/aet21/EpiSCORE # Available modules @@ -17,7 +21,7 @@ To start using EpiSCORE, load one of these modules using a `module load` command module load EpiSCORE/0.9.5-20220621-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Excel-Writer-XLSX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Excel-Writer-XLSX.md index e9df740b53c6..e5a31384fc9e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Excel-Writer-XLSX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Excel-Writer-XLSX.md @@ -6,6 +6,10 @@ hide: Excel-Writer-XLSX ================= + +The Excel::Writer::XLSX module can be used to create an Excel file in the 2007+ XLSX format.Multiple worksheets can be added to a workbook and formatting can be applied to cells. Text, numbers, and formulascan be written to the cells. + +https://metacpan.org/pod/Excel::Writer::XLSX # Available modules @@ -17,7 +21,7 @@ To start using Excel-Writer-XLSX, load one of these modules using a `module load module load Excel-Writer-XLSX/1.09-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Exonerate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Exonerate.md index 319ab780f9d2..678568e5e812 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Exonerate.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Exonerate.md @@ -6,6 +6,10 @@ hide: Exonerate ========= + +Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. + +https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate # Available modules @@ -17,7 +21,7 @@ To start using Exonerate, load one of these modules using a `module load` comman module load Exonerate/2.4.0-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ExtremeLy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ExtremeLy.md index 5f3ba1aad7e8..8116cd6774d7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ExtremeLy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ExtremeLy.md @@ -6,6 +6,10 @@ hide: ExtremeLy ========= + +A python package for Extreme Value Analysis. + +https://github.com/SURYA-LAMICHANEY/ExtremeLy # Available modules @@ -17,8 +21,15 @@ To start using ExtremeLy, load one of these modules using a `module load` comman module load ExtremeLy/2.3.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |ExtremeLy/2.3.0-foss-2022a|x|x|x|x|x|x| + + +### ExtremeLy/2.3.0-foss-2022a + +This is a list of extensions included in the module: + +evt-0.0.2, ExtremeLy-2.3.0, seaborn-0.13.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FALCON.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FALCON.md index 415e847a7a37..e3ab6e299be7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FALCON.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FALCON.md @@ -6,6 +6,10 @@ hide: FALCON ====== + +Falcon: a set of tools for fast aligning long reads for consensus and assembly + +https://github.com/PacificBiosciences/FALCON # Available modules @@ -17,8 +21,15 @@ To start using FALCON, load one of these modules using a `module load` command l module load FALCON/1.8.8-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |FALCON/1.8.8-intel-2019b-Python-2.7.16|-|x|x|-|x|x| + + +### FALCON/1.8.8-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +FALCON-1.8.8, networkx-1.10, pypeFLOW-20170504 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FASTA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FASTA.md index 26f6b87284bc..6a27f9349e95 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FASTA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FASTA.md @@ -6,6 +6,10 @@ hide: FASTA ===== + +The FASTA programs find regions of local or global (new) similarity between protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. + +https://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml # Available modules @@ -17,7 +21,7 @@ To start using FASTA, load one of these modules using a `module load` command li module load FASTA/36.3.8i-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FASTX-Toolkit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FASTX-Toolkit.md index 0f67fb587b21..b9456b2799c8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FASTX-Toolkit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FASTX-Toolkit.md @@ -6,6 +6,10 @@ hide: FASTX-Toolkit ============= + +The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. + +http://hannonlab.cshl.edu/fastx_toolkit/ # Available modules @@ -17,9 +21,16 @@ To start using FASTX-Toolkit, load one of these modules using a `module load` co module load FASTX-Toolkit/0.0.14-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |FASTX-Toolkit/0.0.14-GCC-11.3.0|x|x|x|x|x|x| |FASTX-Toolkit/0.0.14-GCC-9.3.0|-|x|x|-|x|x| + + +### FASTX-Toolkit/0.0.14-GCC-11.3.0 + +This is a list of extensions included in the module: + +PerlIO::gzip-0.20 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FDS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FDS.md index f6a4e743b73b..03fa368eabbb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FDS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FDS.md @@ -6,6 +6,10 @@ hide: FDS === + +Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires. + +https://pages.nist.gov/fds-smv/ # Available modules @@ -17,7 +21,7 @@ To start using FDS, load one of these modules using a `module load` command like module load FDS/6.8.0-intel-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FEniCS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FEniCS.md index 5c0609e11096..e50435bbe6fa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FEniCS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FEniCS.md @@ -6,6 +6,10 @@ hide: FEniCS ====== + +FEniCS is a computing platform for solving partial differential equations (PDEs). + +https://fenicsproject.org/ # Available modules @@ -17,7 +21,7 @@ To start using FEniCS, load one of these modules using a `module load` command l module load FEniCS/2019.1.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FFAVES.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FFAVES.md index b23615b4c857..539aec38da2a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FFAVES.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FFAVES.md @@ -6,6 +6,10 @@ hide: FFAVES ====== + +Functional Feature Amplification Via Entropy Sorting (FFAVES).Use FFAVES to amplify the signal of groups of co-regulating genes in an unsupervised, multivariate manner.By amplifying the signal of genes with correlated expression, while filtering out genes that are randomly expressed,we can identify a subset of genes more predictive of different cell types.The output of FFAVES can then be used in our second algorithm, entropy sort feature weighting (ESFW),to create a ranked list of genes that are most likely to pertain to distinct sub-populations of cells in an scRNA-seq dataset. + +https://github.com/aradley/FFAVES # Available modules @@ -17,8 +21,15 @@ To start using FFAVES, load one of these modules using a `module load` command l module load FFAVES/2022.11.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |FFAVES/2022.11.1-foss-2022a|x|x|x|x|x|x| + + +### FFAVES/2022.11.1-foss-2022a + +This is a list of extensions included in the module: + +dill-0.3.8, FFAVES-2022.11.1, multiprocess-0.70.16 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FFC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FFC.md index a6a685934a27..e7a9c7d9dce2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FFC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FFC.md @@ -6,6 +6,10 @@ hide: FFC === + +The FEniCS Form Compiler (FFC) is a compiler for finite element variational forms. + +https://bitbucket.org/fenics-project/ffc # Available modules @@ -17,7 +21,7 @@ To start using FFC, load one of these modules using a `module load` command like module load FFC/2019.1.0.post0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.MPI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.MPI.md index a63386647f29..29b76ca12bf2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.MPI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.MPI.md @@ -6,6 +6,10 @@ hide: FFTW.MPI ======== + +FFTW is a C subroutine library for computing the discrete Fourier transform (DFT)in one or more dimensions, of arbitrary input size, and of both real and complex data. + +https://www.fftw.org # Available modules @@ -17,7 +21,7 @@ To start using FFTW.MPI, load one of these modules using a `module load` command module load FFTW.MPI/3.3.10-gompi-2023b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.md index 503e1eb99c02..3032b029cfc1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.md @@ -6,6 +6,10 @@ hide: FFTW ==== + +FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. + +http://www.fftw.org # Available modules @@ -17,7 +21,7 @@ To start using FFTW, load one of these modules using a `module load` command lik module load FFTW/3.3.10-gompi-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FFmpeg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FFmpeg.md index 605c75397381..37b6be370071 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FFmpeg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FFmpeg.md @@ -6,6 +6,10 @@ hide: FFmpeg ====== + +A complete, cross-platform solution to record, convert and stream audio and video. + +https://www.ffmpeg.org/ # Available modules @@ -17,7 +21,7 @@ To start using FFmpeg, load one of these modules using a `module load` command l module load FFmpeg/6.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FIAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FIAT.md index b54916cc556d..d0ae313e83c0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FIAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FIAT.md @@ -6,6 +6,10 @@ hide: FIAT ==== + +The FInite element Automatic Tabulator (FIAT) supportsgeneration of arbitrary order instances of the Lagrange elements onlines, triangles, and tetrahedra. It is also capable of generatingarbitrary order instances of Jacobi-type quadrature rules on the sameelement shapes. + +https://bitbucket.org/fenics-project/fiat # Available modules @@ -17,7 +21,7 @@ To start using FIAT, load one of these modules using a `module load` command lik module load FIAT/2019.1.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FIGARO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FIGARO.md index d650e6d7b899..98939f4580ee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FIGARO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FIGARO.md @@ -6,6 +6,10 @@ hide: FIGARO ====== + +FIGARO: An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters. + +https://github.com/Zymo-Research/figaro # Available modules @@ -17,7 +21,7 @@ To start using FIGARO, load one of these modules using a `module load` command l module load FIGARO/1.1.2-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLAC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLAC.md index 270644de6a06..abdc7c6a3992 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLAC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLAC.md @@ -6,6 +6,10 @@ hide: FLAC ==== + +FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaningthat audio is compressed in FLAC without any loss in quality. + +https://xiph.org/flac/ # Available modules @@ -17,7 +21,7 @@ To start using FLAC, load one of these modules using a `module load` command lik module load FLAC/1.4.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLAIR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLAIR.md index f5fee7037b34..ba7075aa169a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLAIR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLAIR.md @@ -6,6 +6,10 @@ hide: FLAIR ===== + +FLAIR (Full-Length Alternative Isoform analysis of RNA) for the correction, isoform definition, and alternative splicing analysis of noisy reads. FLAIR has primarily been used for nanopore cDNA, native RNA, and PacBio sequencing reads. + +https://github.com/BrooksLabUCSC/flair # Available modules @@ -17,9 +21,22 @@ To start using FLAIR, load one of these modules using a `module load` command li module load FLAIR/1.5.1-20200630-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |FLAIR/1.5.1-20200630-foss-2019b-Python-3.7.4|-|x|x|-|x|-| |FLAIR/1.5-foss-2019b-Python-3.7.4|-|x|x|-|x|-| + + +### FLAIR/1.5.1-20200630-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +kerneltree-0.0.5, ncls-0.0.53 + +### FLAIR/1.5-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +kerneltree-0.0.5, ncls-0.0.53 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLANN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLANN.md index 79bb679b4aa3..03693c3421e7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLANN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLANN.md @@ -6,6 +6,10 @@ hide: FLANN ===== + +FLANN is a library for performing fast approximate nearest neighbor searches in high dimensional spaces. + +https://github.com/mariusmuja/flann/ # Available modules @@ -17,7 +21,7 @@ To start using FLANN, load one of these modules using a `module load` command li module load FLANN/1.9.2-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLASH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLASH.md index dbf70ae22267..7f28e4ea136d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLASH.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLASH.md @@ -6,6 +6,10 @@ hide: FLASH ===== + +FLASH (Fast Length Adjustment of SHort reads) is a very fastand accurate software tool to merge paired-end reads from next-generationsequencing experiments. FLASH is designed to merge pairs of reads when theoriginal DNA fragments are shorter than twice the length of reads. Theresulting longer reads can significantly improve genome assemblies. They canalso improve transcriptome assembly when FLASH is used to merge RNA-seq data. + +https://ccb.jhu.edu/software/FLASH/ # Available modules @@ -17,7 +21,7 @@ To start using FLASH, load one of these modules using a `module load` command li module load FLASH/2.2.00-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLTK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLTK.md index fc371c3fdbbf..2be3ada8aebc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLTK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLTK.md @@ -6,6 +6,10 @@ hide: FLTK ==== + +FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation. + +https://www.fltk.org # Available modules @@ -17,7 +21,7 @@ To start using FLTK, load one of these modules using a `module load` command lik module load FLTK/1.3.5-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLUENT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLUENT.md index 772433f415f4..19421a1c733c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLUENT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLUENT.md @@ -6,6 +6,10 @@ hide: FLUENT ====== + +ANSYS FLUENT software contains the broad physical modeling capabilities neededto model flow, turbulence, heat transfer, and reactions for industrial applications ranging fromair flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms,from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants. + +https://www.ansys.com/products/fluids/ansys-fluent # Available modules @@ -17,7 +21,7 @@ To start using FLUENT, load one of these modules using a `module load` command l module load FLUENT/2023R1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FMM3D.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FMM3D.md index 929693b97835..6618035add05 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FMM3D.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FMM3D.md @@ -6,6 +6,10 @@ hide: FMM3D ===== + +Flatiron Institute Fast Multipole Libraries: a set of libraries to compute N-bodyinteractions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on amulti-core shared-memory machine. + +https://fmm3d.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using FMM3D, load one of these modules using a `module load` command li module load FMM3D/20211018-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FMPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FMPy.md index 6096e8b79132..a4ab2c21191f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FMPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FMPy.md @@ -6,6 +6,10 @@ hide: FMPy ==== + +FMPy is a free Python library to simulate Functional Mock-up Units (FMUs). + +https://github.com/CATIA-Systems/FMPy # Available modules @@ -17,8 +21,15 @@ To start using FMPy, load one of these modules using a `module load` command lik module load FMPy/0.3.2-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |FMPy/0.3.2-foss-2021a|-|x|x|-|x|x| + + +### FMPy/0.3.2-foss-2021a + +This is a list of extensions included in the module: + +dash-2.0.0, dash-bootstrap-components-1.0.0, dash-core-components-2.0.0, dash-html-components-2.0.0, dash-table-5.0.0, Flask-Compress-1.10.1, FMPy-0.3.2, idna-2.8, lark-parser-0.12.0, msgpack-1.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FSL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FSL.md index 625274e1bf44..3552be8e24f1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FSL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FSL.md @@ -6,6 +6,10 @@ hide: FSL === + +FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. + +https://www.fmrib.ox.ac.uk/fsl/ # Available modules @@ -17,10 +21,17 @@ To start using FSL, load one of these modules using a `module load` command like module load FSL/6.0.7.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |FSL/6.0.7.2|x|x|x|x|x|x| |FSL/6.0.5.1-foss-2021a|-|x|x|-|x|x| |FSL/6.0.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### FSL/6.0.5.1-foss-2021a + +This is a list of extensions included in the module: + +fslpy-3.5.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FabIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FabIO.md index bafc96234984..be629697f8f8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FabIO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FabIO.md @@ -6,6 +6,10 @@ hide: FabIO ===== + +FabIO is an I/O library for images produced by 2D X-ray detectors and written in Python. FabIO support images detectors from a dozen of companies (including Mar, Dectris, ADSC, Hamamatsu, Oxford, ...), for a total of 20 different file formats (like CBF, EDF, TIFF, ...) and offers an unified interface to their headers (as a python dictionary) and datasets (as a numpy ndarray of integers or floats). + +http://www.silx.org # Available modules @@ -17,7 +21,7 @@ To start using FabIO, load one of these modules using a `module load` command li module load FabIO/0.11.0-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Faiss.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Faiss.md index b62bf6961e07..bfe04f539fba 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Faiss.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Faiss.md @@ -6,6 +6,10 @@ hide: Faiss ===== + +Faiss is a library for efficient similarity search and clustering of dense vectors. + +https://github.com/facebookresearch/faiss # Available modules @@ -17,7 +21,7 @@ To start using Faiss, load one of these modules using a `module load` command li module load Faiss/1.7.2-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastANI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastANI.md index 9115aecd3774..0df92f9bd19d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastANI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastANI.md @@ -6,6 +6,10 @@ hide: FastANI ======= + +FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies. + +https://github.com/ParBLiSS/FastANI # Available modules @@ -17,7 +21,7 @@ To start using FastANI, load one of these modules using a `module load` command module load FastANI/1.34-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastME.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastME.md index 1e75db4f7167..24dacc62bab3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastME.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastME.md @@ -6,6 +6,10 @@ hide: FastME ====== + +FastME: a comprehensive, accurate and fast distance-based phylogeny inference program. + +https://www.atgc-montpellier.fr/fastme/ # Available modules @@ -17,7 +21,7 @@ To start using FastME, load one of these modules using a `module load` command l module load FastME/2.1.6.3-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastQC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastQC.md index 89128cf29000..57ca44ec9cbf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastQC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastQC.md @@ -6,6 +6,10 @@ hide: FastQC ====== + +FastQC is a quality control application for high throughputsequence data. It reads in sequence data in a variety of formats and can eitherprovide an interactive application to review the results of several differentQC checks, or create an HTML based report which can be integrated into apipeline. + +https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ # Available modules @@ -17,7 +21,7 @@ To start using FastQC, load one of these modules using a `module load` command l module load FastQC/0.11.9-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastQ_Screen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastQ_Screen.md index 271f22d546fd..cee3cff22b9e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastQ_Screen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastQ_Screen.md @@ -6,6 +6,10 @@ hide: FastQ_Screen ============ + +FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect. + +http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/ # Available modules @@ -17,7 +21,7 @@ To start using FastQ_Screen, load one of these modules using a `module load` com module load FastQ_Screen/0.14.0-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastTree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastTree.md index a721c7e2c425..2067292c7c9b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastTree.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastTree.md @@ -6,6 +6,10 @@ hide: FastTree ======== + +FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory. + +http://www.microbesonline.org/fasttree/ # Available modules @@ -17,7 +21,7 @@ To start using FastTree, load one of these modules using a `module load` command module load FastTree/2.1.11-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastViromeExplorer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastViromeExplorer.md index ac8b8b268a50..771620fdabad 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastViromeExplorer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastViromeExplorer.md @@ -6,6 +6,10 @@ hide: FastViromeExplorer ================== + +Identify the viruses/phages and their abundance in the viral metagenomics data. + +https://code.vt.edu/saima5/FastViromeExplorer # Available modules @@ -17,7 +21,7 @@ To start using FastViromeExplorer, load one of these modules using a `module loa module load FastViromeExplorer/20180422-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Fastaq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Fastaq.md index 50d895e00ee4..dd87a843fb97 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Fastaq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Fastaq.md @@ -6,6 +6,10 @@ hide: Fastaq ====== + +Python3 scripts to manipulate FASTA and FASTQ files. + +https://github.com/sanger-pathogens/Fastaq # Available modules @@ -17,7 +21,7 @@ To start using Fastaq, load one of these modules using a `module load` command l module load Fastaq/3.17.0-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Fiji.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Fiji.md index 469b477772ae..d0ae57014fbc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Fiji.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Fiji.md @@ -6,6 +6,10 @@ hide: Fiji ==== + +Fiji is an image processing package—a 'batteries-included' distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.This release is based on ImageJ-2.1.0 and Fiji-2.1.1 + +https://fiji.sc # Available modules @@ -17,7 +21,7 @@ To start using Fiji, load one of these modules using a `module load` command lik module load Fiji/2.9.0-Java-1.8 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Filtlong.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Filtlong.md index da9445ae72c8..6e96dba8b5e1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Filtlong.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Filtlong.md @@ -6,6 +6,10 @@ hide: Filtlong ======== + +Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter + +https://github.com/rrwick/Filtlong # Available modules @@ -17,7 +21,7 @@ To start using Filtlong, load one of these modules using a `module load` command module load Filtlong/0.2.0-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Fiona.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Fiona.md index 5945674e83c2..ee2353c9d126 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Fiona.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Fiona.md @@ -6,6 +6,10 @@ hide: Fiona ===== + +Fiona is designed to be simple and dependable. It focuses on reading and writing datain standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries,mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data usingmulti-layered GIS formats and zipped virtual file systems and integrates readily with other Python GISpackages such as pyproj, Rtree, and Shapely. + +https://github.com/Toblerity/Fiona # Available modules @@ -17,7 +21,7 @@ To start using Fiona, load one of these modules using a `module load` command li module load Fiona/1.9.5-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -29,3 +33,52 @@ module load Fiona/1.9.5-foss-2023a |Fiona/1.8.20-foss-2020b|-|x|x|x|x|x| |Fiona/1.8.16-foss-2020a-Python-3.8.2|-|x|x|-|x|x| |Fiona/1.8.13-intel-2019b-Python-3.7.4|-|-|x|-|x|x| + + +### Fiona/1.9.5-foss-2023a + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, fiona-1.9.5, munch-4.0.0 + +### Fiona/1.9.2-foss-2022b + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, Fiona-1.9.2, munch-2.5.0 + +### Fiona/1.8.21-foss-2022a + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.21, munch-2.5.0 + +### Fiona/1.8.21-foss-2021b + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.21, munch-2.5.0 + +### Fiona/1.8.20-intel-2020b + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.20, munch-2.5.0 + +### Fiona/1.8.20-foss-2020b + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.20, munch-2.5.0 + +### Fiona/1.8.16-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.5.0, Fiona-1.8.16, munch-2.5.0 + +### Fiona/1.8.13-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +click-7.1.1, click-plugins-1.1.1, cligj-0.5.0, Fiona-1.8.13, munch-2.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Flask.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Flask.md index 55ccff99f675..523e83a6501e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Flask.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Flask.md @@ -6,6 +6,10 @@ hide: Flask ===== + +Flask is a lightweight WSGI web application framework. It is designed to makegetting started quick and easy, with the ability to scale up to complexapplications.This module includes the Flask extensions: Flask-Cors + +https://www.palletsprojects.com/p/flask/ # Available modules @@ -17,7 +21,7 @@ To start using Flask, load one of these modules using a `module load` command li module load Flask/2.2.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,28 @@ module load Flask/2.2.2-GCCcore-11.3.0 |Flask/2.0.2-GCCcore-11.2.0|x|x|x|-|x|x| |Flask/1.1.4-GCCcore-10.3.0|x|x|x|x|x|x| |Flask/1.1.2-GCCcore-10.2.0|-|x|x|x|x|x| + + +### Flask/2.2.2-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +asgiref-3.5.2, cachelib-0.9.0, Flask-2.2.2, Flask-Cors-3.0.10, Flask-Session-0.4.0, itsdangerous-2.1.2, Werkzeug-2.2.2 + +### Flask/2.0.2-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +asgiref-3.4.1, cachelib-0.6.0, Flask-2.0.2, Flask-Cors-3.0.10, Flask-Session-0.4.0, itsdangerous-2.0.1, Werkzeug-2.0.2 + +### Flask/1.1.4-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +cachelib-0.4.1, Flask-1.1.4, Flask-Cors-3.0.10, Flask-Session-0.4.0, itsdangerous-1.1.0, Werkzeug-1.0.1 + +### Flask/1.1.2-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +Flask-1.1.2, Flask-Cors-3.0.9, itsdangerous-1.1.0, Werkzeug-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FlexiBLAS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FlexiBLAS.md index aa11133f5598..899a7be53264 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FlexiBLAS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FlexiBLAS.md @@ -6,6 +6,10 @@ hide: FlexiBLAS ========= + +FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementationused by a program without recompiling or relinking it. + +https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release # Available modules @@ -17,7 +21,7 @@ To start using FlexiBLAS, load one of these modules using a `module load` comman module load FlexiBLAS/3.3.1-GCC-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Flye.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Flye.md index 6aac056e09e8..4362f370b73d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Flye.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Flye.md @@ -6,6 +6,10 @@ hide: Flye ==== + +Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. + +https://github.com/fenderglass/Flye # Available modules @@ -17,7 +21,7 @@ To start using Flye, load one of these modules using a `module load` command lik module load Flye/2.9.2-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FragGeneScan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FragGeneScan.md index 2977301ad19d..2886d207d99f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FragGeneScan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FragGeneScan.md @@ -6,6 +6,10 @@ hide: FragGeneScan ============ + +FragGeneScan is an application for finding (fragmented) genes in short reads. + +https://omics.informatics.indiana.edu/FragGeneScan/ # Available modules @@ -17,7 +21,7 @@ To start using FragGeneScan, load one of these modules using a `module load` com module load FragGeneScan/1.31-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeBarcodes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeBarcodes.md index c362e82c808d..1af52f6434f4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeBarcodes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeBarcodes.md @@ -6,6 +6,10 @@ hide: FreeBarcodes ============ + +A package for the generation and decoding of FREE divergence error-correcting DNA barcodes + +https://github.com/hawkjo/freebarcodes # Available modules @@ -17,8 +21,15 @@ To start using FreeBarcodes, load one of these modules using a `module load` com module load FreeBarcodes/3.0.a5-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |FreeBarcodes/3.0.a5-foss-2021b|x|x|x|-|x|x| + + +### FreeBarcodes/3.0.a5-foss-2021b + +This is a list of extensions included in the module: + +dill-0.3.4, FreeBarcodes-3.0.a5, multiprocess-0.70.12.2, pathos-0.2.8, pox-0.3.0, ppft-1.6.6.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeFEM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeFEM.md index e05f3b781613..9bda1b1fd892 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeFEM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeFEM.md @@ -6,6 +6,10 @@ hide: FreeFEM ======= + +FreeFEM offers a fast interpolation algorithm and a language for the manipulation of data on multiple meshes. + +https://freefem.org # Available modules @@ -17,7 +21,7 @@ To start using FreeFEM, load one of these modules using a `module load` command module load FreeFEM/4.5-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeImage.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeImage.md index 2721a62da910..33f733ab0cdf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeImage.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeImage.md @@ -6,6 +6,10 @@ hide: FreeImage ========= + +FreeImage is an Open Source library project for developers who would like to support popular graphicsimage formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy touse, fast, multithreading safe. + +http://freeimage.sourceforge.net # Available modules @@ -17,7 +21,7 @@ To start using FreeImage, load one of these modules using a `module load` comman module load FreeImage/3.18.0-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeSurfer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeSurfer.md index 32f20b54697f..20271c8c29a9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeSurfer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeSurfer.md @@ -6,6 +6,10 @@ hide: FreeSurfer ========== + +FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. + +https://surfer.nmr.mgh.harvard.edu/ # Available modules @@ -17,7 +21,7 @@ To start using FreeSurfer, load one of these modules using a `module load` comma module load FreeSurfer/7.3.2-centos8_x86_64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeXL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeXL.md index 54060dbe41f6..51de863f7430 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeXL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeXL.md @@ -6,6 +6,10 @@ hide: FreeXL ====== + +FreeXL is an open source library to extract valid data from within anExcel (.xls) spreadsheet. + +https://www.gaia-gis.it/fossil/freexl/index # Available modules @@ -17,7 +21,7 @@ To start using FreeXL, load one of these modules using a `module load` command l module load FreeXL/1.0.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FriBidi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FriBidi.md index 0d273d5b7543..ae912ad54ae6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FriBidi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FriBidi.md @@ -6,6 +6,10 @@ hide: FriBidi ======= + +The Free Implementation of the Unicode Bidirectional Algorithm. + +https://github.com/fribidi/fribidi # Available modules @@ -17,7 +21,7 @@ To start using FriBidi, load one of these modules using a `module load` command module load FriBidi/1.0.12-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FuSeq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FuSeq.md index 1c44ba9a1c93..770fc772acc3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FuSeq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FuSeq.md @@ -6,6 +6,10 @@ hide: FuSeq ===== + +FuSeq is a novel method to discover fusion genes from paired-end RNA sequencing data. + +https://github.com/nghiavtr/FuSeq # Available modules @@ -17,7 +21,7 @@ To start using FuSeq, load one of these modules using a `module load` command li module load FuSeq/1.1.2-gompi-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FusionCatcher.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FusionCatcher.md index 100b81fd0253..d81e5a324f5e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FusionCatcher.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FusionCatcher.md @@ -6,6 +6,10 @@ hide: FusionCatcher ============= + +FusionCatcher searches for novel/known somatic fusion genes, translocations,and chimeras in RNA-seq data (paired-end or single-end reads from Illumina NGSplatforms like Solexa/HiSeq/NextSeq/MiSeq/MiniSeq) from diseased samples. + +https://github.com/ndaniel/fusioncatcher # Available modules @@ -17,7 +21,7 @@ To start using FusionCatcher, load one of these modules using a `module load` co module load FusionCatcher/1.30-foss-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GAPPadder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GAPPadder.md index 25e1d1576205..8570828fd0cf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GAPPadder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GAPPadder.md @@ -6,6 +6,10 @@ hide: GAPPadder ========= + +GAPPadder is tool for closing gaps on draft genomes with short sequencing data + +https://github.com/simoncchu/GAPPadder # Available modules @@ -17,7 +21,7 @@ To start using GAPPadder, load one of these modules using a `module load` comman module load GAPPadder/20170601-foss-2021b-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GATB-Core.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GATB-Core.md index 2708c2afc178..684ad13fa01f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GATB-Core.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GATB-Core.md @@ -6,6 +6,10 @@ hide: GATB-Core ========= + +GATB-Core is a high-performance and low memory footprint C++ library that provides a set of highly efficient algorithms to analyse NGS data sets + +https://gatb.inria.fr/software/gatb-core # Available modules @@ -17,7 +21,7 @@ To start using GATB-Core, load one of these modules using a `module load` comman module load GATB-Core/1.4.2-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GATE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GATE.md index eb04ad265b54..0742cd291095 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GATE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GATE.md @@ -6,6 +6,10 @@ hide: GATE ==== + +GATE is an advanced opensource software developed by the international OpenGATE collaboration and dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography + +http://www.opengatecollaboration.org/ # Available modules @@ -17,7 +21,7 @@ To start using GATE, load one of these modules using a `module load` command lik module load GATE/9.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GATK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GATK.md index 27c44ea8fb1d..8a5405410b26 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GATK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GATK.md @@ -6,6 +6,10 @@ hide: GATK ==== + +The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. + +https://www.broadinstitute.org/gatk/ # Available modules @@ -17,7 +21,7 @@ To start using GATK, load one of these modules using a `module load` command lik module load GATK/4.4.0.0-GCCcore-12.3.0-Java-17 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GBprocesS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GBprocesS.md index 6b5349d8885c..4c6d25b6f6d0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GBprocesS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GBprocesS.md @@ -6,6 +6,10 @@ hide: GBprocesS ========= + +GBprocesS allows for the extraction of genomic inserts from NGSdata for GBS experiments. Preprocessing is performed in different stages thatare part of a linear pipeline where the steps are performed in order. GBprocesSprovides a flexible way to adjust the functionality to your needs, as theoperations required and the execution order vary depending on the GBS protocolused. + +https://gbprocess.readthedocs.io/ # Available modules @@ -17,7 +21,7 @@ To start using GBprocesS, load one of these modules using a `module load` comman module load GBprocesS/4.0.0.post1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GCC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GCC.md index 3325bed0b5e5..af7939ee16d8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GCC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GCC.md @@ -6,6 +6,10 @@ hide: GCC === + +The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). + +https://gcc.gnu.org/ # Available modules @@ -17,7 +21,7 @@ To start using GCC, load one of these modules using a `module load` command like module load GCC/13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GCCcore.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GCCcore.md index 63a84300cc56..81effbaf9d15 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GCCcore.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GCCcore.md @@ -6,6 +6,10 @@ hide: GCCcore ======= + +The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). + +https://gcc.gnu.org/ # Available modules @@ -17,7 +21,7 @@ To start using GCCcore, load one of these modules using a `module load` command module load GCCcore/13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GConf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GConf.md index 894a132495c6..296852e2de4e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GConf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GConf.md @@ -6,6 +6,10 @@ hide: GConf ===== + +GConf is a system for storing application preferences. It is intended for user preferences; not configuration of something like Apache, or arbitrary data storage. + +https://gitlab.gnome.org/iainl/gconf # Available modules @@ -17,7 +21,7 @@ To start using GConf, load one of these modules using a `module load` command li module load GConf/3.2.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GDAL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GDAL.md index 9314c12d488f..33074f2558ae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GDAL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GDAL.md @@ -6,6 +6,10 @@ hide: GDAL ==== + +GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing. + +https://www.gdal.org # Available modules @@ -17,7 +21,7 @@ To start using GDAL, load one of these modules using a `module load` command lik module load GDAL/3.7.1-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GDB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GDB.md index 7452b9d67ffa..c3d1362f17c8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GDB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GDB.md @@ -6,6 +6,10 @@ hide: GDB === + +The GNU Project Debugger + +https://www.gnu.org/software/gdb/gdb.html # Available modules @@ -17,7 +21,7 @@ To start using GDB, load one of these modules using a `module load` command like module load GDB/9.1-GCCcore-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GDCM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GDCM.md index 390423554ccc..56d947a4ff9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GDCM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GDCM.md @@ -6,6 +6,10 @@ hide: GDCM ==== + +Grassroots DICOM: Cross-platform DICOM implementation + +https://sourceforge.net/projects/gdcm # Available modules @@ -17,7 +21,7 @@ To start using GDCM, load one of these modules using a `module load` command lik module load GDCM/3.0.21-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GDGraph.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GDGraph.md index 480b5613144d..68b9cd685318 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GDGraph.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GDGraph.md @@ -6,6 +6,10 @@ hide: GDGraph ======= + +GDGraph is a Perl package to generate charts + +https://metacpan.org/release/GDGraph # Available modules @@ -17,8 +21,15 @@ To start using GDGraph, load one of these modules using a `module load` command module load GDGraph/1.56-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |GDGraph/1.56-GCCcore-11.3.0|x|x|x|x|x|x| + + +### GDGraph/1.56-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +ExtUtils::PkgConfig-1.16, GD-2.76, GD::Graph-1.56, GD::Text-0.86 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GDRCopy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GDRCopy.md index 35f25da8ad14..ab82440f2266 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GDRCopy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GDRCopy.md @@ -6,6 +6,10 @@ hide: GDRCopy ======= + +A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology. + +https://github.com/NVIDIA/gdrcopy # Available modules @@ -17,7 +21,7 @@ To start using GDRCopy, load one of these modules using a `module load` command module load GDRCopy/2.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GEGL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GEGL.md index 6a3c69bf46a9..4b7af5853bfe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GEGL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GEGL.md @@ -6,6 +6,10 @@ hide: GEGL ==== + +GEGL (Generic Graphics Library) is a data flow based image processing framework, providing floating point processing and non-destructive image processing capabilities to GNU Image Manipulation Program (GIMP) and other projects. + +https://www.gegl.org # Available modules @@ -17,7 +21,7 @@ To start using GEGL, load one of these modules using a `module load` command lik module load GEGL/0.4.30-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GEOS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GEOS.md index dc62287e3c2c..fb8a50d0a161 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GEOS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GEOS.md @@ -6,6 +6,10 @@ hide: GEOS ==== + +GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS) + +https://trac.osgeo.org/geos # Available modules @@ -17,7 +21,7 @@ To start using GEOS, load one of these modules using a `module load` command lik module load GEOS/3.12.0-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GFF3-toolkit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GFF3-toolkit.md index 02076d68e3d9..fd01ca750ea0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GFF3-toolkit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GFF3-toolkit.md @@ -6,6 +6,10 @@ hide: GFF3-toolkit ============ + +Python programs for processing GFF3 files + +https://gff3toolkit.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using GFF3-toolkit, load one of these modules using a `module load` com module load GFF3-toolkit/2.1.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GIMP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GIMP.md index 613181effbbc..cd01944afa96 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GIMP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GIMP.md @@ -6,6 +6,10 @@ hide: GIMP ==== + +GIMP is a cross-platform image editor available for GNU/Linux, OS X, Windows and more operating systems. + +https://www.gimp.org # Available modules @@ -17,7 +21,7 @@ To start using GIMP, load one of these modules using a `module load` command lik module load GIMP/2.10.24-GCC-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GL2PS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GL2PS.md index a53373b28cc5..c767ba60401b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GL2PS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GL2PS.md @@ -6,6 +6,10 @@ hide: GL2PS ===== + +GL2PS: an OpenGL to PostScript printing library + +https://www.geuz.org/gl2ps/ # Available modules @@ -17,7 +21,7 @@ To start using GL2PS, load one of these modules using a `module load` command li module load GL2PS/1.4.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLFW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLFW.md index 78693b198415..2673ea567341 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLFW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLFW.md @@ -6,6 +6,10 @@ hide: GLFW ==== + +GLFW is an Open Source, multi-platform library for OpenGL,OpenGL ES and Vulkan development on the desktop + +https://www.glfw.org # Available modules @@ -17,7 +21,7 @@ To start using GLFW, load one of these modules using a `module load` command lik module load GLFW/3.3.8-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLIMPSE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLIMPSE.md index 558e7cd82e65..2cc1cc9547d9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLIMPSE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLIMPSE.md @@ -6,6 +6,10 @@ hide: GLIMPSE ======= + +GLIMPSE2 is a set of tools for phasing and imputation for low-coverage sequencing datasets + +https://github.com/odelaneau/GLIMPSE # Available modules @@ -17,7 +21,7 @@ To start using GLIMPSE, load one of these modules using a `module load` command module load GLIMPSE/2.0.0-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLM.md index 8693d33f2ca0..4f4a0081c9d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLM.md @@ -6,6 +6,10 @@ hide: GLM === + +OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications. + +https://github.com/g-truc/glm # Available modules @@ -17,7 +21,7 @@ To start using GLM, load one of these modules using a `module load` command like module load GLM/0.9.9.8-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLPK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLPK.md index 93f942204f2d..3b373ea33ba1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLPK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLPK.md @@ -6,6 +6,10 @@ hide: GLPK ==== + +The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. + +https://www.gnu.org/software/glpk/ # Available modules @@ -17,7 +21,7 @@ To start using GLPK, load one of these modules using a `module load` command lik module load GLPK/5.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLib.md index 692f4c23c318..4bc65d2077a3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLib.md @@ -6,6 +6,10 @@ hide: GLib ==== + +GLib is one of the base libraries of the GTK+ project + +https://www.gtk.org/ # Available modules @@ -17,7 +21,7 @@ To start using GLib, load one of these modules using a `module load` command lik module load GLib/2.77.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLibmm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLibmm.md index 9e3a7ddcb555..a981788e1dfd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLibmm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLibmm.md @@ -6,6 +6,10 @@ hide: GLibmm ====== + +C++ bindings for Glib + +https://www.gtk.org/ # Available modules @@ -17,7 +21,7 @@ To start using GLibmm, load one of these modules using a `module load` command l module load GLibmm/2.66.4-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GMAP-GSNAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GMAP-GSNAP.md index 233707c805de..5ab8a14404a5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GMAP-GSNAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GMAP-GSNAP.md @@ -6,6 +6,10 @@ hide: GMAP-GSNAP ========== + +GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences GSNAP: Genomic Short-read Nucleotide Alignment Program + +http://research-pub.gene.com/gmap/ # Available modules @@ -17,7 +21,7 @@ To start using GMAP-GSNAP, load one of these modules using a `module load` comma module load GMAP-GSNAP/2023-04-20-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GMP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GMP.md index e9d3930b007f..a1d716a7cd5c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GMP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GMP.md @@ -6,6 +6,10 @@ hide: GMP === + +GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. + +https://gmplib.org/ # Available modules @@ -17,7 +21,7 @@ To start using GMP, load one of these modules using a `module load` command like module load GMP/6.2.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GOATOOLS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GOATOOLS.md index 1c99ee2204c9..39ea775e0073 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GOATOOLS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GOATOOLS.md @@ -6,6 +6,10 @@ hide: GOATOOLS ======== + +A Python library for Gene Ontology analyses + +https://github.com/tanghaibao/goatools # Available modules @@ -17,7 +21,7 @@ To start using GOATOOLS, load one of these modules using a `module load` command module load GOATOOLS/1.3.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GObject-Introspection.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GObject-Introspection.md index e87e7741ae10..ddecd02bb192 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GObject-Introspection.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GObject-Introspection.md @@ -6,6 +6,10 @@ hide: GObject-Introspection ===================== + +GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library. + +https://gi.readthedocs.io/en/latest/ # Available modules @@ -17,7 +21,7 @@ To start using GObject-Introspection, load one of these modules using a `module module load GObject-Introspection/1.76.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW-setups.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW-setups.md index 17d60bc4cc2c..217f6afda532 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW-setups.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW-setups.md @@ -6,6 +6,10 @@ hide: GPAW-setups =========== + +PAW setup for the GPAW Density Functional Theory package. Users can install setups manually using 'gpaw install-data' or use setups from this package. The versions of GPAW and GPAW-setups can be intermixed. + +https://wiki.fysik.dtu.dk/gpaw/ # Available modules @@ -17,7 +21,7 @@ To start using GPAW-setups, load one of these modules using a `module load` comm module load GPAW-setups/0.9.20000 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW.md index 435abf781416..a58a89c51937 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW.md @@ -6,6 +6,10 @@ hide: GPAW ==== + +GPAW is a density-functional theory (DFT) Python code based on the projector-augmented wave (PAW) method and the atomic simulation environment (ASE). It uses real-space uniform grids and multigrid methods or atom-centered basis-functions. + +https://wiki.fysik.dtu.dk/gpaw/ # Available modules @@ -17,7 +21,7 @@ To start using GPAW, load one of these modules using a `module load` command lik module load GPAW/22.8.0-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GPy.md index a56e5c4b0d90..14a03803da95 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GPy.md @@ -6,6 +6,10 @@ hide: GPy === + +GPy is a Gaussian Process (GP) framework written in Python + +https://sheffieldml.github.io/GPy # Available modules @@ -17,8 +21,15 @@ To start using GPy, load one of these modules using a `module load` command like module load GPy/1.10.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |GPy/1.10.0-foss-2021b|x|x|x|-|x|x| + + +### GPy/1.10.0-foss-2021b + +This is a list of extensions included in the module: + +GPy-1.10.0, paramz-0.9.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GPyOpt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GPyOpt.md index 2e58ac4ae418..f00ec6f7553e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GPyOpt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GPyOpt.md @@ -6,6 +6,10 @@ hide: GPyOpt ====== + +GPyOpt is a Python open-source library for Bayesian Optimization + +https://sheffieldml.github.io/GPyOpt # Available modules @@ -17,8 +21,15 @@ To start using GPyOpt, load one of these modules using a `module load` command l module load GPyOpt/1.2.6-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |GPyOpt/1.2.6-intel-2020b|-|x|x|-|x|x| + + +### GPyOpt/1.2.6-intel-2020b + +This is a list of extensions included in the module: + +GPy-1.9.9, GPyOpt-1.2.6, paramz-0.9.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GPyTorch.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GPyTorch.md index 4213272acee3..000f1b4c0ee4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GPyTorch.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GPyTorch.md @@ -6,6 +6,10 @@ hide: GPyTorch ======== + +GPyTorch is a Gaussian process library implemented using PyTorch. + +https://gpytorch.ai # Available modules @@ -17,7 +21,7 @@ To start using GPyTorch, load one of these modules using a `module load` command module load GPyTorch/1.6.0-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GRASP-suite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GRASP-suite.md index 831a3e129641..fd2a088ef934 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GRASP-suite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GRASP-suite.md @@ -6,6 +6,10 @@ hide: GRASP-suite =========== + +GRASP-suite is a collection of tools and tutorials to perform and analyse ancestral sequence reconstruction. + +https://github.com/bodenlab/GRASP-suite/ # Available modules @@ -17,7 +21,7 @@ To start using GRASP-suite, load one of these modules using a `module load` comm module load GRASP-suite/2023-05-09-Java-17 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GRASS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GRASS.md index 9e6958cf087c..121892a14f6f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GRASS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GRASS.md @@ -6,6 +6,10 @@ hide: GRASS ===== + +The Geographic Resources Analysis Support System - used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization + +https://grass.osgeo.org # Available modules @@ -17,7 +21,7 @@ To start using GRASS, load one of these modules using a `module load` command li module load GRASS/8.2.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md index c70af452583c..4826a20d680e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md @@ -6,6 +6,10 @@ hide: GROMACS ======= + +GROMACS is a versatile package to perform molecular dynamics, i.e. simulate theNewtonian equations of motion for systems with hundreds to millions ofparticles.This is a CPU only build, containing both MPI and threadMPI buildsfor both single and double precision.It also contains the gmxapi extension for the single precision MPI build. + +https://www.gromacs.org # Available modules @@ -17,7 +21,7 @@ To start using GROMACS, load one of these modules using a `module load` command module load GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,28 @@ module load GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2 |GROMACS/2020-foss-2019b|-|x|x|-|x|-| |GROMACS/2019.4-foss-2019b|-|x|x|-|x|-| |GROMACS/2019.3-foss-2019b|-|x|x|-|x|-| + + +### GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2 + +This is a list of extensions included in the module: + +gmxapi-0.2.0 + +### GROMACS/2021.3-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +gmxapi-0.2.0 + +### GROMACS/2021.2-fosscuda-2020b + +This is a list of extensions included in the module: + +gmxapi-0.2.0 + +### GROMACS/2021-foss-2020b + +This is a list of extensions included in the module: + +gmxapi-0.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GSL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GSL.md index d2ad95a44493..606b8a8eca94 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GSL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GSL.md @@ -6,6 +6,10 @@ hide: GSL === + +The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. + +https://www.gnu.org/software/gsl/ # Available modules @@ -17,7 +21,7 @@ To start using GSL, load one of these modules using a `module load` command like module load GSL/2.7-intel-compilers-2021.4.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-bad.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-bad.md index 675f1ec991c0..3b595757f7be 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-bad.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-bad.md @@ -6,6 +6,10 @@ hide: GST-plugins-bad =============== + +GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. + +https://gstreamer.freedesktop.org/ # Available modules @@ -17,7 +21,7 @@ To start using GST-plugins-bad, load one of these modules using a `module load` module load GST-plugins-bad/1.20.2-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-base.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-base.md index 301624fbb20d..889fb816f897 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-base.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-base.md @@ -6,6 +6,10 @@ hide: GST-plugins-base ================ + +GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. + +https://gstreamer.freedesktop.org/ # Available modules @@ -17,7 +21,7 @@ To start using GST-plugins-base, load one of these modules using a `module load` module load GST-plugins-base/1.20.2-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GStreamer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GStreamer.md index 5c93eea60873..e1b082bbf17a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GStreamer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GStreamer.md @@ -6,6 +6,10 @@ hide: GStreamer ========= + +GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. + +https://gstreamer.freedesktop.org/ # Available modules @@ -17,7 +21,7 @@ To start using GStreamer, load one of these modules using a `module load` comman module load GStreamer/1.20.2-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTDB-Tk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTDB-Tk.md index 4c7a7a48b39a..0fbe3cb0632f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTDB-Tk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTDB-Tk.md @@ -6,6 +6,10 @@ hide: GTDB-Tk ======= + +A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. + +https://github.com/Ecogenomics/GTDBTk # Available modules @@ -17,7 +21,7 @@ To start using GTDB-Tk, load one of these modules using a `module load` command module load GTDB-Tk/2.3.2-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -27,3 +31,10 @@ module load GTDB-Tk/2.3.2-foss-2023a |GTDB-Tk/1.5.0-intel-2020b|-|x|x|-|x|x| |GTDB-Tk/1.3.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| |GTDB-Tk/1.0.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### GTDB-Tk/2.3.2-foss-2023a + +This is a list of extensions included in the module: + +GTDB-Tk-2.3.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK+.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK+.md index d22e85a4d9a1..a2c77391975a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK+.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK+.md @@ -6,6 +6,10 @@ hide: GTK+ ==== + +GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. + +https://developer.gnome.org/gtk3/stable/ # Available modules @@ -17,7 +21,7 @@ To start using GTK+, load one of these modules using a `module load` command lik module load GTK+/3.24.23-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK2.md index b8ba188ee2af..0bbc30bb9d03 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK2.md @@ -6,6 +6,10 @@ hide: GTK2 ==== + +The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications. + +https://developer.gnome.org/gtk+/stable/ # Available modules @@ -17,7 +21,7 @@ To start using GTK2, load one of these modules using a `module load` command lik module load GTK2/2.24.33-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK3.md index 1884af1732ad..4e7f6f877030 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK3.md @@ -6,6 +6,10 @@ hide: GTK3 ==== + +GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. + +https://developer.gnome.org/gtk3/stable/ # Available modules @@ -17,7 +21,7 @@ To start using GTK3, load one of these modules using a `module load` command lik module load GTK3/3.24.37-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK4.md index 8aa17d77573e..44ce87be9656 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK4.md @@ -6,6 +6,10 @@ hide: GTK4 ==== + +GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. + +https://docs.gtk.org/gtk4/ # Available modules @@ -17,7 +21,7 @@ To start using GTK4, load one of these modules using a `module load` command lik module load GTK4/4.7.0-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTS.md index e5b9a468e503..3aa870559a2e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTS.md @@ -6,6 +6,10 @@ hide: GTS === + +GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles. + +http://gts.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using GTS, load one of these modules using a `module load` command like module load GTS/0.7.6-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GUSHR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GUSHR.md index 34cadb03602c..0a9b5a9550a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GUSHR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GUSHR.md @@ -6,6 +6,10 @@ hide: GUSHR ===== + +Assembly-free construction of UTRs from short read RNA-Seq data on the basis of coding sequence annotation. + +https://github.com/Gaius-Augustus/GUSHR # Available modules @@ -17,7 +21,7 @@ To start using GUSHR, load one of these modules using a `module load` command li module load GUSHR/2020-09-28-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GapFiller.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GapFiller.md index 3b5d532f7957..50347746ca5a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GapFiller.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GapFiller.md @@ -6,6 +6,10 @@ hide: GapFiller ========= + +GapFiller is a seed-and-extend local assembler to fill the gap within paired reads. It can be used for both DNA and RNA and it has been tested on Illumina data. + +https://sourceforge.net/projects/gapfiller # Available modules @@ -17,7 +21,7 @@ To start using GapFiller, load one of these modules using a `module load` comman module load GapFiller/2.1.2-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gaussian.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gaussian.md index 14f630a78aad..8b7513b6415b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Gaussian.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gaussian.md @@ -6,6 +6,10 @@ hide: Gaussian ======== + +Gaussian is a computational chemistry software program. + +http://www.gaussian.com/ # Available modules @@ -17,7 +21,7 @@ To start using Gaussian, load one of these modules using a `module load` command module load Gaussian/g16_C.01-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gblocks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gblocks.md index 4d9b54f61f1e..da3673c0a0c9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Gblocks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gblocks.md @@ -6,6 +6,10 @@ hide: Gblocks ======= + +Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis + +http://molevol.cmima.csic.es/castresana/Gblocks.html # Available modules @@ -17,7 +21,7 @@ To start using Gblocks, load one of these modules using a `module load` command module load Gblocks/0.91b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gdk-Pixbuf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gdk-Pixbuf.md index 8918690fb7f5..e699bf002236 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Gdk-Pixbuf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gdk-Pixbuf.md @@ -6,6 +6,10 @@ hide: Gdk-Pixbuf ========== + +The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3. + +https://developer.gnome.org/gdk-pixbuf/stable/ # Available modules @@ -17,7 +21,7 @@ To start using Gdk-Pixbuf, load one of these modules using a `module load` comma module load Gdk-Pixbuf/2.42.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Geant4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Geant4.md index 793537b712e0..076462f1a624 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Geant4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Geant4.md @@ -6,6 +6,10 @@ hide: Geant4 ====== + +Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science. + +https://geant4.cern.ch/ # Available modules @@ -17,7 +21,7 @@ To start using Geant4, load one of these modules using a `module load` command l module load Geant4/11.0.2-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GeneMark-ET.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GeneMark-ET.md index 012236a0f6a9..0a8d8b70dad0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GeneMark-ET.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GeneMark-ET.md @@ -6,6 +6,10 @@ hide: GeneMark-ET =========== + +Eukaryotic gene prediction suite with automatic training + +http://exon.gatech.edu/GeneMark # Available modules @@ -17,7 +21,7 @@ To start using GeneMark-ET, load one of these modules using a `module load` comm module load GeneMark-ET/4.71-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeThreader.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeThreader.md index 00bb58769bf6..8ee9553f4ce9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeThreader.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeThreader.md @@ -6,6 +6,10 @@ hide: GenomeThreader ============== + +GenomeThreader is a software tool to compute gene structure predictions. + +http://genomethreader.org # Available modules @@ -17,7 +21,7 @@ To start using GenomeThreader, load one of these modules using a `module load` c module load GenomeThreader/1.7.3-Linux_x86_64-64bit ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeWorks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeWorks.md index 9c08c4328fdd..d2c99404e940 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeWorks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeWorks.md @@ -6,6 +6,10 @@ hide: GenomeWorks =========== + +SDK for GPU accelerated genome assembly and analysis + +https://github.com/clara-parabricks/GenomeWorks # Available modules @@ -17,8 +21,15 @@ To start using GenomeWorks, load one of these modules using a `module load` comm module load GenomeWorks/2021.02.2-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |GenomeWorks/2021.02.2-fosscuda-2020b|-|-|-|-|x|-| + + +### GenomeWorks/2021.02.2-fosscuda-2020b + +This is a list of extensions included in the module: + +genomeworks-2021.02.2, sortedcollections-2.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gerris.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gerris.md index 7656b0544559..8720ea00c87d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Gerris.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gerris.md @@ -6,6 +6,10 @@ hide: Gerris ====== + +Gerris is a Free Software program for the solution of the partial differential equations describing fluid flow + +http://gfs.sourceforge.net/wiki/index.php/Main_Page # Available modules @@ -17,7 +21,7 @@ To start using Gerris, load one of these modules using a `module load` command l module load Gerris/20131206-gompi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GetOrganelle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GetOrganelle.md index 3f98917ef4a9..22295c8fc153 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GetOrganelle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GetOrganelle.md @@ -6,6 +6,10 @@ hide: GetOrganelle ============ + +This toolkit assemblies organelle genome from genomic skimming data. + +https://github.com/Kinggerm/GetOrganelle # Available modules @@ -17,7 +21,7 @@ To start using GetOrganelle, load one of these modules using a `module load` com module load GetOrganelle/1.7.5.3-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GffCompare.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GffCompare.md index 9eadfda35143..672fb5239670 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GffCompare.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GffCompare.md @@ -6,6 +6,10 @@ hide: GffCompare ========== + +GffCompare provides classification and reference annotation mapping and matching statistics for RNA-Seq assemblies (transfrags) or other generic GFF/GTF files. + +https://github.com/gpertea/gffcompare # Available modules @@ -17,7 +21,7 @@ To start using GffCompare, load one of these modules using a `module load` comma module load GffCompare/0.12.6-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ghostscript.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ghostscript.md index a32c78b170ec..8c256f9c4f4f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ghostscript.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ghostscript.md @@ -6,6 +6,10 @@ hide: Ghostscript =========== + +Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that. + +https://ghostscript.com # Available modules @@ -17,7 +21,7 @@ To start using Ghostscript, load one of these modules using a `module load` comm module load Ghostscript/10.01.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GimmeMotifs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GimmeMotifs.md index a6d4e5dee068..d96d9fae1d01 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GimmeMotifs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GimmeMotifs.md @@ -6,6 +6,10 @@ hide: GimmeMotifs =========== + +Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments + +https://github.com/vanheeringen-lab/gimmemotifs # Available modules @@ -17,8 +21,15 @@ To start using GimmeMotifs, load one of these modules using a `module load` comm module load GimmeMotifs/0.17.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |GimmeMotifs/0.17.2-foss-2022a|x|x|x|x|x|x| + + +### GimmeMotifs/0.17.2-foss-2022a + +This is a list of extensions included in the module: + +biofluff-3.0.4, diskcache-5.4.0, feather-format-0.4.1, gimmemotifs-0.17.2, iteround-1.0.4, logomaker-0.8, loguru-0.6.0, palettable-3.3.0, xdg-6.0.0, xxhash-3.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Giotto-Suite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Giotto-Suite.md index a489a7d72ba8..a96499f1993b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Giotto-Suite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Giotto-Suite.md @@ -6,6 +6,10 @@ hide: Giotto-Suite ============ + +Giotto Suite is focused on building a modular platform for analyzing spatial-omics technologies and strives to be interoperable with other popular spatial analysis tools and classes. Using established packages optimized for large(r) data, Giotto Suite adopts fast and memory efficient methods to create an interactive analysis. + +https://github.com/drieslab/Giotto # Available modules @@ -17,8 +21,15 @@ To start using Giotto-Suite, load one of these modules using a `module load` com module load Giotto-Suite/3.0.1-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Giotto-Suite/3.0.1-foss-2022a-R-4.2.1|x|x|x|x|x|x| + + +### Giotto-Suite/3.0.1-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +beachmat-2.14.0, BiocGenerics-0.44.0, BiocParallel-1.32.5, BiocSingular-1.14.0, dbscan-1.1-11, DelayedArray-0.24.0, DelayedMatrixStats-1.20.0, dqrng-0.3.0, Giotto-Suite-3.0.1, IRanges-2.32.0, limma-3.54.0, Matrix-1.5-3, MatrixGenerics-1.10.0, RcppAnnoy-0.0.20, rsvd-1.0.5, S4Vectors-0.36.1, ScaledMatrix-1.6.0, sitmo-2.0.2, smfishHmrf-0.1, sparseMatrixStats-1.10.0, uwot-0.1.11 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GitPython.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GitPython.md index b98e9265b2c4..7bab4991df17 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GitPython.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GitPython.md @@ -6,6 +6,10 @@ hide: GitPython ========= + +GitPython is a python library used to interact with Git repositories + +https://gitpython.readthedocs.org # Available modules @@ -17,7 +21,7 @@ To start using GitPython, load one of these modules using a `module load` comman module load GitPython/3.1.40-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,46 @@ module load GitPython/3.1.40-GCCcore-12.3.0 |GitPython/3.1.14-GCCcore-10.2.0|-|x|x|x|x|x| |GitPython/3.1.9-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| |GitPython/3.1.0-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| + + +### GitPython/3.1.40-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +gitdb-4.0.11, GitPython-3.1.40, smmap-5.0.1 + +### GitPython/3.1.31-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +gitdb-4.0.10, GitPython-3.1.31, smmap-5.0.0 + +### GitPython/3.1.27-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +gitdb-4.0.9, GitPython-3.1.27, smmap-5.0.0 + +### GitPython/3.1.24-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +gitdb-4.0.9, GitPython-3.1.24, smmap-5.0.0 + +### GitPython/3.1.14-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +gitdb-4.0.7, GitPython-3.1.14, smmap-4.0.0 + +### GitPython/3.1.9-GCCcore-9.3.0-Python-3.8.2 + +This is a list of extensions included in the module: + +gitdb-4.0.5, GitPython-3.1.9, smmap-3.0.4 + +### GitPython/3.1.0-GCCcore-8.3.0-Python-3.7.4 + +This is a list of extensions included in the module: + +gitdb-4.0.2, GitPython-3.1.0, smmap-3.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GlimmerHMM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GlimmerHMM.md index 186f60e13227..4fd9f92c6c2c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GlimmerHMM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GlimmerHMM.md @@ -6,6 +6,10 @@ hide: GlimmerHMM ========== + +GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model. Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models. + +https://ccb.jhu.edu/software/glimmerhmm # Available modules @@ -17,7 +21,7 @@ To start using GlimmerHMM, load one of these modules using a `module load` comma module load GlimmerHMM/3.0.4c-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GlobalArrays.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GlobalArrays.md index 77ea28f684e3..ed48e005ab75 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GlobalArrays.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GlobalArrays.md @@ -6,6 +6,10 @@ hide: GlobalArrays ============ + +Global Arrays (GA) is a Partitioned Global Address Space (PGAS) programming model + +https://hpc.pnl.gov/globalarrays # Available modules @@ -17,7 +21,7 @@ To start using GlobalArrays, load one of these modules using a `module load` com module load GlobalArrays/5.8-iomkl-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GnuTLS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GnuTLS.md index ac80de6c771f..9d7e2a1ca9ef 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GnuTLS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GnuTLS.md @@ -6,6 +6,10 @@ hide: GnuTLS ====== + +GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability. + +https://www.gnutls.org # Available modules @@ -17,7 +21,7 @@ To start using GnuTLS, load one of these modules using a `module load` command l module load GnuTLS/3.7.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Go.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Go.md index dc64d2968c12..d220bb542d64 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Go.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Go.md @@ -6,6 +6,10 @@ hide: Go == + +Go is an open source programming language that makes it easy to build simple, reliable, and efficient software. + +https://www.golang.org # Available modules @@ -17,7 +21,7 @@ To start using Go, load one of these modules using a `module load` command like: module load Go/1.21.6 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gradle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gradle.md index 2dca55b409e6..0f7d655dd0ee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Gradle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gradle.md @@ -6,6 +6,10 @@ hide: Gradle ====== + +Complete Gradle install.From mobile apps to microservices, from small startups to big enterprises,Gradle helps teams build, automate and deliver better software, faster. + +https://gradle.org # Available modules @@ -17,7 +21,7 @@ To start using Gradle, load one of these modules using a `module load` command l module load Gradle/8.6-Java-17 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap.md index 3690d42cece1..41e2524fbdc6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap.md @@ -6,6 +6,10 @@ hide: GraphMap ======== + +A highly sensitive and accurate mapper for long, error-prone reads + +https://github.com/isovic/graphmap # Available modules @@ -17,7 +21,7 @@ To start using GraphMap, load one of these modules using a `module load` command module load GraphMap/0.5.2-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap2.md index 32d43f35ca01..0009c430312c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap2.md @@ -6,6 +6,10 @@ hide: GraphMap2 ========= + +A highly sensitive and accurate mapper for long, error-prone reads + +https://github.com/lbcb-sci/graphmap2 # Available modules @@ -17,7 +21,7 @@ To start using GraphMap2, load one of these modules using a `module load` comman module load GraphMap2/0.6.4-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Graphene.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Graphene.md index 9eb87d6cbdaa..9a8aa4893cde 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Graphene.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Graphene.md @@ -6,6 +6,10 @@ hide: Graphene ======== + +Graphene is a thin layer of types for graphic libraries + +https://ebassi.github.io/graphene/ # Available modules @@ -17,7 +21,7 @@ To start using Graphene, load one of these modules using a `module load` command module load Graphene/1.10.8-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphicsMagick.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphicsMagick.md index b7a3eff299cd..228c5e350146 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphicsMagick.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphicsMagick.md @@ -6,6 +6,10 @@ hide: GraphicsMagick ============== + +GraphicsMagick is the swiss army knife of image processing. + +https://www.graphicsmagick.org/ # Available modules @@ -17,7 +21,7 @@ To start using GraphicsMagick, load one of these modules using a `module load` c module load GraphicsMagick/1.3.34-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Graphviz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Graphviz.md index 75b6f24883d1..b1e89811955c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Graphviz.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Graphviz.md @@ -6,6 +6,10 @@ hide: Graphviz ======== + +Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. + +https://www.graphviz.org/ # Available modules @@ -17,7 +21,7 @@ To start using Graphviz, load one of these modules using a `module load` command module load Graphviz/8.1.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Greenlet.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Greenlet.md index 72670ed45b5f..2bde36a80244 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Greenlet.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Greenlet.md @@ -6,6 +6,10 @@ hide: Greenlet ======== + +The greenlet package is a spin-off of Stackless, a version of CPython thatsupports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a singleor a few OS-level threads) and are synchronized with data exchanges on "channels".A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicitscheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs. + +https://github.com/python-greenlet/greenlet # Available modules @@ -17,7 +21,7 @@ To start using Greenlet, load one of these modules using a `module load` command module load Greenlet/2.0.2-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GroIMP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GroIMP.md index c03414b3f77f..34017e356be1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GroIMP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GroIMP.md @@ -6,6 +6,10 @@ hide: GroIMP ====== + +GroIMP (Growth Grammar-related Interactive Modelling Platform) is a 3D-modelling platform. + +http://www.grogra.de/software/groimp # Available modules @@ -17,7 +21,7 @@ To start using GroIMP, load one of these modules using a `module load` command l module load GroIMP/1.5-Java-1.8 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Guile.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Guile.md index 66f477c0b710..82c2a87d9fce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Guile.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Guile.md @@ -6,6 +6,10 @@ hide: Guile ===== + +Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts. + +https://www.gnu.org/software/guile/ # Available modules @@ -17,7 +21,7 @@ To start using Guile, load one of these modules using a `module load` command li module load Guile/3.0.7-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Guppy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Guppy.md index b30accb9b7bf..2ac8255667d5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Guppy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Guppy.md @@ -6,6 +6,10 @@ hide: Guppy ===== + +Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies' basecalling algorithms, and several bioinformatic post-processing features. + +https://nanoporetech.com/nanopore-sequencing-data-analysis # Available modules @@ -17,7 +21,7 @@ To start using Guppy, load one of these modules using a `module load` command li module load Guppy/6.5.7-gpu ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gurobi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gurobi.md index 58cebb9a2178..22338e92b4c0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Gurobi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gurobi.md @@ -6,6 +6,10 @@ hide: Gurobi ====== + +The Gurobi Optimizer is a state-of-the-art solver for mathematical programming.The solvers in the Gurobi Optimizer were designed from the ground up to exploit modern architectures and multi-core processors, using the most advanced implementations of the latest algorithms. + +https://www.gurobi.com # Available modules @@ -17,7 +21,7 @@ To start using Gurobi, load one of these modules using a `module load` command l module load Gurobi/11.0.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,10 @@ module load Gurobi/11.0.0-GCCcore-12.3.0 |Gurobi/9.5.0-GCCcore-11.2.0|x|x|x|x|x|x| |Gurobi/9.1.1-GCCcore-10.2.0|-|x|x|x|x|x| |Gurobi/9.1.0|-|x|x|-|x|-| + + +### Gurobi/11.0.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +gurobipy-11.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HAL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HAL.md index 9935d5739fcf..efc29c86988a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HAL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HAL.md @@ -6,6 +6,10 @@ hide: HAL === + +HAL is a structure to efficiently store and index multiple genome alignmentsand ancestral reconstructions. HAL is a graph-based representation whichprovides several advantages over matrix/block-based formats such as MAF, such asimproved scalability and the ability to perform queries with respect to anarbitrary reference or subtree.This package includes the HAL API and several analysis and conversion toolswhich are described below. HAL files are presently stored in either HDF5 or mmapformat, but we note that the tools and most of the API are format-independent,so other databases could be implemented in the future. + +https://github.com/ComparativeGenomicsToolkit/hal # Available modules @@ -17,8 +21,15 @@ To start using HAL, load one of these modules using a `module load` command like module load HAL/2.1-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |HAL/2.1-foss-2020b|-|x|x|x|x|x| + + +### HAL/2.1-foss-2020b + +This is a list of extensions included in the module: + +addict-2.2.1, blessed-1.18.1, dill-0.3.4, docker-4.3.1, enlighten-1.10.1, newick-1.3.0, prefixed-0.3.2, toil-5.3.0, websocket-client-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HDBSCAN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HDBSCAN.md index 0c80640f7452..b2f8b42bc349 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HDBSCAN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HDBSCAN.md @@ -6,6 +6,10 @@ hide: HDBSCAN ======= + +The hdbscan library is a suite of tools to use unsupervised learning to find clusters, or dense regions, of a dataset. The primary algorithm is HDBSCAN* as proposed by Campello, Moulavi, and Sander. The library provides a high performance implementation of this algorithm, along with tools for analysing the resulting clustering. + +http://hdbscan.readthedocs.io/en/latest/ # Available modules @@ -17,8 +21,15 @@ To start using HDBSCAN, load one of these modules using a `module load` command module load HDBSCAN/0.8.29-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |HDBSCAN/0.8.29-foss-2022a|x|x|x|x|x|x| + + +### HDBSCAN/0.8.29-foss-2022a + +This is a list of extensions included in the module: + +HDBSCAN-0.8.29 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HDDM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HDDM.md index 5beacaa253b9..4ba4973c43fd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HDDM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HDDM.md @@ -6,6 +6,10 @@ hide: HDDM ==== + +HDDM is a Python toolbox for hierarchical Bayesian parameter estimation of the Drift Diffusion Model (via PyMC). + +http://ski.clps.brown.edu/hddm_docs # Available modules @@ -17,9 +21,22 @@ To start using HDDM, load one of these modules using a `module load` command lik module load HDDM/0.7.5-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |HDDM/0.7.5-intel-2019b-Python-3.7.4|-|x|-|-|-|x| |HDDM/0.7.5-intel-2019b-Python-2.7.16|-|x|-|-|-|x| + + +### HDDM/0.7.5-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +HDDM-0.7.5, kabuki-0.6.2, patsy-0.5.1, pymc-2.3.7 + +### HDDM/0.7.5-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +HDDM-0.7.5, kabuki-0.6.2, patsy-0.5.1, pymc-2.3.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HDF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HDF.md index d58d7a69764c..541369187a82 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HDF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HDF.md @@ -6,6 +6,10 @@ hide: HDF === + +HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. + +https://www.hdfgroup.org/products/hdf4/ # Available modules @@ -17,7 +21,7 @@ To start using HDF, load one of these modules using a `module load` command like module load HDF/4.2.16-2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HDF5.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HDF5.md index 4f745d0f34b6..c4c3abbacb30 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HDF5.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HDF5.md @@ -6,6 +6,10 @@ hide: HDF5 ==== + +HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. + +https://portal.hdfgroup.org/display/support # Available modules @@ -17,7 +21,7 @@ To start using HDF5, load one of these modules using a `module load` command lik module load HDF5/1.14.0-gompi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HH-suite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HH-suite.md index 50ff391cfa86..a060699c214d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HH-suite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HH-suite.md @@ -6,6 +6,10 @@ hide: HH-suite ======== + +The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). + +https://github.com/soedinglab/hh-suite # Available modules @@ -17,7 +21,7 @@ To start using HH-suite, load one of these modules using a `module load` command module load HH-suite/3.3.0-gompic-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HISAT2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HISAT2.md index fbbd329f2972..062dd8ad0c80 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HISAT2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HISAT2.md @@ -6,6 +6,10 @@ hide: HISAT2 ====== + +HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome). + +https://daehwankimlab.github.io/hisat2 # Available modules @@ -17,7 +21,7 @@ To start using HISAT2, load one of these modules using a `module load` command l module load HISAT2/2.2.1-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER.md index d8bee12e9242..9bdcb86b51f6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER.md @@ -6,6 +6,10 @@ hide: HMMER ===== + +HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST. + +http://hmmer.org/ # Available modules @@ -17,7 +21,7 @@ To start using HMMER, load one of these modules using a `module load` command li module load HMMER/3.4-gompi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER2.md index 4fc910443be6..b4a75a1b7f3e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER2.md @@ -6,6 +6,10 @@ hide: HMMER2 ====== + +HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. + +http://hmmer.org # Available modules @@ -17,7 +21,7 @@ To start using HMMER2, load one of these modules using a `module load` command l module load HMMER2/2.3.2-GCC-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HPL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HPL.md index fbc196baeabf..b375f022df98 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HPL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HPL.md @@ -6,6 +6,10 @@ hide: HPL === + +HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. + +http://www.netlib.org/benchmark/hpl/ # Available modules @@ -17,7 +21,7 @@ To start using HPL, load one of these modules using a `module load` command like module load HPL/2.3-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSeq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSeq.md index 7a6f1b36a8cb..353a5c7f32e1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSeq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSeq.md @@ -6,6 +6,10 @@ hide: HTSeq ===== + +HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments. + +https://github.com/simon-anders/htseq # Available modules @@ -17,9 +21,16 @@ To start using HTSeq, load one of these modules using a `module load` command li module load HTSeq/2.0.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |HTSeq/2.0.2-foss-2022a|x|x|x|x|x|x| |HTSeq/0.11.3-foss-2021b|x|x|x|-|x|x| + + +### HTSeq/2.0.2-foss-2022a + +This is a list of extensions included in the module: + +HTSeq-2.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSlib.md index b3b2fc6a7d56..b9499716fa6b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSlib.md @@ -6,6 +6,10 @@ hide: HTSlib ====== + +A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix + +https://www.htslib.org/ # Available modules @@ -17,7 +21,7 @@ To start using HTSlib, load one of these modules using a `module load` command l module load HTSlib/1.18-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSplotter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSplotter.md index 8889f7526b29..ff2f4ffac339 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSplotter.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSplotter.md @@ -6,6 +6,10 @@ hide: HTSplotter ========== + +HTSplotter allows an end-to-end data processing and analysis of chemical and genetic in vitroperturbation screens. + +https://github.com/CBIGR/HTSplotter # Available modules @@ -17,9 +21,22 @@ To start using HTSplotter, load one of these modules using a `module load` comma module load HTSplotter/2.11-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |HTSplotter/2.11-foss-2022b|x|x|x|x|x|x| |HTSplotter/0.15-foss-2022a|x|x|x|x|x|x| + + +### HTSplotter/2.11-foss-2022b + +This is a list of extensions included in the module: + +HTSplotter-2.11, minio-7.1.13, pypdf-3.6.0, PyPDF2-3.0.1, PyPDF3-1.0.6 + +### HTSplotter/0.15-foss-2022a + +This is a list of extensions included in the module: + +HTSplotter-0.15, minio-7.1.13, pypdf-3.4.1, PyPDF2-3.0.1, PyPDF3-1.0.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Hadoop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Hadoop.md index 25b259a4344a..654278d99133 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Hadoop.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Hadoop.md @@ -6,6 +6,10 @@ hide: Hadoop ====== + +Hadoop MapReduce by Cloudera + +https://archive.cloudera.com/cdh5/cdh/5/ # Available modules @@ -17,7 +21,7 @@ To start using Hadoop, load one of these modules using a `module load` command l module load Hadoop/2.10.0-GCCcore-10.2.0-native-Java-1.8 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HarfBuzz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HarfBuzz.md index c7559ecc8622..556037b55930 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HarfBuzz.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HarfBuzz.md @@ -6,6 +6,10 @@ hide: HarfBuzz ======== + +HarfBuzz is an OpenType text shaping engine. + +https://www.freedesktop.org/wiki/Software/HarfBuzz # Available modules @@ -17,7 +21,7 @@ To start using HarfBuzz, load one of these modules using a `module load` command module load HarfBuzz/5.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HiCExplorer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HiCExplorer.md index ec6beafbdf23..0064c86a665e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HiCExplorer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HiCExplorer.md @@ -6,6 +6,10 @@ hide: HiCExplorer =========== + +HiCexplorer addresses the common tasks of Hi-C analysis from processing to visualization. + +http://hicexplorer.readthedocs.org/ # Available modules @@ -17,8 +21,15 @@ To start using HiCExplorer, load one of these modules using a `module load` comm module load HiCExplorer/3.7.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |HiCExplorer/3.7.2-foss-2022a|x|x|x|x|x|x| + + +### HiCExplorer/3.7.2-foss-2022a + +This is a list of extensions included in the module: + +cleanlab-2.2.0, fit-nbinom-1.1, hic2cool-0.8.3, HiCExplorer-3.7.2, intervaltree-3.1.0, termcolor-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HiCMatrix.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HiCMatrix.md index a7c7a47cef12..2d385fd22907 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HiCMatrix.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HiCMatrix.md @@ -6,6 +6,10 @@ hide: HiCMatrix ========= + +This library implements the central class of HiCExplorer to manage Hi-C interaction matrices. + +https://github.com/deeptools/HiCMatrix # Available modules @@ -17,8 +21,15 @@ To start using HiCMatrix, load one of these modules using a `module load` comman module load HiCMatrix/17-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |HiCMatrix/17-foss-2022a|x|x|x|x|x|x| + + +### HiCMatrix/17-foss-2022a + +This is a list of extensions included in the module: + +HiCMatrix-17, intervaltree-3.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HighFive.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HighFive.md index 25496e8c225f..e60dbdf751db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HighFive.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HighFive.md @@ -6,6 +6,10 @@ hide: HighFive ======== + +HighFive is a modern header-only C++11 friendly interface for libhdf5. + +https://github.com/BlueBrain/HighFive # Available modules @@ -17,7 +21,7 @@ To start using HighFive, load one of these modules using a `module load` command module load HighFive/2.7.1-gompi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Highway.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Highway.md index 1eafd492f343..d5bb58da0902 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Highway.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Highway.md @@ -6,6 +6,10 @@ hide: Highway ======= + +Highway is a C++ library for SIMD (Single Instruction, Multiple Data), i.e. applying the sameoperation to 'lanes'. + +https://github.com/google/highway # Available modules @@ -17,7 +21,7 @@ To start using Highway, load one of these modules using a `module load` command module load Highway/1.0.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Horovod.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Horovod.md index 1e057ea71773..ece3c342c048 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Horovod.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Horovod.md @@ -6,6 +6,10 @@ hide: Horovod ======= + +Horovod is a distributed training framework for TensorFlow. + +https://github.com/uber/horovod # Available modules @@ -17,7 +21,7 @@ To start using Horovod, load one of these modules using a `module load` command module load Horovod/0.23.0-fosscuda-2020b-TensorFlow-2.5.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,34 @@ module load Horovod/0.23.0-fosscuda-2020b-TensorFlow-2.5.0 |Horovod/0.22.0-fosscuda-2020b-PyTorch-1.8.1|x|-|-|-|-|-| |Horovod/0.21.3-fosscuda-2020b-PyTorch-1.7.1|x|-|-|-|x|-| |Horovod/0.21.1-fosscuda-2020b-TensorFlow-2.4.1|x|-|-|-|x|-| + + +### Horovod/0.23.0-fosscuda-2020b-TensorFlow-2.5.0 + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, horovod-0.23.0 + +### Horovod/0.23.0-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0 + +This is a list of extensions included in the module: + +cloudpickle-2.0.0, horovod-0.23.0 + +### Horovod/0.22.0-fosscuda-2020b-PyTorch-1.8.1 + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, horovod-0.22.0 + +### Horovod/0.21.3-fosscuda-2020b-PyTorch-1.7.1 + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, horovod-0.21.3 + +### Horovod/0.21.1-fosscuda-2020b-TensorFlow-2.4.1 + +This is a list of extensions included in the module: + +cloudpickle-1.5.0, horovod-0.21.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HyPo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HyPo.md index 801522439326..9df1e1ae3413 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HyPo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HyPo.md @@ -6,6 +6,10 @@ hide: HyPo ==== + +HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies + +https://github.com/kensung-lab/hypo # Available modules @@ -17,7 +21,7 @@ To start using HyPo, load one of these modules using a `module load` command lik module load HyPo/1.0.3-GCC-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Hybpiper.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Hybpiper.md index 38a6285cd11c..42f43a09e246 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Hybpiper.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Hybpiper.md @@ -6,6 +6,10 @@ hide: Hybpiper ======== + +HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts/modules that wrap and connect bioinformatics tools in order to extract target sequences from high-throughput DNA sequencing reads. + +https://github.com/mossmatters/HybPiper # Available modules @@ -17,8 +21,15 @@ To start using Hybpiper, load one of these modules using a `module load` command module load Hybpiper/2.1.6-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Hybpiper/2.1.6-foss-2022b|x|x|x|x|x|x| + + +### Hybpiper/2.1.6-foss-2022b + +This is a list of extensions included in the module: + +Hybpiper-2.1.6, Pebble-5.0.3, progressbar2-4.2.0, python-utils-3.7.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Hydra.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Hydra.md index 954c6aa50383..8a3f3ace9ba9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Hydra.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Hydra.md @@ -6,6 +6,10 @@ hide: Hydra ===== + +Hydra is an open-source Python framework that simplifies the development ofresearch and other complex applications. The key feature is the ability todynamically create a hierarchical configuration by composition and override itthrough config files and the command line. The name Hydra comes from itsability to run multiple similar jobs - much like a Hydra with multiple heads. + +https://hydra.cc/ # Available modules @@ -17,8 +21,15 @@ To start using Hydra, load one of these modules using a `module load` command li module load Hydra/1.1.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Hydra/1.1.1-GCCcore-10.3.0|x|x|x|-|x|x| + + +### Hydra/1.1.1-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +antlr4-python3-runtime-4.8, hydra-1.1.1, omegaconf-2.1.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Hyperopt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Hyperopt.md index 5c5ef4faab4f..0215ab345cbe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Hyperopt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Hyperopt.md @@ -6,6 +6,10 @@ hide: Hyperopt ======== + +hyperopt is a Python library for optimizing over awkward search spaces with real-valued, discrete, and conditional dimensions. + +http://hyperopt.github.io/hyperopt/ # Available modules @@ -17,9 +21,22 @@ To start using Hyperopt, load one of these modules using a `module load` command module load Hyperopt/0.2.7-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Hyperopt/0.2.7-foss-2022a|x|x|x|x|x|x| |Hyperopt/0.2.7-foss-2021a|x|x|x|-|x|x| + + +### Hyperopt/0.2.7-foss-2022a + +This is a list of extensions included in the module: + +cloudpickle-2.2.1, hyperopt-0.2.7, py4j-0.10.9.7 + +### Hyperopt/0.2.7-foss-2021a + +This is a list of extensions included in the module: + +cloudpickle-2.0.0, hyperopt-0.2.7, py4j-0.10.9.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Hypre.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Hypre.md index 8fc93e9312fd..f671b5a71e84 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Hypre.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Hypre.md @@ -6,6 +6,10 @@ hide: Hypre ===== + +Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences. + +https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods # Available modules @@ -17,7 +21,7 @@ To start using Hypre, load one of these modules using a `module load` command li module load Hypre/2.25.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ICU.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ICU.md index 29ad6621b47b..6abef3cbb419 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ICU.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ICU.md @@ -6,6 +6,10 @@ hide: ICU === + +ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. + +https://icu-project.org/ # Available modules @@ -17,7 +21,7 @@ To start using ICU, load one of these modules using a `module load` command like module load ICU/73.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IDBA-UD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IDBA-UD.md index 40c975225b79..81bd546fdab7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IDBA-UD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IDBA-UD.md @@ -6,6 +6,10 @@ hide: IDBA-UD ======= + +IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short ReadsSequencing data with Highly Uneven Sequencing Depth. It is an extension of IDBA algorithm.IDBA-UD also iterates from small k to a large k. In each iteration, short and low-depthcontigs are removed iteratively with cutoff threshold from low to high to reduce the errorsin low-depth and high-depth regions. Paired-end reads are aligned to contigs and assembledlocally to generate some missing k-mers in low-depth regions. With these technologies, IDBA-UDcan iterate k value of de Bruijn graph to a very large value with less gaps and less branchesto form long contigs in both low-depth and high-depth regions. + +https://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/ # Available modules @@ -17,7 +21,7 @@ To start using IDBA-UD, load one of these modules using a `module load` command module load IDBA-UD/1.1.3-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IGMPlot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IGMPlot.md index 1f54b9d3770a..684ab84f4923 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IGMPlot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IGMPlot.md @@ -6,6 +6,10 @@ hide: IGMPlot ======= + +IGMPlot is a free open-source program developed to identify molecular interactions and prepare data to build 2D and 3D representations of them in the molecular environment. + +http://igmplot.univ-reims.fr # Available modules @@ -17,7 +21,7 @@ To start using IGMPlot, load one of these modules using a `module load` command module load IGMPlot/2.4.2-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IGV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IGV.md index 6e9b0cd834a8..e0ac973ffdaf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IGV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IGV.md @@ -6,6 +6,10 @@ hide: IGV === + +This package contains command line utilities for preprocessing, computing feature count density (coverage), sorting, and indexing data files. + +https://www.broadinstitute.org/software/igv/ # Available modules @@ -17,7 +21,7 @@ To start using IGV, load one of these modules using a `module load` command like module load IGV/2.9.4-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IOR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IOR.md index cad01cbf10f7..a003f639ee93 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IOR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IOR.md @@ -6,6 +6,10 @@ hide: IOR === + +The IOR software is used for benchmarking parallel file systems using POSIX, MPIIO, or HDF5 interfaces. + +https://github.com/IOR-LANL/ior # Available modules @@ -17,7 +21,7 @@ To start using IOR, load one of these modules using a `module load` command like module load IOR/3.2.1-gompi-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IPython.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IPython.md index dcee236dffd7..690a6c3699a7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IPython.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IPython.md @@ -6,6 +6,10 @@ hide: IPython ======= + +IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing. + +https://ipython.org/index.html # Available modules @@ -17,7 +21,7 @@ To start using IPython, load one of these modules using a `module load` command module load IPython/8.14.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -31,3 +35,64 @@ module load IPython/8.14.0-GCCcore-12.3.0 |IPython/7.15.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| |IPython/7.9.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |IPython/7.9.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### IPython/8.14.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +%(namelower)s-%(version)s, asttokens-2.2.1, backcall-0.2.0, executing-1.2.0, jedi-0.19.0, matplotlib-inline-0.1.6, parso-0.8.3, pickleshare-0.7.5, prompt_toolkit-3.0.39, pure_eval-0.2.2, stack_data-0.6.2, traitlets-5.9.0 + +### IPython/8.14.0-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +asttokens-2.2.1, backcall-0.2.0, executing-1.2.0, ipython-8.14.0, jedi-0.18.2, matplotlib-inline-0.1.6, parso-0.8.3, pickleshare-0.7.5, prompt_toolkit-3.0.39, pure_eval-0.2.2, stack_data-0.6.2, traitlets-5.9.0 + +### IPython/8.5.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +argon2-cffi-20.1.0, asttokens-2.0.8, async_generator-1.10, backcall-0.2.0, bleach-5.0.1, debugpy-1.4.1, defusedxml-0.7.1, deprecation-2.1.0, entrypoints-0.4, executing-1.0.0, fastjsonschema-2.16.1, ipykernel-6.13.0, ipython-8.5.0, ipython_genutils-0.2.0, ipywidgets-7.6.3, jedi-0.18.1, jupyter_client-7.3.1, jupyter_core-4.10.0, jupyter_packaging-0.12.0, jupyterlab_pygments-0.1.2, jupyterlab_widgets-3.0.3, matplotlib-inline-0.1.2, mistune-0.8.1, nbclient-0.6.3, nbconvert-6.5.3, nbformat-5.4.0, nest_asyncio-1.5.5, notebook-6.4.0, pandocfilters-1.5.0, parso-0.8.3, pickleshare-0.7.5, prometheus_client-0.11.0, prompt_toolkit-3.0.31, pure_eval-0.2.2, pyzmq-23.2.1, Send2Trash-1.8.0, stack_data-0.5.0, terminado-0.13.0, testpath-0.6.0, tinycss2-1.1.1, tornado-6.2, traitlets-5.2.0, widgetsnbextension-3.5.1 + +### IPython/7.26.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +argon2-cffi-20.1.0, async_generator-1.10, backcall-0.2.0, bleach-4.0.0, debugpy-1.4.1, defusedxml-0.7.1, deprecation-2.1.0, entrypoints-0.3, ipykernel-6.0.3, ipython-7.26.0, ipython_genutils-0.2.0, ipywidgets-7.6.3, jedi-0.18.0, jupyter_client-6.1.12, jupyter_core-4.7.1, jupyter_packaging-0.10.4, jupyterlab_pygments-0.1.2, jupyterlab_widgets-1.0.0, matplotlib-inline-0.1.2, mistune-0.8.4, nbclient-0.5.3, nbconvert-6.4.0, nbformat-5.1.3, nest_asyncio-1.5.1, notebook-6.4.0, pandocfilters-1.4.3, parso-0.8.2, pickleshare-0.7.5, prometheus_client-0.11.0, prompt_toolkit-3.0.19, pyzmq-22.2.1, Send2Trash-1.8.0, terminado-0.10.1, testpath-0.5.0, tornado-6.1, traitlets-5.0.5, widgetsnbextension-3.5.1 + +### IPython/7.25.0-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +argon2-cffi-20.1.0, async_generator-1.10, backcall-0.2.0, bleach-3.3.0, debugpy-1.3.0, defusedxml-0.7.1, deprecation-2.1.0, entrypoints-0.3, ipykernel-6.0.0, ipython-7.25.0, ipython_genutils-0.2.0, ipywidgets-7.6.3, jedi-0.18.0, jupyter_client-6.1.12, jupyter_core-4.7.1, jupyter_packaging-0.10.3, jupyterlab_pygments-0.1.2, jupyterlab_widgets-1.0.0, matplotlib-inline-0.1.2, mistune-0.8.4, nbclient-0.5.3, nbconvert-6.4.0, nbformat-5.1.3, nest_asyncio-1.5.1, notebook-6.4.0, pandocfilters-1.4.3, parso-0.8.2, pickleshare-0.7.5, prometheus_client-0.11.0, prompt_toolkit-3.0.19, pyzmq-22.1.0, Send2Trash-1.7.1, terminado-0.10.1, testpath-0.5.0, tornado-6.1, traitlets-5.0.5, widgetsnbextension-3.5.1 + +### IPython/7.18.1-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +argon2-cffi-20.1.0, async_generator-1.10, backcall-0.2.0, bleach-3.2.1, defusedxml-0.6.0, entrypoints-0.3, ipykernel-5.3.4, ipython-7.18.1, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.17.2, jupyter_client-6.1.7, jupyter_core-4.6.3, jupyterlab_pygments-0.1.2, mistune-0.8.4, nbclient-0.5.0, nbconvert-6.0.7, nbformat-5.0.7, nest_asyncio-1.4.1, notebook-6.1.4, pandocfilters-1.4.2, parso-0.7.1, pickleshare-0.7.5, prometheus_client-0.8.0, prompt_toolkit-3.0.7, pyzmq-19.0.2, Send2Trash-1.5.0, terminado-0.9.1, testpath-0.4.4, tornado-6.0.4, traitlets-5.0.4, widgetsnbextension-3.5.1 + +### IPython/7.15.0-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +backcall-0.1.0, bleach-3.1.5, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.3.0, ipython-7.15.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.17.0, jsonschema-3.2.0, jupyter_client-6.1.3, jupyter_contrib_core-0.3.3, jupyter_core-4.6.3, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-5.0.6, notebook-6.0.3, pandocfilters-1.4.2, parso-0.7.0, pexpect-4.8.0, pickleshare-0.7.5, prometheus_client-0.8.0, prompt_toolkit-3.0.5, ptyprocess-0.6.0, pyrsistent-0.16.0, pyzmq-19.0.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.4, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.9, webencodings-0.5.1, widgetsnbextension-3.5.1 + +### IPython/7.15.0-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +backcall-0.1.0, bleach-3.1.5, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.3.0, ipython-7.15.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.17.0, jsonschema-3.2.0, jupyter_client-6.1.3, jupyter_contrib_core-0.3.3, jupyter_core-4.6.3, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-5.0.6, notebook-6.0.3, pandocfilters-1.4.2, parso-0.7.0, pexpect-4.8.0, pickleshare-0.7.5, prometheus_client-0.8.0, prompt_toolkit-3.0.5, ptyprocess-0.6.0, pyrsistent-0.16.0, pyzmq-19.0.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.4, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.9, webencodings-0.5.1, widgetsnbextension-3.5.1 + +### IPython/7.9.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +backcall-0.1.0, bleach-3.1.0, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.1.3, ipython-7.9.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.15.1, jsonschema-3.1.1, jupyter_client-5.3.4, jupyter_contrib_core-0.3.3, jupyter_core-4.6.1, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-4.4.0, notebook-6.0.2, pandocfilters-1.4.2, parso-0.5.1, pexpect-4.7.0, pickleshare-0.7.5, prometheus_client-0.7.1, prompt_toolkit-2.0.10, ptyprocess-0.6.0, pyrsistent-0.15.5, pyzmq-18.1.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.3, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.7, webencodings-0.5.1, widgetsnbextension-3.5.1 + +### IPython/7.9.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +backcall-0.1.0, bleach-3.1.0, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.1.3, ipython-7.9.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.15.1, jsonschema-3.1.1, jupyter_client-5.3.4, jupyter_contrib_core-0.3.3, jupyter_core-4.6.1, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-4.4.0, notebook-6.0.2, pandocfilters-1.4.2, parso-0.5.1, pexpect-4.7.0, pickleshare-0.7.5, prometheus_client-0.7.1, prompt_toolkit-2.0.10, ptyprocess-0.6.0, pyrsistent-0.15.5, pyzmq-18.1.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.3, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.7, webencodings-0.5.1, widgetsnbextension-3.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md index 508dcbd0d615..fa00497a38f1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md @@ -6,6 +6,10 @@ hide: IQ-TREE ======= + +Efficient phylogenomic software by maximum likelihood + +http://www.iqtree.org/ # Available modules @@ -17,7 +21,7 @@ To start using IQ-TREE, load one of these modules using a `module load` command module load IQ-TREE/2.2.2.6-gompi-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IRkernel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IRkernel.md index 9ffa7355d6b9..292413d82025 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IRkernel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IRkernel.md @@ -6,6 +6,10 @@ hide: IRkernel ======== + +The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network. + +https://irkernel.github.io # Available modules @@ -17,9 +21,22 @@ To start using IRkernel, load one of these modules using a `module load` command module load IRkernel/1.2-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |IRkernel/1.2-foss-2021a-R-4.1.0|-|x|x|-|x|x| |IRkernel/1.1-foss-2019b-R-3.6.2-Python-3.7.4|-|x|x|-|x|x| + + +### IRkernel/1.2-foss-2021a-R-4.1.0 + +This is a list of extensions included in the module: + +IRdisplay-1.0, IRkernel-1.2, pbdZMQ-0.3-5, repr-1.1.3 + +### IRkernel/1.1-foss-2019b-R-3.6.2-Python-3.7.4 + +This is a list of extensions included in the module: + +IRdisplay-0.7.0, IRkernel-1.1, pbdZMQ-0.3-3, repr-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ISA-L.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ISA-L.md index c59ff567c7cc..ca5f46149773 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ISA-L.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ISA-L.md @@ -6,6 +6,10 @@ hide: ISA-L ===== + +Intelligent Storage Acceleration Library + +https://github.com/intel/isa-l # Available modules @@ -17,7 +21,7 @@ To start using ISA-L, load one of these modules using a `module load` command li module load ISA-L/2.30.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ITK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ITK.md index a7b3eeeb0a5d..f1c118b7465f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ITK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ITK.md @@ -6,6 +6,10 @@ hide: ITK === + +Insight Segmentation and Registration Toolkit (ITK) provides an extensive suite of software tools for registering and segmenting multidimensional imaging data. + +https://itk.org # Available modules @@ -17,7 +21,7 @@ To start using ITK, load one of these modules using a `module load` command like module load ITK/5.2.1-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ImageMagick.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ImageMagick.md index b4a5f6fa6365..1c1190a9ad7f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ImageMagick.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ImageMagick.md @@ -6,6 +6,10 @@ hide: ImageMagick =========== + +ImageMagick is a software suite to create, edit, compose, or convert bitmap images + +https://www.imagemagick.org/ # Available modules @@ -17,7 +21,7 @@ To start using ImageMagick, load one of these modules using a `module load` comm module load ImageMagick/7.1.1-15-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Imath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Imath.md index 6ecbfa461b71..d8613281a2ae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Imath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Imath.md @@ -6,6 +6,10 @@ hide: Imath ===== + +Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics + +https://imath.readthedocs.io/en/latest/ # Available modules @@ -17,7 +21,7 @@ To start using Imath, load one of these modules using a `module load` command li module load Imath/3.1.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Inferelator.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Inferelator.md index 080ba7797054..ed35113215fa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Inferelator.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Inferelator.md @@ -6,6 +6,10 @@ hide: Inferelator =========== + +Inferelator 3.0 is a package for gene regulatory network inference that is based on regularized regression. + +https://github.com/flatironinstitute/inferelator # Available modules @@ -17,8 +21,15 @@ To start using Inferelator, load one of these modules using a `module load` comm module load Inferelator/0.6.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Inferelator/0.6.1-foss-2022a|x|x|x|x|x|x| + + +### Inferelator/0.6.1-foss-2022a + +This is a list of extensions included in the module: + +anndata-0.8.0, inferelator-0.6.1, natsort-8.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Infernal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Infernal.md index 7b921cae29a3..0bd051daa595 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Infernal.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Infernal.md @@ -6,6 +6,10 @@ hide: Infernal ======== + +Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. + +http://eddylab.org/infernal/ # Available modules @@ -17,7 +21,7 @@ To start using Infernal, load one of these modules using a `module load` command module load Infernal/1.1.4-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan.md index deba6ae4e1cb..437fdf49f896 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan.md @@ -6,6 +6,10 @@ hide: InterProScan ============ + +InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines different protein signature recognition methods into one resource. + +https://www.ebi.ac.uk/interpro/ # Available modules @@ -17,7 +21,7 @@ To start using InterProScan, load one of these modules using a `module load` com module load InterProScan/5.62-94.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IonQuant.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IonQuant.md index 3b44ccc0de4e..2801d8ee0258 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IonQuant.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IonQuant.md @@ -6,6 +6,10 @@ hide: IonQuant ======== + +IonQuant is a fast and comprehensive tool for MS1 precursor intensity-based quantification for timsTOF PASEF DDA and non-timsTOF (e.g., Orbitrap) data. It enables label-free quantification with false discovery (FDR) controlled match-between-runs (MBR). It can also be used for quantification in labelling-based experiments such as those involving SILAC, dimethyl, or similar labelling strategies. IonQuant is available as part of FragPipe. + +https://ionquant.nesvilab.org/ # Available modules @@ -17,7 +21,7 @@ To start using IonQuant, load one of these modules using a `module load` command module load IonQuant/1.10.12-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IsoQuant.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IsoQuant.md index 35cb59b52b5a..11b28ffdfd74 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IsoQuant.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IsoQuant.md @@ -6,6 +6,10 @@ hide: IsoQuant ======== + +IsoQuant is a tool for the genome-based analysis of long RNA reads, such as PacBio or Oxford Nanopores. IsoQuant allows to reconstruct and quantify transcript models with high precision and decent recall. If the reference annotation is given, IsoQuant also assigns reads to the annotated isoforms based on their intron and exon structure. IsoQuant further performs annotated gene, isoform, exon and intron quantification. If reads are grouped (e.g. according to cell type), counts are reported according to the provided grouping. + +https://github.com/ablab/IsoQuant # Available modules @@ -17,7 +21,7 @@ To start using IsoQuant, load one of these modules using a `module load` command module load IsoQuant/3.3.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IsoSeq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IsoSeq.md index d3900a4b752b..94f361b26e0e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IsoSeq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IsoSeq.md @@ -6,6 +6,10 @@ hide: IsoSeq ====== + +IsoSeq v3 contains the newest tools to identify transcripts in PacBio single-molecule sequencing data. Starting in SMRT Link v6.0.0, those tools power the IsoSeq GUI-based analysis application. A composable workflow of existing tools and algorithms, combined with a new clustering technique, allows to process the ever-increasing yield of PacBio machines with similar performance to IsoSeq versions 1 and 2. Starting with version 3.4, support for UMI and cell barcode based deduplication has been added. + +https://github.com/PacificBiosciences/ioseq3 # Available modules @@ -17,7 +21,7 @@ To start using IsoSeq, load one of these modules using a `module load` command l module load IsoSeq/4.0.0-linux-x86_64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JAGS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JAGS.md index 368c479c8455..0a3fa6b72c3c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JAGS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JAGS.md @@ -6,6 +6,10 @@ hide: JAGS ==== + +JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation + +http://mcmc-jags.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using JAGS, load one of these modules using a `module load` command lik module load JAGS/4.3.2-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JSON-GLib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JSON-GLib.md index d2cc7fa94d68..bd84359b5b31 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JSON-GLib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JSON-GLib.md @@ -6,6 +6,10 @@ hide: JSON-GLib ========= + +JSON-GLib implements a full JSON parser and generator using GLib and GObject, and integrates JSON with GLib data types. + +https://wiki.gnome.org/Projects/JsonGlib # Available modules @@ -17,7 +21,7 @@ To start using JSON-GLib, load one of these modules using a `module load` comman module load JSON-GLib/1.6.2-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Jansson.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Jansson.md index 681db362d17e..e10387fee4e4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Jansson.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Jansson.md @@ -6,6 +6,10 @@ hide: Jansson ======= + +Jansson is a C library for encoding, decoding and manipulating JSON data. Its main features and design principles are: * Simple and intuitive API and data model * Comprehensive documentation * No dependencies on other libraries * Full Unicode support (UTF-8) * Extensive test suite + +https://www.digip.org/jansson/ # Available modules @@ -17,7 +21,7 @@ To start using Jansson, load one of these modules using a `module load` command module load Jansson/2.13.1-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JasPer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JasPer.md index f9f66440d8a6..68a4d85400da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JasPer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JasPer.md @@ -6,6 +6,10 @@ hide: JasPer ====== + +The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. + +https://www.ece.uvic.ca/~frodo/jasper/ # Available modules @@ -17,7 +21,7 @@ To start using JasPer, load one of these modules using a `module load` command l module load JasPer/4.0.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md index 566a9ea390d9..9f92a952ad10 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md @@ -17,7 +17,7 @@ To start using Java, load one of these modules using a `module load` command lik module load Java/17.0.6 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Jellyfish.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Jellyfish.md index 2bc88bd8819a..a77e5104e5f9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Jellyfish.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Jellyfish.md @@ -6,6 +6,10 @@ hide: Jellyfish ========= + +Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. + +http://www.genome.umd.edu/jellyfish.html # Available modules @@ -17,7 +21,7 @@ To start using Jellyfish, load one of these modules using a `module load` comman module load Jellyfish/2.3.0-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JsonCpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JsonCpp.md index 1978eea1e034..c12b79af4d48 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JsonCpp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JsonCpp.md @@ -6,6 +6,10 @@ hide: JsonCpp ======= + +JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. + +https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html # Available modules @@ -17,7 +21,7 @@ To start using JsonCpp, load one of these modules using a `module load` command module load JsonCpp/1.9.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Judy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Judy.md index 9a24f94b3c0a..5d2cba9907a7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Judy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Judy.md @@ -6,6 +6,10 @@ hide: Judy ==== + +A C library that implements a dynamic array. + +http://judy.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using Judy, load one of these modules using a `module load` command lik module load Judy/1.0.5-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Julia.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Julia.md index d30b0a2d70a1..eade6b3b2dfe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Julia.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Julia.md @@ -6,6 +6,10 @@ hide: Julia ===== + +Julia is a high-level, high-performance dynamic programming language for numerical computing + +https://julialang.org # Available modules @@ -17,7 +21,7 @@ To start using Julia, load one of these modules using a `module load` command li module load Julia/1.9.3-linux-x86_64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterHub.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterHub.md index bf08aee7a5e3..0ee9cb55e80c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterHub.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterHub.md @@ -6,6 +6,10 @@ hide: JupyterHub ========== + +JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs. + +https://jupyter.org # Available modules @@ -17,8 +21,15 @@ To start using JupyterHub, load one of these modules using a `module load` comma module load JupyterHub/4.0.1-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |JupyterHub/4.0.1-GCCcore-12.2.0|x|x|x|x|x|x| + + +### JupyterHub/4.0.1-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +alembic-1.11.1, async_generator-1.10, batchspawner-1.2.0-2a9eda0, certipy-0.1.3, greenlet-2.0.2, jupyter-telemetry-0.1.0, jupyterhub-4.0.1, jupyterhub-jwtauthenticator-v2-2.0.3, jupyterhub-ldapauthenticator-1.3.2, jupyterhub-nativeauthenticator-1.2.0, jupyterhub-simplespawner-0.1, jupyterhub-systemdspawner-1.0.1, ldap3-2.9.1, oauthlib-3.2.2, onetimepass-1.0.1, pamela-1.1.0, PyJWT-2.8.0, pyOpenSSL-23.2.0, ruamel.yaml-0.17.32, ruamel.yaml.clib-0.2.7, SQLAlchemy-2.0.19 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterLab.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterLab.md index 2d51bc817320..b5534801113b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterLab.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterLab.md @@ -6,6 +6,10 @@ hide: JupyterLab ========== + +JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook. + +https://jupyter.org/ # Available modules @@ -17,7 +21,7 @@ To start using JupyterLab, load one of these modules using a `module load` comma module load JupyterLab/4.0.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,46 @@ module load JupyterLab/4.0.5-GCCcore-12.3.0 |JupyterLab/3.0.16-GCCcore-10.3.0|x|-|x|-|x|-| |JupyterLab/2.2.8-GCCcore-10.2.0|x|x|x|x|x|x| |JupyterLab/1.2.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### JupyterLab/4.0.5-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +async-lru-2.0.4, json5-0.9.14, jupyter-lsp-2.2.0, jupyterlab-4.0.5, jupyterlab_server-2.24.0 + +### JupyterLab/4.0.3-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +async-lru-2.0.3, attrs-23.1.0, hatchling-1.18.0, json5-0.9.14, jsonschema-4.18.4, jsonschema_specifications-2023.7.1, jupyter-lsp-2.2.0, jupyterlab-4.0.3, jupyterlab_server-2.23.0, referencing-0.30.0, rpds_py-0.9.2, trove-classifiers-2023.7.6 + +### JupyterLab/3.5.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +json5-0.9.10, jupyterlab-3.5.0, jupyterlab_server-2.13.0, nbclassic-0.4.8, notebook_shim-0.1.0 + +### JupyterLab/3.1.6-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +anyio-3.3.0, json5-0.9.6, jupyter_server-1.10.2, JupyterLab-3.1.6, jupyterlab_server-2.7.0, nbclassic-0.3.1, requests-unixsocket-0.2.0, sniffio-1.2.0, websocket-client-1.2.0 + +### JupyterLab/3.0.16-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +anyio-3.2.1, json5-0.9.6, jupyter_server-1.9.0, JupyterLab-3.0.16, jupyterlab_server-2.6.0, nbclassic-0.3.1, requests-unixsocket-0.2.0, sniffio-1.2.0, websocket-client-1.1.0 + +### JupyterLab/2.2.8-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +json5-0.9.5, JupyterLab-2.2.8, jupyterlab_server-1.2.0 + +### JupyterLab/1.2.5-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +json5-0.8.5, JupyterLab-1.2.5, jupyterlab_server-1.0.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterNotebook.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterNotebook.md index a2075abeaef3..a77ecdb3084f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterNotebook.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterNotebook.md @@ -6,6 +6,10 @@ hide: JupyterNotebook =============== + +The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience. + +https://jupyter.org/ # Available modules @@ -17,7 +21,7 @@ To start using JupyterNotebook, load one of these modules using a `module load` module load JupyterNotebook/7.0.3-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/KMC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/KMC.md index 1a8524866e60..c9afeed4e25e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/KMC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/KMC.md @@ -6,6 +6,10 @@ hide: KMC === + +KMC is a disk-based programm for counting k-mers from (possibly gzipped) FASTQ/FASTA files. + +http://sun.aei.polsl.pl/kmc # Available modules @@ -17,7 +21,7 @@ To start using KMC, load one of these modules using a `module load` command like module load KMC/3.2.1-GCC-11.2.0-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/KaHIP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/KaHIP.md index db6d735ffcfa..e3799fc00232 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/KaHIP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/KaHIP.md @@ -6,6 +6,10 @@ hide: KaHIP ===== + +The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning. + +https://kahip.github.io/ # Available modules @@ -17,7 +21,7 @@ To start using KaHIP, load one of these modules using a `module load` command li module load KaHIP/3.14-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kaleido.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kaleido.md index a8ed12e60c68..cc70abb420cc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Kaleido.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Kaleido.md @@ -6,6 +6,10 @@ hide: Kaleido ======= + +Fast static image export for web-based visualization libraries with zero dependencies + +https://github.com/plotly/Kaleido # Available modules @@ -17,7 +21,7 @@ To start using Kaleido, load one of these modules using a `module load` command module load Kaleido/0.1.0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kalign.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kalign.md index d33fabaaff31..d9d5a31f7fca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Kalign.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Kalign.md @@ -6,6 +6,10 @@ hide: Kalign ====== + +Kalign is a fast multiple sequence alignment program for biological sequences. + +https://github.com/TimoLassmann/kalign # Available modules @@ -17,7 +21,7 @@ To start using Kalign, load one of these modules using a `module load` command l module load Kalign/3.3.5-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kent_tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kent_tools.md index 19b5906b8a69..b071a7ff689f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Kent_tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Kent_tools.md @@ -6,6 +6,10 @@ hide: Kent_tools ========== + +Kent tools: collection of tools used by the UCSC genome browser. + +http://genome.cse.ucsc.edu/ # Available modules @@ -17,7 +21,7 @@ To start using Kent_tools, load one of these modules using a `module load` comma module load Kent_tools/20190326-linux.x86_64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Keras.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Keras.md index 8d1d525be84c..d3f26e21e412 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Keras.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Keras.md @@ -6,6 +6,10 @@ hide: Keras ===== + +Keras is a deep learning API written in Python, running on top of the machine learning platform TensorFlow. + +https://keras.io/ # Available modules @@ -17,10 +21,29 @@ To start using Keras, load one of these modules using a `module load` command li module load Keras/2.4.3-fosscuda-2020b-TensorFlow-2.5.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Keras/2.4.3-fosscuda-2020b-TensorFlow-2.5.0|x|-|-|-|x|-| |Keras/2.4.3-fosscuda-2020b|-|-|-|-|x|-| |Keras/2.4.3-foss-2020b|-|x|x|x|x|x| + + +### Keras/2.4.3-fosscuda-2020b-TensorFlow-2.5.0 + +This is a list of extensions included in the module: + +Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2 + +### Keras/2.4.3-fosscuda-2020b + +This is a list of extensions included in the module: + +Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2 + +### Keras/2.4.3-foss-2020b + +This is a list of extensions included in the module: + +Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/KerasTuner.md b/mkdocs/docs/HPC/only/gent/available_software/detail/KerasTuner.md index 1881d3a68713..d0102e088891 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/KerasTuner.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/KerasTuner.md @@ -6,6 +6,10 @@ hide: KerasTuner ========== + +KerasTuner is an easy-to-use, scalable hyperparameter optimization framework that solves the painpoints of hyperparameter search. + +https://keras.io/keras_tuner # Available modules @@ -17,8 +21,15 @@ To start using KerasTuner, load one of these modules using a `module load` comma module load KerasTuner/1.3.5-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |KerasTuner/1.3.5-foss-2022a|x|x|x|x|x|x| + + +### KerasTuner/1.3.5-foss-2022a + +This is a list of extensions included in the module: + +keras-tuner-1.3.5, kt-legacy-1.0.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken.md index 3c58fd7f1e51..135b4db340b0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken.md @@ -6,6 +6,10 @@ hide: Kraken ====== + +Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. + +https://ccb.jhu.edu/software/kraken/ # Available modules @@ -17,7 +21,7 @@ To start using Kraken, load one of these modules using a `module load` command l module load Kraken/1.1.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken2.md index a27966c83d69..dfc2351dcfb6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken2.md @@ -6,6 +6,10 @@ hide: Kraken2 ======= + +Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. + +https://github.com/DerrickWood/kraken2/wiki # Available modules @@ -17,7 +21,7 @@ To start using Kraken2, load one of these modules using a `module load` command module load Kraken2/2.1.2-gompi-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/KrakenUniq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/KrakenUniq.md index 041cee3ebb97..64f123a07a3c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/KrakenUniq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/KrakenUniq.md @@ -6,6 +6,10 @@ hide: KrakenUniq ========== + +KrakenUniq: confident and fast metagenomics classification using unique k-mer counts + +https://github.com/fbreitwieser/krakenuniq/ # Available modules @@ -17,7 +21,7 @@ To start using KrakenUniq, load one of these modules using a `module load` comma module load KrakenUniq/1.0.3-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/KronaTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/KronaTools.md index 2bdedbbef978..923e4863c18c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/KronaTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/KronaTools.md @@ -6,6 +6,10 @@ hide: KronaTools ========== + +Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files. + +https://github.com/marbl/Krona/wiki/KronaTools # Available modules @@ -17,7 +21,7 @@ To start using KronaTools, load one of these modules using a `module load` comma module load KronaTools/2.8.1-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LAME.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LAME.md index 780aee485f83..3bdbf56fe8ea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LAME.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LAME.md @@ -6,6 +6,10 @@ hide: LAME ==== + +LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL. + +http://lame.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using LAME, load one of these modules using a `module load` command lik module load LAME/3.100-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LAMMPS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LAMMPS.md index c7c3afdc7586..5d34478a647b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LAMMPS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LAMMPS.md @@ -6,6 +6,10 @@ hide: LAMMPS ====== + +LAMMPS is a classical molecular dynamics code, and an acronymfor Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS haspotentials for solid-state materials (metals, semiconductors) and soft matter(biomolecules, polymers) and coarse-grained or mesoscopic systems. It can beused to model atoms or, more generically, as a parallel particle simulator atthe atomic, meso, or continuum scale. LAMMPS runs on single processors or inparallel using message-passing techniques and a spatial-decomposition of thesimulation domain. The code is designed to be easy to modify or extend with newfunctionality. + +https://lammps.sandia.gov/ # Available modules @@ -17,7 +21,7 @@ To start using LAMMPS, load one of these modules using a `module load` command l module load LAMMPS/patch_20Nov2019-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LAST.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LAST.md index 56e22260e68e..0c738cab13dd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LAST.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LAST.md @@ -6,6 +6,10 @@ hide: LAST ==== + +LAST finds similar regions between sequences. + +http://last.cbrc.jp/ # Available modules @@ -17,7 +21,7 @@ To start using LAST, load one of these modules using a `module load` command lik module load LAST/1179-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LASTZ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LASTZ.md index e843c44ac688..efb1feb41e42 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LASTZ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LASTZ.md @@ -6,6 +6,10 @@ hide: LASTZ ===== + +LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. + +https://www.bx.psu.edu/~rsharris/lastz/ # Available modules @@ -17,7 +21,7 @@ To start using LASTZ, load one of these modules using a `module load` command li module load LASTZ/1.04.22-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LDC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LDC.md index 2e9164c95b16..b85f627ffade 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LDC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LDC.md @@ -6,6 +6,10 @@ hide: LDC === + +The LLVM-based D Compiler + +https://wiki.dlang.org/LDC # Available modules @@ -17,7 +21,7 @@ To start using LDC, load one of these modules using a `module load` command like module load LDC/1.30.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LERC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LERC.md index a14946e6b38b..5e619aa13143 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LERC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LERC.md @@ -6,6 +6,10 @@ hide: LERC ==== + +LERC is an open-source image or raster format which supports rapid encoding and decodingfor any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding,so the precision of the original input image is preserved (within user defined error bounds). + +https://github.com/Esri/lerc # Available modules @@ -17,7 +21,7 @@ To start using LERC, load one of these modules using a `module load` command lik module load LERC/4.0.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LIANA+.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LIANA+.md index 1525cd959af0..f3879bbda70e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LIANA+.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LIANA+.md @@ -6,6 +6,10 @@ hide: LIANA+ ====== + +LIANA+ is a scalable framework that integrates and extends existing methods and knowledge to studycell-cell communication in single-cell, spatially-resolved, and multi-modal omics data. + +https://liana-py.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using LIANA+, load one of these modules using a `module load` command l module load LIANA+/1.0.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |LIANA+/1.0.1-foss-2022a|x|x|x|x|-|x| + + +### LIANA+/1.0.1-foss-2022a + +This is a list of extensions included in the module: + +liana-1.0.1, mizani-0.9.3, mudata-0.2.3, plotnine-0.10.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LIBSVM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LIBSVM.md index 4b3f58658f37..405a2f588a8c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LIBSVM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LIBSVM.md @@ -6,6 +6,10 @@ hide: LIBSVM ====== + +LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification. + +https://www.csie.ntu.edu.tw/~cjlin/libsvm/ # Available modules @@ -17,7 +21,7 @@ To start using LIBSVM, load one of these modules using a `module load` command l module load LIBSVM/3.30-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LLVM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LLVM.md index 133cbcfc1452..b4e8274eb760 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LLVM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LLVM.md @@ -6,6 +6,10 @@ hide: LLVM ==== + +The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. + +https://llvm.org/ # Available modules @@ -17,7 +21,7 @@ To start using LLVM, load one of these modules using a `module load` command lik module load LLVM/16.0.6-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LMDB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LMDB.md index c3e1c3d432fb..e4ff5f12b471 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LMDB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LMDB.md @@ -6,6 +6,10 @@ hide: LMDB ==== + +LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases. + +https://symas.com/lmdb # Available modules @@ -17,7 +21,7 @@ To start using LMDB, load one of these modules using a `module load` command lik module load LMDB/0.9.31-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LMfit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LMfit.md index f6bda4cc53d4..236db3965dea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LMfit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LMfit.md @@ -6,6 +6,10 @@ hide: LMfit ===== + +Lmfit provides a high-level interface to non-linear optimization and curve fitting problems for Python + +https://lmfit.github.io/lmfit-py # Available modules @@ -17,8 +21,15 @@ To start using LMfit, load one of these modules using a `module load` command li module load LMfit/1.0.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |LMfit/1.0.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### LMfit/1.0.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +asteval-0.9.18, lmfit-1.0.0, uncertainties-3.1.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LPJmL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LPJmL.md index ab0f78144af9..d4d9007ae1c1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LPJmL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LPJmL.md @@ -6,6 +6,10 @@ hide: LPJmL ===== + +Dynamic global vegetation model with managed land and river routing + +https://github.com/PIK-LPJmL/LPJmL # Available modules @@ -17,7 +21,7 @@ To start using LPJmL, load one of these modules using a `module load` command li module load LPJmL/4.0.003-iimpi-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LPeg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LPeg.md index 501959da7614..f2c42036c65a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LPeg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LPeg.md @@ -6,6 +6,10 @@ hide: LPeg ==== + +LPeg is a new pattern-matching library for Lua, based on Parsing Expression Grammars (PEGs). + +http://www.inf.puc-rio.br/~roberto/lpeg/ # Available modules @@ -17,7 +21,7 @@ To start using LPeg, load one of these modules using a `module load` command lik module load LPeg/1.0.2-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md index c2794683499b..b31b3cd9c42a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md @@ -6,6 +6,10 @@ hide: LSD2 ==== + +Least-squares methods to estimate rates and dates from phylogenies + +https://github.com/tothuhien/lsd2 # Available modules @@ -17,7 +21,7 @@ To start using LSD2, load one of these modules using a `module load` command lik module load LSD2/2.4.1-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LUMPY.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LUMPY.md index aadde3e83fe4..33caaf67302a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LUMPY.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LUMPY.md @@ -6,6 +6,10 @@ hide: LUMPY ===== + +A probabilistic framework for structural variant discovery. + +https://github.com/arq5x/lumpy-sv # Available modules @@ -17,7 +21,7 @@ To start using LUMPY, load one of these modules using a `module load` command li module load LUMPY/0.3.1-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LZO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LZO.md index 679e6d395aec..61a7ac8430b5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LZO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LZO.md @@ -6,6 +6,10 @@ hide: LZO === + +Portable lossless data compression library + +https://www.oberhumer.com/opensource/lzo/ # Available modules @@ -17,7 +21,7 @@ To start using LZO, load one of these modules using a `module load` command like module load LZO/2.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/L_RNA_scaffolder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/L_RNA_scaffolder.md index af711166efe3..69114c9adbdf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/L_RNA_scaffolder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/L_RNA_scaffolder.md @@ -6,6 +6,10 @@ hide: L_RNA_scaffolder ================ + +L_RNA_scaffolder is a genome scaffolding tool with long trancriptome reads + +https://github.com/CAFS-bioinformatics/L_RNA_scaffolder # Available modules @@ -17,7 +21,7 @@ To start using L_RNA_scaffolder, load one of these modules using a `module load` module load L_RNA_scaffolder/20190530-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Lace.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Lace.md index 6b5d09581bc8..e90b5e367424 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Lace.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Lace.md @@ -6,6 +6,10 @@ hide: Lace ==== + +Building SuperTranscripts: A linear representation of transcriptome data + +https://github.com/Oshlack/Lace # Available modules @@ -17,7 +21,7 @@ To start using Lace, load one of these modules using a `module load` command lik module load Lace/1.14.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LevelDB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LevelDB.md index 1895052862b8..0c7544217c28 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LevelDB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LevelDB.md @@ -6,6 +6,10 @@ hide: LevelDB ======= + +LevelDB is a fast key-value storage library written at Google that provides anordered mapping from string keys to string values. + +https://github.com/google/leveldb # Available modules @@ -17,8 +21,15 @@ To start using LevelDB, load one of these modules using a `module load` command module load LevelDB/1.22-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |LevelDB/1.22-GCCcore-11.3.0|x|x|x|x|x|x| + + +### LevelDB/1.22-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +leveldb-0.201 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Levenshtein.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Levenshtein.md index aae2b9e10b4a..d927aacb24d9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Levenshtein.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Levenshtein.md @@ -6,6 +6,10 @@ hide: Levenshtein =========== + +Python extension for computing string edit distances and similarities. + +https://pypi.org/project/python-Levenshtein/ # Available modules @@ -17,8 +21,15 @@ To start using Levenshtein, load one of these modules using a `module load` comm module load Levenshtein/0.24.0-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Levenshtein/0.24.0-GCCcore-12.2.0|x|x|x|x|x|x| + + +### Levenshtein/0.24.0-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +Levenshtein-0.24.0, rapidfuzz-3.6.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LiBis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LiBis.md index 2eb598a4ad42..17f08258b21e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LiBis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LiBis.md @@ -6,6 +6,10 @@ hide: LiBis ===== + +An ultrasensitive alignment method for low input bisulfite sequencing + +https://github.com/Dangertrip/LiBis # Available modules @@ -17,7 +21,7 @@ To start using LiBis, load one of these modules using a `module load` command li module load LiBis/20200428-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LibLZF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LibLZF.md index 2447f94fedc6..b04c1250b7fb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LibLZF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LibLZF.md @@ -6,6 +6,10 @@ hide: LibLZF ====== + +LibLZF is a very small data compression library. It consists of only two .c and two .h filesand is very easy to incorporate into your own programs. The compression algorithm is very, very fast, yet stillwritten in portable C. + +http://oldhome.schmorp.de/marc/liblzf.html # Available modules @@ -17,7 +21,7 @@ To start using LibLZF, load one of these modules using a `module load` command l module load LibLZF/3.6-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LibSoup.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LibSoup.md index 8ba54c3f732b..4f024cfa098d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LibSoup.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LibSoup.md @@ -6,6 +6,10 @@ hide: LibSoup ======= + +libsoup is an HTTP client/server library for GNOME. Ituses GObjects and the glib main loop, to integrate well with GNOMEapplications, and also has a synchronous API, for use in threadedapplications. + +https://wiki.gnome.org/Projects/libsoup # Available modules @@ -17,7 +21,7 @@ To start using LibSoup, load one of these modules using a `module load` command module load LibSoup/3.0.7-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LibTIFF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LibTIFF.md index 28da3edc728e..3ec771d524d9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LibTIFF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LibTIFF.md @@ -6,6 +6,10 @@ hide: LibTIFF ======= + +tiff: Library and tools for reading and writing TIFF data files + +https://libtiff.maptools.org/ # Available modules @@ -17,7 +21,7 @@ To start using LibTIFF, load one of these modules using a `module load` command module load LibTIFF/4.6.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Libint.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Libint.md index 1f3b7c04adb4..4301ad543b8b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Libint.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Libint.md @@ -6,6 +6,10 @@ hide: Libint ====== + +Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory. + +https://github.com/evaleev/libint # Available modules @@ -17,7 +21,7 @@ To start using Libint, load one of these modules using a `module load` command l module load Libint/2.7.2-GCC-12.3.0-lmax-6-cp2k ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Lighter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Lighter.md index d773a5eb4e2b..8c052990ef54 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Lighter.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Lighter.md @@ -6,6 +6,10 @@ hide: Lighter ======= + +Fast and memory-efficient sequencing error corrector + +https://github.com/mourisl/Lighter # Available modules @@ -17,7 +21,7 @@ To start using Lighter, load one of these modules using a `module load` command module load Lighter/1.1.2-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LittleCMS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LittleCMS.md index 4fb7057863c2..d405590b96c6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LittleCMS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LittleCMS.md @@ -6,6 +6,10 @@ hide: LittleCMS ========= + +Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance. + +http://www.littlecms.com/ # Available modules @@ -17,7 +21,7 @@ To start using LittleCMS, load one of these modules using a `module load` comman module load LittleCMS/2.15-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LncLOOM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LncLOOM.md index 2a1657c7e1a5..74b6b58d8331 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LncLOOM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LncLOOM.md @@ -6,6 +6,10 @@ hide: LncLOOM ======= + +LncLOOM is a graph-based framework that uses integerprogramming to identify combinations of short motifs that are deeply conservedin rapidly evolving sequences. + +https://github.com/lncLOOM/lncLOOMv2/ # Available modules @@ -17,8 +21,15 @@ To start using LncLOOM, load one of these modules using a `module load` command module load LncLOOM/2.0-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |LncLOOM/2.0-foss-2020b|-|x|x|x|x|x| + + +### LncLOOM/2.0-foss-2020b + +This is a list of extensions included in the module: + +amply-0.1.4, LncLOOM-2.0, PuLP-2.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LoRDEC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LoRDEC.md index 07fa085cab89..04ce94e9f018 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LoRDEC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LoRDEC.md @@ -6,6 +6,10 @@ hide: LoRDEC ====== + +Program for correcting sequencing errors in long reads (e.g., PacBio, Oxford Nanopore) using highlyaccurate short reads (e.g., Illumina). + +https://www.lirmm.fr/~rivals/lordec # Available modules @@ -17,7 +21,7 @@ To start using LoRDEC, load one of these modules using a `module load` command l module load LoRDEC/0.9-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md index 4e707962b146..97dd026321e2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md @@ -6,6 +6,10 @@ hide: Longshot ======== + +Longshot is a variant calling tool for diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). It takes as input an aligned BAM file and outputs a phased VCF file with variants and haplotype information. It can also output haplotype-separated BAM files that can be used for downstream analysis. Currently, it only calls single nucleotide variants (SNVs). + +https://github.com/pjedge/longshot # Available modules @@ -17,7 +21,7 @@ To start using Longshot, load one of these modules using a `module load` command module load Longshot/0.4.5-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LtrDetector.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LtrDetector.md index e4cd4b3b71de..fff3d08a1b85 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LtrDetector.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LtrDetector.md @@ -6,6 +6,10 @@ hide: LtrDetector =========== + +A modern tool-suite for detectinglong terminal repeat retrotransposons de-novo onthe genomic scale + +https://github.com/TulsaBioinformaticsToolsmith/LtrDetector # Available modules @@ -17,7 +21,7 @@ To start using LtrDetector, load one of these modules using a `module load` comm module load LtrDetector/1.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Lua.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Lua.md index 7f8918c3844b..1ae9167054f5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Lua.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Lua.md @@ -6,6 +6,10 @@ hide: Lua === + +Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping. + +https://www.lua.org/ # Available modules @@ -17,7 +21,7 @@ To start using Lua, load one of these modules using a `module load` command like module load Lua/5.4.6-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/M1QN3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/M1QN3.md index f0a30d6a81da..693e2e4e1593 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/M1QN3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/M1QN3.md @@ -6,6 +6,10 @@ hide: M1QN3 ===== + +A solver of large-scale unconstrained minimization problems + +https://who.rocq.inria.fr/Jean-Charles.Gilbert/modulopt/optimization-routines/m1qn3/m1qn3.html # Available modules @@ -17,7 +21,7 @@ To start using M1QN3, load one of these modules using a `module load` command li module load M1QN3/3.3-GCC-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/M4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/M4.md index 8601779f9fbd..b9879d9f64cd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/M4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/M4.md @@ -6,6 +6,10 @@ hide: M4 == + +GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. + +http://www.gnu.org/software/m4/m4.html # Available modules @@ -17,7 +21,7 @@ To start using M4, load one of these modules using a `module load` command like: module load M4/1.4.19-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MACS2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MACS2.md index e6d7b3fb8479..10f3004c7d11 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MACS2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MACS2.md @@ -6,6 +6,10 @@ hide: MACS2 ===== + +Model Based Analysis for ChIP-Seq data + +https://github.com/taoliu/MACS # Available modules @@ -17,7 +21,7 @@ To start using MACS2, load one of these modules using a `module load` command li module load MACS2/2.2.7.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MACS3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MACS3.md index b7084bf2dadc..3258ea7666f3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MACS3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MACS3.md @@ -6,6 +6,10 @@ hide: MACS3 ===== + +Model Based Analysis for ChIP-Seq data + +https://macs3-project.github.io/MACS/ # Available modules @@ -17,9 +21,22 @@ To start using MACS3, load one of these modules using a `module load` command li module load MACS3/3.0.1-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |MACS3/3.0.1-gfbf-2023a|x|x|x|x|x|x| |MACS3/3.0.0-foss-2022b|x|x|x|x|x|x| + + +### MACS3/3.0.1-gfbf-2023a + +This is a list of extensions included in the module: + +cykhash-2.0.1, MACS3-3.0.1 + +### MACS3/3.0.0-foss-2022b + +This is a list of extensions included in the module: + +cykhash-2.0.1, MACS3-3.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md index f711baa3097b..d8f23653da12 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md @@ -6,6 +6,10 @@ hide: MAFFT ===== + +MAFFT is a multiple sequence alignment program for unix-like operating systems.It offers a range of multiple alignment methods, L-INS-i (accurate; for alignmentof <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc. + +https://mafft.cbrc.jp/alignment/software/source.html # Available modules @@ -17,7 +21,7 @@ To start using MAFFT, load one of these modules using a `module load` command li module load MAFFT/7.520-GCC-12.3.0-with-extensions ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MAGeCK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MAGeCK.md index 71a0e792f21f..1aba535dc144 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MAGeCK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MAGeCK.md @@ -6,6 +6,10 @@ hide: MAGeCK ====== + +Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens (or GeCKO) technology. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute, and is being actively updated by Wei Li lab from Children's National Medical Center. + +https://sourceforge.net/p/mageck/wiki/Home/ # Available modules @@ -17,7 +21,7 @@ To start using MAGeCK, load one of these modules using a `module load` command l module load MAGeCK/0.5.9.5-gfbf-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MARS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MARS.md index 457a46a20f20..da377be1bad1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MARS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MARS.md @@ -6,6 +6,10 @@ hide: MARS ==== + +improving Multiple circular sequence Alignment using Refined Sequences + +https://github.com/lorrainea/MARS # Available modules @@ -17,7 +21,7 @@ To start using MARS, load one of these modules using a `module load` command lik module load MARS/20191101-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MATIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MATIO.md index 70bbc6d2379f..0836118d0cab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MATIO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MATIO.md @@ -6,6 +6,10 @@ hide: MATIO ===== + +matio is an C library for reading and writing Matlab MAT files. + +https://sourceforge.net/projects/matio/ # Available modules @@ -17,7 +21,7 @@ To start using MATIO, load one of these modules using a `module load` command li module load MATIO/1.5.17-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md index 1886b452986c..caa5785e1fdb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md @@ -6,6 +6,10 @@ hide: MATLAB ====== + +MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. + +http://www.mathworks.com/products/matlab # Available modules @@ -17,7 +21,7 @@ To start using MATLAB, load one of these modules using a `module load` command l module load MATLAB/2022b-r5 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MBROLA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MBROLA.md index 19b0dfb068a5..667d0540d751 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MBROLA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MBROLA.md @@ -6,6 +6,10 @@ hide: MBROLA ====== + +MBROLA is a speech synthesizer based on the concatenation of diphones.It takes a list of phonemes as input, together with prosodic information(duration of phonemes and a piecewise linear description of pitch),and produces speech samples on 16 bits (linear),at the sampling frequency of the diphone database.MBROLA voices project provides list of MBROLA speech synthesizer voices.It is intended to provide easier collaboration andautomatic updates for individual users and packagers. + +['https://github.com/numediart/MBROLA', 'https://github.com/numediart/MBROLA-voices'] # Available modules @@ -17,7 +21,7 @@ To start using MBROLA, load one of these modules using a `module load` command l module load MBROLA/3.3-GCCcore-9.3.0-voices-20200330 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MCL.md index 2e1bd30d60f2..71b8187e1a11 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MCL.md @@ -6,6 +6,10 @@ hide: MCL === + +The MCL algorithm is short for the Markov Cluster Algorithm, a fastand scalable unsupervised cluster algorithm for graphs (also known as networks) basedon simulation of (stochastic) flow in graphs. + +https://micans.org/mcl/ # Available modules @@ -17,7 +21,7 @@ To start using MCL, load one of these modules using a `module load` command like module load MCL/22.282-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MDAnalysis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MDAnalysis.md index a5cec44c92bb..17a83a87cc17 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MDAnalysis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MDAnalysis.md @@ -6,6 +6,10 @@ hide: MDAnalysis ========== + +MDAnalysis is an object-oriented Python library to analyze trajectories from molecular dynamics (MD)simulations in many popular formats. + +https://www.mdanalysis.org/ # Available modules @@ -17,9 +21,22 @@ To start using MDAnalysis, load one of these modules using a `module load` comma module load MDAnalysis/2.4.2-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |MDAnalysis/2.4.2-foss-2022b|x|x|x|x|x|x| |MDAnalysis/2.4.2-foss-2021a|x|x|x|x|x|x| + + +### MDAnalysis/2.4.2-foss-2022b + +This is a list of extensions included in the module: + +fasteners-0.18, funcsigs-1.0.2, GridDataFormats-1.0.1, gsd-2.8.0, MDAnalysis-2.4.2, mmtf-python-1.1.3, mrcfile-1.4.3, msgpack-1.0.5 + +### MDAnalysis/2.4.2-foss-2021a + +This is a list of extensions included in the module: + +biopython-1.81, fasteners-0.18, GridDataFormats-1.0.1, gsd-2.8.0, MDAnalysis-2.4.2, mmtf-python-1.1.3, mrcfile-1.4.3, msgpack-1.0.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MDTraj.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MDTraj.md index 9c8dc9b9f3a3..e22e3ebbbc77 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MDTraj.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MDTraj.md @@ -6,6 +6,10 @@ hide: MDTraj ====== + +Read, write and analyze MD trajectories with only a few lines of Python code. + +https://mdtraj.org # Available modules @@ -17,7 +21,7 @@ To start using MDTraj, load one of these modules using a `module load` command l module load MDTraj/1.9.7-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -31,3 +35,52 @@ module load MDTraj/1.9.7-intel-2022a |MDTraj/1.9.4-intel-2020a-Python-3.8.2|-|x|x|-|x|x| |MDTraj/1.9.3-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |MDTraj/1.9.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### MDTraj/1.9.7-intel-2022a + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.1 + +### MDTraj/1.9.7-intel-2021b + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.0.5 + +### MDTraj/1.9.7-foss-2022a + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.1 + +### MDTraj/1.9.7-foss-2021a + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.1 + +### MDTraj/1.9.5-intel-2020b + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.2, mdtraj-1.9.5, pymbar-3.0.5 + +### MDTraj/1.9.5-fosscuda-2020b + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.2, mdtraj-1.9.5, pymbar-3.0.5 + +### MDTraj/1.9.5-foss-2020b + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.2, mdtraj-1.9.5, pymbar-3.0.5 + +### MDTraj/1.9.4-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +astor-0.8.1, mdtraj-1.9.4, pymbar-3.0.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGA.md index 0c198229a22a..744e997004db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGA.md @@ -6,6 +6,10 @@ hide: MEGA ==== + +MEGA-CC (Molecular Evolutionary Genetics Analysis Computational Core) is an integrated suite of tools for statistics-based comparative analysis of molecular sequence data based on evolutionary principles. + +https://www.megasoftware.net/ # Available modules @@ -17,7 +21,7 @@ To start using MEGA, load one of these modules using a `module load` command lik module load MEGA/11.0.10 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAHIT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAHIT.md index 641d085c85ab..8a08022367ce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAHIT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAHIT.md @@ -6,6 +6,10 @@ hide: MEGAHIT ======= + +An ultra-fast single-node solution for large and complexmetagenomics assembly via succinct de Bruijn graph + +https://github.com/voutcn/megahit # Available modules @@ -17,7 +21,7 @@ To start using MEGAHIT, load one of these modules using a `module load` command module load MEGAHIT/1.2.9-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAN.md index 9960cf27669c..34cf19e025cd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAN.md @@ -6,6 +6,10 @@ hide: MEGAN ===== + +MEGAN is a comprehensive toolbox for interactively analyzing microbiome data + +http://megan.informatik.uni-tuebingen.de/ # Available modules @@ -17,7 +21,7 @@ To start using MEGAN, load one of these modules using a `module load` command li module load MEGAN/6.25.3-Java-17 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MEM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MEM.md index 639c83ece31c..50a410e03a4e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MEM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MEM.md @@ -6,6 +6,10 @@ hide: MEM === + +Marker Enrichment Modeling (MEM) is a tool designed to calculate enrichment scores. + +https://github.com/cytolab/mem # Available modules @@ -17,7 +21,7 @@ To start using MEM, load one of these modules using a `module load` command like module load MEM/20191023-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MEME.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MEME.md index a84e8ed71db2..2c3b6f22be9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MEME.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MEME.md @@ -6,6 +6,10 @@ hide: MEME ==== + +The MEME Suite allows you to: * discover motifs using MEME, DREME (DNA only) or GLAM2 on groups of related DNA or protein sequences, * search sequence databases with motifs using MAST, FIMO, MCAST or GLAM2SCAN, * compare a motif to all motifs in a database of motifs, * associate motifs with Gene Ontology terms via their putative target genes, and * analyse motif enrichment using SpaMo or CentriMo. + +https://meme-suite.org/meme/index.html # Available modules @@ -17,7 +21,7 @@ To start using MEME, load one of these modules using a `module load` command lik module load MEME/5.5.4-gompi-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MESS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MESS.md index 274cd874148b..e3e1205feac7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MESS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MESS.md @@ -6,6 +6,10 @@ hide: MESS ==== + +Master Equation System Solver (MESS) + +https://github.com/PACChem/MESS # Available modules @@ -17,7 +21,7 @@ To start using MESS, load one of these modules using a `module load` command lik module load MESS/0.1.6-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/METIS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/METIS.md index 5c440ef15970..17aac4515d37 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/METIS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/METIS.md @@ -6,6 +6,10 @@ hide: METIS ===== + +METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. + +http://glaros.dtc.umn.edu/gkhome/metis/metis/overview # Available modules @@ -17,7 +21,7 @@ To start using METIS, load one of these modules using a `module load` command li module load METIS/5.1.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MIGRATE-N.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MIGRATE-N.md index 7384ea7a58cc..ec3f30f3e5fb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MIGRATE-N.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MIGRATE-N.md @@ -6,6 +6,10 @@ hide: MIGRATE-N ========= + +Migrate estimates population parameters, effective population sizesand migration rates of n populations, using genetic data. It uses a coalescent theory approach taking into account history of mutations and uncertainty of the genealogy. + +https://peterbeerli.com/migrate-html5/index.html # Available modules @@ -17,7 +21,7 @@ To start using MIGRATE-N, load one of these modules using a `module load` comman module load MIGRATE-N/5.0.4-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MMseqs2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MMseqs2.md index c2d607512826..75d6c75e23fd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MMseqs2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MMseqs2.md @@ -6,6 +6,10 @@ hide: MMseqs2 ======= + +MMseqs2: ultra fast and sensitive search and clustering suite + +https://mmseqs.com # Available modules @@ -17,7 +21,7 @@ To start using MMseqs2, load one of these modules using a `module load` command module load MMseqs2/14-7e284-gompi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MOABS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MOABS.md index 352ab0be511d..ea4aaa04f478 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MOABS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MOABS.md @@ -6,6 +6,10 @@ hide: MOABS ===== + +MOABS: MOdel based Analysis of Bisulfite Sequencing data + +https://github.com/sunnyisgalaxy/moabs # Available modules @@ -17,7 +21,7 @@ To start using MOABS, load one of these modules using a `module load` command li module load MOABS/1.3.9.6-gompi-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MONAI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MONAI.md index ad3639094516..a4c0dbfd1f24 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MONAI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MONAI.md @@ -6,6 +6,10 @@ hide: MONAI ===== + +MONAI is a PyTorch-based, open-source framework for deep learning in healthcareimaging, part of PyTorch Ecosystem. + +https://monai.io/ # Available modules @@ -17,9 +21,22 @@ To start using MONAI, load one of these modules using a `module load` command li module load MONAI/1.0.1-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |MONAI/1.0.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |MONAI/1.0.1-foss-2022a|x|x|x|x|x|x| + + +### MONAI/1.0.1-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +fire-0.5.0, gdown-4.7.1, lmdb-1.4.1, MONAI-1.0.1, termcolor-2.3.0 + +### MONAI/1.0.1-foss-2022a + +This is a list of extensions included in the module: + +MONAI-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MOOSE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MOOSE.md index fe57d8859f88..e101449f60ac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MOOSE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MOOSE.md @@ -6,6 +6,10 @@ hide: MOOSE ===== + +The Multiphysics Object-Oriented Simulation Environment (MOOSE) is a finite-element, multiphysicsframework primarily developed by Idaho National Laboratory + +https://mooseframework.inl.gov # Available modules @@ -17,7 +21,7 @@ To start using MOOSE, load one of these modules using a `module load` command li module load MOOSE/2022-06-10-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MPC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MPC.md index e5483c61b33f..a2d8bfa5db21 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MPC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MPC.md @@ -6,6 +6,10 @@ hide: MPC === + +Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal. + +http://www.multiprecision.org/ # Available modules @@ -17,7 +21,7 @@ To start using MPC, load one of these modules using a `module load` command like module load MPC/1.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MPFR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MPFR.md index 089bba5d7a28..e575e7111921 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MPFR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MPFR.md @@ -6,6 +6,10 @@ hide: MPFR ==== + +The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. + +https://www.mpfr.org # Available modules @@ -17,7 +21,7 @@ To start using MPFR, load one of these modules using a `module load` command lik module load MPFR/4.2.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MRtrix.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MRtrix.md index 4e7e51feed05..47c556a6f5e4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MRtrix.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MRtrix.md @@ -6,6 +6,10 @@ hide: MRtrix ====== + +MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines. + +http://www.brain.org.au/software/index.html#mrtrix # Available modules @@ -17,7 +21,7 @@ To start using MRtrix, load one of these modules using a `module load` command l module load MRtrix/3.0.4-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MSFragger.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MSFragger.md index 16b7d3b106c5..8955b07f2d83 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MSFragger.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MSFragger.md @@ -6,6 +6,10 @@ hide: MSFragger ========= + +MSFragger is an ultrafast database search tool for peptide identification in mass spectrometry-based proteomics. It has demonstrated excellent performance across a wide range of datasets and applications. MSFragger is suitable for standard shotgun proteomics analyses as well as large datasets (including timsTOF PASEF data), enzyme unconstrained searches (e.g., peptidome), open database searches (e.g., precursor mass tolerance set to hundreds of Daltons) for identification of modified peptides, and glycopeptide identification (N-linked and O-linked). + +https://msfragger.nesvilab.org/ # Available modules @@ -17,7 +21,7 @@ To start using MSFragger, load one of these modules using a `module load` comman module load MSFragger/4.0-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MUMPS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MUMPS.md index 9c189b064e44..f64b9eeb5247 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MUMPS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MUMPS.md @@ -6,6 +6,10 @@ hide: MUMPS ===== + +A parallel sparse direct solver + +https://graal.ens-lyon.fr/MUMPS/ # Available modules @@ -17,7 +21,7 @@ To start using MUMPS, load one of these modules using a `module load` command li module load MUMPS/5.6.1-foss-2023a-metis ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MUMmer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MUMmer.md index ea7be13c527d..84031a3577e0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MUMmer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MUMmer.md @@ -6,6 +6,10 @@ hide: MUMmer ====== + +MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. AMOS makes use of it. + +http://mummer.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using MUMmer, load one of these modules using a `module load` command l module load MUMmer/4.0.0rc1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MUSCLE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MUSCLE.md index 71c48b7ff699..d3652141358b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MUSCLE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MUSCLE.md @@ -6,6 +6,10 @@ hide: MUSCLE ====== + +MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks. + +https://drive5.com/muscle/ # Available modules @@ -17,7 +21,7 @@ To start using MUSCLE, load one of these modules using a `module load` command l module load MUSCLE/5.1.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MXNet.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MXNet.md index fd9307e63e6c..a46593a7dd85 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MXNet.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MXNet.md @@ -6,6 +6,10 @@ hide: MXNet ===== + +Flexible and Efficient Library for Deep Learning + +https://mxnet.io/ # Available modules @@ -17,7 +21,7 @@ To start using MXNet, load one of these modules using a `module load` command li module load MXNet/1.9.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MaSuRCA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MaSuRCA.md index 3b46f7fc567e..8d103ea81343 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MaSuRCA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MaSuRCA.md @@ -6,6 +6,10 @@ hide: MaSuRCA ======= + +MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454, Pacbio and Nanopore). + +https://www.genome.umd.edu/masurca.html # Available modules @@ -17,7 +21,7 @@ To start using MaSuRCA, load one of these modules using a `module load` command module load MaSuRCA/4.1.0-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mako.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mako.md index a3b9e96b7320..b58aa2819e24 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mako.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mako.md @@ -6,6 +6,10 @@ hide: Mako ==== + +A super-fast templating language that borrows the best ideas from the existing templating languages + +https://www.makotemplates.org # Available modules @@ -17,7 +21,7 @@ To start using Mako, load one of these modules using a `module load` command lik module load Mako/1.2.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -30,3 +34,10 @@ module load Mako/1.2.4-GCCcore-12.3.0 |Mako/1.1.2-GCCcore-9.3.0|-|x|x|-|x|x| |Mako/1.1.0-GCCcore-8.3.0|x|x|x|-|x|x| |Mako/1.0.8-GCCcore-8.2.0|-|x|-|-|-|-| + + +### Mako/1.2.4-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +Mako-1.2.4, MarkupSafe-2.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB-connector-c.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB-connector-c.md index 145f7aade690..1f31c62cf24b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB-connector-c.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB-connector-c.md @@ -6,6 +6,10 @@ hide: MariaDB-connector-c =================== + +MariaDB Connector/C is used to connect applications developed in C/C++ to MariaDB and MySQL databases. + +https://downloads.mariadb.org/connector-c/ # Available modules @@ -17,7 +21,7 @@ To start using MariaDB-connector-c, load one of these modules using a `module lo module load MariaDB-connector-c/3.1.7-GCCcore-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB.md index 5bc17b667c76..e8b9c1bb075b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB.md @@ -6,6 +6,10 @@ hide: MariaDB ======= + +MariaDB is an enhanced, drop-in replacement for MySQL.Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga. + +https://mariadb.org/ # Available modules @@ -17,7 +21,7 @@ To start using MariaDB, load one of these modules using a `module load` command module load MariaDB/10.9.3-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mash.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mash.md index 0181f2e79339..38fb6a10037d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mash.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mash.md @@ -6,6 +6,10 @@ hide: Mash ==== + +Fast genome and metagenome distance estimation using MinHash + +http://mash.readthedocs.org # Available modules @@ -17,7 +21,7 @@ To start using Mash, load one of these modules using a `module load` command lik module load Mash/2.3-intel-compilers-2021.4.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Maven.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Maven.md index 59e59ba8bc7a..1135afab797d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Maven.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Maven.md @@ -6,6 +6,10 @@ hide: Maven ===== + +Binary maven install, Apache Maven is a software project management and comprehension tool. Based onthe concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from acentral piece of information. + +https://maven.apache.org/index.html # Available modules @@ -17,7 +21,7 @@ To start using Maven, load one of these modules using a `module load` command li module load Maven/3.6.3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MaxBin.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MaxBin.md index d0c57f6e8b8b..0445901c6ce4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MaxBin.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MaxBin.md @@ -6,6 +6,10 @@ hide: MaxBin ====== + +MaxBin is software for binning assembled metagenomic sequencesbased on an Expectation-Maximization algorithm. + +https://sourceforge.net/projects/maxbin/ # Available modules @@ -17,7 +21,7 @@ To start using MaxBin, load one of these modules using a `module load` command l module load MaxBin/2.2.7-gompi-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MedPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MedPy.md index 71733c399114..3c3c2d73b77b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MedPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MedPy.md @@ -6,6 +6,10 @@ hide: MedPy ===== + +MedPy is a library and script collection for medical image processing in Python, providing basic functionalities for reading, writing and manipulating large images of arbitrary dimensionality. Its main contributions are n-dimensional versions of popular image filters, a collection of image feature extractors, ready to be used with scikit-learn, and an exhaustive n-dimensional graph-cut package. + +https://pypi.org/project/MedPy/ # Available modules @@ -17,7 +21,7 @@ To start using MedPy, load one of these modules using a `module load` command li module load MedPy/0.4.0-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Megalodon.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Megalodon.md index 0f6a2f4c58be..d058490dfbd9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Megalodon.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Megalodon.md @@ -6,6 +6,10 @@ hide: Megalodon ========= + +Megalodon is a research command line tool to extract high accuracy modified base and sequence variantcalls from raw nanopore reads by anchoring the information rich basecalling neural network output to a referencegenome/transriptome. + +https://github.com/nanoporetech/megalodon # Available modules @@ -17,9 +21,22 @@ To start using Megalodon, load one of these modules using a `module load` comman module load Megalodon/2.3.5-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Megalodon/2.3.5-fosscuda-2020b|x|-|-|-|x|-| |Megalodon/2.3.5-foss-2020b|-|x|x|x|x|x| + + +### Megalodon/2.3.5-fosscuda-2020b + +This is a list of extensions included in the module: + +mappy-2.22, megalodon-2.3.5, ont-fast5-api-4.0.0, ont_pyguppy_client_lib-5.0.16, progressbar33-2.4 + +### Megalodon/2.3.5-foss-2020b + +This is a list of extensions included in the module: + +mappy-2.22, megalodon-2.3.5, ont-fast5-api-4.0.0, ont_pyguppy_client_lib-5.0.16, progressbar33-2.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mercurial.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mercurial.md index e2b591983eec..e8a07183b909 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mercurial.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mercurial.md @@ -6,6 +6,10 @@ hide: Mercurial ========= + +Mercurial is a free, distributed source control management tool. It efficiently handles projectsof any size and offers an easy and intuitive interface. + +https://www.mercurial-scm.org # Available modules @@ -17,7 +21,7 @@ To start using Mercurial, load one of these modules using a `module load` comman module load Mercurial/6.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mesa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mesa.md index 475f38d30117..6ee0b09aa2ad 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mesa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mesa.md @@ -6,6 +6,10 @@ hide: Mesa ==== + +Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics. + +https://www.mesa3d.org/ # Available modules @@ -17,7 +21,7 @@ To start using Mesa, load one of these modules using a `module load` command lik module load Mesa/23.1.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Meson.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Meson.md index 58221d5a2979..ce1d74e86ebc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Meson.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Meson.md @@ -6,6 +6,10 @@ hide: Meson ===== + +Meson is a cross-platform build system designed to be both as fast and as user friendly as possible. + +https://mesonbuild.com # Available modules @@ -17,7 +21,7 @@ To start using Meson, load one of these modules using a `module load` command li module load Meson/1.2.3-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mesquite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mesquite.md index 539b6866143c..642e582e7fcc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mesquite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mesquite.md @@ -6,6 +6,10 @@ hide: Mesquite ======== + +Mesh-Quality Improvement Library + +https://software.sandia.gov/mesquite/ # Available modules @@ -17,7 +21,7 @@ To start using Mesquite, load one of these modules using a `module load` command module load Mesquite/2.3.0-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaBAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaBAT.md index 25fbceebf8f8..17267d35805e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaBAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaBAT.md @@ -6,6 +6,10 @@ hide: MetaBAT ======= + +An efficient tool for accurately reconstructing single genomes from complex microbial communities + +https://bitbucket.org/berkeleylab/metabat # Available modules @@ -17,7 +21,7 @@ To start using MetaBAT, load one of these modules using a `module load` command module load MetaBAT/2.15-gompi-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaEuk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaEuk.md index f6ccf3620bfb..70c58c973df8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaEuk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaEuk.md @@ -6,6 +6,10 @@ hide: MetaEuk ======= + +MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. + +https://metaeuk.soedinglab.org # Available modules @@ -17,7 +21,7 @@ To start using MetaEuk, load one of these modules using a `module load` command module load MetaEuk/6-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaPhlAn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaPhlAn.md index d252a6e4a589..e064a809009b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaPhlAn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaPhlAn.md @@ -6,6 +6,10 @@ hide: MetaPhlAn ========= + +MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data + +https://github.com/biobakery/MetaPhlAn # Available modules @@ -17,8 +21,15 @@ To start using MetaPhlAn, load one of these modules using a `module load` comman module load MetaPhlAn/4.0.6-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |MetaPhlAn/4.0.6-foss-2022a|x|x|x|x|x|x| + + +### MetaPhlAn/4.0.6-foss-2022a + +This is a list of extensions included in the module: + +hclust2-1.0.0, MetaPhlAn-4.0.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Metagenome-Atlas.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Metagenome-Atlas.md index 4886e0137dec..4c57f41d5a28 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Metagenome-Atlas.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Metagenome-Atlas.md @@ -6,6 +6,10 @@ hide: Metagenome-Atlas ================ + +Metagenome-atlas is a easy-to-use metagenomic pipeline based on snakemake. It handles all steps from QC, Assembly, Binning, to Annotation. + +https://github.com/metagenome-atlas/atlas # Available modules @@ -17,8 +21,15 @@ To start using Metagenome-Atlas, load one of these modules using a `module load` module load Metagenome-Atlas/2.4.3-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Metagenome-Atlas/2.4.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### Metagenome-Atlas/2.4.3-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +arrow-0.17.0, binaryornot-0.4.4, click-7.1.2, colorlover-0.3.0, cookiecutter-1.7.2, cufflinks-0.17.3, jinja2-time-0.2.0, Metagenome-Atlas-2.4.3, plotly-4.11.0, poyo-0.5.0, python-slugify-4.0.1, retrying-1.3.3, ruamel.yaml-0.16.12, ruamel.yaml.clib-0.2.2, text-unidecode-1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MethylDackel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MethylDackel.md index d808b86d0001..27548e1c2dc6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MethylDackel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MethylDackel.md @@ -6,6 +6,10 @@ hide: MethylDackel ============ + +A (mostly) universal methylation extractor for BS-seq experiments. + +https://github.com/dpryan79/MethylDackel # Available modules @@ -17,7 +21,7 @@ To start using MethylDackel, load one of these modules using a `module load` com module load MethylDackel/0.5.0-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MiXCR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MiXCR.md index a79fc3c9ac00..e0be2aa9dfd7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MiXCR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MiXCR.md @@ -6,6 +6,10 @@ hide: MiXCR ===== + +MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoiresfrom any type of sequencing data. + +https://milaboratory.com/software/mixcr # Available modules @@ -17,7 +21,7 @@ To start using MiXCR, load one of these modules using a `module load` command li module load MiXCR/4.6.0-Java-17 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MicrobeAnnotator.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MicrobeAnnotator.md index 90cfda7164c8..af227439e4b8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MicrobeAnnotator.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MicrobeAnnotator.md @@ -6,6 +6,10 @@ hide: MicrobeAnnotator ================ + +Easy-to-use pipeline for the comprehensive metabolic annotation of microbial genomes. + +https://github.com/cruizperez/MicrobeAnnotator # Available modules @@ -17,8 +21,15 @@ To start using MicrobeAnnotator, load one of these modules using a `module load` module load MicrobeAnnotator/2.0.5-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |MicrobeAnnotator/2.0.5-foss-2021a|-|x|x|-|x|x| + + +### MicrobeAnnotator/2.0.5-foss-2021a + +This is a list of extensions included in the module: + +fasta-reader-1.0.0, gff-io-0.0.2, hmmer-0.1.0, importlib_resources-5.4.0, MicrobeAnnotator-2.0.5, pooch-1.5.2, wget-3.2, xopen-1.2.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mikado.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mikado.md index fdd25549dec8..0b40c518ca8a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mikado.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mikado.md @@ -6,6 +6,10 @@ hide: Mikado ====== + +Mikado is a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies. Our approach leverages transcript assemblies generated by multiple methods to define expressed loci, assign a representative transcript and return a set of gene models that selects against transcripts that are chimeric, fragmented or with short or disrupted CDS. + +https://github.com/EI-CoreBioinformatics/mikado # Available modules @@ -17,8 +21,15 @@ To start using Mikado, load one of these modules using a `module load` command l module load Mikado/2.3.4-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Mikado/2.3.4-foss-2022b|x|x|x|x|x|x| + + +### Mikado/2.3.4-foss-2022b + +This is a list of extensions included in the module: + +marshmallow-3.14.1, marshmallow_dataclass-8.5.3, Mikado-2.3.4, mypy_extensions-1.0.0, python-rapidjson-1.10, SQLAlchemy-2.0.20, SQLAlchemy-Utils-0.41.1, typeguard-4.1.2, typing_extensions-4.7.1, typing_inspect-0.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MinCED.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MinCED.md index 2e7d136982ab..566c8b42fe4c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MinCED.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MinCED.md @@ -6,6 +6,10 @@ hide: MinCED ====== + +Mining CRISPRs in Environmental Datasets + +https://github.com/ctSkennerton/minced # Available modules @@ -17,7 +21,7 @@ To start using MinCED, load one of these modules using a `module load` command l module load MinCED/0.4.2-GCCcore-8.3.0-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MinPath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MinPath.md index 568e7c8b2132..6e1540e945c2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MinPath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MinPath.md @@ -6,6 +6,10 @@ hide: MinPath ======= + +MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset. + +https://omics.informatics.indiana.edu/MinPath # Available modules @@ -17,7 +21,7 @@ To start using MinPath, load one of these modules using a `module load` command module load MinPath/1.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Miniconda3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Miniconda3.md index 2a25c29cf4a1..8818fbdb2e3a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Miniconda3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Miniconda3.md @@ -6,6 +6,10 @@ hide: Miniconda3 ========== + +Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages. + +https://docs.conda.io/en/latest/miniconda.html # Available modules @@ -17,7 +21,7 @@ To start using Miniconda3, load one of these modules using a `module load` comma module load Miniconda3/23.5.2-0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Minipolish.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Minipolish.md index eafabe0d633b..80106819f5ba 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Minipolish.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Minipolish.md @@ -6,6 +6,10 @@ hide: Minipolish ========== + +A tool for Racon polishing of miniasm assemblies + +https://github.com/rrwick/Minipolish # Available modules @@ -17,7 +21,7 @@ To start using Minipolish, load one of these modules using a `module load` comma module load Minipolish/0.1.3-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MitoHiFi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MitoHiFi.md index d687e0b57695..2a34ca101384 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MitoHiFi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MitoHiFi.md @@ -6,6 +6,10 @@ hide: MitoHiFi ======== + +MitoHiFi is a Python workflow that assembles mitogenomes from Pacbio HiFi reads + +https://github.com/marcelauliano/MitoHiFi # Available modules @@ -17,8 +21,15 @@ To start using MitoHiFi, load one of these modules using a `module load` command module load MitoHiFi/3.2-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |MitoHiFi/3.2-foss-2022b|x|x|x|x|x|x| + + +### MitoHiFi/3.2-foss-2022b + +This is a list of extensions included in the module: + +dna-features-viewer-3.1.2, MitoHiFi-3.2, mitos-2.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ModelTest-NG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ModelTest-NG.md index ffe9e0305284..cb3084428e51 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ModelTest-NG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ModelTest-NG.md @@ -6,6 +6,10 @@ hide: ModelTest-NG ============ + +ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments.ModelTest-NG supersedes jModelTest and ProtTest in one single tool, with graphical and command console interfaces. + +https://github.com/ddarriba/modeltest # Available modules @@ -17,7 +21,7 @@ To start using ModelTest-NG, load one of these modules using a `module load` com module load ModelTest-NG/0.1.7-gompi-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Molden.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Molden.md index 4968d278f5a4..e6185cadb312 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Molden.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Molden.md @@ -6,6 +6,10 @@ hide: Molden ====== + +Molden is a package for displaying Molecular Density from the Ab Initio packages GAMESS-UK, GAMESS-US and GAUSSIAN and the Semi-Empirical packages Mopac/Ampac + +https://www3.cmbi.umcn.nl/molden/ # Available modules @@ -17,7 +21,7 @@ To start using Molden, load one of these modules using a `module load` command l module load Molden/6.8-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Molekel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Molekel.md index e7f076882743..1579fe0d5211 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Molekel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Molekel.md @@ -6,6 +6,10 @@ hide: Molekel ======= + +Molekel is an open-source multi-platform molecular visualization program. + +http://ugovaretto.github.io/molekel/wiki/pmwiki.php/Main/HomePage.html # Available modules @@ -17,7 +21,7 @@ To start using Molekel, load one of these modules using a `module load` command module load Molekel/5.4.0-Linux_x86_64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mono.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mono.md index 0e4835becbd7..03ada36a606f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mono.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mono.md @@ -6,6 +6,10 @@ hide: Mono ==== + +An open source, cross-platform, implementation of C# and the CLR that is binary compatible with Microsoft.NET. + +https://www.mono-project.com/ # Available modules @@ -17,7 +21,7 @@ To start using Mono, load one of these modules using a `module load` command lik module load Mono/6.8.0.105-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Monocle3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Monocle3.md index 484b950f1898..c42477905cb7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Monocle3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Monocle3.md @@ -6,6 +6,10 @@ hide: Monocle3 ======== + +An analysis toolkit for single-cell RNA-seq. + +https://cole-trapnell-lab.github.io/monocle3/ # Available modules @@ -17,9 +21,22 @@ To start using Monocle3, load one of these modules using a `module load` command module load Monocle3/1.3.1-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Monocle3/1.3.1-foss-2022a-R-4.2.1|x|x|x|x|x|x| |Monocle3/0.2.3-foss-2020b-R-4.0.3|-|x|x|x|x|x| + + +### Monocle3/1.3.1-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +biglm-0.9-2.1, furrr-0.3.1, ggrastr-1.0.1, grr-0.9.5, leidenbase-0.1.9, Matrix.utils-0.9.8, Monocle3-1.3.1, pbmcapply-1.5.1, ragg-1.2.5, RhpcBLASctl-0.21-247.1, rlang-1.0.6, rsample-1.1.1, sf-1.0-9, slider-0.3.0, spdep-1.2-7, speedglm-0.3-5, systemfonts-1.0.4, textshaping-0.3.6, uwot-0.1.14, vctrs-0.5.2, warp-0.2.0 + +### Monocle3/0.2.3-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: + +furrr-0.2.2, grr-0.9.5, leidenbase-0.1.2, Matrix.utils-0.9.8, Monocle3-0.2.3, pbmcapply-1.5.0, RhpcBLASctl-0.20-137, rlang-0.4.10, rsample-0.0.9, sf-0.9-7, slider-0.1.5, spdep-1.1-5, speedglm-0.3-3, uwot-0.1.10, warp-0.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MrBayes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MrBayes.md index 5fb3e6c241cd..c1cb1ddcc67c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MrBayes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MrBayes.md @@ -6,6 +6,10 @@ hide: MrBayes ======= + +MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. + +https://nbisweden.github.io/MrBayes/ # Available modules @@ -17,7 +21,7 @@ To start using MrBayes, load one of these modules using a `module load` command module load MrBayes/3.2.7-gompi-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MuJoCo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MuJoCo.md index c19326ce50cb..ed30fc4c673d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MuJoCo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MuJoCo.md @@ -6,6 +6,10 @@ hide: MuJoCo ====== + +MuJoCo stands for Multi-Joint dynamics with Contact. It is a general purposephysics engine that aims to facilitate research and development in robotics,biomechanics, graphics and animation, machine learning, and other areas whichdemand fast and accurate simulation of articulated structures interacting withtheir environment. + +https://mujoco.org/ # Available modules @@ -17,7 +21,7 @@ To start using MuJoCo, load one of these modules using a `module load` command l module load MuJoCo/2.3.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MultiQC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MultiQC.md index 386164b31fe6..fa6cd175619a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MultiQC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MultiQC.md @@ -6,6 +6,10 @@ hide: MultiQC ======= + +Aggregate results from bioinformatics analyses across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools. + +https://multiqc.info # Available modules @@ -17,7 +21,7 @@ To start using MultiQC, load one of these modules using a `module load` command module load MultiQC/1.14-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,28 @@ module load MultiQC/1.14-foss-2022a |MultiQC/1.9-intel-2020a-Python-3.8.2|-|x|x|-|x|x| |MultiQC/1.8-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |MultiQC/1.8-intel-2019b-Python-2.7.16|-|x|x|-|x|x| + + +### MultiQC/1.14-foss-2022a + +This is a list of extensions included in the module: + +coloredlogs-15.0.1, colormath-3.0.0, commonmark-0.9.1, humanfriendly-10.0, lzstring-1.0.4, Markdown-3.4.1, markdown-it-py-2.1.0, mdurl-0.1.2, multiqc-1.14, Pygments-2.14.0, rich-13.3.1, rich-click-1.6.1, spectra-0.0.11 + +### MultiQC/1.9-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.2.1, multiqc-1.9, simplejson-3.17.0, spectra-0.0.11 + +### MultiQC/1.8-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.2.1, multiqc-1.8, simplejson-3.17.0, spectra-0.0.11 + +### MultiQC/1.8-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.1.1, monotonic-1.5, multiqc-1.8, networkx-2.2, simplejson-3.17.0, spectra-0.0.11 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MultilevelEstimators.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MultilevelEstimators.md index 3c8a3d0e6cd4..c3205558d64a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MultilevelEstimators.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MultilevelEstimators.md @@ -6,6 +6,10 @@ hide: MultilevelEstimators ==================== + +The Julia module for Multilevel Monte Carlo methods + +https://github.com/PieterjanRobbe/MultilevelEstimators.jl # Available modules @@ -17,8 +21,15 @@ To start using MultilevelEstimators, load one of these modules using a `module l module load MultilevelEstimators/0.1.0-GCC-11.2.0-Julia-1.7.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |MultilevelEstimators/0.1.0-GCC-11.2.0-Julia-1.7.2|x|x|x|-|x|x| + + +### MultilevelEstimators/0.1.0-GCC-11.2.0-Julia-1.7.2 + +This is a list of extensions included in the module: + +ChainRulesCore-1.15.6, ChangesOfVariables-0.1.4, Compat-4.3.0, DocStringExtensions-0.9.2, FileIO-1.16.0, InverseFunctions-0.1.8, IrrationalConstants-0.1.1, JLD2-0.4.24, JLLWrappers-1.4.1, LogExpFunctions-0.3.18, MacroTools-0.5.10, MultilevelEstimators-0.1.0, OpenSpecFun_jll-0.5.5+0, OrderedCollections-1.4.1, Preferences-1.3.0, Reexport-1.2.2, Requires-1.3.0, SpecialFunctions-1.8.7, TranscodingStreams-0.9.9 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Multiwfn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Multiwfn.md index 8a2f9aa6d2f0..901b25d8db15 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Multiwfn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Multiwfn.md @@ -6,6 +6,10 @@ hide: Multiwfn ======== + +Multiwfn is an extremely powerful program for realizingi electronic wavefunction analysis, which is a key ingredient of quantum chemistry. Multiwfn is free, open-source, high-efficient, very user-friendly and flexible, it supports almost all of the most important wavefunction analysis methods. + +http://sobereva.com/multiwfn/ # Available modules @@ -17,7 +21,7 @@ To start using Multiwfn, load one of these modules using a `module load` command module load Multiwfn/3.6-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MyCC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MyCC.md index 118cf4251af9..4c8b546adc28 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MyCC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MyCC.md @@ -6,6 +6,10 @@ hide: MyCC ==== + +MyCC is built and delivered as a tailored solution for metagenomics sequencesclassfication. + +https://sourceforge.net/projects/sb2nhri/files/MyCC/ # Available modules @@ -17,7 +21,7 @@ To start using MyCC, load one of these modules using a `module load` command lik module load MyCC/2017-03-01-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Myokit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Myokit.md index 5d0eee668628..d1f76037c87b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Myokit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Myokit.md @@ -6,6 +6,10 @@ hide: Myokit ====== + +Myokit is an open-source Python-based toolkit that facilitates modeling and simulation of cardiaccellular electrophysiology. + +http://myokit.org # Available modules @@ -17,7 +21,7 @@ To start using Myokit, load one of these modules using a `module load` command l module load Myokit/1.32.0-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NAMD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NAMD.md index 2fe54c716683..4e5913b15eda 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NAMD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NAMD.md @@ -6,6 +6,10 @@ hide: NAMD ==== + +NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. + +https://www.ks.uiuc.edu/Research/namd/ # Available modules @@ -17,7 +21,7 @@ To start using NAMD, load one of these modules using a `module load` command lik module load NAMD/2.14-foss-2023a-mpi ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NASM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NASM.md index 05c438125525..3cb501e73c89 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NASM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NASM.md @@ -6,6 +6,10 @@ hide: NASM ==== + +NASM: General-purpose x86 assembler + +https://www.nasm.us/ # Available modules @@ -17,7 +21,7 @@ To start using NASM, load one of these modules using a `module load` command lik module load NASM/2.16.01-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NCCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NCCL.md index 7d932993b60b..48dabde67fae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NCCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NCCL.md @@ -6,6 +6,10 @@ hide: NCCL ==== + +The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collectivecommunication primitives that are performance optimized for NVIDIA GPUs. + +https://developer.nvidia.com/nccl # Available modules @@ -17,7 +21,7 @@ To start using NCCL, load one of these modules using a `module load` command lik module load NCCL/2.18.3-GCCcore-12.3.0-CUDA-12.1.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NCL.md index ea2d8e09debf..fea4b3311d00 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NCL.md @@ -6,6 +6,10 @@ hide: NCL === + +NCL is an interpreted language designed specifically for scientific data analysis and visualization. + +https://www.ncl.ucar.edu # Available modules @@ -17,7 +21,7 @@ To start using NCL, load one of these modules using a `module load` command like module load NCL/6.6.2-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NCO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NCO.md index 0ca676b5ae8b..ad258772f473 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NCO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NCO.md @@ -6,6 +6,10 @@ hide: NCO === + +manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5 + +https://nco.sourceforge.net # Available modules @@ -17,7 +21,7 @@ To start using NCO, load one of these modules using a `module load` command like module load NCO/5.0.6-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NECI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NECI.md index 062994449887..f3f910dcc44d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NECI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NECI.md @@ -6,6 +6,10 @@ hide: NECI ==== + +Standalone NECI codebase designed for FCIQMC and other stochastic quantumchemistry methods. + +https://github.com/ghb24/NECI_STABLE # Available modules @@ -17,7 +21,7 @@ To start using NECI, load one of these modules using a `module load` command lik module load NECI/20230620-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NEURON.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NEURON.md index 856e3ead65a0..d5aed270e5aa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NEURON.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NEURON.md @@ -6,6 +6,10 @@ hide: NEURON ====== + +Empirically-based simulations of neurons and networks of neurons. + +https://www.neuron.yale.edu/neuron # Available modules @@ -17,7 +21,7 @@ To start using NEURON, load one of these modules using a `module load` command l module load NEURON/7.8.2-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NGS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NGS.md index eba4d3f0959c..d36e8310d26c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NGS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NGS.md @@ -6,6 +6,10 @@ hide: NGS === + +NGS is a new, domain-specific API for accessing reads, alignments and pileupsproduced from Next Generation Sequencing. + +https://github.com/ncbi/ngs # Available modules @@ -17,7 +21,7 @@ To start using NGS, load one of these modules using a `module load` command like module load NGS/2.11.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NGSpeciesID.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NGSpeciesID.md index 652c7539d565..725370cb8dbc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NGSpeciesID.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NGSpeciesID.md @@ -6,6 +6,10 @@ hide: NGSpeciesID =========== + +NGSpeciesID is a tool for clustering and consensus forming of targeted ONT reads. + +https://github.com/ksahlin/NGSpeciesID # Available modules @@ -17,7 +21,7 @@ To start using NGSpeciesID, load one of these modules using a `module load` comm module load NGSpeciesID/0.1.2.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NLMpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NLMpy.md index 5d3ce04dfdd0..37a7a3954811 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NLMpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NLMpy.md @@ -6,6 +6,10 @@ hide: NLMpy ===== + +NLMpy is a Python package for the creation of neutral landscape models that are widely used in the modelling of ecological patterns and processes across landscapes. + +https://pypi.org/project/nlmpy # Available modules @@ -17,7 +21,7 @@ To start using NLMpy, load one of these modules using a `module load` command li module load NLMpy/0.1.5-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NLTK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NLTK.md index 1d811715117a..d33e75c393b7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NLTK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NLTK.md @@ -6,6 +6,10 @@ hide: NLTK ==== + +NLTK is a leading platform for building Python programs to work with human language data. + +https://www.nltk.org/ # Available modules @@ -17,8 +21,15 @@ To start using NLTK, load one of these modules using a `module load` command lik module load NLTK/3.8.1-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |NLTK/3.8.1-foss-2022b|x|x|x|x|x|x| + + +### NLTK/3.8.1-foss-2022b + +This is a list of extensions included in the module: + +NLTK-3.8.1, python-crfsuite-0.9.10, regex-2023.12.25 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NLopt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NLopt.md index 562276303779..75331adcbcba 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NLopt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NLopt.md @@ -6,6 +6,10 @@ hide: NLopt ===== + +NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. + +http://ab-initio.mit.edu/wiki/index.php/NLopt # Available modules @@ -17,7 +21,7 @@ To start using NLopt, load one of these modules using a `module load` command li module load NLopt/2.7.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NOVOPlasty.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NOVOPlasty.md index 063216b35c4e..ae4ab241ea01 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NOVOPlasty.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NOVOPlasty.md @@ -6,6 +6,10 @@ hide: NOVOPlasty ========== + +NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes. + +https://github.com/ndierckx/NOVOPlasty # Available modules @@ -17,7 +21,7 @@ To start using NOVOPlasty, load one of these modules using a `module load` comma module load NOVOPlasty/3.7-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NSPR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NSPR.md index c08e420db565..18614172352e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NSPR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NSPR.md @@ -6,6 +6,10 @@ hide: NSPR ==== + +Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions. + +https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR # Available modules @@ -17,7 +21,7 @@ To start using NSPR, load one of these modules using a `module load` command lik module load NSPR/4.35-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NSS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NSS.md index b79bb830ec9c..b2fd14add6c7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NSS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NSS.md @@ -6,6 +6,10 @@ hide: NSS === + +Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications. + +https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS # Available modules @@ -17,7 +21,7 @@ To start using NSS, load one of these modules using a `module load` command like module load NSS/3.89.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NVHPC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NVHPC.md index 4722f48d8d78..a15d9ddb5bb6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NVHPC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NVHPC.md @@ -6,6 +6,10 @@ hide: NVHPC ===== + +C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI) + +https://developer.nvidia.com/hpc-sdk/ # Available modules @@ -17,7 +21,7 @@ To start using NVHPC, load one of these modules using a `module load` command li module load NVHPC/21.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoCaller.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoCaller.md index 62b4aa2db8ca..0ba51cade8e3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoCaller.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoCaller.md @@ -6,6 +6,10 @@ hide: NanoCaller ========== + +NanoCaller is a computational method that integrates long reads in deep convolutional neural network for the detection of SNPs/indels from long-read sequencing data. + +https://github.com/WGLab/NanoCaller # Available modules @@ -17,7 +21,7 @@ To start using NanoCaller, load one of these modules using a `module load` comma module load NanoCaller/3.4.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoComp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoComp.md index 0869810dd8e5..7b2bb39831ed 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoComp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoComp.md @@ -6,6 +6,10 @@ hide: NanoComp ======== + +Comparing runs of Oxford Nanopore sequencing data and alignments + +https://github.com/wdecoster/NanoComp # Available modules @@ -17,7 +21,7 @@ To start using NanoComp, load one of these modules using a `module load` command module load NanoComp/1.13.1-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoFilt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoFilt.md index 7d9e0e226f77..89916471acfc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoFilt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoFilt.md @@ -6,6 +6,10 @@ hide: NanoFilt ======== + +Filtering and trimming of Oxford Nanopore Sequencing data + +https://github.com/wdecoster/nanofilt # Available modules @@ -17,7 +21,7 @@ To start using NanoFilt, load one of these modules using a `module load` command module load NanoFilt/2.6.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoPlot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoPlot.md index 8554dbeb6eed..3cfb1e386093 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoPlot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoPlot.md @@ -6,6 +6,10 @@ hide: NanoPlot ======== + +Plotting suite for long read sequencing data and alignments + +https://github.com/wdecoster/NanoPlot # Available modules @@ -17,7 +21,7 @@ To start using NanoPlot, load one of these modules using a `module load` command module load NanoPlot/1.33.0-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoStat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoStat.md index 2eb339eb1d23..782bd97f1aa8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoStat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoStat.md @@ -6,6 +6,10 @@ hide: NanoStat ======== + +Calculate various statistics from a long read sequencing dataset in fastq, bam or albacore sequencing summary format. + +https://github.com/wdecoster/nanostat # Available modules @@ -17,9 +21,22 @@ To start using NanoStat, load one of these modules using a `module load` command module load NanoStat/1.6.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |NanoStat/1.6.0-foss-2022a|x|x|x|x|x|x| |NanoStat/1.6.0-foss-2021a|x|x|x|x|x|x| + + +### NanoStat/1.6.0-foss-2022a + +This is a list of extensions included in the module: + +NanoStat-1.6.0 + +### NanoStat/1.6.0-foss-2021a + +This is a list of extensions included in the module: + +NanoStat-1.6.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanopolishComp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanopolishComp.md index 6d2a41709b7c..ce16b1a84492 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanopolishComp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanopolishComp.md @@ -6,6 +6,10 @@ hide: NanopolishComp ============== + +NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files + +https://adrienleger.com/NanopolishComp/ # Available modules @@ -17,7 +21,7 @@ To start using NanopolishComp, load one of these modules using a `module load` c module load NanopolishComp/0.6.11-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NetPyNE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NetPyNE.md index b322fdde73d7..73e02311d237 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NetPyNE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NetPyNE.md @@ -6,6 +6,10 @@ hide: NetPyNE ======= + +NetPyNE is an open-source Python package to facilitate the development, parallel simulation, analysis,and optimization of biological neuronal networks using the NEURON simulator. + +http://www.netpyne.org # Available modules @@ -17,8 +21,15 @@ To start using NetPyNE, load one of these modules using a `module load` command module load NetPyNE/1.0.2.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |NetPyNE/1.0.2.1-foss-2021b|x|x|x|-|x|x| + + +### NetPyNE/1.0.2.1-foss-2021b + +This is a list of extensions included in the module: + +contextlib2-21.6.0, LFPykit-0.4, matplotlib-scalebar-0.8.1, MEAutility-1.5.1, netpyne-1.0.2.1, schema-0.7.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NewHybrids.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NewHybrids.md index a840307bc35d..eb57607683d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NewHybrids.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NewHybrids.md @@ -6,6 +6,10 @@ hide: NewHybrids ========== + +This implements a Gibbs sampler to estimate the posterior probability that genetically sampledindividuals fall into each of a set of user-defined hybrid categories. + +https://ib.berkeley.edu/labs/slatkin/eriq/software/software.htm#NewHybs # Available modules @@ -17,7 +21,7 @@ To start using NewHybrids, load one of these modules using a `module load` comma module load NewHybrids/1.1_Beta3-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md index f31ddb1863de..a3d7f4aaf415 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md @@ -6,6 +6,10 @@ hide: NextGenMap ========== + +NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. + +http://cibiv.github.io/NextGenMap/ # Available modules @@ -17,7 +21,7 @@ To start using NextGenMap, load one of these modules using a `module load` comma module load NextGenMap/0.5.5-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Nextflow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Nextflow.md index cbab50c7c18a..995df8e05b6d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Nextflow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Nextflow.md @@ -6,6 +6,10 @@ hide: Nextflow ======== + +Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data + +https://www.nextflow.io # Available modules @@ -17,7 +21,7 @@ To start using Nextflow, load one of these modules using a `module load` command module load Nextflow/23.10.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NiBabel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NiBabel.md index 5c9faeb1e436..ac50e421671a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NiBabel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NiBabel.md @@ -6,6 +6,10 @@ hide: NiBabel ======= + +NiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI. + +https://nipy.github.io/nibabel # Available modules @@ -17,7 +21,7 @@ To start using NiBabel, load one of these modules using a `module load` command module load NiBabel/4.0.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,34 @@ module load NiBabel/4.0.2-foss-2022a |NiBabel/3.2.1-foss-2021a|x|x|x|-|x|x| |NiBabel/3.2.1-foss-2020b|-|x|x|x|x|x| |NiBabel/3.1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### NiBabel/4.0.2-foss-2022a + +This is a list of extensions included in the module: + +bz2file-0.98, nibabel-4.0.2 + +### NiBabel/3.2.1-fosscuda-2020b + +This is a list of extensions included in the module: + +bz2file-0.98, nibabel-3.2.1 + +### NiBabel/3.2.1-foss-2021a + +This is a list of extensions included in the module: + +bz2file-0.98, nibabel-3.2.1 + +### NiBabel/3.2.1-foss-2020b + +This is a list of extensions included in the module: + +bz2file-0.98, nibabel-3.2.1 + +### NiBabel/3.1.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +bz2file-0.98, nibabel-3.1.0, pydicom-1.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Nim.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Nim.md index 4918cc5a5002..2934250c1c07 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Nim.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Nim.md @@ -6,6 +6,10 @@ hide: Nim === + +Nim is a systems and applications programming language. + +https://nim-lang.org/ # Available modules @@ -17,7 +21,7 @@ To start using Nim, load one of these modules using a `module load` command like module load Nim/1.6.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ninja.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ninja.md index 2de6c3378162..d688825feac9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ninja.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ninja.md @@ -6,6 +6,10 @@ hide: Ninja ===== + +Ninja is a small build system with a focus on speed. + +https://ninja-build.org/ # Available modules @@ -17,7 +21,7 @@ To start using Ninja, load one of these modules using a `module load` command li module load Ninja/1.11.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Nipype.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Nipype.md index bba8127b1322..6a6a9affda56 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Nipype.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Nipype.md @@ -6,6 +6,10 @@ hide: Nipype ====== + +Nipype is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. + +https://nipype.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using Nipype, load one of these modules using a `module load` command l module load Nipype/1.8.5-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Nipype/1.8.5-foss-2021a|x|x|x|-|x|x| |Nipype/1.4.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### Nipype/1.8.5-foss-2021a + +This is a list of extensions included in the module: + +ci-info-0.3.0, etelemetry-0.3.0, funcsigs-1.0.2, looseversion-1.0.2, nipype-1.8.5, prov-2.0.0, pydotplus-2.0.2, traits-6.3.2 + +### Nipype/1.4.2-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +apipkg-1.5, ci-info-0.2.0, etelemetry-0.2.1, execnet-1.7.1, filelock-3.0.12, funcsigs-1.0.2, isodate-0.6.0, nipype-1.4.2, prov-1.5.3, pydot-1.4.1, pydotplus-2.0.2, pytest-forked-1.1.3, pytest-xdist-1.31.0, rdflib-5.0.0, simplejson-3.17.0, traits-6.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OBITools3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OBITools3.md index 7c2559315de1..ed8e5842e359 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OBITools3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OBITools3.md @@ -6,6 +6,10 @@ hide: OBITools3 ========= + +A package for the management of analyses and data in DNA metabarcoding. + +https://metabarcoding.org/obitools3 # Available modules @@ -17,7 +21,7 @@ To start using OBITools3, load one of these modules using a `module load` comman module load OBITools3/3.0.1b26-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX-Runtime.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX-Runtime.md index d7a93bb303f0..5b45e8605bec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX-Runtime.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX-Runtime.md @@ -6,6 +6,10 @@ hide: ONNX-Runtime ============ + +ONNX Runtime inference can enable faster customer experiences and lower costs,supporting models from deep learning frameworks such as PyTorch andTensorFlow/Keras as well as classical machine learning libraries such asscikit-learn, LightGBM, XGBoost, etc. ONNX Runtime is compatible with differenthardware, drivers, and operating systems, and provides optimal performance byleveraging hardware accelerators where applicable alongside graph optimizationsand transforms. + +https://onnxruntime.ai # Available modules @@ -17,8 +21,15 @@ To start using ONNX-Runtime, load one of these modules using a `module load` com module load ONNX-Runtime/1.16.3-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |ONNX-Runtime/1.16.3-foss-2022b|x|x|x|x|x|x| + + +### ONNX-Runtime/1.16.3-foss-2022b + +This is a list of extensions included in the module: + +coloredlogs-15.0.1, humanfriendly-10.0, ONNX-Runtime-1.16.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX.md index 361d159e5083..cc956ebfe9d7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX.md @@ -6,6 +6,10 @@ hide: ONNX ==== + +Open Neural Network Exchange (ONNX) is an open ecosystem that empowers AIdevelopers to choose the right tools as their project evolves. ONNX provides anopen source format for AI models, both deep learning and traditional ML. Itdefines an extensible computation graph model, as well as definitions ofbuilt-in operators and standard data types. Currently we focus on thecapabilities needed for inferencing (scoring). + +https://onnx.ai # Available modules @@ -17,7 +21,7 @@ To start using ONNX, load one of these modules using a `module load` command lik module load ONNX/1.15.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OPERA-MS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OPERA-MS.md index 0508af7c3062..8986b7ee4355 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OPERA-MS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OPERA-MS.md @@ -6,6 +6,10 @@ hide: OPERA-MS ======== + +OPERA-MS is a hybrid metagenomic assembler which combines the advantages of short and long-read technologies to provide high quality assemblies, addressing issues of low contiguity for short-read only assemblies, and low base-pair quality for long-read only assemblies. + +https://github.com/CSB5/OPERA-MS # Available modules @@ -17,7 +21,7 @@ To start using OPERA-MS, load one of these modules using a `module load` command module load OPERA-MS/0.9.0-20200802-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ORCA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ORCA.md index 7c9ae3e4454d..e66262f897ee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ORCA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ORCA.md @@ -6,6 +6,10 @@ hide: ORCA ==== + +ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects. + +https://orcaforum.kofo.mpg.de # Available modules @@ -17,7 +21,7 @@ To start using ORCA, load one of these modules using a `module load` command lik module load ORCA/5.0.4-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OSU-Micro-Benchmarks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OSU-Micro-Benchmarks.md index 53911fc04938..9db2058f2960 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OSU-Micro-Benchmarks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OSU-Micro-Benchmarks.md @@ -6,6 +6,10 @@ hide: OSU-Micro-Benchmarks ==================== + +OSU Micro-Benchmarks + +https://mvapich.cse.ohio-state.edu/benchmarks/ # Available modules @@ -17,7 +21,7 @@ To start using OSU-Micro-Benchmarks, load one of these modules using a `module l module load OSU-Micro-Benchmarks/7.2-gompi-2023b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Oases.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Oases.md index 4abad3b94a1b..06713ffef4a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Oases.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Oases.md @@ -6,6 +6,10 @@ hide: Oases ===== + +Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. + +http://www.ebi.ac.uk/~zerbino/oases/ # Available modules @@ -17,7 +21,7 @@ To start using Oases, load one of these modules using a `module load` command li module load Oases/20180312-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Omnipose.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Omnipose.md index 2f9e960d80ec..35a0518205f4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Omnipose.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Omnipose.md @@ -6,6 +6,10 @@ hide: Omnipose ======== + +Omnipose is a general image segmentation tool that builds on Cellpose in a number of waysdescribed in our paper. It works for both 2D and 3D images and on any imaging modality orcell shape, so long as you train it on representative images. + +https://omnipose.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using Omnipose, load one of these modules using a `module load` command module load Omnipose/0.4.4-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Omnipose/0.4.4-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |Omnipose/0.4.4-foss-2022a|x|x|x|x|x|x| + + +### Omnipose/0.4.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +cachetools-5.3.1, cellpose-omni-0.9.1, edt-2.3.1, fastremap-1.13.5, google-api-core-2.11.1, google-auth-2.22.0, google-cloud-core-2.3.3, google-cloud-storage-2.10.0, google-crc32c-1.5.0, google-resumable-media-2.5.0, googleapis-common-protos-1.59.1, natsort-8.3.1, omnipose-0.4.4, pyasn1-modules-0.2.8, roifile-2023.5.12, rsa-4.9, tifffile-2023.4.12 + +### Omnipose/0.4.4-foss-2022a + +This is a list of extensions included in the module: + +cachetools-5.3.1, cellpose-omni-0.9.1, edt-2.3.1, fastremap-1.13.5, google-api-core-2.11.1, google-auth-2.22.0, google-cloud-core-2.3.3, google-cloud-storage-2.10.0, google-crc32c-1.5.0, google-resumable-media-2.5.0, googleapis-common-protos-1.59.1, natsort-8.3.1, omnipose-0.4.4, pyasn1-modules-0.2.8, roifile-2023.5.12, rsa-4.9, tifffile-2023.4.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenAI-Gym.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenAI-Gym.md index d58098b47cee..fc04a45037de 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenAI-Gym.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenAI-Gym.md @@ -6,6 +6,10 @@ hide: OpenAI-Gym ========== + +A toolkit for developing and comparing reinforcement learning algorithms. + +https://gym.openai.com # Available modules @@ -17,8 +21,15 @@ To start using OpenAI-Gym, load one of these modules using a `module load` comma module load OpenAI-Gym/0.17.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |OpenAI-Gym/0.17.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### OpenAI-Gym/0.17.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +atari-py-0.2.6, box2d-py-2.3.8, cloudpickle-1.3.0, gym-0.17.1, imageio-2.8.0, pyglet-1.4.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBLAS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBLAS.md index c6db60a937c5..9d3f612f5451 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBLAS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBLAS.md @@ -6,6 +6,10 @@ hide: OpenBLAS ======== + +OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. + +https://xianyi.github.com/OpenBLAS/ # Available modules @@ -17,7 +21,7 @@ To start using OpenBLAS, load one of these modules using a `module load` command module load OpenBLAS/0.3.24-GCC-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBabel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBabel.md index bc98a9cee720..cc345002d682 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBabel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBabel.md @@ -6,6 +6,10 @@ hide: OpenBabel ========= + +Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. + +https://openbabel.org # Available modules @@ -17,7 +21,7 @@ To start using OpenBabel, load one of these modules using a `module load` comman module load OpenBabel/3.1.1-iimpi-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCV.md index bbaa0a427818..892aa478635c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCV.md @@ -6,6 +6,10 @@ hide: OpenCV ====== + +OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. + +https://opencv.org/ # Available modules @@ -17,7 +21,7 @@ To start using OpenCV, load one of these modules using a `module load` command l module load OpenCV/4.6.0-foss-2022a-contrib ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCoarrays.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCoarrays.md index 85d5a9823725..6d28eddd914f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCoarrays.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCoarrays.md @@ -6,6 +6,10 @@ hide: OpenCoarrays ============ + +OpenCoarrays is an open-source software project that supportsthe coarray Fortran (CAF) parallel programming features of the Fortran 2008standard and several features proposed for Fortran 2015 in the draft TechnicalSpecification TS 18508 Additional Parallel Features in Fortran. + +https://github.com/sourceryinstitute/opencoarrays # Available modules @@ -17,7 +21,7 @@ To start using OpenCoarrays, load one of these modules using a `module load` com module load OpenCoarrays/2.8.0-gompi-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenEXR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenEXR.md index 6abad1855156..3b594f948e1d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenEXR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenEXR.md @@ -6,6 +6,10 @@ hide: OpenEXR ======= + +OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications + +https://www.openexr.com/ # Available modules @@ -17,7 +21,7 @@ To start using OpenEXR, load one of these modules using a `module load` command module load OpenEXR/3.1.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM-Extend.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM-Extend.md index d2cd4f27ecd1..0e2a34bc7a7d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM-Extend.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM-Extend.md @@ -6,6 +6,10 @@ hide: OpenFOAM-Extend =============== + +OpenFOAM is a free, open source CFD software package.OpenFOAM has an extensive range of features to solve anything from complex fluid flowsinvolving chemical reactions, turbulence and heat transfer,to solid dynamics and electromagnetics. + +http://www.extend-project.de/ # Available modules @@ -17,7 +21,7 @@ To start using OpenFOAM-Extend, load one of these modules using a `module load` module load OpenFOAM-Extend/4.1-20200408-foss-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM.md index cf0ad28fdd64..a28f2b714bea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM.md @@ -6,6 +6,10 @@ hide: OpenFOAM ======== + +OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics. + +https://www.openfoam.org/ # Available modules @@ -17,7 +21,7 @@ To start using OpenFOAM, load one of these modules using a `module load` command module load OpenFOAM/v2206-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFace.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFace.md index 584fdf51e398..ce6dcb388165 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFace.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFace.md @@ -6,6 +6,10 @@ hide: OpenFace ======== + +OpenFace – a state-of-the art tool intended for facial landmarkdetection, head pose estimation, facial action unit recognition, and eye-gazeestimation. + +https://github.com/TadasBaltrusaitis/OpenFace # Available modules @@ -17,7 +21,7 @@ To start using OpenFace, load one of these modules using a `module load` command module load OpenFace/2.2.0-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFold.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFold.md index be5f140cccf1..70e3df2260d0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFold.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFold.md @@ -6,6 +6,10 @@ hide: OpenFold ======== + +A faithful PyTorch reproduction of DeepMind's AlphaFold 2 + +https://github.com/aqlaboratory/openfold # Available modules @@ -17,10 +21,29 @@ To start using OpenFold, load one of these modules using a `module load` command module load OpenFold/1.0.1-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |OpenFold/1.0.1-foss-2022a-CUDA-11.7.0|-|-|x|-|-|-| |OpenFold/1.0.1-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| |OpenFold/1.0.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### OpenFold/1.0.1-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +contextlib2-21.6.0, deepspeed-0.5.10, dllogger-1.0.0, flash_attn-0.2.8, hjson-3.0.2, ml_collections-0.1.0, ninja-1.10.2.3, OpenFold-1.0.1, PDBFixer-1.8.1, py-cpuinfo-8.0.0 + +### OpenFold/1.0.1-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +contextlib2-21.6.0, deepspeed-0.5.9, dllogger-1.0.0, flash_attn-0.2.8, hjson-3.0.2, ml_collections-0.1.0, ninja-1.10.2.3, OpenFold-1.0.1, PDBFixer-1.7, py-cpuinfo-8.0.0, triton-1.0.0 + +### OpenFold/1.0.0-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +contextlib2-21.6.0, deepspeed-0.5.9, dllogger-1.0.0, hjson-3.0.2, ml_collections-0.1.0, ninja-1.10.2.3, OpenFold-1.0.0, PDBFixer-1.7, py-cpuinfo-8.0.0, triton-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenForceField.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenForceField.md index 2211994ba760..c56994311411 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenForceField.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenForceField.md @@ -6,6 +6,10 @@ hide: OpenForceField ============== + +Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications. + +https://github.com/openforcefield/openforcefield/releases # Available modules @@ -17,8 +21,15 @@ To start using OpenForceField, load one of these modules using a `module load` c module load OpenForceField/0.7.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |OpenForceField/0.7.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### OpenForceField/0.7.0-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +bson-0.5.10, msgpack-python-0.5.6, OpenForceField-0.7.0, xmltodict-0.12.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenImageIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenImageIO.md index 8c440198f733..65b63c018e95 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenImageIO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenImageIO.md @@ -6,6 +6,10 @@ hide: OpenImageIO =========== + +OpenImageIO is a library for reading and writing images, and a bunch of related classes, utilities, and applications. + +https://openimageio.org/ # Available modules @@ -17,7 +21,7 @@ To start using OpenImageIO, load one of these modules using a `module load` comm module load OpenImageIO/2.0.12-iimpi-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenJPEG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenJPEG.md index 152833e342e6..a8b7aba9e2f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenJPEG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenJPEG.md @@ -6,6 +6,10 @@ hide: OpenJPEG ======== + +OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software. + +https://www.openjpeg.org/ # Available modules @@ -17,7 +21,7 @@ To start using OpenJPEG, load one of these modules using a `module load` command module load OpenJPEG/2.5.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM-PLUMED.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM-PLUMED.md index e956d83bb8ec..dbc2e8f94e06 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM-PLUMED.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM-PLUMED.md @@ -6,6 +6,10 @@ hide: OpenMM-PLUMED ============= + +This project provides a connection between OpenMM andPLUMED. It allows you to bias or analyze an OpenMM simulation based oncollective variables. + +https://github.com/openmm/openmm-plumed/ # Available modules @@ -17,7 +21,7 @@ To start using OpenMM-PLUMED, load one of these modules using a `module load` co module load OpenMM-PLUMED/1.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM.md index efdc283ade78..04542dd254af 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM.md @@ -6,6 +6,10 @@ hide: OpenMM ====== + +OpenMM is a toolkit for molecular simulation. + +https://openmm.org # Available modules @@ -17,7 +21,7 @@ To start using OpenMM, load one of these modules using a `module load` command l module load OpenMM/8.0.0-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMMTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMMTools.md index d0fe93ce3028..975ade7a771a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMMTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMMTools.md @@ -6,6 +6,10 @@ hide: OpenMMTools =========== + +A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.openmmtools is a Python library layer that sits on top of OpenMM to provide access to a variety of useful tools for building full-featured molecular simulation packages. + +https://github.com/choderalab/openmmtools # Available modules @@ -17,8 +21,15 @@ To start using OpenMMTools, load one of these modules using a `module load` comm module load OpenMMTools/0.20.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |OpenMMTools/0.20.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### OpenMMTools/0.20.0-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +hypothesis-5.20.0, ipython_genutils-0.2.0, jsonschema-3.2.0, jupyter_core-4.6.3, mpiplus-0.0.1, nbformat-5.0.7, OpenMMTools-0.20.0, pyrsistent-0.16.0, sortedcontainers-2.2.2, traitlets-4.3.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMPI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMPI.md index b09392bb8777..968b78893d2f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMPI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMPI.md @@ -6,6 +6,10 @@ hide: OpenMPI ======= + +The Open MPI Project is an open source MPI-3 implementation. + +https://www.open-mpi.org/ # Available modules @@ -17,7 +21,7 @@ To start using OpenMPI, load one of these modules using a `module load` command module load OpenMPI/4.1.6-GCC-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMolcas.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMolcas.md index be6147961b05..b624c5293dbe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMolcas.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMolcas.md @@ -6,6 +6,10 @@ hide: OpenMolcas ========== + +OpenMolcas is a quantum chemistry software package + +https://gitlab.com/Molcas/OpenMolcas # Available modules @@ -17,7 +21,7 @@ To start using OpenMolcas, load one of these modules using a `module load` comma module load OpenMolcas/21.06-iomkl-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPGM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPGM.md index fd677766a916..8299745f77fc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPGM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPGM.md @@ -6,6 +6,10 @@ hide: OpenPGM ======= + +OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility. + +https://code.google.com/p/openpgm/ # Available modules @@ -17,7 +21,7 @@ To start using OpenPGM, load one of these modules using a `module load` command module load OpenPGM/5.2.122-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPIV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPIV.md index 3f665f5c322b..8c1babec18d6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPIV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPIV.md @@ -6,6 +6,10 @@ hide: OpenPIV ======= + +OpenPIV is an open source Particle Image Velocimetry analysis software + +http://www.openpiv.net # Available modules @@ -17,8 +21,15 @@ To start using OpenPIV, load one of these modules using a `module load` command module load OpenPIV/0.21.8-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |OpenPIV/0.21.8-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### OpenPIV/0.21.8-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +OpenPIV-0.21.8, progressbar2-3.51.4, python-utils-2.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSSL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSSL.md index fc62638057dc..17151827a2d0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSSL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSSL.md @@ -6,6 +6,10 @@ hide: OpenSSL ======= + +The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. + +https://www.openssl.org/ # Available modules @@ -17,7 +21,7 @@ To start using OpenSSL, load one of these modules using a `module load` command module load OpenSSL/1.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSees.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSees.md index 784690c9185a..a88f1812d3a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSees.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSees.md @@ -6,6 +6,10 @@ hide: OpenSees ======== + +Open System for Earthquake Engineering Simulation + +https://opensees.berkeley.edu/index.php # Available modules @@ -17,7 +21,7 @@ To start using OpenSees, load one of these modules using a `module load` command module load OpenSees/3.2.0-intel-2020a-Python-3.8.2-parallel ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide-Java.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide-Java.md index 64e0745e070b..c251fc8c6c2b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide-Java.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide-Java.md @@ -6,6 +6,10 @@ hide: OpenSlide-Java ============== + +This is a Java binding to OpenSlide. + +https://github.com/openslide/openslide-java # Available modules @@ -17,7 +21,7 @@ To start using OpenSlide-Java, load one of these modules using a `module load` c module load OpenSlide-Java/0.12.4-GCCcore-12.3.0-Java-17 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide.md index e4662852dbf4..a9634e4b2424 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide.md @@ -6,6 +6,10 @@ hide: OpenSlide ========= + +OpenSlide is a C library that provides a simple interface toread whole-slide images (also known as virtual slides). + +https://openslide.org/ # Available modules @@ -17,7 +21,7 @@ To start using OpenSlide, load one of these modules using a `module load` comman module load OpenSlide/3.4.1-GCCcore-12.3.0-largefiles ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Optuna.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Optuna.md index c3a5a9fc3476..236d167e72eb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Optuna.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Optuna.md @@ -6,6 +6,10 @@ hide: Optuna ====== + +Optuna is an automatic hyperparameter optimization software framework,particularly designed for machine learning. It features an imperative,define-by-run style user API. Thanks to our define-by-run API, the code writtenwith Optuna enjoys high modularity, and the user of Optuna can dynamicallyconstruct the search spaces for the hyperparameters. + +https://optuna.org/ # Available modules @@ -17,8 +21,15 @@ To start using Optuna, load one of these modules using a `module load` command l module load Optuna/3.1.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Optuna/3.1.0-foss-2022a|x|x|x|x|x|x| + + +### Optuna/3.1.0-foss-2022a + +This is a list of extensions included in the module: + +%(namelower)s-3.1.0, alembic-1.9.3, cmaes-0.9.1, colorlog-6.7.0, SQLAlchemy-2.0.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OrthoFinder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OrthoFinder.md index 2aeb88ba2d44..5fb7e311f931 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OrthoFinder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OrthoFinder.md @@ -6,6 +6,10 @@ hide: OrthoFinder =========== + +OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics + +https://github.com/davidemms/OrthoFinder # Available modules @@ -17,7 +21,7 @@ To start using OrthoFinder, load one of these modules using a `module load` comm module load OrthoFinder/2.5.5-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Osi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Osi.md index d7a870294fb6..d3e7200aec6d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Osi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Osi.md @@ -6,6 +6,10 @@ hide: Osi === + +Osi (Open Solver Interface) provides an abstract base class to a generic linearprogramming (LP) solver, along with derived classes for specific solvers. Manyapplications may be able to use the Osi to insulate themselves from a specificLP solver. That is, programs written to the OSI standard may be linked to anysolver with an OSI interface and should produce correct results. The OSI hasbeen significantly extended compared to its first incarnation. Currently, theOSI supports linear programming solvers and has rudimentary support for integerprogramming. + +https://github.com/coin-or/Osi # Available modules @@ -17,7 +21,7 @@ To start using Osi, load one of these modules using a `module load` command like module load Osi/0.108.9-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PASA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PASA.md index 693d83a8819e..8e988b3524ad 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PASA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PASA.md @@ -6,6 +6,10 @@ hide: PASA ==== + +PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments. + +https://github.com/PASApipeline/PASApipeline # Available modules @@ -17,7 +21,7 @@ To start using PASA, load one of these modules using a `module load` command lik module load PASA/2.5.3-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PBGZIP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PBGZIP.md index f2b7775cab27..72cea2464a39 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PBGZIP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PBGZIP.md @@ -6,6 +6,10 @@ hide: PBGZIP ====== + +Parallel Block GZIP + +https://github.com/nh13/pbgzip # Available modules @@ -17,7 +21,7 @@ To start using PBGZIP, load one of these modules using a `module load` command l module load PBGZIP/20160804-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE.md index 7dd123992b34..9eefcc3e9046 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE.md @@ -6,6 +6,10 @@ hide: PCRE ==== + +The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. + +https://www.pcre.org/ # Available modules @@ -17,7 +21,7 @@ To start using PCRE, load one of these modules using a `module load` command lik module load PCRE/8.45-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE2.md index ab101dbf4a3f..d72f3b66f564 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE2.md @@ -6,6 +6,10 @@ hide: PCRE2 ===== + +The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. + +http://www.pcre.org/ # Available modules @@ -17,7 +21,7 @@ To start using PCRE2, load one of these modules using a `module load` command li module load PCRE2/10.42-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PEAR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PEAR.md index a7f479247f1f..3df41ec3f4a8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PEAR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PEAR.md @@ -6,6 +6,10 @@ hide: PEAR ==== + +PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. + +https://cme.h-its.org/exelixis/web/software/pear/ # Available modules @@ -17,7 +21,7 @@ To start using PEAR, load one of these modules using a `module load` command lik module load PEAR/0.9.11-GCCcore-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PETSc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PETSc.md index e2d9d6a2a444..9cd7484a08ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PETSc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PETSc.md @@ -6,6 +6,10 @@ hide: PETSc ===== + +PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. + +https://www.mcs.anl.gov/petsc # Available modules @@ -17,7 +21,7 @@ To start using PETSc, load one of these modules using a `module load` command li module load PETSc/3.18.4-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PHYLIP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PHYLIP.md index 0722d5c1e468..3e095e241394 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PHYLIP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PHYLIP.md @@ -6,6 +6,10 @@ hide: PHYLIP ====== + +PHYLIP is a free package of programs for inferring phylogenies. + +https://evolution.genetics.washington.edu/phylip # Available modules @@ -17,7 +21,7 @@ To start using PHYLIP, load one of these modules using a `module load` command l module load PHYLIP/3.697-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PICRUSt2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PICRUSt2.md index dd67bbaebb27..a3fdc6a9eb6f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PICRUSt2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PICRUSt2.md @@ -6,6 +6,10 @@ hide: PICRUSt2 ======== + +PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a software for predicting functional abundances based only on marker gene sequences. + +https://github.com/picrust/picrust2 # Available modules @@ -17,8 +21,15 @@ To start using PICRUSt2, load one of these modules using a `module load` command module load PICRUSt2/2.5.2-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PICRUSt2/2.5.2-foss-2022b|x|x|x|x|x|x| + + +### PICRUSt2/2.5.2-foss-2022b + +This is a list of extensions included in the module: + +joblib-1.3.1, PICRUSt2-2.5.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PLAMS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PLAMS.md index 1f57e0f1be15..69bd86997999 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PLAMS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PLAMS.md @@ -6,6 +6,10 @@ hide: PLAMS ===== + +The Python Library for Automating Molecular Simulation (PLAMS) is powerful and flexible Python toolinterfaced to the Amsterdam Modeling Suite engines ADF, BAND, DFTB, MOPAC, ReaxFF, and UFF. + +https://www.scm.com/product/plams # Available modules @@ -17,7 +21,7 @@ To start using PLAMS, load one of these modules using a `module load` command li module load PLAMS/1.5.1-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PLINK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PLINK.md index 259161f67730..d1c8a487cb0f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PLINK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PLINK.md @@ -6,6 +6,10 @@ hide: PLINK ===== + +Whole-genome association analysis toolset + +https://www.cog-genomics.org/plink/2.0/ # Available modules @@ -17,7 +21,7 @@ To start using PLINK, load one of these modules using a `module load` command li module load PLINK/2.00a3.1-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md index e3ad6ef46baf..f221e1cea1e9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md @@ -6,6 +6,10 @@ hide: PLUMED ====== + +PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. + +https://www.plumed.org # Available modules @@ -17,7 +21,7 @@ To start using PLUMED, load one of these modules using a `module load` command l module load PLUMED/2.9.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PLY.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PLY.md index 67903685bcd9..2100c0f69660 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PLY.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PLY.md @@ -6,6 +6,10 @@ hide: PLY === + +PLY is yet another implementation of lex and yacc for Python. + +https://www.dabeaz.com/ply/ # Available modules @@ -17,7 +21,7 @@ To start using PLY, load one of these modules using a `module load` command like module load PLY/3.11-GCCcore-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PMIx.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PMIx.md index 74dc5fdc23b4..aa1021faf081 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PMIx.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PMIx.md @@ -6,6 +6,10 @@ hide: PMIx ==== + +Process Management for Exascale EnvironmentsPMI Exascale (PMIx) represents an attempt toprovide an extended version of the PMI standard specifically designedto support clusters up to and including exascale sizes. The overallobjective of the project is not to branch the existing pseudo-standarddefinitions - in fact, PMIx fully supports both of the existing PMI-1and PMI-2 APIs - but rather to (a) augment and extend those APIs toeliminate some current restrictions that impact scalability, and (b)provide a reference implementation of the PMI-server that demonstratesthe desired level of scalability. + +https://pmix.org/ # Available modules @@ -17,7 +21,7 @@ To start using PMIx, load one of these modules using a `module load` command lik module load PMIx/4.2.6-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/POT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/POT.md index 45a9d3101d6f..0ea57342e30b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/POT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/POT.md @@ -6,6 +6,10 @@ hide: POT === + +POT (Python Optimal Transport) is a Python library provide several solvers for optimization problems related to Optimal Transport for signal, image processing and machine learning. + +https://github.com/rflamary/POT # Available modules @@ -17,8 +21,15 @@ To start using POT, load one of these modules using a `module load` command like module load POT/0.9.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |POT/0.9.0-foss-2022a|x|x|x|x|x|x| + + +### POT/0.9.0-foss-2022a + +This is a list of extensions included in the module: + +autograd-1.6.2, POT-0.9.0, pymanopt-2.1.1, versioneer-0.28 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/POV-Ray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/POV-Ray.md index 15107e58127d..e44944cbc0ab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/POV-Ray.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/POV-Ray.md @@ -6,6 +6,10 @@ hide: POV-Ray ======= + +The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports. + +https://www.povray.org/ # Available modules @@ -17,7 +21,7 @@ To start using POV-Ray, load one of these modules using a `module load` command module load POV-Ray/3.7.0.8-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PPanGGOLiN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PPanGGOLiN.md index 75efa2ffe213..ccc7cbcabb32 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PPanGGOLiN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PPanGGOLiN.md @@ -6,6 +6,10 @@ hide: PPanGGOLiN ========== + +PPanGGOLiN is a software suite used to create and manipulate prokaryoticpangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designedto scale up to tens of thousands of genomes. It has the specificity to partition the pangenome usinga statistical approach rather than using fixed thresholds which gives it the ability to work with low-qualitydata such as Metagenomic Assembled Genomes (MAGs) or Single-cell Amplified Genomes (SAGs) thus taking advantageof large scale environmental studies and letting users study the pangenome of uncultivable species. + +https://github.com/labgem/PPanGGOLiN # Available modules @@ -17,8 +21,15 @@ To start using PPanGGOLiN, load one of these modules using a `module load` comma module load PPanGGOLiN/1.1.136-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PPanGGOLiN/1.1.136-foss-2021b|x|x|x|-|x|x| + + +### PPanGGOLiN/1.1.136-foss-2021b + +This is a list of extensions included in the module: + +colorlover-0.3.0, PPanGGOLiN-1.1.136 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PRANK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PRANK.md index 4108c4dbd004..3074ba2bf585 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PRANK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PRANK.md @@ -6,6 +6,10 @@ hide: PRANK ===== + +PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. PRANK is based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. + +http://wasabiapp.org/software/prank/ # Available modules @@ -17,7 +21,7 @@ To start using PRANK, load one of these modules using a `module load` command li module load PRANK/170427-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PRINSEQ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PRINSEQ.md index f7894f6527f5..e6a8827d6fb4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PRINSEQ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PRINSEQ.md @@ -6,6 +6,10 @@ hide: PRINSEQ ======= + +A bioinformatics tool to PRe-process and show INformation of SEQuence data. + +http://prinseq.sourceforge.net # Available modules @@ -17,9 +21,22 @@ To start using PRINSEQ, load one of these modules using a `module load` command module load PRINSEQ/0.20.4-foss-2021b-Perl-5.34.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PRINSEQ/0.20.4-foss-2021b-Perl-5.34.0|x|x|x|-|x|x| |PRINSEQ/0.20.4-foss-2020b-Perl-5.32.0|-|x|x|x|x|-| + + +### PRINSEQ/0.20.4-foss-2021b-Perl-5.34.0 + +This is a list of extensions included in the module: + +Cairo-1.109, Contextual::Return-0.2.1, ExtUtils::Depends-0.8001, ExtUtils::PkgConfig-1.16, Math::Cephes::Matrix-0.5305, Math::MatrixReal-2.13, MIME::Base64-3.15, Pod::Usage-2.0, Statistics::PCA-0.0.1, Text::SimpleTable-2.07 + +### PRINSEQ/0.20.4-foss-2020b-Perl-5.32.0 + +This is a list of extensions included in the module: + +Cairo-1.109, Contextual::Return-0.2.1, ExtUtils::Depends-0.8001, ExtUtils::PkgConfig-1.16, Math::Cephes::Matrix-0.5305, Math::MatrixReal-2.13, MIME::Base64-3.15, Pod::Usage-2.0, Statistics::PCA-0.0.1, Text::SimpleTable-2.07 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PRISMS-PF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PRISMS-PF.md index d17d121a9356..6e92f97cf847 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PRISMS-PF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PRISMS-PF.md @@ -6,6 +6,10 @@ hide: PRISMS-PF ========= + +PRISMS-PF is a powerful, massively parallel finite element code for conducting phase field and other related simulations of microstructural evolution. + +https://prisms-center.github.io/phaseField # Available modules @@ -17,7 +21,7 @@ To start using PRISMS-PF, load one of these modules using a `module load` comman module load PRISMS-PF/2.2-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PROJ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PROJ.md index 665d2edbe38e..656b61a04feb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PROJ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PROJ.md @@ -6,6 +6,10 @@ hide: PROJ ==== + +Program proj is a standard Unix filter function which convertsgeographic longitude and latitude coordinates into cartesian coordinates + +https://proj.org # Available modules @@ -17,7 +21,7 @@ To start using PROJ, load one of these modules using a `module load` command lik module load PROJ/9.2.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pandoc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pandoc.md index 9a0dea0fd8d7..52c49c758ff9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pandoc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pandoc.md @@ -6,6 +6,10 @@ hide: Pandoc ====== + +If you need to convert files from one markup format into another, pandoc is your swiss-army knife + +https://pandoc.org # Available modules @@ -17,7 +21,7 @@ To start using Pandoc, load one of these modules using a `module load` command l module load Pandoc/2.13 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pango.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pango.md index ec12f4964bd5..62e946c1388b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pango.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pango.md @@ -6,6 +6,10 @@ hide: Pango ===== + +Pango is a library for laying out and rendering of text, with an emphasis on internationalization.Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in thecontext of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x. + +https://www.pango.org/ # Available modules @@ -17,7 +21,7 @@ To start using Pango, load one of these modules using a `module load` command li module load Pango/1.50.14-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ParMETIS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ParMETIS.md index 5f0afd4ce0e0..8ced6ce34797 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ParMETIS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ParMETIS.md @@ -6,6 +6,10 @@ hide: ParMETIS ======== + +ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes. + +http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview # Available modules @@ -17,7 +21,7 @@ To start using ParMETIS, load one of these modules using a `module load` command module load ParMETIS/4.0.3-iimpi-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ParMGridGen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ParMGridGen.md index f1b969011037..ee714b7b2664 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ParMGridGen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ParMGridGen.md @@ -6,6 +6,10 @@ hide: ParMGridGen =========== + +ParMGridGen is an MPI-based parallel library that is based on the serial package MGridGen, that implements (serial) algorithms for obtaining a sequence of successive coarse grids that are well-suited for geometric multigrid methods. + +http://www-users.cs.umn.edu/~moulitsa/software.html # Available modules @@ -17,7 +21,7 @@ To start using ParMGridGen, load one of these modules using a `module load` comm module load ParMGridGen/1.0-iimpi-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ParaView.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ParaView.md index 2627650b964b..ab14ecde12c3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ParaView.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ParaView.md @@ -6,6 +6,10 @@ hide: ParaView ======== + +ParaView is a scientific parallel visualizer. + +https://www.paraview.org # Available modules @@ -17,7 +21,7 @@ To start using ParaView, load one of these modules using a `module load` command module load ParaView/5.11.2-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ParmEd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ParmEd.md index 4e8dea431924..566bf803d992 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ParmEd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ParmEd.md @@ -6,6 +6,10 @@ hide: ParmEd ====== + +ParmEd is a general tool for aiding in investigations of biomolecular systems using popular molecular simulation packages, like Amber, CHARMM, and OpenMM written in Python. + +https://parmed.github.io/ParmEd # Available modules @@ -17,7 +21,7 @@ To start using ParmEd, load one of these modules using a `module load` command l module load ParmEd/3.2.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Parsl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Parsl.md index 72924101a650..e74e9f3814eb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Parsl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Parsl.md @@ -6,6 +6,10 @@ hide: Parsl ===== + +Parsl extends parallelism in Python beyond a single computer.You can use Parsl just like Python's parallel executors but across multiplecores and nodes. However, the real power of Parsl is in expressing multi-stepworkflows of functions. Parsl lets you chain functions together and will launcheach function as inputs and computing resources are available. + +https://parsl-project.org/ # Available modules @@ -17,8 +21,15 @@ To start using Parsl, load one of these modules using a `module load` command li module load Parsl/2023.7.17-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Parsl/2023.7.17-GCCcore-11.3.0|x|x|x|x|x|x| + + +### Parsl/2023.7.17-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +globus-sdk-3.25.0, parsl-2023.7.17, PyJWT-2.8.0, setproctitle-1.3.2, tblib-1.7.0, typeguard-2.13.3, types-paramiko-3.2.0.1, types-requests-2.31.0.2, types-six-1.16.21.9, types-urllib3-1.26.25.14, typing-extensions-4.7.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PartitionFinder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PartitionFinder.md index 4cae04a517ec..732fcf1f2506 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PartitionFinder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PartitionFinder.md @@ -6,6 +6,10 @@ hide: PartitionFinder =============== + +PartitionFinder 2 is a Python program for simultaneouslychoosing partitioning schemes and models of molecular evolution for phylogeneticanalyses of DNA, protein, and morphological data. You can PartitionFinder 2before running a phylogenetic analysis, in order to decide how to divide upyour sequence data into separate blocks before analysis, and to simultaneouslyperform model selection on each of those blocks. + +https://www.robertlanfear.com/partitionfinder # Available modules @@ -17,7 +21,7 @@ To start using PartitionFinder, load one of these modules using a `module load` module load PartitionFinder/2.1.1-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Perl-bundle-CPAN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Perl-bundle-CPAN.md index 6fdeb1966896..aec356933664 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Perl-bundle-CPAN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Perl-bundle-CPAN.md @@ -6,6 +6,10 @@ hide: Perl-bundle-CPAN ================ + +A set of common packages from CPAN + +https://www.perl.org/ # Available modules @@ -17,8 +21,15 @@ To start using Perl-bundle-CPAN, load one of these modules using a `module load` module load Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0|x|x|x|x|x|x| + + +### Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.335, App::cpanminus-1.7046, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::COW-0.007, B::Hooks::EndOfScope-0.26, B::Lint-1.20, boolean-0.46, Business::ISBN-3.008, Business::ISBN::Data-20230516.001, Canary::Stability-2013, Capture::Tiny-0.48, Carp::Clan-6.08, Carp::Heavy-1.50, CGI-4.57, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Method::Modifiers-2.15, Class::Singleton-1.6, Class::Tiny-1.008, Class::Trigger-0.15, Class::XSAccessor-1.19, Clone-0.46, Clone::Choose-0.010, common::sense-3.75, Compress::Raw::Zlib-2.204, Config::General-2.65, Config::INI-0.029, Config::MVP-2.200013, Config::MVP::Reader::INI-2.101465, Config::Simple-4.58, Config::Tiny-2.29, Const::Exporter-1.2.2, Const::Fast-0.014, CPAN::Meta::Check-0.017, CPAN::Uploader-0.103018, CPANPLUS-0.9914, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.114, Data::Section-0.200008, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.59, DateTime::Locale-1.38, DateTime::TimeZone-2.60, DateTime::Tiny-1.07, DBD::CSV-0.60, DBD::SQLite-1.72, DBI-1.643, DBIx::Admin::CreateTable-2.11, DBIx::Admin::DSNManager-2.02, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.16, Devel::Cycle-1.12, Devel::FindPerl-0.016, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::Size-0.83, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.030, Email::Date::Format-1.008, Encode-3.19, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter::Declare-0.114, Exporter::Tiny-1.006002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.26, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.70, ExtUtils::ParseXS-3.44, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.16, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.15, File::Next-1.18, File::pushd-1.016, File::Remove-1.61, File::ShareDir-1.118, File::ShareDir::Install-0.14, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.014, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long::Descriptive-0.111, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9726, Graph::ReadWrite-2.10, Hash::Merge-0.302, Hash::Objectify-0.008, Heap-0.80, Hook::LexWrap-0.26, HTML::Entities::Interpolate-1.10, HTML::Form-6.11, HTML::Parser-3.81, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::CookieJar-0.014, HTTP::Cookies-6.10, HTTP::Daemon-6.16, HTTP::Date-6.05, HTTP::Message-6.44, HTTP::Negotiate-6.01, HTTP::Tiny-0.082, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Importer-0.026, Inline-0.86, IO::Compress::Zip-2.204, IO::HTML-1.004, IO::Socket::SSL-2.083, IO::String-1.08, IO::Stringy-2.113, IO::TieCombine-1.005, IO::Tty-1.17, IO::Tty-1.17, IPC::Cmd-1.04, IPC::Run-20220807.0, IPC::Run3-0.048, IPC::System::Simple-1.30, JSON-4.10, JSON::MaybeXS-1.004005, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.59, List::UtilsBy-0.12, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.71, Log::Dispatch::Array-1.005, Log::Dispatchouli-3.002, Log::Handler-0.90, Log::Log4perl-1.57, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.34, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.70, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.884, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-v1.013.1, MIME::Lite-3.033, MIME::Types-2.24, Mixin::Linewise::Readers-0.111, Mock::Quick-1.111, Module::Build-0.4234, Module::Build::Tiny-0.045, Module::Build::XSUtil-0.19, Module::CoreList-5.20230423, Module::Implementation-0.09, Module::Install-1.21, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000038, Module::Path-0.19, Module::Path-0.19, Module::Pluggable-5.2, Module::Runtime-0.016, Module::Runtime::Conflicts-0.003, Moo-2.005005, Moose-2.2203, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.007, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.203, MooseX::Types-0.50, MooseX::Types::Perl-0.101344, Mouse-v2.5.10, Mozilla::CA-20221114, MRO::Compat-0.15, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.15, Net::HTTP-6.22, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.92, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.18, Package::Stash-0.40, Package::Stash::XS-0.30, PadWalker-2.5, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.31, Params::ValidationCompiler-0.31, parent-0.241, Parse::RecDescent-1.967015, Parse::Yapp-1.21, Path::Tiny-0.144, PDF::API2-2.044, Perl::OSType-1.010, Perl::PrereqScanner-1.100, PerlIO::utf8_strict-0.010, Pod::Elemental-0.103006, Pod::Escapes-1.07, Pod::Eventual-0.094003, Pod::LaTeX-0.61, Pod::Man-5.01, Pod::Parser-1.66, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.45, Pod::Weaver-4.019, PPI-1.276, Readonly-2.05, Ref::Util-0.204, Regexp::Common-2017060201, Role::HasMessage-0.007, Role::Identifiable::HasIdent-0.009, Role::Tiny-2.002004, Scalar::Util-1.63, Scalar::Util::Numeric-0.40, Scope::Guard-0.21, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.036, Software::License-0.104003, Specio-0.48, Spiffy-0.46, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.25, strictures-2.000006, String::Errf-0.009, String::Flogger-1.101246, String::Formatter-1.235, String::Print-0.94, String::RewritePrefix-0.009, String::Truncate-1.100603, String::TtyLength-0.03, Sub::Exporter-0.989, Sub::Exporter::ForMethods-0.100055, Sub::Exporter::GlobExporter-0.006, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Info-0.002, Sub::Install-0.929, Sub::Name-0.27, Sub::Quote-2.006008, Sub::Uplevel-0.2800, SVG-2.87, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Linux::Device::CPU-0.7905, Sys::Info::Driver::Unknown-0.79, Sys::Info::Driver::Unknown::Device::CPU-0.79, Template-3.101, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.45, Term::Table-0.016, Term::UI-0.50, Test-1.26, Test2::Plugin::NoWarnings-0.09, Test2::Require::Module-0.000155, Test::Base-0.89, Test::CheckDeps-0.010, Test::ClassAPI-1.07, Test::CleanNamespaces-0.24, Test::Deep-1.204, Test::Differences-0.69, Test::Exception-0.43, Test::FailWarnings-0.008, Test::Fatal-0.017, Test::File-1.993, Test::File::ShareDir::Dist-1.001002, Test::Harness-3.44, Test::LeakTrace-0.17, Test::Memory::Cycle-1.06, Test::More::UTF8-0.05, Test::Most-0.38, Test::Needs-0.002010, Test::NoWarnings-1.06, Test::Object-0.08, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302195, Test::SubCalls-1.10, Test::Sys::Info-0.23, Test::Version-2.09, Test::Warn-0.37, Test::Warnings-0.031, Test::Without::Module-0.21, Test::YAML-1.07, Text::Aligner-0.16, Text::Balanced-2.06, Text::CSV-2.02, Text::CSV_XS-1.50, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::Soundex-3.05, Text::Table-1.135, Text::Table::Manifold-1.03, Text::Template-1.61, Throwable-1.001, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.35, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.31, Type::Tiny-2.004000, Types::Serialiser-1.01, Types::Serialiser-1.01, Unicode::EastAsianWidth-12.0, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, Unix::Processors-2.046, URI-5.19, Variable::Magic-0.63, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::Writer-0.900, XML::XPath-1.48, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.74 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Perl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Perl.md index cf59658f77b9..b93823f92372 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Perl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Perl.md @@ -6,6 +6,10 @@ hide: Perl ==== + +Larry Wall's Practical Extraction and Report Language + +https://www.perl.org/ # Available modules @@ -17,7 +21,7 @@ To start using Perl, load one of these modules using a `module load` command lik module load Perl/5.38.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -37,3 +41,64 @@ module load Perl/5.38.0-GCCcore-13.2.0 |Perl/5.30.0-GCCcore-8.3.0-minimal|x|x|x|x|x|x| |Perl/5.30.0-GCCcore-8.3.0|x|x|x|x|x|x| |Perl/5.28.1-GCCcore-8.2.0|-|x|-|-|-|-| + + +### Perl/5.38.0-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +Carp-1.50, constant-1.33, Data::Dumper-2.183, Exporter-5.77, File::Path-2.18, File::Spec-3.75, Getopt::Long-2.54, IO::File-1.51, Text::ParseWords-3.31, Thread::Queue-3.13, threads-2.21 + +### Perl/5.36.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +Carp-1.50, constant-1.33, Data::Dumper-2.183, Exporter-5.77, File::Path-2.18, File::Spec-3.75, Getopt::Long-2.54, IO::File-1.51, Text::ParseWords-3.31, Thread::Queue-3.13, threads-2.21 + +### Perl/5.36.0-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.334, App::cpanminus-1.7046, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.26, B::Lint-1.20, boolean-0.46, Business::ISBN-3.007, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Tiny-1.008, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.65, Config::INI-0.027, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.28, constant-1.33, CPAN::Meta::Check-0.014, CPANPLUS-0.9914, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper-2.183, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.112, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.58, DateTime::Locale-1.36, DateTime::TimeZone-2.53, DateTime::Tiny-1.07, DBD::CSV-0.59, DBD::SQLite-1.70, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.16, Devel::Cycle-1.12, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::Size-0.83, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.025, Email::Date::Format-1.005, Encode-3.19, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.004000, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.26, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.64, ExtUtils::ParseXS-3.44, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.16, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.15, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.61, File::ShareDir-1.118, File::ShareDir::Install-0.14, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.013, File::Spec-3.75, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.110, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9725, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.10, HTML::Parser-3.78, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.14, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.37, HTTP::Tiny-0.082, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Importer-0.026, Inline-0.86, IO::Compress::Bzip2-2.201, IO::HTML-1.004, IO::Socket::SSL-2.075, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20220807.0, IPC::Run3-0.048, IPC::System::Simple-1.30, JSON-4.09, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.63, List::UtilsBy-0.12, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.023, Log::Handler-0.90, Log::Log4perl-1.56, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.33, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.67, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.879, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-1.013.1, MIME::Lite-3.033, MIME::Types-2.22, Mixin::Linewise::Readers-0.110, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20220820, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Path-0.19, Module::Pluggable-5.2, Module::Runtime-0.016, Module::Runtime::Conflicts-0.003, Moo-2.005004, Moose-2.2201, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.006, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.201, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20211001, MRO::Compat-0.15, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.14, Net::HTTP-6.22, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.92, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.40, Package::Stash::XS-0.30, PadWalker-2.5, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.124, PDF::API2-2.043, Perl::OSType-1.010, PerlIO::utf8_strict-0.009, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094002, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.43, Pod::Weaver-4.018, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.008, Role::Tiny-2.002004, Scalar::Util-1.63, Scalar::Util::Numeric-0.40, Scope::Guard-0.21, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.036, Software::License-0.104002, Specio-0.48, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.25, strictures-2.000006, String::Flogger-1.101245, String::Print-0.94, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.988, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Info-0.002, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.87, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Unknown-0.79, Template-3.101, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.42, Term::Table-0.016, Term::UI-0.50, Test-1.26, Test2::Plugin::NoWarnings-0.09, Test2::Require::Module-0.000145, Test::ClassAPI-1.07, Test::CleanNamespaces-0.24, Test::Deep-1.130, Test::Differences-0.69, Test::Exception-0.43, Test::Fatal-0.016, Test::File::ShareDir::Dist-1.001002, Test::Harness-3.44, Test::LeakTrace-0.17, Test::Memory::Cycle-1.06, Test::More-1.302191, Test::More::UTF8-0.05, Test::Most-0.37, Test::Needs-0.002009, Test::NoWarnings-1.06, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302191, Test::Version-2.09, Test::Warn-0.37, Test::Warnings-0.031, Test::Without::Module-0.20, Text::Aligner-0.16, Text::Balanced-2.06, Text::CSV-2.02, Text::CSV_XS-1.48, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.31, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.61, Thread::Queue-3.13, Throwable-1.000, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.31, Types::Serialiser-1.01, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, URI-5.12, URI::Escape-5.12, Variable::Magic-0.62, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.48, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.34.1-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.334, App::cpanminus-1.7046, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.26, B::Lint-1.20, boolean-0.46, Business::ISBN-3.007, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Tiny-1.008, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.65, Config::INI-0.027, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.28, constant-1.33, CPAN::Meta::Check-0.014, CPANPLUS-0.9914, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper-2.183, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.112, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.58, DateTime::Locale-1.35, DateTime::TimeZone-2.52, DateTime::Tiny-1.07, DBD::CSV-0.59, DBD::SQLite-1.70, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::Cycle-1.12, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::Size-0.83, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.024, Email::Date::Format-1.005, Encode-3.17, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.26, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.64, ExtUtils::ParseXS-3.44, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.16, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.15, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.60, File::ShareDir-1.118, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.013, File::Spec-3.75, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.110, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9725, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.78, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.14, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.36, HTTP::Tiny-0.080, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Importer-0.026, Inline-0.86, IO::Compress::Bzip2-2.106, IO::HTML-1.004, IO::Socket::SSL-2.074, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, IPC::System::Simple-1.30, JSON-4.05, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.62, List::UtilsBy-0.11, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.023, Log::Handler-0.90, Log::Log4perl-1.54, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.33, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.55, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.878, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-1.012.2, MIME::Lite-3.033, MIME::Types-2.22, Mixin::Linewise::Readers-0.110, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20220420, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Path-0.19, Module::Pluggable-5.2, Module::Runtime-0.016, Module::Runtime::Conflicts-0.003, Moo-2.005004, Moose-2.2201, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.201, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20211001, MRO::Compat-0.15, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.13, Net::HTTP-6.22, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.92, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.40, Package::Stash::XS-0.29, PadWalker-2.5, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.122, PDF::API2-2.043, Perl::OSType-1.010, PerlIO::utf8_strict-0.009, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094002, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.43, Pod::Weaver-4.018, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.002004, Scalar::Util-1.56, Scalar::Util::Numeric-0.40, Scope::Guard-0.21, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.032, Software::License-0.104001, Specio-0.47, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.25, strictures-2.000006, String::Flogger-1.101245, String::Print-0.94, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.988, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Info-0.002, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.86, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Unknown-0.79, Template-3.100, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.42, Term::Table-0.016, Term::UI-0.50, Test-1.26, Test2::Plugin::NoWarnings-0.09, Test2::Require::Module-0.000145, Test::ClassAPI-1.07, Test::CleanNamespaces-0.24, Test::Deep-1.130, Test::Differences-0.69, Test::Exception-0.43, Test::Fatal-0.016, Test::File::ShareDir::Dist-1.001002, Test::Harness-3.44, Test::LeakTrace-0.17, Test::Memory::Cycle-1.06, Test::More-1.302190, Test::More::UTF8-0.05, Test::Most-0.37, Test::Needs-0.002009, Test::NoWarnings-1.06, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302190, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.031, Test::Without::Module-0.20, Text::Aligner-0.16, Text::Balanced-2.04, Text::CSV-2.01, Text::CSV_XS-1.47, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.31, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.60, Thread::Queue-3.13, Throwable-1.000, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.31, Types::Serialiser-1.01, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, URI-5.10, URI::Escape-5.10, Variable::Magic-0.62, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.34.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.334, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.006, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.027, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.26, constant-1.33, CPANPLUS-0.9910, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper-2.183, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.112, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.54, DateTime::Locale-1.32, DateTime::TimeZone-2.47, DateTime::Tiny-1.07, DBD::CSV-0.58, DBD::SQLite-1.70, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.024, Email::Date::Format-1.005, Encode-3.11, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.23, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.62, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.14, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.60, File::ShareDir-1.118, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.109, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9722, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap::Fibonacci-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.76, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.12, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.33, HTTP::Tiny-0.078, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::HTML-1.004, IO::Socket::SSL-2.071, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, JSON-4.03, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.56, List::UtilsBy-0.11, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.023, Log::Handler-0.90, Log::Log4perl-1.54, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.33, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.55, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.874, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-1.012.2, MIME::Lite-3.033, MIME::Types-2.21, Mixin::Linewise::Readers-0.110, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20210723, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.005004, Moose-2.2015, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.201, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20200520, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.13, Net::HTTP-6.21, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.90, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.39, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.118, PDF::API2-2.041, Perl::OSType-1.010, PerlIO::utf8_strict-0.008, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094002, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Parser-1.65, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.43, Pod::Weaver-4.018, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.002004, Scalar::Util-1.56, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.032, Software::License-0.104001, Specio-0.47, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::Print-0.94, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.988, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.86, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Unknown-0.79, Template-3.009, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.42, Term::UI-0.48, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.68, Test::Exception-0.43, Test::Fatal-0.016, Test::Harness-3.42, Test::LeakTrace-0.17, Test::More-1.302186, Test::Most-0.37, Test::NoWarnings-1.06, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302186, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.031, Text::Aligner-0.16, Text::Balanced-2.04, Text::CSV-2.01, Text::CSV_XS-1.46, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.59, Thread::Queue-3.13, Throwable-1.000, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.30, Types::Serialiser-1.01, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, URI-5.09, URI::Escape-5.09, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.32.1-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.333, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.86, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.006, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.26, constant-1.33, CPANPLUS-0.9910, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.54, DateTime::Locale-1.31, DateTime::TimeZone-2.47, DateTime::Tiny-1.07, DBD::CSV-0.58, DBD::SQLite-1.66, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.017, Email::Date::Format-1.005, Encode-3.08, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.62, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.14, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.60, File::ShareDir-1.118, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2311, File::Which-1.24, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.109, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9721, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap::Fibonacci-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.76, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.12, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.29, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::Compress::Bzip2-2.102, IO::HTML-1.004, IO::Socket::SSL-2.070, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, JSON-4.03, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.18, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.56, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.022, Log::Handler-0.90, Log::Log4perl-1.54, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.53, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.874, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Lite-3.031, MIME::Types-2.20, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20210420, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.005004, Moose-2.2015, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20200520, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.13, Net::HTTP-6.21, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.90, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.39, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.118, PDF::API2-2.040, Perl::OSType-1.010, PerlIO::utf8_strict-0.008, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.42, Pod::Weaver-4.017, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.002004, Scalar::Util-1.56, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.031, Software::License-0.103014, Specio-0.47, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.85, Switch-2.17, Template-3.009, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.37, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.67, Test::Exception-0.43, Test::Fatal-0.016, Test::Harness-3.42, Test::LeakTrace-0.17, Test::More-1.302183, Test::Most-0.37, Test::NoWarnings-1.04, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302183, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.030, Text::Aligner-0.16, Text::Balanced-2.04, Text::CSV-2.00, Text::CSV_XS-1.46, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.59, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.30, Types::Serialiser-1.01, UNIVERSAL::moniker-0.08, URI-5.09, URI::Escape-5.09, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.32.0-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.1903, aliased-0.34, AnyEvent-7.17, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.86, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.005, Business::ISBN::Data-20191107, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Simple-4.58, Config::Tiny-2.24, constant-1.33, CPANPLUS-0.9908, Crypt::DES-2.07, Crypt::Rijndael-1.14, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.52, DateTime::Locale-1.26, DateTime::TimeZone-2.39, DateTime::Tiny-1.07, DBD::CSV-0.55, DBD::SQLite-1.64, DBI-1.643, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.015, Email::Date::Format-1.005, Encode-3.07, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280234, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.46, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.18, File::Path-2.17, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.105, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.302, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.08, HTTP::Daemon-6.12, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.25, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::Compress::Bzip2-2.093, IO::File-1.42, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.42, IO::Socket-1.42, IO::Socket::SSL-2.068, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.14, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, JSON-4.02, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.16, List::MoreUtils-0.428, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.55, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.021, Log::Handler-0.90, Log::Log4perl-1.50, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.09, LWP::Simple-6.47, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.874, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.031, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20200717, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.72, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.004000, Moose-2.2013, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20200520, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.19, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.88, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.114, PDF::API2-2.037, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.40, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.001004, Scalar::List::Utils-1.55, Scalar::Util-1.55, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.030, Software::License-0.103014, Specio-0.46, SQL::Abstract-1.87, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.85, Switch-2.17, Template-3.009, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.36, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.67, Test::Exception-0.43, Test::Fatal-0.016, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302177, Test::Most-0.37, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302177, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.030, Text::Aligner-0.16, Text::Balanced-2.03, Text::CSV-2.00, Text::CSV_XS-1.44, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.59, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, Types::Serialiser-1.0, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-1.76, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.30.2-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.111, Algorithm::Diff-1.1903, aliased-0.34, AnyEvent-7.17, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.86, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.005, Business::ISBN::Data-20191107, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.14, Clone-0.43, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Simple-4.58, Config::Tiny-2.24, constant-1.33, CPANPLUS-0.9906, Crypt::DES-2.07, Crypt::Rijndael-1.14, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.224, Date::Handler-1.2, Date::Language-2.32, DateTime-1.52, DateTime::Locale-1.25, DateTime::TimeZone-2.38, DateTime::Tiny-1.07, DBD::CSV-0.54, DBD::SQLite-1.64, DBI-1.643, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.014, Email::Date::Format-1.005, Encode-3.04, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002001, ExtUtils::CBuilder-0.280234, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.44, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.18, File::Path-2.16, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.30, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.51, Getopt::Long::Descriptive-0.105, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.300, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.08, HTTP::Daemon-6.06, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.22, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::Compress::Bzip2-2.096, IO::File-1.42, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.42, IO::Socket-1.42, IO::Socket::SSL-2.067, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.14, IPC::Cmd-1.04, IPC::Run-20180523.0, IPC::Run3-0.048, JSON-4.02, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.16, List::MoreUtils-0.428, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.54, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.69, Log::Dispatchouli-2.019, Log::Handler-0.88, Log::Log4perl-1.49, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.07, LWP::Simple-6.43, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::VecStat-0.08, MCE::Mutex-1.866, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.031, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20200314, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.70, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.003006, Moose-2.2012, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.9, Mozilla::CA-20180117, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.19, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.88, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.112, PDF::API2-2.037, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.40, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.001004, Scalar::List::Utils-1.54, Scalar::Util-1.54, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.029, Software::License-0.103014, Specio-0.46, SQL::Abstract-1.86, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.84, Switch-2.17, Template-3.007, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.36, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.67, Test::Exception-0.43, Test::Fatal-0.014, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302172, Test::Most-0.35, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.10, Test::RequiresInternet-0.05, Test::Simple-1.302172, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.029, Text::Aligner-0.13, Text::Balanced-2.03, Text::CSV-2.00, Text::CSV_XS-1.41, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.133, Text::Template-1.58, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9760, Time::Local-1.30, Time::Piece-1.34, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, Types::Serialiser-1.0, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-3.31, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.30.0-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.111, Algorithm::Diff-1.1903, aliased-0.34, AnyData-0.12, AnyEvent-7.16, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.80, Array::Transpose-0.06, Array::Utils-0.5, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Bundle::BioPerl-2.1.9, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.07, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.14, Clone-0.43, Clone::Choose-0.010, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Simple-4.58, Config::Tiny-2.24, constant-1.33, CPANPLUS-0.9178, Crypt::DES-2.07, Crypt::Rijndael-1.14, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.224, Date::Handler-1.2, Date::Language-2.30, DateTime-1.51, DateTime::Locale-1.24, DateTime::TimeZone-2.37, DateTime::Tiny-1.07, DBD::AnyData-0.110, DBD::SQLite-1.64, DBI-1.642, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.13, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.012, Email::Date::Format-1.005, Encode-3.02, Encode::Locale-1.05, Error-0.17028, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.73, Exporter::Declare-0.114, Exporter::Tiny-1.002001, ExtUtils::CBuilder-0.280234, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.44, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.18, File::Path-2.16, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.28, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.51, Getopt::Long::Descriptive-0.104, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.300, HTML::Entities::Interpolate-1.10, HTML::Form-6.04, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.04, HTTP::Daemon-6.06, HTTP::Date-6.02, HTTP::Negotiate-6.01, HTTP::Request-6.18, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::File-1.42, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.42, IO::Socket-1.42, IO::Socket::SSL-2.066, IO::String-1.08, IO::Stringy-2.111, IO::Tty-1.12, IPC::Cmd-1.04, IPC::Run-20180523.0, IPC::Run3-0.048, JSON-4.02, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.15, List::MoreUtils-0.428, List::SomeUtils-0.56, List::Util-1.54, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.68, Log::Dispatchouli-2.019, Log::Handler-0.88, Log::Log4perl-1.49, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.07, LWP::Simple-6.39, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::VecStat-0.08, MCE::Mutex-1.866, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.030, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4229, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20200220, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.70, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.003004, Moose-2.2011, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.9, Mozilla::CA-20180117, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.19, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.88, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.108, PDF::API2-2.035, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103004, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.40, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.000008, Scalar::List::Utils-1.52, Scalar::Util-1.54, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.029, Software::License-0.103014, Specio-0.44, SQL::Abstract-1.86, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.007, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.21, Sub::Quote-2.006003, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.84, Switch-2.17, Template-2.29, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.36, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.128, Test::Differences-0.67, Test::Exception-0.43, Test::Exception::LessClever-0.009, Test::Fatal-0.014, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302171, Test::Most-0.35, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.10, Test::RequiresInternet-0.05, Test::Simple-1.302168, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.026, Text::Aligner-0.13, Text::Balanced-2.03, Text::CSV-2.00, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.133, Text::Template-1.57, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9760, Time::Local-1.30, Time::Piece-1.33, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-3.31, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.44, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.29, YAML::Tiny-1.73 + +### Perl/5.28.1-GCCcore-8.2.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.111, Algorithm::Diff-1.1903, aliased-0.34, AnyData-0.12, AnyEvent-7.15, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.80, Array::Transpose-0.06, Array::Utils-0.5, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Bundle::BioPerl-2.1.9, Canary::Stability-2012, Capture::Tiny-0.48, Carp-1.50, Carp-1.50, Carp::Clan-6.07, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.32, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.14, Clone-0.41, Clone::Choose-0.010, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Tiny-2.23, constant-1.33, CPANPLUS-0.9176, Crypt::DES-2.07, Crypt::Rijndael-1.13, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.224, Date::Handler-1.2, Date::Language-2.30, DateTime-1.50, DateTime::Locale-1.23, DateTime::TimeZone-2.23, DateTime::Tiny-1.07, DBD::AnyData-0.110, DBD::SQLite-1.62, DBI-1.642, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.13, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.03, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.012, Email::Date::Format-1.005, Encode-3.01, Encode::Locale-1.05, Error-0.17027, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.73, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002001, ExtUtils::CBuilder-0.280231, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.19, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.36, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.44, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.16, File::Path-2.16, File::Path-2.16, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.26, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Spec-3.75, File::Temp-0.2309, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.50, Getopt::Long::Descriptive-0.103, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.300, HTML::Entities::Interpolate-1.10, HTML::Form-6.03, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.04, HTTP::Daemon-6.01, HTTP::Date-6.02, HTTP::Negotiate-6.01, HTTP::Request-6.18, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, IO::File-1.39, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.39, IO::Socket-1.39, IO::Socket::SSL-2.066, IO::String-1.08, IO::Stringy-2.111, IO::Tty-1.12, IPC::Cmd-1.02, IPC::Run-20180523.0, IPC::Run3-0.048, JSON-4.02, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.15, List::MoreUtils-0.428, List::SomeUtils-0.56, List::Util-1.54, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.68, Log::Dispatchouli-2.016, Log::Handler-0.88, Log::Log4perl-1.49, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.02, LWP::Simple-6.37, Mail::Util-2.20, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::VecStat-0.08, MCE::Mutex-1.866, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.030, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4224, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20190524, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.68, Module::Metadata-1.000036, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.003004, Moose-2.2011, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.10, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.6, MRO::Compat-0.13, namespace::autoclean-0.28, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.18, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.85, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.237, Parse::RecDescent-1.967015, Path::Tiny-0.108, PDF::API2-2.033, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103004, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.12, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.38, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.000006, Scalar::List::Utils-1.50, Scalar::Util-1.50, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.029, Software::License-0.103014, Specio-0.43, SQL::Abstract-1.86, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.007, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.21, Sub::Quote-2.006003, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.84, Switch-2.17, Template-2.28, Template::Plugin::Number::Format-1.06, Term::Encoding-0.02, Term::ReadKey-2.38, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.128, Test::Differences-0.67, Test::Exception-0.43, Test::Exception::LessClever-0.009, Test::Fatal-0.014, Test::Harness-3.42, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302162, Test::Most-0.35, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.10, Test::Simple-1.302162, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.026, Text::Aligner-0.13, Text::Balanced-2.03, Text::CSV-1.99, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.133, Text::Template-1.55, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::Local-1.28, Time::Piece-1.33, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-3.31, version-0.9924, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.44_01, XML::RegExp-0.04, XML::SAX-1.00, XML::SAX::Base-1.09, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.29, YAML::Tiny-1.73 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Phenoflow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Phenoflow.md index f002e28ee3aa..44d6ef19891d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Phenoflow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Phenoflow.md @@ -6,6 +6,10 @@ hide: Phenoflow ========= + +R package offering functionality for the advanced analysis of microbial flow cytometry data + +https://github.com/rprops/Phenoflow_package # Available modules @@ -17,7 +21,7 @@ To start using Phenoflow, load one of these modules using a `module load` comman module load Phenoflow/1.1.2-20200917-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PhyloPhlAn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PhyloPhlAn.md index 142d482581d0..58b3012dc413 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PhyloPhlAn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PhyloPhlAn.md @@ -6,6 +6,10 @@ hide: PhyloPhlAn ========== + +PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling ofgenomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use methodfor large-scale microbial genome characterization and phylogenetic analysisat multiple levels of resolution. + +https://github.com/biobakery/phylophlan # Available modules @@ -17,7 +21,7 @@ To start using PhyloPhlAn, load one of these modules using a `module load` comma module load PhyloPhlAn/3.0.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow-SIMD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow-SIMD.md index 9ac969db5166..4a7e01809a66 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow-SIMD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow-SIMD.md @@ -6,6 +6,10 @@ hide: Pillow-SIMD =========== + +Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. + +https://github.com/uploadcare/pillow-simd # Available modules @@ -17,7 +21,7 @@ To start using Pillow-SIMD, load one of these modules using a `module load` comm module load Pillow-SIMD/9.5.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow.md index 51b31caac3fe..9a67751ee13b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow.md @@ -6,6 +6,10 @@ hide: Pillow ====== + +Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. + +https://pillow.readthedocs.org/ # Available modules @@ -17,7 +21,7 @@ To start using Pillow, load one of these modules using a `module load` command l module load Pillow/10.2.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pilon.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pilon.md index ddc0ab1ad84d..12fe17e8f737 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pilon.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pilon.md @@ -6,6 +6,10 @@ hide: Pilon ===== + +Pilon is an automated genome assembly improvement and variant detection tool + +https://github.com/broadinstitute/pilon # Available modules @@ -17,7 +21,7 @@ To start using Pilon, load one of these modules using a `module load` command li module load Pilon/1.23-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pint.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pint.md index 8fd211da1880..26fae9f2324e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pint.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pint.md @@ -6,6 +6,10 @@ hide: Pint ==== + +Pint is a Python package to define, operate andmanipulate physical quantities: the product of a numerical value and aunit of measurement. It allows arithmetic operations between them andconversions from and to different units. + +https://github.com/hgrecco/pint # Available modules @@ -17,7 +21,7 @@ To start using Pint, load one of these modules using a `module load` command lik module load Pint/0.22-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PnetCDF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PnetCDF.md index a1cea0f8a405..5c6cd3b520ed 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PnetCDF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PnetCDF.md @@ -6,6 +6,10 @@ hide: PnetCDF ======= + +Parallel netCDF: A Parallel I/O Library for NetCDF File Access + +https://parallel-netcdf.github.io/ # Available modules @@ -17,7 +21,7 @@ To start using PnetCDF, load one of these modules using a `module load` command module load PnetCDF/1.12.3-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Porechop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Porechop.md index 8c67cc19ef4d..99de74cfea79 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Porechop.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Porechop.md @@ -6,6 +6,10 @@ hide: Porechop ======== + +Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity + +https://github.com/rrwick/Porechop # Available modules @@ -17,7 +21,7 @@ To start using Porechop, load one of these modules using a `module load` command module load Porechop/0.2.4-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PostgreSQL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PostgreSQL.md index a5cccd2d4e4c..28e7e12c4fdb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PostgreSQL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PostgreSQL.md @@ -6,6 +6,10 @@ hide: PostgreSQL ========== + +PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation. + +https://www.postgresql.org/ # Available modules @@ -17,7 +21,7 @@ To start using PostgreSQL, load one of these modules using a `module load` comma module load PostgreSQL/16.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Primer3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Primer3.md index b816f94a77d3..ad1e9c5f73b5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Primer3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Primer3.md @@ -6,6 +6,10 @@ hide: Primer3 ======= + +Primer3 is a widely used program for designing PCR primers (PCR = 'Polymerase Chain Reaction'). PCR is an essential and ubiquitous tool in genetics and molecular biology. Primer3 can also design hybridization probes and sequencing primers. + +https://primer3.org/ # Available modules @@ -17,7 +21,7 @@ To start using Primer3, load one of these modules using a `module load` command module load Primer3/2.5.0-GCC-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ProBiS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ProBiS.md index ae41563708c8..085f892803f7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ProBiS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ProBiS.md @@ -6,6 +6,10 @@ hide: ProBiS ====== + +ProBiS algorithm aligns and superimposes complete protein surfaces,surface motifs, or protein binding sites. + +http://insilab.org/probis-algorithm # Available modules @@ -17,7 +21,7 @@ To start using ProBiS, load one of these modules using a `module load` command l module load ProBiS/20230403-gompi-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ProtHint.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ProtHint.md index 4373c36c5d14..d250557af071 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ProtHint.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ProtHint.md @@ -6,6 +6,10 @@ hide: ProtHint ======== + +ProtHint is a pipeline for predicting and scoring hints (in the form of introns, start and stop codons) in the genome of interest by mapping and spliced aligning predicted genes to a database of reference protein sequences. + +https://github.com/gatech-genemark/ProtHint # Available modules @@ -17,7 +21,7 @@ To start using ProtHint, load one of these modules using a `module load` command module load ProtHint/2.6.0-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PsiCLASS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PsiCLASS.md index 858991235fcd..8ae071571be8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PsiCLASS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PsiCLASS.md @@ -6,6 +6,10 @@ hide: PsiCLASS ======== + +PsiCLASS is a reference-based transcriptome assembler for single or multiple RNA-seq samples. + +https://github.com/splicebox/PsiCLASS # Available modules @@ -17,7 +21,7 @@ To start using PsiCLASS, load one of these modules using a `module load` command module load PsiCLASS/1.0.3-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PuLP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PuLP.md index 395d7e0548cf..001bf622df1c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PuLP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PuLP.md @@ -6,6 +6,10 @@ hide: PuLP ==== + +PuLP is an LP modeler written in Python. PuLP can generate MPS or LP files andcall GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP tosolve linear problems. + +https://github.com/coin-or/pulp # Available modules @@ -17,7 +21,7 @@ To start using PuLP, load one of these modules using a `module load` command lik module load PuLP/2.8.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyBerny.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyBerny.md index f6e9d97f0c4e..b9d871db20d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyBerny.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyBerny.md @@ -6,6 +6,10 @@ hide: PyBerny ======= + +PyBerny is an optimizer of molecular geometries with respect to the total energy,using nuclear gradient information. + +https://github.com/jhrmnn/pyberny # Available modules @@ -17,10 +21,23 @@ To start using PyBerny, load one of these modules using a `module load` command module load PyBerny/0.6.3-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyBerny/0.6.3-foss-2022b|x|x|x|x|x|x| |PyBerny/0.6.3-foss-2022a|-|x|x|x|x|x| |PyBerny/0.6.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### PyBerny/0.6.3-foss-2022b + +This is a list of extensions included in the module: + +pyberny-0.6.3 + +### PyBerny/0.6.3-foss-2022a + +This is a list of extensions included in the module: + +pyberny-0.6.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCairo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCairo.md index a4c77f12401a..9745b575d306 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCairo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCairo.md @@ -6,6 +6,10 @@ hide: PyCairo ======= + +Python bindings for the cairo library + +https://pycairo.readthedocs.io/ # Available modules @@ -17,7 +21,7 @@ To start using PyCairo, load one of these modules using a `module load` command module load PyCairo/1.21.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCalib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCalib.md index cda8e3f3cc13..2b7662a0a31b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCalib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCalib.md @@ -6,6 +6,10 @@ hide: PyCalib ======= + +Python library for classifier calibration + +https://github.com/classifier-calibration/PyCalib # Available modules @@ -17,7 +21,7 @@ To start using PyCalib, load one of these modules using a `module load` command module load PyCalib/20230531-gfbf-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCheMPS2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCheMPS2.md index 1f6958c250e8..85630d37e2ae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCheMPS2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCheMPS2.md @@ -6,6 +6,10 @@ hide: PyCheMPS2 ========= + +PyCheMPS2 is a python interface to CheMPS2, for compilation withoutMPI. CheMPS2 is a scientific library which contains a spin-adaptedimplementation of the density matrix renormalization group (DMRG)for ab initio quantum chemistry. + +https://sebwouters.github.io/CheMPS2 # Available modules @@ -17,9 +21,22 @@ To start using PyCheMPS2, load one of these modules using a `module load` comman module load PyCheMPS2/1.8.12-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyCheMPS2/1.8.12-foss-2022b|x|x|x|x|x|x| |PyCheMPS2/1.8.12-foss-2022a|-|x|x|x|x|x| + + +### PyCheMPS2/1.8.12-foss-2022b + +This is a list of extensions included in the module: + +PyCheMPS2-1.8.12 + +### PyCheMPS2/1.8.12-foss-2022a + +This is a list of extensions included in the module: + +PyCheMPS2-1.8.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyFoam.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyFoam.md index 3bc77b8e63a0..2b2aae59f95f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyFoam.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyFoam.md @@ -6,6 +6,10 @@ hide: PyFoam ====== + +A Python library to control OpenFOAM-runs and manipulate OpenFOAM-data. + +http://openfoamwiki.net/index.php/Contrib/PyFoam # Available modules @@ -17,7 +21,7 @@ To start using PyFoam, load one of these modules using a `module load` command l module load PyFoam/2020.5-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyGEOS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyGEOS.md index cf7f5e6fe703..73e5b71ae390 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyGEOS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyGEOS.md @@ -6,6 +6,10 @@ hide: PyGEOS ====== + +PyGEOS is a C/Python library with vectorized geometry functions. The geometry operations are done in the open-source geometry library GEOS. PyGEOS wraps these operations in NumPy ufuncs providing a performance improvement when operating on arrays of geometries. + +https://pygeos.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using PyGEOS, load one of these modules using a `module load` command l module load PyGEOS/0.8-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyGObject.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyGObject.md index ce271ae9f1d0..a9799ad6dfca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyGObject.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyGObject.md @@ -6,6 +6,10 @@ hide: PyGObject ========= + +PyGObject is a Python package which provides bindings for GObject basedlibraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more. + +https://pygobject.readthedocs.io/ # Available modules @@ -17,7 +21,7 @@ To start using PyGObject, load one of these modules using a `module load` comman module load PyGObject/3.42.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyInstaller.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyInstaller.md index 7edc64ae758b..af3fdeb51737 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyInstaller.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyInstaller.md @@ -6,6 +6,10 @@ hide: PyInstaller =========== + +PyInstaller bundles a Python application and all its dependencies into a single package. The user can run the packaged app without installing a Python interpreter or any modules. + +https://pyinstaller.org/en/stable/ # Available modules @@ -17,8 +21,15 @@ To start using PyInstaller, load one of these modules using a `module load` comm module load PyInstaller/6.3.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyInstaller/6.3.0-GCCcore-12.3.0|x|x|x|x|x|x| + + +### PyInstaller/6.3.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +altgraph-0.17.4, packaging-23.2, PyInstaller-6.3.0, pyinstaller-hooks-contrib-2023.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyKeOps.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyKeOps.md index 1bd68f702683..6fed069fc2ef 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyKeOps.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyKeOps.md @@ -6,6 +6,10 @@ hide: PyKeOps ======= + +PyKeOps contains the python bindings (numpy and pytorch) for the cpp/cuda library KeOps. + +https://www.kernel-operations.io/keops/python # Available modules @@ -17,8 +21,15 @@ To start using PyKeOps, load one of these modules using a `module load` command module load PyKeOps/2.0-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyKeOps/2.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### PyKeOps/2.0-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +dill-0.3.5.1, keopscore-2.0, multiprocess-0.70.13, pykeops-2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC.md index 22b928372af9..8840f3bae309 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC.md @@ -6,6 +6,10 @@ hide: PyMC ==== + +PyMC is a probabilistic programming library for Python that allows users to build Bayesian models with a simple Python API and fit them using Markov chain Monte Carlo (MCMC) methods. + +https://www.pymc.io # Available modules @@ -17,8 +21,15 @@ To start using PyMC, load one of these modules using a `module load` command lik module load PyMC/5.9.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyMC/5.9.0-foss-2023a|x|x|x|x|x|x| + + +### PyMC/5.9.0-foss-2023a + +This is a list of extensions included in the module: + +cachetools-5.3.1, fastprogress-1.0.3, pymc-5.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC3.md index 4752c7798667..2684b0fca0ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC3.md @@ -6,6 +6,10 @@ hide: PyMC3 ===== + +Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano + +https://docs.pymc.io/ # Available modules @@ -17,7 +21,7 @@ To start using PyMC3, load one of these modules using a `module load` command li module load PyMC3/3.11.1-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,34 @@ module load PyMC3/3.11.1-intel-2021b |PyMC3/3.11.1-fosscuda-2020b|-|-|-|-|x|-| |PyMC3/3.8-intel-2019b-Python-3.7.4|-|-|x|-|x|x| |PyMC3/3.8-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### PyMC3/3.11.1-intel-2021b + +This is a list of extensions included in the module: + +fastprogress-1.0.0, patsy-0.5.2, pymc3-3.11.1 + +### PyMC3/3.11.1-intel-2020b + +This is a list of extensions included in the module: + +arviz-0.11.1, dill-0.3.3, fastprogress-1.0.0, patsy-0.5.1, pymc3-3.11.1, typing_extensions-3.7.4.3 + +### PyMC3/3.11.1-fosscuda-2020b + +This is a list of extensions included in the module: + +arviz-0.11.1, dill-0.3.3, fastprogress-1.0.0, patsy-0.5.1, pymc3-3.11.1, typing_extensions-3.7.4.3 + +### PyMC3/3.8-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +arviz-0.7.0, patsy-0.5.1, pymc3-3.8, xarray-0.15.1 + +### PyMC3/3.8-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +arviz-0.7.0, patsy-0.5.1, pymc3-3.8, xarray-0.15.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMDE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMDE.md index 9eedf2c4cd5a..5d1e49a7fae4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMDE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMDE.md @@ -6,6 +6,10 @@ hide: PyMDE ===== + +PyMDE is a Python library for computing vector embeddings of items, such as images, biological cells,nodes in a network, or any other type of abstract object. + +https://pymde.org # Available modules @@ -17,9 +21,22 @@ To start using PyMDE, load one of these modules using a `module load` command li module load PyMDE/0.1.18-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyMDE/0.1.18-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| |PyMDE/0.1.18-foss-2022a|x|x|x|x|x|x| + + +### PyMDE/0.1.18-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +pymde-0.1.18, pynndescent-0.5.11 + +### PyMDE/0.1.18-foss-2022a + +This is a list of extensions included in the module: + +pymde-0.1.18, pynndescent-0.5.11 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMOL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMOL.md index 250f883f1a65..937d702262bc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMOL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMOL.md @@ -6,6 +6,10 @@ hide: PyMOL ===== + +PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories.It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone! + +https://github.com/schrodinger/pymol-open-source # Available modules @@ -17,8 +21,15 @@ To start using PyMOL, load one of these modules using a `module load` command li module load PyMOL/2.5.0-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyMOL/2.5.0-foss-2020b|x|x|x|x|x|x| + + +### PyMOL/2.5.0-foss-2020b + +This is a list of extensions included in the module: + +Pmw-2.0.1, PyMOL-2.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOD.md index d5cb7e203a8f..f7a9d76db4d5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOD.md @@ -6,6 +6,10 @@ hide: PyOD ==== + +PyOD is a comprehensive and scalable Python toolkit for detecting outlying objects in multivariate data. + +https://pyod.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using PyOD, load one of these modules using a `module load` command lik module load PyOD/0.8.7-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenCL.md index 258e8e61dd99..167000f1710e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenCL.md @@ -6,6 +6,10 @@ hide: PyOpenCL ======== + +PyOpenCL lets you access GPUs and other massively parallel compute devices from Python. + +https://mathema.tician.de/software/pyopencl/ # Available modules @@ -17,7 +21,7 @@ To start using PyOpenCL, load one of these modules using a `module load` command module load PyOpenCL/2023.1.4-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,34 @@ module load PyOpenCL/2023.1.4-foss-2023a |PyOpenCL/2023.1.4-foss-2022a|x|x|x|x|x|x| |PyOpenCL/2021.2.13-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-| |PyOpenCL/2021.1.2-foss-2020b|-|x|x|x|x|x| + + +### PyOpenCL/2023.1.4-foss-2023a + +This is a list of extensions included in the module: + +pyopencl-2023.1.4, pytools-2023.1.1 + +### PyOpenCL/2023.1.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +appdirs-1.4.4, pyopencl-2023.1.4, pytools-2023.1.1 + +### PyOpenCL/2023.1.4-foss-2022a + +This is a list of extensions included in the module: + +appdirs-1.4.4, pyopencl-2023.1.4, pytools-2023.1.1 + +### PyOpenCL/2021.2.13-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +appdirs-1.4.4, pyopencl-2021.2.13, pytools-2021.2.9 + +### PyOpenCL/2021.1.2-foss-2020b + +This is a list of extensions included in the module: + +appdirs-1.4.4, pyopencl-2021.1.2, pytools-2021.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenGL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenGL.md index b241cbede082..d7d99cc36e4e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenGL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenGL.md @@ -6,6 +6,10 @@ hide: PyOpenGL ======== + +PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs. + +http://pyopengl.sourceforge.net # Available modules @@ -17,7 +21,7 @@ To start using PyOpenGL, load one of these modules using a `module load` command module load PyOpenGL/3.1.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,16 @@ module load PyOpenGL/3.1.7-GCCcore-12.3.0 |PyOpenGL/3.1.6-GCCcore-11.2.0|x|x|x|-|x|x| |PyOpenGL/3.1.5-GCCcore-10.3.0|-|x|x|-|x|x| |PyOpenGL/3.1.5-GCCcore-10.2.0|-|x|x|x|x|x| + + +### PyOpenGL/3.1.7-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +PyOpenGL-3.1.7 + +### PyOpenGL/3.1.6-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +PyOpenGL-3.1.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyPy.md index b1d4313bd564..096f433636af 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyPy.md @@ -6,6 +6,10 @@ hide: PyPy ==== + +A fast, compliant alternative implementation of Python + +https://www.pypy.org # Available modules @@ -17,7 +21,7 @@ To start using PyPy, load one of these modules using a `module load` command lik module load PyPy/7.3.12-3.10 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyQt5.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyQt5.md index 247d2f74e978..1e5ce86d9d79 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyQt5.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyQt5.md @@ -6,6 +6,10 @@ hide: PyQt5 ===== + +PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company.This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework. + +https://www.riverbankcomputing.com/software/pyqt # Available modules @@ -17,7 +21,7 @@ To start using PyQt5, load one of these modules using a `module load` command li module load PyQt5/5.15.7-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyQtGraph.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyQtGraph.md index dc88498d9f47..991ba7698823 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyQtGraph.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyQtGraph.md @@ -6,6 +6,10 @@ hide: PyQtGraph ========= + +PyQtGraph is a pure-python graphics and GUI library built on PyQt5/PySide2 and numpy. + +http://www.pyqtgraph.org/ # Available modules @@ -17,7 +21,7 @@ To start using PyQtGraph, load one of these modules using a `module load` comman module load PyQtGraph/0.13.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyRETIS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyRETIS.md index 254c21a6342a..4201002640f8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyRETIS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyRETIS.md @@ -6,6 +6,10 @@ hide: PyRETIS ======= + +PyRETIS is a Python library for rare event molecular simulations with emphasis on methods based on transition interface sampling and replica exchange transition interface sampling. + +http://www.pyretis.org # Available modules @@ -17,10 +21,29 @@ To start using PyRETIS, load one of these modules using a `module load` command module load PyRETIS/2.5.0-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyRETIS/2.5.0-intel-2020b|-|x|x|-|x|x| |PyRETIS/2.5.0-intel-2020a-Python-3.8.2|-|-|x|-|x|x| |PyRETIS/2.5.0-foss-2020b|-|x|x|x|x|x| + + +### PyRETIS/2.5.0-intel-2020b + +This is a list of extensions included in the module: + +colorama-0.4.4, PyRETIS-2.5.0 + +### PyRETIS/2.5.0-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, PyRETIS-2.5.0, sphinx-bootstrap-theme-0.7.1 + +### PyRETIS/2.5.0-foss-2020b + +This is a list of extensions included in the module: + +colorama-0.4.4, PyRETIS-2.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyRe.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyRe.md index 0979e22fff86..70dac6557b03 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyRe.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyRe.md @@ -6,6 +6,10 @@ hide: PyRe ==== + +PyRe (Python Reliability) is a Python module for structural reliability analysis. + +https://hackl.science/pyre # Available modules @@ -17,7 +21,7 @@ To start using PyRe, load one of these modules using a `module load` command lik module load PyRe/5.0.3-20190221-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PySCF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PySCF.md index 015954128f4d..4db0e4c0c6bd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PySCF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PySCF.md @@ -6,6 +6,10 @@ hide: PySCF ===== + +PySCF is an open-source collection of electronic structure modules powered by Python. + +http://www.pyscf.org # Available modules @@ -17,7 +21,7 @@ To start using PySCF, load one of these modules using a `module load` command li module load PySCF/2.4.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,16 @@ module load PySCF/2.4.0-foss-2022b |PySCF/2.1.1-foss-2022a|-|x|x|x|x|x| |PySCF/1.7.6-gomkl-2021a|x|x|x|-|x|x| |PySCF/1.7.6-foss-2021a|x|x|x|-|x|x| + + +### PySCF/2.4.0-foss-2022b + +This is a list of extensions included in the module: + +dftd3-94091d8, dmrgscf-4ff57bf, doci-08079a9, fciqmc-ee98fb4, icmpspt-f26062b, mbd-485c18c, MCfun-0.2.2, naive-hci-0c28d6e, properties-8b94d8d, pyqmc-0.6.0, qsdopt-3ad2c02, semiempirical-470d716, shciscf-e8985e7, tblis-0d4dfd2, zquatev-4eb41b1 + +### PySCF/2.1.1-foss-2022a + +This is a list of extensions included in the module: + +dftd3-d214021, dmrgscf-4ff57bf, doci-08079a9, fciqmc-c7c30bb, icmpspt-f26062b, mbd-485c18c, MCfun-1a9ae31, naive-hci-0c28d6e, properties-92a4df7, pyqmc-0.5.0, qsdopt-3ad2c02, semiempirical-327d65e, shciscf-dd398d2, tblis-a1efbc0, zquatev-4eb41b1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyStan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyStan.md index 9485f2f840d3..a2fdab49ebd4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyStan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyStan.md @@ -6,6 +6,10 @@ hide: PyStan ====== + +Python interface to Stan, a package for Bayesian inference using the No-U-Turn sampler, a variant of Hamiltonian Monte Carlo. + +https://github.com/stan-dev/pystan # Available modules @@ -17,7 +21,7 @@ To start using PyStan, load one of these modules using a `module load` command l module load PyStan/2.19.1.1-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTables.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTables.md index 8ac544c7477c..5163e93e5bd1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTables.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTables.md @@ -6,6 +6,10 @@ hide: PyTables ======== + +PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browse, process and search very large amounts of data. One important feature of PyTables is that it optimizes memory and disk resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as relational or object oriented databases. + +https://www.pytables.org # Available modules @@ -17,7 +21,7 @@ To start using PyTables, load one of these modules using a `module load` command module load PyTables/3.8.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -31,3 +35,10 @@ module load PyTables/3.8.0-foss-2022a |PyTables/3.6.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| |PyTables/3.6.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| |PyTables/3.5.2-intel-2019b-Python-2.7.16|-|x|-|-|-|x| + + +### PyTables/3.8.0-foss-2022a + +This is a list of extensions included in the module: + +blosc2-2.0.0, tables-3.8.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTensor.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTensor.md index 6808dc9b6b63..d151919cb0d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTensor.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTensor.md @@ -6,6 +6,10 @@ hide: PyTensor ======== + +Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs + +https://github.com/pymc-devs/pytensor # Available modules @@ -17,8 +21,15 @@ To start using PyTensor, load one of these modules using a `module load` command module load PyTensor/2.17.1-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyTensor/2.17.1-gfbf-2023a|x|x|x|x|x|x| + + +### PyTensor/2.17.1-gfbf-2023a + +This is a list of extensions included in the module: + +cons-0.4.6, etuples-0.3.9, logical-unification-0.4.6, miniKanren-1.0.3, multipledispatch-1.0.0, PyTensor-2.17.1, toolz-0.12.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Geometric.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Geometric.md index abec95152df9..19e112fdd652 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Geometric.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Geometric.md @@ -6,6 +6,10 @@ hide: PyTorch-Geometric ================= + +PyTorch Geometric (PyG) is a geometric deep learning extension library for PyTorch. + +https://github.com/rusty1s/pytorch_geometric # Available modules @@ -17,7 +21,7 @@ To start using PyTorch-Geometric, load one of these modules using a `module load module load PyTorch-Geometric/1.7.0-fosscuda-2020b-numba-0.53.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,34 @@ module load PyTorch-Geometric/1.7.0-fosscuda-2020b-numba-0.53.1 |PyTorch-Geometric/1.6.3-fosscuda-2020b|-|-|-|-|x|-| |PyTorch-Geometric/1.4.2-foss-2019b-Python-3.7.4-PyTorch-1.4.0|-|x|x|-|x|x| |PyTorch-Geometric/1.3.2-foss-2019b-Python-3.7.4|-|x|-|-|-|x| + + +### PyTorch-Geometric/1.7.0-fosscuda-2020b-numba-0.53.1 + +This is a list of extensions included in the module: + +googledrivedownloader-0.4, plyfile-0.7.4, python-louvain-0.15, torch_cluster-1.5.9, torch_geometric-1.7.0, torch_scatter-2.0.7, torch_sparse-0.6.9, torch_spline_conv-1.2.1 + +### PyTorch-Geometric/1.7.0-foss-2020b-numba-0.53.1 + +This is a list of extensions included in the module: + +googledrivedownloader-0.4, plyfile-0.7.4, python-louvain-0.15, torch_cluster-1.5.9, torch_geometric-1.7.0, torch_scatter-2.0.7, torch_sparse-0.6.9, torch_spline_conv-1.2.1 + +### PyTorch-Geometric/1.6.3-fosscuda-2020b + +This is a list of extensions included in the module: + +googledrivedownloader-0.4, plyfile-0.7.3, python-louvain-0.15, torch_cluster-1.5.8, torch_geometric-1.6.3, torch_scatter-2.0.5, torch_sparse-0.6.8, torch_spline_conv-1.2.1 + +### PyTorch-Geometric/1.4.2-foss-2019b-Python-3.7.4-PyTorch-1.4.0 + +This is a list of extensions included in the module: + +googledrivedownloader-0.4, plyfile-0.7.1, torch_cluster-1.4.5, torch_geometric-1.4.2, torch_scatter-2.0.4, torch_sparse-0.6.0, torch_spline_conv-1.2.0 + +### PyTorch-Geometric/1.3.2-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +googledrivedownloader-0.4, plyfile-0.7.1, torch_cluster-1.4.5, torch_geometric-1.3.2, torch_scatter-1.4.0, torch_sparse-0.4.3, torch_spline_conv-1.1.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Ignite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Ignite.md index 71dfb4f2f45d..04cc20fdb0fd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Ignite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Ignite.md @@ -6,6 +6,10 @@ hide: PyTorch-Ignite ============== + +Ignite is a high-level library to help with training and evaluating neuralnetworks in PyTorch flexibly and transparently. + +https://pytorch-ignite.ai/ # Available modules @@ -17,8 +21,15 @@ To start using PyTorch-Ignite, load one of these modules using a `module load` c module load PyTorch-Ignite/0.4.12-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyTorch-Ignite/0.4.12-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| + + +### PyTorch-Ignite/0.4.12-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +pytorch-ignite-0.4.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Lightning.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Lightning.md index 2c230696e233..ea4a0ef42b20 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Lightning.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Lightning.md @@ -6,6 +6,10 @@ hide: PyTorch-Lightning ================= + +PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. + +https://pytorchlightning.ai # Available modules @@ -17,7 +21,7 @@ To start using PyTorch-Lightning, load one of these modules using a `module load module load PyTorch-Lightning/2.1.3-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,46 @@ module load PyTorch-Lightning/2.1.3-foss-2023a |PyTorch-Lightning/1.7.7-foss-2022a-CUDA-11.7.0|-|-|x|-|-|-| |PyTorch-Lightning/1.5.9-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| |PyTorch-Lightning/1.5.9-foss-2021a|x|x|x|x|x|x| + + +### PyTorch-Lightning/2.1.3-foss-2023a + +This is a list of extensions included in the module: + +aiobotocore-2.9.1, aioitertools-0.11.0, anyio-4.2.0, arrow-1.3.0, blessed-1.20.0, boto3-1.33.13, botocore-1.33.13, commonmark-0.9.1, croniter-2.0.1, editor-1.6.5, exceptiongroup-1.2.0, fastapi-0.109.0, fsspec-2023.12.2, h11-0.14.0, inquirer-3.2.1, itsdangerous-2.1.2, jmespath-1.0.1, lightning-utilities-0.10.1, lightning_cloud-0.5.61, markdown-it-py-3.0.0, mdurl-0.1.2, PyJWT-2.8.0, python-editor-1.0.4, python_multipart-0.0.6, pytorch-lightning-2.1.3, readchar-4.0.5, rich-13.7.0, runs-1.2.0, s3fs-2023.12.2, s3transfer-0.8.2, sniffio-1.3.0, starlette-0.35.1, starsessions-2.1.2, torchmetrics-1.3.0.post0, traitlets-5.14.1, types-python-dateutil-2.8.19.20240106, uvicorn-0.26.0, websocket-client-1.7.0, wrapt-1.16.0, xmod-1.8.1 + +### PyTorch-Lightning/2.1.2-foss-2022b + +This is a list of extensions included in the module: + +aiobotocore-2.9.0, aioitertools-0.11.0, anyio-4.2.0, arrow-1.3.0, blessed-1.20.0, commonmark-0.9.1, croniter-2.0.1, editor-1.6.3, exceptiongroup-1.2.0, fastapi-0.108.0, fsspec-2023.12.2, h11-0.14.0, inquirer-3.2.0, itsdangerous-2.1.2, lightning-utilities-0.10.0, lightning_cloud-0.5.57, markdown-it-py-3.0.0, mdurl-0.1.2, PyJWT-2.8.0, python-editor-1.0.4, python_multipart-0.0.6, pytorch-lightning-2.1.2, readchar-4.0.5, rich-13.7.0, runs-1.2.0, s3fs-2023.12.2, sniffio-1.3.0, starlette-0.32.0.post1, starsessions-2.1.3, torchmetrics-1.2.1, traitlets-5.14.1, types-python-dateutil-2.8.19.14, uvicorn-0.25.0, websocket-client-1.7.0, wrapt-1.16.0, xmod-1.8.1 + +### PyTorch-Lightning/1.8.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +aiobotocore-2.3.4, aioitertools-0.11.0, anyio-3.6.1, arrow-1.2.3, blessed-1.19.1, botocore-1.24.21, commonmark-0.9.1, croniter-1.3.8, fastapi-0.79.1, fsspec-2022.7.1, inquirer-2.10.1, itsdangerous-2.1.2, jmespath-1.0.1, lightning-utilities-0.4.2, lightning_cloud-0.5.12, pydantic-1.10.2, PyJWT-2.6.0, python-editor-1.0.4, pytorch-lightning-1.8.4, readchar-4.0.3, rich-12.5.1, s3fs-2022.7.1, sniffio-1.3.0, starlette-0.19.1, starsessions-1.3.0, torchmetrics-0.9.3, traitlets-5.2.0, websocket-client-1.4.2, wrapt-1.14.1 + +### PyTorch-Lightning/1.8.4-foss-2022a + +This is a list of extensions included in the module: + +aiobotocore-2.3.4, aioitertools-0.11.0, anyio-3.6.1, arrow-1.2.3, blessed-1.19.1, botocore-1.24.21, commonmark-0.9.1, croniter-1.3.8, fastapi-0.79.1, fsspec-2022.7.1, inquirer-2.10.1, itsdangerous-2.1.2, jmespath-1.0.1, lightning-utilities-0.4.2, lightning_cloud-0.5.12, pydantic-1.10.2, PyJWT-2.6.0, python-editor-1.0.4, pytorch-lightning-1.8.4, readchar-4.0.3, rich-12.5.1, s3fs-2022.7.1, sniffio-1.3.0, starlette-0.19.1, starsessions-1.3.0, torchmetrics-0.9.3, traitlets-5.2.0, websocket-client-1.4.2, wrapt-1.14.1 + +### PyTorch-Lightning/1.7.7-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +fsspec-2022.8.2, pyDeprecate-0.3.2, pytorch-lightning-1.7.7, torchmetrics-0.9.3 + +### PyTorch-Lightning/1.5.9-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +fsspec-2022.1.0, pyDeprecate-0.3.2, pytorch-lightning-1.5.9, torchmetrics-0.7.0 + +### PyTorch-Lightning/1.5.9-foss-2021a + +This is a list of extensions included in the module: + +fsspec-2022.1.0, pyDeprecate-0.3.2, pytorch-lightning-1.5.9, torchmetrics-0.7.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch.md index c4f0566940d1..747a31a6b940 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch.md @@ -6,6 +6,10 @@ hide: PyTorch ======= + +Tensors and Dynamic neural networks in Python with strong GPU acceleration.PyTorch is a deep learning framework that puts Python first. + +https://pytorch.org/ # Available modules @@ -17,7 +21,7 @@ To start using PyTorch, load one of these modules using a `module load` command module load PyTorch/2.1.2-foss-2023a-CUDA-12.1.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF.md index 4e3a967935c4..febb9473a1d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF.md @@ -6,6 +6,10 @@ hide: PyVCF ===== + +A Variant Call Format reader for Python. + +https://github.com/jamescasbon/PyVCF # Available modules @@ -17,7 +21,7 @@ To start using PyVCF, load one of these modules using a `module load` command li module load PyVCF/0.6.8-GCC-8.3.0-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF3.md index 16ab0f64e1dd..21287373e076 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF3.md @@ -6,6 +6,10 @@ hide: PyVCF3 ====== + +A VCFv4.0 and 4.1 parser for Python. The intent of this module is to mimic thecsv module in the Python stdlib, as opposed to more flexible serializationformats like JSON or YAML. vcf will attempt to parse the content of each recordbased on the data types specified in the meta-information lines -- specificallythe ##INFO and ##FORMAT lines. If these lines are missing or incomplete, itwill check against the reserved types mentioned in the spec. Failing that, itwill just return strings.PyVCF3 has been created because the Official PyVCF repository is no longermaintained and do not accept any pull requests. This fork is for python 3 onlyand has been published on pyPI as PyVCF3. + +https://github.com/dridk/PyVCF3 # Available modules @@ -17,8 +21,15 @@ To start using PyVCF3, load one of these modules using a `module load` command l module load PyVCF3/1.0.3-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyVCF3/1.0.3-GCCcore-11.3.0|x|x|x|x|x|x| + + +### PyVCF3/1.0.3-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +PyVCF3-1.0.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyWBGT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyWBGT.md index 07adfba58b19..72e87d09ae79 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyWBGT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyWBGT.md @@ -6,6 +6,10 @@ hide: PyWBGT ====== + +Cython source code for estimating wet bulb globe temperature (WBGT) from datasets of standardmeterological measurements using models developed by Liljegren et al (2008) + +https://github.com/QINQINKONG/PyWBGT # Available modules @@ -17,9 +21,22 @@ To start using PyWBGT, load one of these modules using a `module load` command l module load PyWBGT/1.0.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |PyWBGT/1.0.0-foss-2022a|x|x|x|x|x|x| |PyWBGT/1.0.0-foss-2021b|x|x|x|x|x|x| + + +### PyWBGT/1.0.0-foss-2022a + +This is a list of extensions included in the module: + +cftime-1.6.2, coszenith-1.0.0, WBGT-1.0.0 + +### PyWBGT/1.0.0-foss-2021b + +This is a list of extensions included in the module: + +cftime-1.6.2, coszenith-1.0.0, WBGT-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyWavelets.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyWavelets.md index fdddb1ace5c3..5c08ef57a298 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyWavelets.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyWavelets.md @@ -6,6 +6,10 @@ hide: PyWavelets ========== + +PyWavelets is open source wavelet transform software for Python. + +https://pywavelets.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using PyWavelets, load one of these modules using a `module load` comma module load PyWavelets/1.1.1-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyYAML.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyYAML.md index 2ac20d1ac667..be99f4151fa7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyYAML.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyYAML.md @@ -6,6 +6,10 @@ hide: PyYAML ====== + +PyYAML is a YAML parser and emitter for the Python programming language. + +https://github.com/yaml/pyyaml # Available modules @@ -17,7 +21,7 @@ To start using PyYAML, load one of these modules using a `module load` command l module load PyYAML/6.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyZMQ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyZMQ.md index 9ae3fccb2324..84a60b835ad5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyZMQ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyZMQ.md @@ -6,6 +6,10 @@ hide: PyZMQ ===== + +Python bindings for ZeroMQ + +https://www.zeromq.org/bindings:python # Available modules @@ -17,7 +21,7 @@ To start using PyZMQ, load one of these modules using a `module load` command li module load PyZMQ/25.1.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PycURL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PycURL.md index 2f72af9ea0c9..cd6ca6558a45 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PycURL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PycURL.md @@ -6,6 +6,10 @@ hide: PycURL ====== + +PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features. + +http://pycurl.io/ # Available modules @@ -17,7 +21,7 @@ To start using PycURL, load one of these modules using a `module load` command l module load PycURL/7.45.2-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pychopper.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pychopper.md index 8e10fdf59a07..516e218d3605 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pychopper.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pychopper.md @@ -6,6 +6,10 @@ hide: Pychopper ========= + +A tool to identify, orient, trim and rescue full length cDNA reads. + +https://github.com/nanoporetech/pychopper # Available modules @@ -17,8 +21,15 @@ To start using Pychopper, load one of these modules using a `module load` comman module load Pychopper/2.3.1-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Pychopper/2.3.1-intel-2019b-Python-3.7.4|-|-|x|-|x|x| + + +### Pychopper/2.3.1-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +edlib-1.3.8.post1, parasail-1.2, Pychopper-2.3.1, sphinx_rtd_theme-0.4.3, tqdm-4.45.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pyomo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pyomo.md index 31b320f1f441..7ede06ae4652 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pyomo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pyomo.md @@ -6,6 +6,10 @@ hide: Pyomo ===== + +Pyomo is a Python-based open-source software package that supports a diverse set of optimization capabilities for formulating and analyzing optimization models. + +https://www.pyomo.org/ # Available modules @@ -17,8 +21,15 @@ To start using Pyomo, load one of these modules using a `module load` command li module load Pyomo/6.4.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Pyomo/6.4.2-foss-2022a|x|x|x|-|x|x| + + +### Pyomo/6.4.2-foss-2022a + +This is a list of extensions included in the module: + +ply-3.11, Pyomo-6.4.2, PyUtilib-6.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pysam.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pysam.md index 3df92aa71505..9a65a7cabd39 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pysam.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pysam.md @@ -6,6 +6,10 @@ hide: Pysam ===== + +Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. + +https://github.com/pysam-developers/pysam # Available modules @@ -17,7 +21,7 @@ To start using Pysam, load one of these modules using a `module load` command li module load Pysam/0.22.0-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Python-bundle-PyPI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Python-bundle-PyPI.md index 058f7bdea346..9e059d2853d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Python-bundle-PyPI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Python-bundle-PyPI.md @@ -6,6 +6,10 @@ hide: Python-bundle-PyPI ================== + +Bundle of Python packages from PyPI + +https://python.org/ # Available modules @@ -17,9 +21,22 @@ To start using Python-bundle-PyPI, load one of these modules using a `module loa module load Python-bundle-PyPI/2023.10-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Python-bundle-PyPI/2023.10-GCCcore-13.2.0|x|x|x|x|x|x| |Python-bundle-PyPI/2023.06-GCCcore-12.3.0|x|x|x|x|x|x| + + +### Python-bundle-PyPI/2023.10-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.13, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.1, attrs-23.1.0, Babel-2.13.1, backports.entry-points-selectable-1.2.0, backports.functools_lru_cache-1.6.6, bitarray-2.8.2, bitstring-4.1.2, blist-1.3.6, cachecontrol-0.13.1, cachy-0.3.0, certifi-2023.7.22, cffi-1.16.0, chardet-5.2.0, charset-normalizer-3.3.1, cleo-2.0.1, click-8.1.7, cloudpickle-3.0.0, colorama-0.4.6, commonmark-0.9.1, crashtest-0.4.1, Cython-3.0.4, decorator-5.1.1, distlib-0.3.7, distro-1.8.0, docopt-0.6.2, docutils-0.20.1, doit-0.36.0, dulwich-0.21.6, ecdsa-0.18.0, editables-0.5, exceptiongroup-1.1.3, execnet-2.0.2, filelock-3.13.0, fsspec-2023.10.0, future-0.18.3, glob2-0.7, html5lib-1.1, idna-3.4, imagesize-1.4.1, importlib_metadata-6.8.0, importlib_resources-6.1.0, iniconfig-2.0.0, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jaraco.classes-3.3.0, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.3.2, jsonschema-4.17.3, keyring-24.2.0, keyrings.alt-5.0.0, liac-arff-2.5.0, lockfile-0.12.2, markdown-it-py-3.0.0, MarkupSafe-2.1.3, mdurl-0.1.2, mock-5.1.0, more-itertools-10.1.0, msgpack-1.0.7, netaddr-0.9.0, netifaces-0.11.0, packaging-23.2, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.11.2, pbr-5.11.1, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.11.0, pluggy-1.3.0, pooch-1.8.0, psutil-5.9.6, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.5.0, pycparser-2.21, pycryptodome-3.19.0, pydevtool-0.3.0, Pygments-2.16.1, Pygments-2.16.1, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.1.1, pyrsistent-0.20.0, pytest-7.4.3, pytest-xdist-3.3.1, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2023.3.post1, rapidfuzz-2.15.2, regex-2023.10.3, requests-2.31.0, requests-toolbelt-1.0.0, rich-13.6.0, rich-click-1.7.0, scandir-1.10.0, SecretStorage-3.3.3, semantic_version-2.10.0, shellingham-1.5.4, simplegeneric-0.8.1, simplejson-3.19.2, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, sphinx-7.2.6, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-jsmath-1.0.1, sphinxcontrib_applehelp-1.0.7, sphinxcontrib_devhelp-1.0.5, sphinxcontrib_htmlhelp-2.0.4, sphinxcontrib_qthelp-1.0.6, sphinxcontrib_serializinghtml-1.1.9, sphinxcontrib_websupport-1.2.6, tabulate-0.9.0, threadpoolctl-3.2.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.12.1, typing_extensions-4.8.0, ujson-5.8.0, urllib3-2.0.7, wcwidth-0.2.8, webencodings-0.5.1, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.17.0 + +### Python-bundle-PyPI/2023.06-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.13, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.1, attrs-23.1.0, Babel-2.12.1, backports.entry-points-selectable-1.2.0, backports.functools_lru_cache-1.6.5, bitstring-4.0.2, blist-1.3.6, CacheControl-0.12.14, cachy-0.3.0, certifi-2023.5.7, cffi-1.15.1, chardet-5.1.0, charset-normalizer-3.1.0, cleo-2.0.1, click-8.1.3, cloudpickle-2.2.1, colorama-0.4.6, commonmark-0.9.1, crashtest-0.4.1, Cython-0.29.35, decorator-5.1.1, distlib-0.3.6, distro-1.8.0, docopt-0.6.2, docutils-0.20.1, doit-0.36.0, dulwich-0.21.5, ecdsa-0.18.0, editables-0.3, exceptiongroup-1.1.1, execnet-1.9.0, filelock-3.12.2, fsspec-2023.6.0, future-0.18.3, glob2-0.7, html5lib-1.1, idna-3.4, imagesize-1.4.1, importlib_metadata-6.7.0, importlib_resources-5.12.0, iniconfig-2.0.0, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jaraco.classes-3.2.3, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.2.0, jsonschema-4.17.3, keyring-23.13.1, keyrings.alt-4.2.0, liac-arff-2.5.0, lockfile-0.12.2, markdown-it-py-3.0.0, MarkupSafe-2.1.3, mdurl-0.1.2, mock-5.0.2, more-itertools-9.1.0, msgpack-1.0.5, netaddr-0.8.0, netifaces-0.11.0, packaging-23.1, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.11.1, pbr-5.11.1, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.8.0, pluggy-1.2.0, pooch-1.7.0, psutil-5.9.5, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.5.0, pycparser-2.21, pycryptodome-3.18.0, pydevtool-0.3.0, Pygments-2.15.1, Pygments-2.15.1, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.1.0, pyrsistent-0.19.3, pytest-7.4.0, pytest-xdist-3.3.1, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2023.3, rapidfuzz-2.15.1, regex-2023.6.3, requests-2.31.0, requests-toolbelt-1.0.0, rich-13.4.2, rich-click-1.6.1, scandir-1.10.0, SecretStorage-3.3.3, semantic_version-2.10.0, shellingham-1.5.0.post1, simplegeneric-0.8.1, simplejson-3.19.1, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, Sphinx-7.0.1, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-applehelp-1.0.4, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.1, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.9.0, threadpoolctl-3.1.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.11.8, typing_extensions-4.6.3, ujson-5.8.0, urllib3-1.26.16, wcwidth-0.2.6, webencodings-0.5.1, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.15.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Python.md index fa7f7160d9a4..3f6f4b136310 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Python.md @@ -6,6 +6,10 @@ hide: Python ====== + +Python is a programming language that lets you work more quickly and integrate your systems more effectively. + +https://python.org/ # Available modules @@ -17,7 +21,7 @@ To start using Python, load one of these modules using a `module load` command l module load Python/3.11.5-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -45,3 +49,100 @@ module load Python/3.11.5-GCCcore-13.2.0 |Python/2.7.18-GCCcore-9.3.0|x|x|x|x|x|x| |Python/2.7.16-GCCcore-8.3.0|x|x|x|-|x|x| |Python/2.7.15-GCCcore-8.2.0|-|x|-|-|-|-| + + +### Python/3.11.5-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +flit_core-3.9.0, pip-23.2.1, setuptools-68.2.2, wheel-0.41.2 + +### Python/3.11.3-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +flit_core-3.9.0, pip-23.1.2, setuptools-67.7.2, wheel-0.40.0 + +### Python/3.10.8-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.1, attrs-22.1.0, Babel-2.11.0, backports.entry-points-selectable-1.2.0, backports.functools_lru_cache-1.6.4, bcrypt-4.0.1, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.11, cachy-0.3.0, certifi-2022.9.24, cffi-1.15.1, chardet-5.0.0, charset-normalizer-2.1.1, cleo-1.0.0a5, click-8.1.3, clikit-0.6.2, cloudpickle-2.2.0, colorama-0.4.6, commonmark-0.9.1, crashtest-0.3.1, cryptography-38.0.3, Cython-0.29.32, decorator-5.1.1, distlib-0.3.6, docopt-0.6.2, docutils-0.19, doit-0.36.0, dulwich-0.20.50, ecdsa-0.18.0, editables-0.3, exceptiongroup-1.0.1, execnet-1.9.0, filelock-3.8.0, flit-3.8.0, flit_core-3.8.0, flit_scm-1.7.0, fsspec-2022.11.0, future-0.18.2, glob2-0.7, hatch_fancy_pypi_readme-22.8.0, hatch_vcs-0.2.0, hatchling-1.11.1, html5lib-1.1, idna-3.4, imagesize-1.4.1, importlib_metadata-5.0.0, importlib_resources-5.10.0, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jaraco.classes-3.2.3, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.2.0, jsonschema-4.17.0, keyring-23.11.0, keyrings.alt-4.2.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-2.1.1, mock-4.0.3, more-itertools-9.0.0, msgpack-1.0.4, netaddr-0.8.0, netifaces-0.11.0, packaging-21.3, paramiko-2.12.0, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.10.1, pbr-5.11.0, pexpect-4.8.0, pip-22.3.1, pkginfo-1.8.3, platformdirs-2.5.3, pluggy-1.0.0, poetry-1.2.2, poetry-core-1.3.2, poetry_plugin_export-1.2.0, pooch-1.6.0, psutil-5.9.4, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.4.8, pycparser-2.21, pycryptodome-3.17, pydevtool-0.3.0, Pygments-2.13.0, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.0.9, pyrsistent-0.19.2, pytest-7.2.0, pytest-xdist-3.1.0, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2022.6, regex-2022.10.31, requests-2.28.1, requests-toolbelt-0.9.1, rich-13.1.0, rich-click-1.6.0, scandir-1.10.0, SecretStorage-3.3.3, semantic_version-2.10.0, setuptools-63.4.3, setuptools-rust-1.5.2, setuptools_scm-7.0.5, shellingham-1.5.0, simplegeneric-0.8.1, simplejson-3.17.6, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, Sphinx-5.3.0, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.0, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.9.0, threadpoolctl-3.1.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.11.6, typing_extensions-4.4.0, ujson-5.5.0, urllib3-1.26.12, virtualenv-20.16.6, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.38.4, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.10.0 + +### Python/3.10.4-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.0, attrs-21.4.0, Babel-2.10.1, backports.entry_points_selectable-1.1.1, backports.functools_lru_cache-1.6.4, bcrypt-3.2.2, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.11, cachy-0.3.0, certifi-2021.10.8, cffi-1.15.0, chardet-4.0.0, charset-normalizer-2.0.12, cleo-0.8.1, click-8.1.3, clikit-0.6.2, colorama-0.4.4, crashtest-0.3.1, cryptography-37.0.1, Cython-0.29.28, decorator-5.1.1, distlib-0.3.4, docopt-0.6.2, docutils-0.17.1, ecdsa-0.17.0, editables-0.3, filelock-3.6.0, flit-3.7.1, flit-core-3.7.1, fsspec-2022.3.0, future-0.18.2, glob2-0.7, html5lib-1.1, idna-3.3, imagesize-1.3.0, importlib_metadata-4.11.3, importlib_resources-5.7.1, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.1.0, jsonschema-4.4.0, keyring-23.5.0, keyrings.alt-4.1.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-2.1.1, mock-4.0.3, more-itertools-8.12.0, msgpack-1.0.3, netaddr-0.8.0, netifaces-0.11.0, packaging-20.9, paramiko-2.10.4, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.9.0, pbr-5.8.1, pexpect-4.8.0, pip-22.0.4, pkginfo-1.8.2, platformdirs-2.4.1, pluggy-1.0.0, poetry-1.1.13, poetry-core-1.0.8, psutil-5.9.0, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.4.8, pycparser-2.21, pycrypto-2.6.1, Pygments-2.12.0, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.0.8, pyrsistent-0.18.1, pytest-7.1.2, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2022.1, regex-2022.4.24, requests-2.27.1, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.3.2, semantic_version-2.9.0, setuptools-62.1.0, setuptools-rust-1.3.0, setuptools_scm-6.4.2, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.6, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, Sphinx-4.5.0, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.0, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.8.9, threadpoolctl-3.1.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.10.2, typing_extensions-4.2.0, ujson-5.2.0, urllib3-1.26.9, virtualenv-20.14.1, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.37.1, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.8.0 + +### Python/3.9.6-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-21.2.0, Babel-2.9.1, backports.entry_points_selectable-1.1.0, backports.functools_lru_cache-1.6.4, bcrypt-3.2.0, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2021.5.30, cffi-1.14.6, chardet-4.0.0, charset-normalizer-2.0.4, cleo-0.8.1, click-8.0.1, clikit-0.6.2, colorama-0.4.4, crashtest-0.3.1, cryptography-3.4.7, Cython-0.29.24, decorator-5.0.9, distlib-0.3.2, docopt-0.6.2, docutils-0.17.1, ecdsa-0.17.0, filelock-3.0.12, flit-3.3.0, flit-core-3.3.0, fsspec-2021.7.0, future-0.18.2, glob2-0.7, html5lib-1.1, idna-3.2, imagesize-1.2.0, importlib_metadata-4.6.3, importlib_resources-5.2.2, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.7.1, Jinja2-3.0.1, joblib-1.0.1, jsonschema-3.2.0, keyring-21.2.0, keyrings.alt-4.1.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-2.0.1, mock-4.0.3, more-itertools-8.8.0, msgpack-1.0.2, netaddr-0.8.0, netifaces-0.11.0, nose-1.3.7, packaging-20.9, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.6, paycheck-1.0.2, pbr-5.6.0, pexpect-4.8.0, pip-21.2.2, pkginfo-1.7.1, platformdirs-2.2.0, pluggy-0.13.1, poetry-1.1.7, poetry-core-1.0.3, psutil-5.8.0, ptyprocess-0.7.0, py-1.10.0, py_expression_eval-0.3.13, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.9.0, pylev-1.4.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.18.0, pytest-6.2.4, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2021.1, regex-2021.8.3, requests-2.26.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.3.1, semantic_version-2.8.5, setuptools-57.4.0, setuptools-rust-0.12.1, setuptools_scm-6.0.1, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.3, six-1.16.0, snowballstemmer-2.1.0, sortedcontainers-2.4.0, Sphinx-4.1.2, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.0, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.8.9, threadpoolctl-2.2.0, toml-0.10.2, tomlkit-0.7.2, typing_extensions-3.10.0.0, ujson-4.0.2, urllib3-1.26.6, virtualenv-20.7.0, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.36.2, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.5.0 + +### Python/3.9.5-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-21.2.0, Babel-2.9.1, bcrypt-3.2.0, bitstring-3.1.7, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2020.12.5, cffi-1.14.5, chardet-4.0.0, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.4, crashtest-0.3.1, cryptography-3.4.7, Cython-0.29.23, decorator-5.0.7, distlib-0.3.1, docopt-0.6.2, docutils-0.17.1, ecdsa-0.16.1, filelock-3.0.12, flit-3.2.0, flit-core-3.2.0, fsspec-2021.4.0, future-0.18.2, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib_metadata-4.0.1, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.6.0, Jinja2-2.11.3, joblib-1.0.1, jsonschema-3.2.0, keyring-21.8.0, keyrings.alt-4.0.2, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-4.0.3, more-itertools-8.7.0, msgpack-1.0.2, netaddr-0.8.0, netifaces-0.10.9, nose-1.3.7, packaging-20.9, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.6.0, pexpect-4.8.0, pip-21.1.1, pkginfo-1.7.0, pluggy-0.13.1, poetry-1.1.6, poetry-core-1.0.3, psutil-5.8.0, ptyprocess-0.7.0, py-1.10.0, py_expression_eval-0.3.13, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.9.0, pylev-1.3.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.17.3, pytest-6.2.4, python-dateutil-2.8.1, pytoml-0.1.21, pytz-2021.1, regex-2021.4.4, requests-2.25.1, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.3.1, semantic_version-2.8.5, setuptools-56.2.0, setuptools-rust-0.12.1, setuptools_scm-6.0.1, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.2, six-1.16.0, snowballstemmer-2.1.0, sortedcontainers-2.3.0, Sphinx-4.0.0, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-1.0.3, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.4, sphinxcontrib-websupport-1.2.4, tabulate-0.8.9, threadpoolctl-2.1.0, toml-0.10.2, tomlkit-0.7.0, ujson-4.0.2, urllib3-1.26.4, virtualenv-20.4.6, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.36.2, xlrd-2.0.1, zipp-3.4.1 + +### Python/3.8.6-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-20.2.0, Babel-2.8.0, bcrypt-3.2.0, bitstring-3.1.7, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2020.6.20, cffi-1.14.3, chardet-3.0.4, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.3, crashtest-0.3.1, cryptography-3.1.1, Cython-0.29.21, decorator-4.4.2, distlib-0.3.1, docopt-0.6.2, docutils-0.16, ecdsa-0.16.0, filelock-3.0.12, flit-3.0.0, flit-core-3.0.0, fsspec-0.8.4, future-0.18.2, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib_metadata-2.0.0, iniconfig-1.0.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.4.3, Jinja2-2.11.2, joblib-0.17.0, jsonschema-3.2.0, keyring-21.4.0, keyrings.alt-4.0.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-4.0.2, more-itertools-8.5.0, msgpack-1.0.0, netaddr-0.8.0, netifaces-0.10.9, nose-1.3.7, packaging-20.4, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.5.0, pexpect-4.8.0, pip-20.2.3, pkginfo-1.5.0.1, pluggy-0.13.1, poetry-1.1.3, poetry-core-1.0.0, psutil-5.7.2, ptyprocess-0.6.0, py-1.9.0, py_expression_eval-0.3.10, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.7.1, pylev-1.3.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.17.3, pytest-6.1.1, python-dateutil-2.8.1, pytoml-0.1.21, pytz-2020.1, regex-2020.10.11, requests-2.24.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.1.2, setuptools-50.3.0, setuptools_scm-4.1.2, shellingham-1.3.2, simplegeneric-0.8.1, simplejson-3.17.2, six-1.15.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-3.2.1, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-1.0.3, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.4, sphinxcontrib-websupport-1.2.4, tabulate-0.8.7, threadpoolctl-2.1.0, toml-0.10.1, tomlkit-0.7.0, ujson-4.0.1, urllib3-1.25.10, virtualenv-20.0.34, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.35.1, xlrd-1.2.0, zipp-3.3.0 + +### Python/3.8.2-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.3, asn1crypto-1.3.0, atomicwrites-1.3.0, attrs-19.3.0, Babel-2.8.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2020.4.5.1, cffi-1.14.0, chardet-3.0.4, click-7.1.1, cryptography-2.9.2, Cython-0.29.16, decorator-4.4.2, distlib-0.3.0, docopt-0.6.2, docutils-0.16, ecdsa-0.15, filelock-3.0.12, future-0.18.2, idna-2.9, imagesize-1.2.0, importlib_metadata-1.6.0, intervaltree-3.0.2, ipaddress-1.0.23, Jinja2-2.11.2, joblib-0.14.1, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-4.0.1, more-itertools-8.2.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-20.3, paramiko-2.7.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.4.5, pip-20.0.2, pluggy-0.13.1, psutil-5.7.0, py-1.8.1, py_expression_eval-0.3.9, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, PyNaCl-1.3.0, pyparsing-2.4.7, pytest-5.4.1, python-dateutil-2.8.1, pytz-2019.3, requests-2.23.0, scandir-1.10.0, setuptools-45.2.0, setuptools_scm-3.5.0, six-1.14.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-3.0.2, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-1.0.3, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.4, sphinxcontrib-websupport-1.2.1, tabulate-0.8.7, toml-0.10.0, ujson-2.0.3, urllib3-1.25.9, virtualenv-20.0.18, wcwidth-0.1.9, wheel-0.34.2, xlrd-1.2.0, zipp-1.2.0 + +### Python/3.7.4-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.7.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2019.9.11, cffi-1.12.3, chardet-3.0.4, Click-7.0, cryptography-2.7, Cython-0.29.13, deap-1.3.0, decorator-4.4.0, docopt-0.6.2, docutils-0.15.2, ecdsa-0.13.2, future-0.17.1, idna-2.8, imagesize-1.1.0, importlib_metadata-0.22, intervaltree-3.0.2, ipaddress-1.0.22, Jinja2-2.10.1, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-7.2.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.1, paramiko-2.6.0, pathlib2-2.3.4, paycheck-1.0.2, pbr-5.4.3, pip-19.2.3, pluggy-0.13.0, psutil-5.6.3, py-1.8.0, py_expression_eval-0.3.9, pyasn1-0.4.7, pycparser-2.19, pycrypto-2.6.1, Pygments-2.4.2, PyNaCl-1.3.0, pyparsing-2.4.2, pytest-5.1.2, python-dateutil-2.8.0, pytz-2019.2, requests-2.22.0, scandir-1.10.0, setuptools-41.2.0, setuptools_scm-3.3.3, six-1.12.0, snowballstemmer-1.9.1, sortedcontainers-2.1.0, Sphinx-2.2.0, sphinxcontrib-applehelp-1.0.1, sphinxcontrib-devhelp-1.0.1, sphinxcontrib-htmlhelp-1.0.2, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.2, sphinxcontrib-serializinghtml-1.1.3, sphinxcontrib-websupport-1.1.2, tabulate-0.8.3, ujson-1.35, urllib3-1.25.3, virtualenv-16.7.5, wcwidth-0.1.7, wheel-0.33.6, xlrd-1.2.0, zipp-0.6.0 + +### Python/3.7.2-GCCcore-8.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.6.0, bcrypt-3.1.6, bitstring-3.1.5, blist-1.3.6, certifi-2019.3.9, cffi-1.12.2, chardet-3.0.4, Click-7.0, cryptography-2.6.1, Cython-0.29.6, deap-1.2.2, decorator-4.3.2, docopt-0.6.2, docutils-0.14, ecdsa-0.13, future-0.17.1, idna-2.8, imagesize-1.1.0, ipaddress-1.0.22, Jinja2-2.10, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-2.0.0, more-itertools-6.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.0, paramiko-2.4.2, pathlib2-2.3.3, paycheck-1.0.2, pbr-5.1.3, pip-19.0.3, pluggy-0.9.0, psutil-5.6.1, py-1.8.0, py_expression_eval-0.3.6, pyasn1-0.4.5, pycparser-2.19, pycrypto-2.6.1, Pygments-2.3.1, PyNaCl-1.3.0, pyparsing-2.3.1, pytest-4.3.1, python-dateutil-2.8.0, pytz-2018.9, requests-2.21.0, scandir-1.10.0, setuptools-40.8.0, setuptools_scm-3.2.0, six-1.12.0, snowballstemmer-1.2.1, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.0, tabulate-0.8.3, ujson-1.35, urllib3-1.24.1, virtualenv-16.4.3, wcwidth-0.1.7, wheel-0.33.1, xlrd-1.2.0 + +### Python/2.7.18-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +pip-20.3.4, setuptools-44.1.1, wheel-0.37.1 + +### Python/2.7.18-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, argparse-1.4.0, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-21.2.0, Babel-2.9.1, backports.entry_points_selectable-1.1.0, backports.functools_lru_cache-1.6.4, bcrypt-3.1.7, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2021.5.30, cffi-1.14.6, chardet-4.0.0, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.4, configparser-4.0.2, contextlib2-0.6.0.post1, cryptography-3.3.2, Cython-0.29.24, decorator-4.4.2, distlib-0.3.2, docopt-0.6.2, docutils-0.17.1, ecdsa-0.17.0, entrypoints-0.3, enum34-1.1.10, filelock-3.0.12, funcsigs-1.0.2, functools32-3.2.3-2, future-0.18.2, futures-3.3.0, glob2-0.6, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib_metadata-1.7.0, importlib_resources-3.3.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, Jinja2-2.11.3, joblib-0.14.1, jsonschema-3.2.0, keyring-18.0.1, keyrings.alt-3.2.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, msgpack-1.0.2, netaddr-0.8.0, netifaces-0.11.0, nose-1.3.7, packaging-20.9, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.6, paycheck-1.0.2, pbr-5.6.0, pexpect-4.8.0, pip-20.3.4, pkginfo-1.7.1, platformdirs-2.0.2, pluggy-0.13.1, poetry-1.1.7, poetry-core-1.0.3, psutil-5.8.0, ptyprocess-0.7.0, py-1.10.0, py_expression_eval-0.3.13, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, pylev-1.4.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.16.1, pytest-4.6.11, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2021.1, regex-2021.3.17, requests-2.26.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-2.3.1, setuptools-44.1.1, setuptools_scm-5.0.2, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.3, singledispatch-3.7.0, six-1.16.0, snowballstemmer-2.1.0, sortedcontainers-2.4.0, Sphinx-1.8.6, sphinx-bootstrap-theme-0.8.0, sphinxcontrib-websupport-1.1.2, subprocess32-3.5.4, tabulate-0.8.9, toml-0.10.2, tomlkit-0.7.2, typing-3.10.0.0, ujson-2.0.3, urllib3-1.26.6, virtualenv-20.7.0, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.36.2, xlrd-2.0.1, zipp-1.2.0 + +### Python/2.7.18-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, argparse-1.4.0, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-20.2.0, Babel-2.8.0, backports.functools-lru-cache-1.6.1, bcrypt-3.1.7, bitstring-3.1.7, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2020.6.20, cffi-1.14.3, chardet-3.0.4, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.3, configparser-4.0.2, contextlib2-0.6.0.post1, cryptography-3.1.1, Cython-0.29.21, decorator-4.4.2, distlib-0.3.1, docopt-0.6.2, docutils-0.16, ecdsa-0.16.0, entrypoints-0.3, enum34-1.1.10, filelock-3.0.12, funcsigs-1.0.2, functools32-3.2.3-2, future-0.18.2, futures-3.3.0, glob2-0.6, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib-metadata-1.7.0, importlib_resources-3.0.0, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, Jinja2-2.11.2, joblib-0.14.1, jsonschema-3.2.0, keyring-18.0.1, keyrings.alt-3.2.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, msgpack-1.0.0, netaddr-0.8.0, netifaces-0.10.9, nose-1.3.7, packaging-20.4, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.5.0, pexpect-4.8.0, pip-20.3.4, pkginfo-1.5.0.1, pluggy-0.13.1, poetry-1.1.3, poetry-core-1.0.0, psutil-5.7.2, ptyprocess-0.6.0, py-1.9.0, py_expression_eval-0.3.10, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, pylev-1.3.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.16.1, pytest-4.6.11, python-dateutil-2.8.1, pytoml-0.1.21, pytz-2020.1, regex-2020.10.11, requests-2.24.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-2.3.1, setuptools-44.1.1, setuptools_scm-4.1.2, shellingham-1.3.2, simplegeneric-0.8.1, simplejson-3.17.2, singledispatch-3.4.0.3, six-1.15.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-1.8.5, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-websupport-1.1.2, subprocess32-3.5.4, tabulate-0.8.7, toml-0.10.1, tomlkit-0.7.0, typing-3.7.4.3, ujson-2.0.3, urllib3-1.25.10, virtualenv-20.0.34, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.35.1, xlrd-1.2.0, zipp-1.2.0 + +### Python/2.7.18-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.3, asn1crypto-1.3.0, atomicwrites-1.3.0, attrs-19.3.0, Babel-2.8.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2020.4.5.1, cffi-1.14.0, chardet-3.0.4, click-7.1.1, configparser-4.0.2, contextlib2-0.6.0.post1, cryptography-2.9.2, Cython-0.29.16, decorator-4.4.2, distlib-0.3.0, docopt-0.6.2, docutils-0.16, ecdsa-0.15, enum34-1.1.10, filelock-3.0.12, funcsigs-1.0.2, future-0.18.2, idna-2.9, imagesize-1.2.0, importlib_metadata-1.6.0, importlib_resources-1.4.0, intervaltree-3.0.2, ipaddress-1.0.23, Jinja2-2.11.2, joblib-0.14.1, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-20.3, paramiko-2.7.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.4.5, pip-20.0.2, pluggy-0.13.1, psutil-5.7.0, py-1.8.1, py_expression_eval-0.3.9, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, PyNaCl-1.3.0, pyparsing-2.4.7, pytest-4.6.9, python-dateutil-2.8.1, pytz-2019.3, requests-2.23.0, scandir-1.10.0, setuptools-44.0.0, setuptools_scm-3.5.0, singledispatch-3.4.0.3, six-1.14.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.2, tabulate-0.8.7, toml-0.10.0, typing-3.7.4.1, ujson-2.0.3, urllib3-1.25.9, virtualenv-20.0.18, wcwidth-0.1.9, wheel-0.34.2, xlrd-1.2.0, zipp-1.2.0 + +### Python/2.7.16-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.7.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2019.9.11, cffi-1.12.3, chardet-3.0.4, Click-7.0, configparser-4.0.2, contextlib2-0.5.5, cryptography-2.7, Cython-0.29.13, deap-1.3.0, decorator-4.4.0, docopt-0.6.2, docutils-0.15.2, ecdsa-0.13.2, enum34-1.1.6, funcsigs-1.0.2, future-0.17.1, idna-2.8, imagesize-1.1.0, importlib_metadata-0.22, intervaltree-3.0.2, ipaddress-1.0.22, Jinja2-2.10.1, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.1, paramiko-2.6.0, pathlib2-2.3.4, paycheck-1.0.2, pbr-5.4.3, pip-19.2.3, pluggy-0.13.0, psutil-5.6.3, py-1.8.0, py_expression_eval-0.3.9, pyasn1-0.4.7, pycparser-2.19, pycrypto-2.6.1, Pygments-2.4.2, PyNaCl-1.3.0, pyparsing-2.4.2, pytest-4.6.5, python-dateutil-2.8.0, pytz-2019.2, requests-2.22.0, scandir-1.10.0, setuptools-41.2.0, setuptools_scm-3.3.3, singledispatch-3.4.0.3, six-1.12.0, snowballstemmer-1.9.1, sortedcontainers-2.1.0, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.2, tabulate-0.8.3, typing-3.7.4.1, ujson-1.35, urllib3-1.25.3, virtualenv-16.7.5, wcwidth-0.1.7, wheel-0.33.6, xlrd-1.2.0, zipp-0.6.0 + +### Python/2.7.15-GCCcore-8.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.6.0, bcrypt-3.1.6, bitstring-3.1.5, blist-1.3.6, certifi-2019.3.9, cffi-1.12.2, chardet-3.0.4, Click-7.0, cryptography-2.6.1, Cython-0.29.6, deap-1.2.2, decorator-4.3.2, docopt-0.6.2, docutils-0.14, ecdsa-0.13, enum34-1.1.6, funcsigs-1.0.2, future-0.17.1, idna-2.8, imagesize-1.1.0, ipaddress-1.0.22, Jinja2-2.10, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-2.0.0, more-itertools-5.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.0, paramiko-2.4.2, pathlib2-2.3.3, paycheck-1.0.2, pbr-5.1.3, pip-19.0.3, pluggy-0.9.0, psutil-5.6.1, py-1.8.0, py_expression_eval-0.3.6, pyasn1-0.4.5, pycparser-2.19, pycrypto-2.6.1, Pygments-2.3.1, PyNaCl-1.3.0, pyparsing-2.3.1, pytest-4.3.1, python-dateutil-2.8.0, pytz-2018.9, requests-2.21.0, scandir-1.10.0, setuptools-40.8.0, setuptools_scm-3.2.0, singledispatch-3.4.0.3, six-1.12.0, snowballstemmer-1.2.1, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.0, tabulate-0.8.3, typing-3.6.6, ujson-1.35, urllib3-1.24.1, virtualenv-16.4.3, wcwidth-0.1.7, wheel-0.33.1, xlrd-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QCA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QCA.md index a6b78c10e59c..34cb2f4a6e5b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QCA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QCA.md @@ -6,6 +6,10 @@ hide: QCA === + +Taking a hint from the similarly-named Java Cryptography Architecture, QCA aims to provide a straightforward and cross-platform crypto API, using Qt datatypes and conventions. QCA separates the API from the implementation, using plugins known as Providers. The advantage of this model is to allow applications to avoid linking to or explicitly depending on any particular cryptographic library. This allows one to easily change or upgrade crypto implementations without even needing to recompile the application! QCA should work everywhere Qt does, including Windows/Unix/MacOSX. + +https://userbase.kde.org/QCA # Available modules @@ -17,7 +21,7 @@ To start using QCA, load one of these modules using a `module load` command like module load QCA/2.3.5-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QCxMS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QCxMS.md index 7838144c2ddf..f4ae1b2f213a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QCxMS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QCxMS.md @@ -6,6 +6,10 @@ hide: QCxMS ===== + +QCxMS is a quantum chemical based program to calculate electron ionization (EI) and collision induced dissociation (CID) mass spectra using Born-Oppenheimer Molecular Dynamics (BO-MD). It is the successor of the QCEIMS program, in which the EI part is exchanged to x to account for the greater general applicibility of the program. + +https://xtb-docs.readthedocs.io/en/latest/qcxms_doc/qcxms.html # Available modules @@ -17,7 +21,7 @@ To start using QCxMS, load one of these modules using a `module load` command li module load QCxMS/5.0.3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QD.md index 077424e62618..18f9319d56f9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QD.md @@ -6,6 +6,10 @@ hide: QD == + +Quad Double computation package + +https://github.com/scibuilder/QD # Available modules @@ -17,7 +21,7 @@ To start using QD, load one of these modules using a `module load` command like: module load QD/2.3.17-NVHPC-21.2-20160110 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QGIS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QGIS.md index c5f1b5e56063..ebb600e447e4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QGIS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QGIS.md @@ -6,6 +6,10 @@ hide: QGIS ==== + +QGIS is a user friendly Open Source Geographic Information System (GIS) + +http://www.qgis.org/ # Available modules @@ -17,7 +21,7 @@ To start using QGIS, load one of these modules using a `module load` command lik module load QGIS/3.28.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QIIME2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QIIME2.md index ee5982b5b64d..d52d0e55f6d0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QIIME2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QIIME2.md @@ -6,6 +6,10 @@ hide: QIIME2 ====== + +QIIME is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data. + +http://qiime2.org/ # Available modules @@ -17,7 +21,7 @@ To start using QIIME2, load one of these modules using a `module load` command l module load QIIME2/2023.5.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -27,3 +31,10 @@ module load QIIME2/2023.5.1-foss-2022a |QIIME2/2020.11|-|x|x|-|x|x| |QIIME2/2020.8|-|x|x|-|x|x| |QIIME2/2019.7|-|-|-|-|-|x| + + +### QIIME2/2023.5.1-foss-2022a + +This is a list of extensions included in the module: + +altair-5.0.1, anyio-3.6.1, argcomplete-2.0.0, argon2-cffi-bindings-21.2.0, astor-0.8.1, atpublic-4.0, bibtexparser-1.4.0, biom-format-2.1.15, cached-property-1.5.2, contourpy-1.0.7, deblur-1.1.0, emperor-1.0.4, fastcluster-1.2.6, flufl-lock-8.0.1, formulaic-0.4.0, gneiss-0.4.6, ijson-3.2.3, interface_meta-1.3.0, iow-1.0.6, pylatexenc-2.10, pytz-deprecation-shim-0.1.0.post0, q2-alignment-2023.5.0, q2-composition-2023.5.0, q2-cutadapt-2023.5.1, q2-dada2-2023.5.0, q2-deblur-2023.5.0, q2-demux-2023.5.0, q2-diversity-2023.5.1, q2-diversity-lib-2023.5.0, q2-emperor-2023.5.0, q2-feature-classifier-2023.5.0, q2-feature-table-2023.5.0, q2-fragment-insertion-2023.5.0, q2-gneiss-2023.5.0, q2-longitudinal-2023.5.0, q2-metadata-2023.5.0, q2-phylogeny-2023.5.0, q2-quality-control-2023.5.0, q2-quality-filter-2023.5.0, q2-sample-classifier-2023.5.0, q2-taxa-2023.5.0, q2-types-2023.5.0, q2-vsearch-2023.5.0, q2cli-2023.5.1, q2templates-2023.5.0, QIIME2-2023.5.1, sniffio-1.3.0, toolz-0.12.0, tzdata-2022.7, tzlocal-5.0.1, unifrac-1.1.1, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QScintilla.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QScintilla.md index 1436b7b0afa0..416debd0ac2c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QScintilla.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QScintilla.md @@ -6,6 +6,10 @@ hide: QScintilla ========== + +QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control + +https://www.riverbankcomputing.com/software/qscintilla # Available modules @@ -17,7 +21,7 @@ To start using QScintilla, load one of these modules using a `module load` comma module load QScintilla/2.11.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QUAST.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QUAST.md index 570f9e79c8bb..3f7ddee57980 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QUAST.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QUAST.md @@ -6,6 +6,10 @@ hide: QUAST ===== + +QUAST evaluates genome assemblies by computing various metrics.It works both with and without reference genomes. The tool accepts multipleassemblies, thus is suitable for comparison. + +https://github.com/ablab/quast # Available modules @@ -17,7 +21,7 @@ To start using QUAST, load one of these modules using a `module load` command li module load QUAST/5.2.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,22 @@ module load QUAST/5.2.0-foss-2022a |QUAST/5.0.2-foss-2020b-Python-2.7.18|-|x|x|x|x|x| |QUAST/5.0.2-foss-2020b|-|x|x|x|x|x| |QUAST/5.0.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### QUAST/5.2.0-foss-2022a + +This is a list of extensions included in the module: + +QUAST-5.2.0 + +### QUAST/5.0.2-foss-2020b + +This is a list of extensions included in the module: + +QUAST-5.0.2, simplejson-3.17.2 + +### QUAST/5.0.2-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +QUAST-5.0.2, simplejson-3.17.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qhull.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qhull.md index 68d19febad70..4076c527b10e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qhull.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qhull.md @@ -6,6 +6,10 @@ hide: Qhull ===== + +Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. + +http://www.qhull.org # Available modules @@ -17,7 +21,7 @@ To start using Qhull, load one of these modules using a `module load` command li module load Qhull/2020.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5.md index 7332015264bc..4343effdda46 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5.md @@ -6,6 +6,10 @@ hide: Qt5 === + +Qt is a comprehensive cross-platform C++ application framework. + +https://qt.io/ # Available modules @@ -17,7 +21,7 @@ To start using Qt5, load one of these modules using a `module load` command like module load Qt5/5.15.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5Webkit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5Webkit.md index 5fc647fb485f..d539875ddb05 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5Webkit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5Webkit.md @@ -6,6 +6,10 @@ hide: Qt5Webkit ========= + +Qt Port of WebKit. WebKit is an open source web browser engine. + +https://github.com/qt/qtwebkit # Available modules @@ -17,7 +21,7 @@ To start using Qt5Webkit, load one of these modules using a `module load` comman module load Qt5Webkit/5.212.0-alpha4-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QtKeychain.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QtKeychain.md index 55c1e24abe21..bc7403bb4a07 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QtKeychain.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QtKeychain.md @@ -6,6 +6,10 @@ hide: QtKeychain ========== + +Platform-independent Qt API for storing passwords securely. + +https://github.com/frankosterfeld/qtkeychain # Available modules @@ -17,7 +21,7 @@ To start using QtKeychain, load one of these modules using a `module load` comma module load QtKeychain/0.13.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QtPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QtPy.md index 48cb5f57db1e..4611322bbd53 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QtPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QtPy.md @@ -6,6 +6,10 @@ hide: QtPy ==== + +QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. It provides support for PyQt5, PyQt4, PySide2 and PySide. + +https://github.com/spyder-ide/qtpy # Available modules @@ -17,7 +21,7 @@ To start using QtPy, load one of these modules using a `module load` command lik module load QtPy/2.3.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qtconsole.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qtconsole.md index 3c24148e893a..47f161f4c043 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qtconsole.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qtconsole.md @@ -6,6 +6,10 @@ hide: Qtconsole ========= + +A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more.The Qtconsole is a very lightweight application that largely feels like a terminal, but provides a number of enhancements only possible in a GUI, such as inline figures, proper multiline editing with syntax highlighting, graphical calltips, and more. + +https://jupyter.org/ # Available modules @@ -17,7 +21,7 @@ To start using Qtconsole, load one of these modules using a `module load` comman module load Qtconsole/5.4.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QuPath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QuPath.md index c4880db76c3b..4769891ce553 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QuPath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QuPath.md @@ -6,6 +6,10 @@ hide: QuPath ====== + +QuPath is open source software for bioimage analysis.QuPath is often used for digital pathology applications because it offers a powerful set of tools for working with whole slide images - but it can be applied to lots of other kinds of image as well. + +https://qupath.github.io # Available modules @@ -17,7 +21,7 @@ To start using QuPath, load one of these modules using a `module load` command l module load QuPath/0.5.0-GCCcore-12.3.0-Java-17 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qualimap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qualimap.md index f9e0272c9b92..97ffdb3d1b55 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qualimap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qualimap.md @@ -6,6 +6,10 @@ hide: Qualimap ======== + +Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. + +http://qualimap.bioinfo.cipf.es/ # Available modules @@ -17,7 +21,7 @@ To start using Qualimap, load one of these modules using a `module load` command module load Qualimap/2.2.1-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QuantumESPRESSO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QuantumESPRESSO.md index b8a6feee3194..f7413106692d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QuantumESPRESSO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QuantumESPRESSO.md @@ -6,6 +6,10 @@ hide: QuantumESPRESSO =============== + +Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). + +https://www.quantum-espresso.org # Available modules @@ -17,7 +21,7 @@ To start using QuantumESPRESSO, load one of these modules using a `module load` module load QuantumESPRESSO/7.0-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QuickFF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QuickFF.md index 42eefe835cd9..3c071c428dcb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QuickFF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QuickFF.md @@ -6,6 +6,10 @@ hide: QuickFF ======= + +QuickFF is a Python package developed at the Center forMolecular Modeling (CMM) to quickly derive accurate force fields from ab initiocalculations. + +https://molmod.github.io/QuickFF/ # Available modules @@ -17,7 +21,7 @@ To start using QuickFF, load one of these modules using a `module load` command module load QuickFF/2.2.7-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qwt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qwt.md index 8c08b55ed931..894cbfe0bd39 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qwt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qwt.md @@ -6,6 +6,10 @@ hide: Qwt === + +The Qwt library contains GUI Components and utility classes which are primarily useful for programs with a technical background. + +https://qwt.sourceforge.io/ # Available modules @@ -17,7 +21,7 @@ To start using Qwt, load one of these modules using a `module load` command like module load Qwt/6.2.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/R-INLA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/R-INLA.md index 94c3238646aa..55ce6e2c915c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/R-INLA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/R-INLA.md @@ -6,6 +6,10 @@ hide: R-INLA ====== + +R-INLA is a package in R that do approximate Bayesian inference for Latent Gaussian Models. + +https://www.r-inla.org # Available modules @@ -17,7 +21,7 @@ To start using R-INLA, load one of these modules using a `module load` command l module load R-INLA/24.01.18-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-Bioconductor.md b/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-Bioconductor.md index e2db310a1376..30d080e40986 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-Bioconductor.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-Bioconductor.md @@ -6,6 +6,10 @@ hide: R-bundle-Bioconductor ===================== + +Bioconductor provides tools for the analysis and coprehension of high-throughput genomic data. + +https://bioconductor.org # Available modules @@ -17,7 +21,7 @@ To start using R-bundle-Bioconductor, load one of these modules using a `module module load R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -30,3 +34,58 @@ module load R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2 |R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3|x|x|x|x|x|x| |R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0|-|x|x|-|x|x| |R-bundle-Bioconductor/3.10-foss-2019b|-|x|x|-|x|x| + + +### R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2 + +This is a list of extensions included in the module: + +affxparser-1.74.0, affy-1.80.0, affycoretools-1.74.0, affyio-1.72.0, AgiMicroRna-2.52.0, agricolae-1.3-7, ALDEx2-1.34.0, ALL-1.44.0, ANCOMBC-2.4.0, annaffy-1.74.0, annotate-1.80.0, AnnotationDbi-1.64.1, AnnotationFilter-1.26.0, AnnotationForge-1.44.0, AnnotationHub-3.10.0, anytime-0.3.9, aroma.affymetrix-3.2.1, aroma.apd-0.7.0, aroma.core-3.3.0, aroma.light-3.32.0, ash-1.0-15, ATACseqQC-1.26.0, AUCell-1.24.0, aws.s3-0.3.21, aws.signature-0.6.0, babelgene-22.9, ballgown-2.34.0, basilisk-1.14.2, basilisk.utils-1.14.1, batchelor-1.18.1, baySeq-2.36.0, beachmat-2.18.0, BH-1.84.0-0, Biobase-2.62.0, BiocBaseUtils-1.4.0, BiocFileCache-2.10.1, BiocGenerics-0.48.0, BiocIO-1.12.0, BiocManager-1.30.22, BiocNeighbors-1.20.2, BiocParallel-1.36.0, BiocSingular-1.18.0, BiocStyle-2.30.0, BiocVersion-3.18.1, biomaRt-2.58.0, biomformat-1.30.0, Biostrings-2.70.0, biovizBase-1.50.0, blme-1.0-5, bluster-1.12.0, bookdown-0.37, BSgenome-1.70.1, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.5, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.38.0, bumphunter-1.44.0, ca-0.71.1, CAGEfightR-1.22.0, CAGEr-2.8.0, CAMERA-1.58.0, Category-2.68.0, ccdata-1.28.0, ccmap-1.28.0, CGHbase-1.62.0, CGHcall-2.64.0, ChIPpeakAnno-3.36.0, chromVAR-1.24.0, clusterProfiler-4.10.0, CNEr-1.38.0, coloc-5.2.3, colorRamps-2.3.1, ComplexHeatmap-2.18.0, ConsensusClusterPlus-1.66.0, conumee-1.36.0, crossmeta-1.28.0, cummeRbund-2.44.0, cytolib-2.14.1, CytoML-2.14.0, dada2-1.30.0, ddPCRclust-1.22.0, DECIPHER-2.30.0, DeconRNASeq-1.44.0, decontam-1.22.0, decoupleR-2.8.0, DEGseq-1.56.1, DelayedArray-0.28.0, DelayedMatrixStats-1.24.0, densEstBayes-1.0-2.2, derfinder-1.36.0, derfinderHelper-1.36.0, DESeq2-1.42.0, diffcyt-1.22.0, dir.expiry-1.10.0, directlabels-2024.1.21, DirichletMultinomial-1.44.0, DNABarcodes-1.32.0, DNAcopy-1.76.0, DO.db-2.9, docopt-0.7.1, DOSE-3.28.2, dqrng-0.3.2, DRIMSeq-1.30.0, DropletUtils-1.22.0, DSS-2.50.1, dupRadar-1.32.0, DynDoc-1.80.0, EBImage-4.44.0, edgeR-4.0.12, egg-0.4.5, emmeans-1.10.0, enrichplot-1.22.0, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.26.0, escape-1.12.0, estimability-1.4.1, ExperimentHub-2.10.0, extraDistr-1.10.0, factoextra-1.0.7, fANCOVA-0.6-1, fda-6.1.4, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, feature-1.2.15, fgsea-1.28.0, filelock-1.0.3, flowAI-1.32.0, flowClean-1.40.0, flowClust-3.40.0, flowCore-2.14.0, flowDensity-1.36.1, flowFP-1.60.0, flowMerge-2.50.0, flowPeaks-1.48.0, FlowSOM-2.10.0, FlowSorted.Blood.EPIC-2.6.0, FlowSorted.CordBloodCombined.450k-1.18.0, flowStats-4.14.1, flowViz-1.66.0, flowWorkspace-4.14.2, FRASER-1.14.0, fresh-0.2.0, gcrma-2.74.0, gdsfmt-1.38.0, genefilter-1.84.0, geneLenDataBase-1.38.0, geneplotter-1.80.0, GENESIS-2.32.0, GENIE3-1.24.0, GenomeInfoDb-1.38.5, GenomeInfoDbData-1.2.11, GenomicAlignments-1.38.2, GenomicFeatures-1.54.1, GenomicFiles-1.38.0, GenomicInteractions-1.36.0, GenomicRanges-1.54.1, GenomicScores-2.14.3, GEOmap-2.5-5, GEOquery-2.70.0, ggbio-1.50.0, ggcyto-1.30.0, ggdendro-0.1.23, ggnewscale-0.4.9, ggpointdensity-0.1.0, ggrastr-1.0.2, ggseqlogo-0.1, ggthemes-5.0.0, ggtree-3.10.0, GLAD-2.66.0, Glimma-2.12.0, GlobalAncova-4.20.0, globaltest-5.56.0, GO.db-3.18.0, GOSemSim-2.28.1, goseq-1.54.0, GOstats-2.68.0, graph-1.80.0, graphite-1.48.0, GSEABase-1.64.0, gsmoothr-0.1.7, gson-0.1.0, GSVA-1.50.0, Gviz-1.46.1, GWASExactHW-1.01, GWASTools-1.48.0, HDF5Array-1.30.0, HDO.db-0.99.1, hdrcde-3.4, heatmaply-1.5.0, hgu133plus2.db-3.13.0, HiCBricks-1.20.0, HiCcompare-1.24.0, HMMcopy-1.44.0, Homo.sapiens-1.3.1, IHW-1.30.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.44.0, impute-1.76.0, InteractionSet-1.30.0, interactiveDisplayBase-1.40.0, intervals-0.15.4, IRanges-2.36.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.62.0, KEGGREST-1.42.0, LEA-3.14.0, limma-3.58.1, log4r-0.4.3, lpsymphony-1.30.0, lsa-0.73.3, lumi-2.54.0, M3Drop-1.28.0, marray-1.80.0, maSigPro-1.74.0, MassSpecWavelet-1.68.0, MatrixGenerics-1.14.0, MBA-0.1-0, MEDIPS-1.54.0, MetaboCoreUtils-1.10.0, metagenomeSeq-1.43.0, metaMA-3.1.3, metap-1.9, metapod-1.10.1, MethylSeekR-1.42.0, methylumi-2.48.0, Mfuzz-2.62.0, mia-1.10.0, minfi-1.48.0, missMethyl-1.36.0, mixOmics-6.26.0, mixsqp-0.3-54, MLInterfaces-1.82.0, MotifDb-1.44.0, motifmatchr-1.24.0, motifStack-1.46.0, MsCoreUtils-1.14.1, MsExperiment-1.4.0, MsFeatures-1.10.0, msigdbr-7.5.1, MSnbase-2.28.1, MSstats-4.10.0, MSstatsConvert-1.12.0, MSstatsLiP-1.8.1, MSstatsPTM-2.4.2, MSstatsTMT-2.10.0, MultiAssayExperiment-1.28.0, MultiDataSet-1.30.0, multtest-2.58.0, muscat-1.16.0, mutoss-0.1-13, mzID-1.40.0, mzR-2.36.0, NADA-1.6-1.1, ncdfFlow-2.48.0, NMF-0.26, NOISeq-2.46.0, numbat-1.3.2-1, oligo-1.66.0, oligoClasses-1.64.0, ontologyIndex-2.11, oompaBase-3.2.9, oompaData-3.1.3, openCyto-2.14.0, org.Hs.eg.db-3.18.0, org.Mm.eg.db-3.18.0, org.Rn.eg.db-3.18.0, OrganismDbi-1.44.0, OUTRIDER-1.20.0, pathview-1.42.0, pcaMethods-1.94.0, perm-1.0-0.4, PFAM.db-3.18.0, phyloseq-1.46.0, plyranges-1.22.0, pmp-1.14.0, polyester-1.38.0, poweRlaw-0.70.6, preprocessCore-1.64.0, pRoloc-1.42.0, pRolocdata-1.40.0, pRolocGUI-2.12.0, ProtGenerics-1.34.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.8.1, qap-0.1-2, QDNAseq-1.38.0, QFeatures-1.12.0, qlcMatrix-0.9.7, qqconf-1.3.2, quantsmooth-1.68.0, qvalue-2.34.0, R.devices-2.17.1, R.filesets-2.15.0, R.huge-0.10.1, rainbow-3.8, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.78.0, RcisTarget-1.22.0, RcppAnnoy-0.0.22, RcppHNSW-0.5.0, RcppML-0.3.7, RcppZiggurat-0.1.6, reactome.db-1.86.2, ReactomePA-1.46.0, regioneR-1.34.0, reldist-1.7-2, remaCor-0.0.16, Repitools-1.48.0, ReportingTools-2.42.3, ResidualMatrix-1.12.0, restfulr-0.0.15, Rfast-2.1.0, RFOC-3.4-10, rGADEM-2.50.0, Rgraphviz-2.46.0, rhdf5-2.46.1, rhdf5filters-1.14.1, Rhdf5lib-1.24.1, Rhtslib-2.4.1, Ringo-1.66.0, RNASeqPower-1.42.0, RnBeads-2.20.0, RnBeads.hg19-1.34.0, RnBeads.hg38-1.34.0, RnBeads.mm10-2.10.0, RnBeads.mm9-1.34.0, RnBeads.rn5-1.34.0, ROC-1.78.0, rols-2.30.0, ROntoTools-2.30.0, ropls-1.34.0, RPMG-2.2-7, RProtoBufLib-2.14.0, Rsamtools-2.18.0, RSEIS-4.1-6, Rsubread-2.16.1, rsvd-1.0.5, rtracklayer-1.62.0, Rwave-2.6-5, S4Arrays-1.2.0, S4Vectors-0.40.2, samr-3.0, SamSPECTRAL-1.56.0, SC3-1.30.0, ScaledMatrix-1.10.0, SCANVIS-1.16.0, scater-1.30.1, scattermore-1.2, scDblFinder-1.16.0, scistreer-1.2.0, scran-1.30.2, scrime-1.3.5, scuttle-1.12.0, SeqArray-1.42.0, seqLogo-1.68.0, SeqVarTools-1.40.0, seriation-1.5.4, Seurat-5.0.1, SeuratObject-5.0.1, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.3, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.8.1, ShortRead-1.60.0, siggenes-1.76.0, Signac-1.12.0, simplifyEnrichment-1.12.0, SingleCellExperiment-1.24.0, SingleR-2.4.1, sitmo-2.0.2, slingshot-2.10.0, SMVar-1.3.4, SNPRelate-1.36.0, snpStats-1.52.0, SparseArray-1.2.3, sparseMatrixStats-1.14.0, sparsesvd-0.2-2, SpatialExperiment-1.12.0, Spectra-1.12.0, SPIA-2.54.0, splancs-2.01-44, SPOTlight-1.6.7, stageR-1.24.0, struct-1.14.0, structToolbox-1.14.0, SummarizedExperiment-1.32.0, susieR-0.12.35, sva-3.50.0, TailRank-3.2.2, TFBSTools-1.40.0, TFMPvalue-0.0.9, tkWidgets-1.80.0, TrajectoryUtils-1.10.0, treeio-1.26.0, TreeSummarizedExperiment-2.10.0, TSP-1.2-4, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.30.0, UCell-2.6.2, uwot-0.1.16, variancePartition-1.32.2, VariantAnnotation-1.48.1, venn-1.12, vsn-3.70.0, waiter-0.2.5, wateRmelon-2.8.0, WGCNA-1.72-5, widgetTools-1.80.0, Wrench-1.20.0, xcms-4.0.2, XVector-0.42.0, zCompositions-1.5.0-1, zellkonverter-1.12.1, zlibbioc-1.48.0 + +### R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2 + +This is a list of extensions included in the module: + +affxparser-1.70.0, affy-1.76.0, affycoretools-1.70.0, affyio-1.68.0, AgiMicroRna-2.48.0, agricolae-1.3-5, ALDEx2-1.30.0, ALL-1.40.0, ANCOMBC-2.0.2, annaffy-1.70.0, annotate-1.76.0, AnnotationDbi-1.60.2, AnnotationFilter-1.22.0, AnnotationForge-1.40.1, AnnotationHub-3.6.0, anytime-0.3.9, aroma.affymetrix-3.2.1, aroma.apd-0.6.1, aroma.core-3.3.0, aroma.light-3.28.0, ash-1.0-15, ATACseqQC-1.22.0, AUCell-1.20.2, aws.s3-0.3.21, aws.signature-0.6.0, babelgene-22.9, ballgown-2.30.0, basilisk-1.10.2, basilisk.utils-1.10.0, batchelor-1.14.1, baySeq-2.31.0, beachmat-2.14.0, Biobase-2.58.0, BiocBaseUtils-1.0.0, BiocFileCache-2.6.1, BiocGenerics-0.44.0, BiocIO-1.8.0, BiocManager-1.30.20, BiocNeighbors-1.16.0, BiocParallel-1.32.5, BiocSingular-1.14.0, BiocStyle-2.26.0, BiocVersion-3.16.0, biomaRt-2.54.0, biomformat-1.26.0, Biostrings-2.66.0, biovizBase-1.46.0, blme-1.0-5, bluster-1.8.0, bookdown-0.33, BSgenome-1.66.3, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.5, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.34.0, bumphunter-1.40.0, ca-0.71.1, CAGEr-2.4.0, CAMERA-1.54.0, Category-2.64.0, ccdata-1.24.0, ccmap-1.24.0, CGHbase-1.58.0, CGHcall-2.60.0, ChIPpeakAnno-3.32.0, chromVAR-1.20.2, clusterProfiler-4.6.2, CNEr-1.34.0, coloc-5.1.0.1, colorRamps-2.3.1, ComplexHeatmap-2.14.0, ConsensusClusterPlus-1.62.0, conumee-1.32.0, crossmeta-1.24.0, cummeRbund-2.40.0, cytolib-2.10.1, CytoML-2.10.0, dada2-1.26.0, ddPCRclust-1.18.0, DECIPHER-2.26.0, DeconRNASeq-1.40.0, decontam-1.18.0, decoupleR-2.4.0, DEGseq-1.52.0, DelayedArray-0.24.0, DelayedMatrixStats-1.20.0, densEstBayes-1.0-2.1, derfinder-1.32.0, derfinderHelper-1.32.0, DESeq2-1.38.3, diffcyt-1.18.0, dir.expiry-1.6.0, DirichletMultinomial-1.40.0, DNABarcodes-1.28.0, DNAcopy-1.72.3, DO.db-2.9, docopt-0.7.1, DOSE-3.24.2, dqrng-0.3.0, DRIMSeq-1.26.0, DropletUtils-1.18.1, DSS-2.46.0, dupRadar-1.28.0, DynDoc-1.76.0, EBImage-4.40.0, edgeR-3.40.2, egg-0.4.5, emmeans-1.8.5, enrichplot-1.18.3, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.22.0, escape-1.8.0, estimability-1.4.1, ExperimentHub-2.6.0, extraDistr-1.9.1, fda-6.0.5, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, feature-1.2.15, fgsea-1.24.0, filelock-1.0.2, flowAI-1.28.0, flowClean-1.36.0, flowClust-3.36.0, flowCore-2.10.0, flowDensity-1.32.0, flowFP-1.56.3, flowMerge-2.46.0, flowPeaks-1.44.0, FlowSOM-2.6.0, FlowSorted.Blood.EPIC-2.2.0, FlowSorted.CordBloodCombined.450k-1.14.0, flowStats-4.10.0, flowViz-1.62.0, flowWorkspace-4.10.1, FRASER-1.10.2, fresh-0.2.0, gcrma-2.70.0, gdsfmt-1.34.0, genefilter-1.80.3, geneLenDataBase-1.34.0, geneplotter-1.76.0, GENESIS-2.28.0, GENIE3-1.20.0, GenomeInfoDb-1.34.9, GenomeInfoDbData-1.2.9, GenomicAlignments-1.34.1, GenomicFeatures-1.50.4, GenomicFiles-1.34.0, GenomicRanges-1.50.2, GenomicScores-2.10.0, GEOmap-2.5-0, GEOquery-2.66.0, ggbio-1.46.0, ggcyto-1.26.4, ggdendro-0.1.23, ggnewscale-0.4.8, ggpointdensity-0.1.0, ggrastr-1.0.1, ggseqlogo-0.1, ggthemes-4.2.4, ggtree-3.6.2, GLAD-2.62.0, Glimma-2.8.0, GlobalAncova-4.16.0, globaltest-5.52.0, GO.db-3.16.0, GOSemSim-2.24.0, goseq-1.50.0, GOstats-2.64.0, graph-1.76.0, graphite-1.44.0, GSEABase-1.60.0, gsmoothr-0.1.7, gson-0.1.0, GSVA-1.46.0, Gviz-1.42.1, GWASExactHW-1.01, GWASTools-1.44.0, HDF5Array-1.26.0, HDO.db-0.99.1, hdrcde-3.4, heatmaply-1.4.2, hgu133plus2.db-3.13.0, HiCBricks-1.16.0, HiCcompare-1.20.0, HMMcopy-1.40.0, Homo.sapiens-1.3.1, IHW-1.26.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.40.0, impute-1.72.3, InteractionSet-1.26.1, interactiveDisplayBase-1.36.0, intervals-0.15.4, IRanges-2.32.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.58.3, KEGGREST-1.38.0, LEA-3.10.2, limma-3.54.2, lpsymphony-1.26.3, lsa-0.73.3, lumi-2.50.0, M3Drop-1.24.0, marray-1.76.0, maSigPro-1.70.0, MassSpecWavelet-1.64.1, MatrixGenerics-1.10.0, MBA-0.1-0, MEDIPS-1.50.0, metagenomeSeq-1.40.0, metaMA-3.1.3, metap-1.8, metapod-1.6.0, MethylSeekR-1.38.0, methylumi-2.44.0, Mfuzz-2.58.0, mia-1.6.0, minfi-1.44.0, missMethyl-1.32.0, mixOmics-6.22.0, mixsqp-0.3-48, MLInterfaces-1.78.0, MotifDb-1.40.0, motifmatchr-1.20.0, motifStack-1.42.0, MsCoreUtils-1.10.0, MsFeatures-1.6.0, msigdbr-7.5.1, MSnbase-2.24.2, MultiAssayExperiment-1.24.0, MultiDataSet-1.26.0, multtest-2.54.0, muscat-1.12.1, mutoss-0.1-13, mzID-1.36.0, mzR-2.32.0, NADA-1.6-1.1, ncdfFlow-2.44.0, NMF-0.25, NOISeq-2.42.0, numbat-1.2.2, oligo-1.62.2, oligoClasses-1.60.0, ontologyIndex-2.10, oompaBase-3.2.9, oompaData-3.1.3, openCyto-2.10.1, org.Hs.eg.db-3.16.0, org.Mm.eg.db-3.16.0, org.Rn.eg.db-3.16.0, OrganismDbi-1.40.0, OUTRIDER-1.16.3, pathview-1.38.0, pcaMethods-1.90.0, perm-1.0-0.2, PFAM.db-3.16.0, phyloseq-1.42.0, pmp-1.10.0, polyester-1.34.0, poweRlaw-0.70.6, preprocessCore-1.60.2, pRoloc-1.38.2, pRolocdata-1.36.0, pRolocGUI-2.8.0, ProtGenerics-1.30.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.4.0, qap-0.1-2, QDNAseq-1.34.0, qlcMatrix-0.9.7, qqconf-1.3.1, quantsmooth-1.64.0, qvalue-2.30.0, R.devices-2.17.1, R.filesets-2.15.0, R.huge-0.9.0, rainbow-3.7, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.74.0, RcisTarget-1.18.2, RcppAnnoy-0.0.20, RcppHNSW-0.4.1, RcppML-0.3.7, RcppZiggurat-0.1.6, reactome.db-1.82.0, ReactomePA-1.42.0, regioneR-1.30.0, reldist-1.7-2, remaCor-0.0.11, Repitools-1.44.0, ReportingTools-2.38.0, ResidualMatrix-1.8.0, restfulr-0.0.15, Rfast-2.0.7, RFOC-3.4-6, rGADEM-2.46.0, Rgraphviz-2.42.0, rhdf5-2.42.0, rhdf5filters-1.10.0, Rhdf5lib-1.20.0, Rhtslib-2.0.0, Ringo-1.62.0, RNASeqPower-1.38.0, RnBeads-2.16.0, RnBeads.hg19-1.30.0, RnBeads.hg38-1.30.0, RnBeads.mm10-2.6.0, RnBeads.mm9-1.30.0, RnBeads.rn5-1.30.0, ROC-1.74.0, rols-2.26.0, ROntoTools-2.26.0, ropls-1.30.0, RPMG-2.2-3, RProtoBufLib-2.10.0, Rsamtools-2.14.0, RSEIS-4.1-4, Rsubread-2.12.3, rsvd-1.0.5, rtracklayer-1.58.0, Rwave-2.6-5, S4Vectors-0.36.2, samr-3.0, SamSPECTRAL-1.52.0, SC3-1.26.2, ScaledMatrix-1.6.0, SCANVIS-1.12.0, scater-1.26.1, scattermore-0.8, scDblFinder-1.12.0, scistreer-1.1.0, scran-1.26.2, scrime-1.3.5, scuttle-1.8.4, SeqArray-1.38.0, seqLogo-1.64.0, SeqVarTools-1.36.0, seriation-1.4.2, Seurat-4.3.0, SeuratObject-4.1.3, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.3, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.7.6, ShortRead-1.56.1, siggenes-1.72.0, Signac-1.9.0, simplifyEnrichment-1.8.0, SingleCellExperiment-1.20.0, SingleR-2.0.0, sitmo-2.0.2, slingshot-2.6.0, SMVar-1.3.4, SNPRelate-1.32.2, snpStats-1.48.0, sparseMatrixStats-1.10.0, sparsesvd-0.2-2, SpatialExperiment-1.8.1, SPIA-2.50.0, splancs-2.01-43, SPOTlight-1.2.0, stageR-1.20.0, struct-1.10.0, structToolbox-1.10.1, SummarizedExperiment-1.28.0, susieR-0.12.35, sva-3.46.0, TailRank-3.2.2, TFBSTools-1.36.0, TFMPvalue-0.0.9, tkWidgets-1.76.0, TrajectoryUtils-1.6.0, treeio-1.22.0, TreeSummarizedExperiment-2.6.0, TSP-1.2-3, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.26.1, UCell-2.2.0, uwot-0.1.14, variancePartition-1.28.7, VariantAnnotation-1.44.1, venn-1.11, vsn-3.66.0, waiter-0.2.5, wateRmelon-2.4.0, WGCNA-1.72-1, widgetTools-1.76.0, Wrench-1.16.0, xcms-3.20.0, XVector-0.38.0, zCompositions-1.4.0-1, zellkonverter-1.8.0, zlibbioc-1.44.0 + +### R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +affxparser-1.68.1, affy-1.74.0, affycoretools-1.68.1, affyio-1.66.0, AgiMicroRna-2.46.0, agricolae-1.3-5, ALDEx2-1.28.1, ALL-1.38.0, annaffy-1.68.0, annotate-1.74.0, AnnotationDbi-1.58.0, AnnotationFilter-1.20.0, AnnotationForge-1.38.0, AnnotationHub-3.4.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.26.0, ash-1.0-15, ATACseqQC-1.20.2, AUCell-1.18.1, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.28.0, basilisk-1.8.1, basilisk.utils-1.8.0, batchelor-1.12.3, baySeq-2.30.0, beachmat-2.12.0, Biobase-2.56.0, BiocFileCache-2.4.0, BiocGenerics-0.42.0, BiocIO-1.6.0, BiocManager-1.30.18, BiocNeighbors-1.14.0, BiocParallel-1.30.3, BiocSingular-1.12.0, BiocStyle-2.24.0, BiocVersion-3.15.2, biomaRt-2.52.0, biomformat-1.24.0, Biostrings-2.64.0, biovizBase-1.44.0, blme-1.0-5, bluster-1.6.0, bookdown-0.27, BSgenome-1.64.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.4, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.32.0, bumphunter-1.38.0, CAGEr-2.2.0, CAMERA-1.52.0, Category-2.62.0, ccdata-1.22.0, ccmap-1.22.0, CGHbase-1.56.0, CGHcall-2.58.0, ChIPpeakAnno-3.30.1, chromVAR-1.18.0, clusterProfiler-4.4.4, CNEr-1.32.0, coloc-5.1.0.1, colorRamps-2.3.1, ComplexHeatmap-2.12.0, ConsensusClusterPlus-1.60.0, conumee-1.30.0, crossmeta-1.22.1, cummeRbund-2.38.0, cytolib-2.8.0, CytoML-2.8.0, dada2-1.24.0, ddPCRclust-1.16.0, DeconRNASeq-1.38.0, DEGseq-1.50.0, DelayedArray-0.22.0, DelayedMatrixStats-1.18.0, densEstBayes-1.0-2.1, derfinder-1.30.0, derfinderHelper-1.30.0, DESeq2-1.36.0, diffcyt-1.16.0, dir.expiry-1.4.0, DirichletMultinomial-1.38.0, DNABarcodes-1.26.0, DNAcopy-1.70.0, DO.db-2.9, docopt-0.7.1, DOSE-3.22.1, dqrng-0.3.0, DRIMSeq-1.24.0, DropletUtils-1.16.0, DSS-2.44.0, dupRadar-1.26.1, DynDoc-1.74.0, EBImage-4.38.0, edgeR-3.38.1, egg-0.4.5, emmeans-1.7.5, enrichplot-1.16.2, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.20.2, estimability-1.4, ExperimentHub-2.4.0, extraDistr-1.9.1, fda-6.0.5, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, feature-1.2.15, fgsea-1.22.0, filelock-1.0.2, flowAI-1.26.0, flowClean-1.34.1, flowClust-3.34.0, flowCore-2.8.0, flowDensity-1.30.0, flowFP-1.54.0, flowMerge-2.44.0, flowPeaks-1.42.0, FlowSOM-2.4.0, FlowSorted.Blood.EPIC-2.0.0, FlowSorted.CordBloodCombined.450k-1.12.0, flowStats-4.8.0, flowViz-1.60.2, flowWorkspace-4.8.0, FRASER-1.8.1, fresh-0.2.0, gcrma-2.68.0, gdsfmt-1.32.0, genefilter-1.78.0, geneLenDataBase-1.32.0, geneplotter-1.74.0, GENESIS-2.26.0, GENIE3-1.18.0, GenomeInfoDb-1.32.2, GenomeInfoDbData-1.2.8, GenomicAlignments-1.32.0, GenomicFeatures-1.48.3, GenomicFiles-1.32.1, GenomicRanges-1.48.0, GenomicScores-2.8.2, GEOmap-2.5-0, GEOquery-2.64.2, ggbio-1.44.1, ggcyto-1.24.1, ggdendro-0.1.23, ggnewscale-0.4.7, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, ggtree-3.4.4, GLAD-2.60.0, Glimma-2.6.0, GlobalAncova-4.14.0, globaltest-5.50.0, GO.db-3.15.0, GOSemSim-2.22.0, goseq-1.48.0, GOstats-2.62.0, graph-1.74.0, graphite-1.42.0, GSEABase-1.58.0, gsmoothr-0.1.7, GSVA-1.44.2, Gviz-1.40.1, GWASExactHW-1.01, GWASTools-1.42.0, HDF5Array-1.24.1, hdrcde-3.4, heatmaply-1.3.0, hgu133plus2.db-3.13.0, HiCBricks-1.14.0, HiCcompare-1.18.0, HMMcopy-1.38.0, Homo.sapiens-1.3.1, IHW-1.24.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.38.0, impute-1.70.0, InteractionSet-1.24.0, interactiveDisplayBase-1.34.0, IRanges-2.30.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.56.0, KEGGREST-1.36.2, LEA-3.8.0, limma-3.52.2, lpsymphony-1.24.0, lsa-0.73.3, lumi-2.48.0, M3Drop-1.22.0, marray-1.74.0, maSigPro-1.68.0, MassSpecWavelet-1.62.0, MatrixGenerics-1.8.1, MBA-0.1-0, MEDIPS-1.48.0, metagenomeSeq-1.38.0, metaMA-3.1.3, metap-1.8, metapod-1.4.0, MethylSeekR-1.36.0, methylumi-2.42.0, Mfuzz-2.56.0, minfi-1.42.0, missMethyl-1.30.0, mixOmics-6.20.0, mixsqp-0.3-43, MLInterfaces-1.76.0, MotifDb-1.38.0, motifmatchr-1.18.0, motifStack-1.40.0, MsCoreUtils-1.8.0, MsFeatures-1.4.0, MSnbase-2.22.0, MultiAssayExperiment-1.22.0, MultiDataSet-1.24.0, multtest-2.52.0, muscat-1.10.1, mutoss-0.1-12, mzID-1.34.0, mzR-2.30.0, NADA-1.6-1.1, ncdfFlow-2.42.1, NMF-0.24.0, NOISeq-2.40.0, numbat-1.1.0, oligo-1.60.0, oligoClasses-1.58.0, ontologyIndex-2.7, openCyto-2.8.2, org.Hs.eg.db-3.15.0, org.Mm.eg.db-3.15.0, org.Rn.eg.db-3.15.0, OrganismDbi-1.38.1, OUTRIDER-1.14.0, pathview-1.36.0, pcaMethods-1.88.0, perm-1.0-0.2, PFAM.db-3.15.0, phyloseq-1.40.0, pmp-1.8.0, polyester-1.32.0, poweRlaw-0.70.6, preprocessCore-1.58.0, pRoloc-1.36.0, pRolocdata-1.34.0, pRolocGUI-2.6.0, ProtGenerics-1.28.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.2.0, qap-0.1-2, QDNAseq-1.32.0, qlcMatrix-0.9.7, qqconf-1.2.3, quantsmooth-1.62.0, qvalue-2.28.0, R.devices-2.17.1, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.72.0, RcisTarget-1.16.0, RcppAnnoy-0.0.19, RcppHNSW-0.3.0, RcppML-0.3.7, RcppZiggurat-0.1.6, reactome.db-1.81.0, ReactomePA-1.40.0, regioneR-1.28.0, reldist-1.7-1, Repitools-1.42.0, ReportingTools-2.36.0, ResidualMatrix-1.6.0, restfulr-0.0.15, Rfast-2.0.6, RFOC-3.4-6, rGADEM-2.44.0, Rgraphviz-2.40.0, rhdf5-2.40.0, rhdf5filters-1.8.0, Rhdf5lib-1.18.2, Rhtslib-1.28.0, Ringo-1.60.0, RNASeqPower-1.36.0, ROC-1.72.0, rols-2.24.2, ROntoTools-2.24.0, ropls-1.28.2, RPMG-2.2-3, RProtoBufLib-2.8.0, Rsamtools-2.12.0, RSEIS-4.1-4, Rsubread-2.10.4, rsvd-1.0.5, rtracklayer-1.56.1, Rwave-2.6-5, S4Vectors-0.34.0, samr-3.0, SamSPECTRAL-1.50.0, SC3-1.24.0, ScaledMatrix-1.4.0, SCANVIS-1.10.0, scater-1.24.0, scattermore-0.8, scDblFinder-1.10.0, scistreer-1.0.1, scran-1.24.0, scrime-1.3.5, scuttle-1.6.2, SeqArray-1.36.2, seqLogo-1.62.0, SeqVarTools-1.34.0, seriation-1.3.5, Seurat-4.1.1, SeuratObject-4.1.0, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.2, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.7.0, ShortRead-1.54.0, siggenes-1.70.0, Signac-1.7.0, simplifyEnrichment-1.6.1, SingleCellExperiment-1.18.0, SingleR-1.10.0, sitmo-2.0.2, SMVar-1.3.4, SNPRelate-1.30.1, snpStats-1.46.0, sparseMatrixStats-1.8.0, sparsesvd-0.2, SpatialExperiment-1.6.1, SPIA-2.48.0, splancs-2.01-43, SPOTlight-1.0.0, stageR-1.18.0, struct-1.8.0, structToolbox-1.8.0, SummarizedExperiment-1.26.1, susieR-0.12.16, sva-3.44.0, TFBSTools-1.34.0, TFMPvalue-0.0.8, tkWidgets-1.74.0, treeio-1.20.2, TSP-1.2-0, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.24.0, uwot-0.1.11, variancePartition-1.26.0, VariantAnnotation-1.42.1, venn-1.11, vsn-3.64.0, waiter-0.2.5, wateRmelon-2.2.0, WGCNA-1.71, widgetTools-1.74.0, Wrench-1.14.0, xcms-3.18.0, XVector-0.36.0, zCompositions-1.4.0-1, zellkonverter-1.6.5, zlibbioc-1.42.0 + +### R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0 + +This is a list of extensions included in the module: + +admisc-0.27, affxparser-1.68.1, affy-1.74.0, affycoretools-1.68.0, affyio-1.66.0, AgiMicroRna-2.46.0, agricolae-1.3-5, ALDEx2-1.28.0, ALL-1.38.0, annaffy-1.68.0, annotate-1.74.0, AnnotationDbi-1.58.0, AnnotationFilter-1.20.0, AnnotationForge-1.38.0, AnnotationHub-3.4.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.26.0, ash-1.0-15, ATACseqQC-1.20.2, AUCell-1.18.0, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.28.0, batchelor-1.12.0, baySeq-2.30.0, beachmat-2.12.0, Biobase-2.56.0, BiocFileCache-2.4.0, BiocGenerics-0.42.0, BiocIO-1.6.0, BiocManager-1.30.17, BiocNeighbors-1.14.0, BiocParallel-1.30.0, BiocSingular-1.12.0, BiocStyle-2.24.0, BiocVersion-3.15.2, biomaRt-2.52.0, biomformat-1.24.0, Biostrings-2.64.0, biovizBase-1.44.0, blme-1.0-5, bluster-1.6.0, bookdown-0.26, BSgenome-1.64.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.4, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.32.0, bumphunter-1.38.0, CAGEr-2.2.0, CAMERA-1.52.0, Category-2.62.0, ccdata-1.22.0, ccmap-1.22.0, CGHbase-1.56.0, CGHcall-2.58.0, ChIPpeakAnno-3.30.0, chromVAR-1.18.0, CNEr-1.32.0, coloc-5.1.0, colorRamps-2.3.1, ComplexHeatmap-2.12.0, ConsensusClusterPlus-1.60.0, conumee-1.30.0, crossmeta-1.22.0, cummeRbund-2.38.0, cytolib-2.8.0, CytoML-2.8.0, dada2-1.24.0, DeconRNASeq-1.38.0, DEGseq-1.50.0, DelayedArray-0.22.0, DelayedMatrixStats-1.18.0, densEstBayes-1.0-2.1, derfinder-1.30.0, derfinderHelper-1.30.0, DESeq2-1.36.0, diffcyt-1.16.0, DirichletMultinomial-1.38.0, DNABarcodes-1.26.0, DNAcopy-1.70.0, docopt-0.7.1, dqrng-0.3.0, DRIMSeq-1.24.0, DropletUtils-1.16.0, DSS-2.44.0, dupRadar-1.26.0, DynDoc-1.74.0, EBImage-4.38.0, edgeR-3.38.0, egg-0.4.5, emmeans-1.7.3, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.20.1, estimability-1.3, ExperimentHub-2.4.0, extraDistr-1.9.1, fda-6.0.3, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.22.0, filelock-1.0.2, flowClust-3.34.0, flowCore-2.8.0, FlowSOM-2.4.0, FlowSorted.Blood.EPIC-2.0.0, FlowSorted.CordBloodCombined.450k-1.12.0, flowStats-4.8.0, flowViz-1.60.0, flowWorkspace-4.8.0, FRASER-1.8.0, fresh-0.2.0, gcrma-2.68.0, gdsfmt-1.32.0, genefilter-1.78.0, geneLenDataBase-1.32.0, geneplotter-1.74.0, GENESIS-2.26.0, GENIE3-1.18.0, GenomeInfoDb-1.32.1, GenomeInfoDbData-1.2.8, GenomicAlignments-1.32.0, GenomicFeatures-1.48.0, GenomicFiles-1.32.0, GenomicRanges-1.48.0, GenomicScores-2.8.0, GEOquery-2.64.0, ggbio-1.44.0, ggcyto-1.24.0, ggdendro-0.1.23, ggnewscale-0.4.7, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.60.0, Glimma-2.6.0, GlobalAncova-4.14.0, globaltest-5.50.0, GO.db-3.15.0, goseq-1.48.0, GOstats-2.62.0, graph-1.74.0, GSEABase-1.58.0, gsmoothr-0.1.7, GSVA-1.44.0, Gviz-1.40.0, GWASExactHW-1.01, GWASTools-1.42.0, HDF5Array-1.24.0, hdrcde-3.4, heatmaply-1.3.0, hgu133plus2.db-3.13.0, HiCcompare-1.18.0, HMMcopy-1.38.0, Homo.sapiens-1.3.1, IHW-1.24.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.38.0, impute-1.70.0, InteractionSet-1.24.0, interactiveDisplayBase-1.34.0, IRanges-2.30.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.56.0, KEGGREST-1.36.0, LEA-3.8.0, limma-3.52.0, lpsymphony-1.24.0, lsa-0.73.2, lumi-2.48.0, M3Drop-1.22.0, marray-1.74.0, maSigPro-1.68.0, MassSpecWavelet-1.62.0, MatrixGenerics-1.8.0, MEDIPS-1.48.0, metagenomeSeq-1.38.0, metaMA-3.1.3, metap-1.8, metapod-1.4.0, MethylSeekR-1.36.0, methylumi-2.42.0, Mfuzz-2.56.0, minfi-1.42.0, missMethyl-1.30.0, mixOmics-6.20.0, mixsqp-0.3-43, MLInterfaces-1.76.0, MotifDb-1.38.0, motifmatchr-1.18.0, motifStack-1.40.0, MsCoreUtils-1.8.0, MsFeatures-1.4.0, MSnbase-2.22.0, MultiAssayExperiment-1.22.0, MultiDataSet-1.24.0, multtest-2.52.0, muscat-1.10.0, mutoss-0.1-12, mzID-1.34.0, mzR-2.30.0, NADA-1.6-1.1, ncdfFlow-2.42.0, NMF-0.24.0, NOISeq-2.40.0, oligo-1.60.0, oligoClasses-1.58.0, ontologyIndex-2.7, openCyto-2.8.0, org.Hs.eg.db-3.15.0, org.Mm.eg.db-3.15.0, org.Rn.eg.db-3.15.0, OrganismDbi-1.38.0, OUTRIDER-1.14.0, pathview-1.36.0, pcaMethods-1.88.0, perm-1.0-0.2, PFAM.db-3.15.0, phyloseq-1.40.0, pmp-1.8.0, polyester-1.32.0, poweRlaw-0.70.6, preprocessCore-1.58.0, pRoloc-1.36.0, pRolocdata-1.34.0, pRolocGUI-2.6.0, ProtGenerics-1.28.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.2.0, qap-0.1-1, QDNAseq-1.32.0, qlcMatrix-0.9.7, qqconf-1.2.3, quantsmooth-1.62.0, qvalue-2.28.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.72.0, RcisTarget-1.16.0, RcppAnnoy-0.0.19, RcppHNSW-0.3.0, RcppML-0.3.7, RcppZiggurat-0.1.6, regioneR-1.28.0, reldist-1.7-0, Repitools-1.42.0, ReportingTools-2.36.0, ResidualMatrix-1.6.0, restfulr-0.0.13, Rfast-2.0.6, rGADEM-2.44.0, Rgraphviz-2.40.0, rhdf5-2.40.0, rhdf5filters-1.8.0, Rhdf5lib-1.18.0, RhpcBLASctl-0.21-247.1, Rhtslib-1.28.0, Ringo-1.60.0, RNASeqPower-1.36.0, ROC-1.72.0, rols-2.24.0, ROntoTools-2.24.0, ropls-1.28.0, RProtoBufLib-2.8.0, Rsamtools-2.12.0, Rsubread-2.10.0, rsvd-1.0.5, rtracklayer-1.56.0, S4Vectors-0.34.0, samr-3.0, SC3-1.24.0, ScaledMatrix-1.4.0, SCANVIS-1.10.0, scater-1.24.0, scattermore-0.8, scDblFinder-1.10.0, scran-1.24.0, scrime-1.3.5, scuttle-1.6.0, SeqArray-1.36.0, seqLogo-1.62.0, SeqVarTools-1.34.0, seriation-1.3.5, Seurat-4.1.1, SeuratObject-4.1.0, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.1, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.6.4, ShortRead-1.54.0, siggenes-1.70.0, Signac-1.6.0, SingleCellExperiment-1.18.0, SingleR-1.10.0, sitmo-2.0.2, SMVar-1.3.4, SNPRelate-1.30.0, snpStats-1.46.0, sparseMatrixStats-1.8.0, sparsesvd-0.2, SPIA-2.48.0, SPOTlight-1.0.0, stageR-1.18.0, struct-1.8.0, structToolbox-1.8.0, SummarizedExperiment-1.26.1, susieR-0.11.92, sva-3.44.0, TFBSTools-1.34.0, TFMPvalue-0.0.8, tkWidgets-1.74.0, TSP-1.2-0, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.24.0, uwot-0.1.11, variancePartition-1.26.0, VariantAnnotation-1.42.0, venn-1.10, vsn-3.64.0, waiter-0.2.5, wateRmelon-2.2.0, WGCNA-1.71, widgetTools-1.74.0, Wrench-1.14.0, xcms-3.18.0, XVector-0.36.0, zCompositions-1.4.0-1, zlibbioc-1.42.0 + +### R-bundle-Bioconductor/3.14-foss-2021b-R-4.1.2 + +This is a list of extensions included in the module: + +admisc-0.19, affxparser-1.66.0, affy-1.72.0, affycoretools-1.66.0, affyio-1.64.0, AgiMicroRna-2.44.0, agricolae-1.3-5, ALDEx2-1.26.0, ALL-1.36.0, annaffy-1.66.0, annotate-1.72.0, AnnotationDbi-1.56.1, AnnotationFilter-1.18.0, AnnotationForge-1.36.0, AnnotationHub-3.2.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.24.0, ash-1.0-15, ATACseqQC-1.18.0, AUCell-1.16.0, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.26.0, batchelor-1.10.0, baySeq-2.28.0, beachmat-2.10.0, Biobase-2.54.0, BiocFileCache-2.2.0, BiocGenerics-0.40.0, BiocIO-1.4.0, BiocManager-1.30.16, BiocNeighbors-1.12.0, BiocParallel-1.28.0, BiocSingular-1.10.0, BiocStyle-2.22.0, BiocVersion-3.14.0, biomaRt-2.50.0, biomformat-1.22.0, Biostrings-2.62.0, biovizBase-1.42.0, blme-1.0-5, bluster-1.4.0, bookdown-0.24, BSgenome-1.62.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.4, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.30.0, bumphunter-1.36.0, CAMERA-1.50.0, Category-2.60.0, ccdata-1.20.0, ccmap-1.20.0, CGHbase-1.54.0, ChIPpeakAnno-3.28.0, chromVAR-1.16.0, CNEr-1.30.0, coloc-5.1.0, colorRamps-2.3, ComplexHeatmap-2.10.0, ConsensusClusterPlus-1.58.0, conumee-1.28.0, crossmeta-1.20.0, cummeRbund-2.36.0, cytolib-2.6.0, CytoML-2.6.0, dada2-1.22.0, DeconRNASeq-1.36.0, DEGseq-1.48.0, DelayedArray-0.20.0, DelayedMatrixStats-1.16.0, derfinder-1.28.0, derfinderHelper-1.28.0, DESeq2-1.34.0, diffcyt-1.14.0, DirichletMultinomial-1.36.0, DNABarcodes-1.24.0, DNAcopy-1.68.0, docopt-0.7.1, dqrng-0.3.0, DRIMSeq-1.22.0, DropletUtils-1.14.0, DSS-2.42.0, dupRadar-1.24.0, DynDoc-1.72.0, EBImage-4.36.0, edgeR-3.36.0, egg-0.4.5, emmeans-1.7.0, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.18.0, estimability-1.3, ExperimentHub-2.2.0, extraDistr-1.9.1, fda-5.5.0, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.20.0, filelock-1.0.2, flowClust-3.32.0, flowCore-2.6.0, FlowSOM-2.2.0, FlowSorted.Blood.EPIC-1.12.1, FlowSorted.CordBloodCombined.450k-1.10.0, flowStats-4.6.0, flowViz-1.58.0, flowWorkspace-4.6.0, FRASER-1.6.0, fresh-0.2.0, gcrma-2.66.0, gdsfmt-1.30.0, GenABEL-1.8-0, GenABEL.data-1.0.0, genefilter-1.76.0, geneLenDataBase-1.30.0, geneplotter-1.72.0, GENESIS-2.24.0, GENIE3-1.16.0, GenomeInfoDb-1.30.0, GenomeInfoDbData-1.2.7, GenomicAlignments-1.30.0, GenomicFeatures-1.46.1, GenomicFiles-1.30.0, GenomicRanges-1.46.0, GenomicScores-2.6.0, GEOquery-2.62.0, ggbio-1.41.0, ggcyto-1.22.0, ggdendro-0.1.22, ggnewscale-0.4.5, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.58.0, Glimma-2.4.0, GlobalAncova-4.12.0, globaltest-5.48.0, GO.db-3.14.0, goseq-1.46.0, GOstats-2.60.0, graph-1.72.0, GSEABase-1.56.0, gsmoothr-0.1.7, GSVA-1.42.0, Gviz-1.38.0, GWASExactHW-1.01, GWASTools-1.40.0, HDF5Array-1.22.0, hdrcde-3.4, heatmaply-1.3.0, hgu133plus2.db-3.13.0, HMMcopy-1.36.0, Homo.sapiens-1.3.1, IHW-1.22.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.36.0, impute-1.68.0, InteractionSet-1.22.0, interactiveDisplayBase-1.32.0, IRanges-2.28.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.54.0, KEGGREST-1.34.0, LEA-3.6.0, limma-3.50.0, lpsymphony-1.22.0, lsa-0.73.2, lumi-2.46.0, M3Drop-1.20.0, marray-1.72.0, maSigPro-1.66.0, MassSpecWavelet-1.60.0, mathjaxr-1.4-0, MatrixGenerics-1.6.0, MEDIPS-1.46.0, metagenomeSeq-1.36.0, metaMA-3.1.2, metap-1.5, metapod-1.2.0, MethylSeekR-1.34.0, methylumi-2.39.0, Mfuzz-2.54.0, minfi-1.40.0, missMethyl-1.28.0, mixOmics-6.17.26, mixsqp-0.3-43, MLInterfaces-1.74.0, MotifDb-1.36.0, motifmatchr-1.16.0, motifStack-1.38.0, MsCoreUtils-1.6.0, MsFeatures-1.2.0, MSnbase-2.20.0, MultiDataSet-1.22.0, multtest-2.50.0, muscat-1.8.0, mutoss-0.1-12, mzID-1.32.0, mzR-2.28.0, NADA-1.6-1.1, ncdfFlow-2.40.0, NMF-0.23.0, NOISeq-2.38.0, oligo-1.58.0, oligoClasses-1.56.0, ontologyIndex-2.7, openCyto-2.6.0, org.Hs.eg.db-3.14.0, org.Mm.eg.db-3.14.0, org.Rn.eg.db-3.14.0, OrganismDbi-1.36.0, OUTRIDER-1.12.0, pathview-1.34.0, pcaMethods-1.86.0, perm-1.0-0.2, PFAM.db-3.14.0, phyloseq-1.38.0, pmp-1.6.0, polyester-1.30.0, poweRlaw-0.70.6, preprocessCore-1.56.0, pRoloc-1.34.0, pRolocdata-1.32.0, pRolocGUI-2.4.0, ProtGenerics-1.26.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.0.0, qap-0.1-1, qlcMatrix-0.9.7, quantsmooth-1.60.0, qvalue-2.26.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.70.0, RcisTarget-1.14.0, RcppAnnoy-0.0.19, RcppHNSW-0.3.0, RcppZiggurat-0.1.6, regioneR-1.26.0, reldist-1.6-6, Repitools-1.40.0, ReportingTools-2.34.0, ResidualMatrix-1.4.0, restfulr-0.0.13, Rfast-2.0.3, rGADEM-2.42.0, Rgraphviz-2.38.0, rhdf5-2.38.0, rhdf5filters-1.6.0, Rhdf5lib-1.16.0, Rhtslib-1.26.0, Ringo-1.58.0, RNASeqPower-1.34.0, ROC-1.70.0, rols-2.22.0, ropls-1.26.0, RProtoBufLib-2.6.0, Rsamtools-2.10.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.8.0, rsvd-1.0.5, rtracklayer-1.54.0, S4Vectors-0.32.0, samr-3.0, SC3-1.22.0, ScaledMatrix-1.2.0, SCANVIS-1.7.0, scater-1.22.0, scattermore-0.7, scran-1.22.0, scrime-1.3.5, sctransform-0.3.2, scuttle-1.4.0, SeqArray-1.34.0, seqLogo-1.60.0, SeqVarTools-1.32.0, seriation-1.3.1, Seurat-4.0.5, SeuratObject-4.0.2, shinyBS-0.61, shinydashboardPlus-2.0.3, shinyFiles-0.9.0, shinyhelper-0.3.2, shinypanel-0.1.4, shinyWidgets-0.6.2, ShortRead-1.52.0, siggenes-1.68.0, Signac-1.4.0, SingleCellExperiment-1.16.0, SingleR-1.8.0, sitmo-2.0.2, SMVar-1.3.3, SNPRelate-1.28.0, snpStats-1.44.0, sparseMatrixStats-1.6.0, sparsesvd-0.2, SPIA-2.46.0, stageR-1.16.0, struct-1.6.0, structToolbox-1.6.0, SummarizedExperiment-1.24.0, susieR-0.11.42, sva-3.42.0, TFBSTools-1.32.0, TFMPvalue-0.0.8, tkWidgets-1.72.0, truncnorm-1.0-8, TSP-1.1-11, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.22.0, uwot-0.1.10, variancePartition-1.24.0, VariantAnnotation-1.40.0, venn-1.10, vsn-3.62.0, waiter-0.2.4, wateRmelon-2.0.0, WGCNA-1.70-3, widgetTools-1.72.0, Wrench-1.12.0, xcms-3.16.0, XVector-0.34.0, zCompositions-1.3.4, zlibbioc-1.40.0 + +### R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0 + +This is a list of extensions included in the module: + +admisc-0.15, affxparser-1.64.0, affy-1.70.0, affycoretools-1.64.0, affyio-1.62.0, AgiMicroRna-2.42.0, agricolae-1.3-3, ALDEx2-1.24.0, ALL-1.34.0, annaffy-1.63.1, annotate-1.70.0, AnnotationDbi-1.54.0, AnnotationFilter-1.16.0, AnnotationForge-1.34.0, AnnotationHub-3.0.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.22.0, ash-1.0-15, ATACseqQC-1.16.0, AUCell-1.14.0, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.24.0, batchelor-1.8.0, baySeq-2.26.0, beachmat-2.8.0, Biobase-2.52.0, BiocFileCache-2.0.0, BiocGenerics-0.38.0, BiocIO-1.2.0, BiocManager-1.30.15, BiocNeighbors-1.10.0, BiocParallel-1.26.0, BiocSingular-1.8.0, BiocStyle-2.20.0, BiocVersion-3.13.1, biomaRt-2.48.0, biomformat-1.20.0, Biostrings-2.60.0, biovizBase-1.40.0, blme-1.0-5, bluster-1.2.1, bookdown-0.22, BSgenome-1.60.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.3, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.34.0, CAMERA-1.48.0, Category-2.58.0, ccdata-1.18.0, ccmap-1.18.0, CGHbase-1.52.0, ChIPpeakAnno-3.26.0, CNEr-1.28.0, coloc-3.2-1, colorRamps-2.3, ComplexHeatmap-2.8.0, ConsensusClusterPlus-1.56.0, conumee-1.26.0, crossmeta-1.18.0, cummeRbund-2.34.0, cytolib-2.4.0, CytoML-2.4.0, dada2-1.20.0, DeconRNASeq-1.34.0, DEGseq-1.46.0, DelayedArray-0.18.0, DelayedMatrixStats-1.14.0, derfinder-1.26.0, derfinderHelper-1.26.0, DESeq2-1.32.0, diffcyt-1.12.0, DirichletMultinomial-1.34.0, DNAcopy-1.66.0, docopt-0.7.1, dqrng-0.3.0, DRIMSeq-1.20.0, DropletUtils-1.12.1, dupRadar-1.22.0, DynDoc-1.70.0, EBImage-4.34.0, edgeR-3.34.0, egg-0.4.5, emmeans-1.6.1, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.16.0, estimability-1.3, ExperimentHub-2.0.0, extraDistr-1.9.1, fda-5.1.9, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.18.0, filelock-1.0.2, flowClust-3.30.0, flowCore-2.4.0, FlowSOM-2.0.0, FlowSorted.Blood.EPIC-1.10.1, FlowSorted.CordBloodCombined.450k-1.8.0, flowStats-4.4.0, flowViz-1.56.0, flowWorkspace-4.4.0, FRASER-1.4.0, fresh-0.2.0, gcrma-2.64.0, gdsfmt-1.28.0, GenABEL-1.8-0, GenABEL.data-1.0.0, genefilter-1.74.0, geneLenDataBase-1.28.0, geneplotter-1.70.0, GENESIS-2.22.0, GENIE3-1.14.0, GenomeInfoDb-1.28.0, GenomeInfoDbData-1.2.6, GenomicAlignments-1.28.0, GenomicFeatures-1.44.0, GenomicFiles-1.28.0, GenomicRanges-1.44.0, GenomicScores-2.4.0, GEOquery-2.60.0, ggbio-1.40.0, ggcyto-1.20.0, ggdendro-0.1.22, ggnewscale-0.4.5, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.56.0, Glimma-2.2.0, GlobalAncova-4.10.0, globaltest-5.46.0, GO.db-3.13.0, goseq-1.44.0, GOstats-2.58.0, graph-1.70.0, GSEABase-1.54.0, gsmoothr-0.1.7, GSVA-1.40.0, Gviz-1.36.1, GWASExactHW-1.01, GWASTools-1.38.0, HDF5Array-1.20.0, hdrcde-3.4, heatmaply-1.2.1, hgu133plus2.db-3.13.0, HMMcopy-1.34.0, Homo.sapiens-1.3.1, IHW-1.20.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.34.0, impute-1.66.0, InteractionSet-1.20.0, interactiveDisplayBase-1.30.0, IRanges-2.26.0, isva-1.9, JASPAR2020-0.99.10, KEGG.db-3.2.4, KEGGgraph-1.52.0, KEGGREST-1.32.0, LEA-3.4.0, limma-3.48.0, lpsymphony-1.20.0, lsa-0.73.2, lumi-2.44.0, marray-1.70.0, maSigPro-1.64.0, MassSpecWavelet-1.58.0, mathjaxr-1.4-0, MatrixGenerics-1.4.0, MEDIPS-1.44.0, metagenomeSeq-1.34.0, metaMA-3.1.2, metap-1.4, metapod-1.0.0, MethylSeekR-1.32.0, methylumi-2.38.0, Mfuzz-2.52.0, minfi-1.38.0, missMethyl-1.26.0, mixOmics-6.16.0, MLInterfaces-1.72.0, MotifDb-1.34.0, motifmatchr-1.14.0, motifStack-1.36.0, MsCoreUtils-1.4.0, MSnbase-2.18.0, MultiDataSet-1.20.0, multtest-2.48.0, muscat-1.6.0, mutoss-0.1-12, mzID-1.30.0, mzR-2.26.0, NADA-1.6-1.1, ncdfFlow-2.38.0, NMF-0.23.0, NOISeq-2.36.0, oligo-1.56.0, oligoClasses-1.54.0, ontologyIndex-2.7, openCyto-2.4.0, org.Hs.eg.db-3.13.0, org.Mm.eg.db-3.13.0, org.Rn.eg.db-3.13.0, OrganismDbi-1.34.0, OUTRIDER-1.10.0, pcaMethods-1.84.0, perm-1.0-0.0, PFAM.db-3.13.0, phyloseq-1.36.0, pmp-1.4.0, polyester-1.28.0, poweRlaw-0.70.6, preprocessCore-1.54.0, pRoloc-1.32.0, pRolocdata-1.30.0, pRolocGUI-2.2.0, ProtGenerics-1.24.0, PRROC-1.3.1, PSCBS-0.65.0, PureCN-1.22.1, qap-0.1-1, qlcMatrix-0.9.7, quantsmooth-1.58.0, qvalue-2.24.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.68.0, RcisTarget-1.12.0, RcppAnnoy-0.0.18, RcppHNSW-0.3.0, RcppZiggurat-0.1.6, regioneR-1.24.0, Repitools-1.38.0, ReportingTools-2.32.0, ResidualMatrix-1.2.0, restfulr-0.0.13, Rfast-2.0.3, rGADEM-2.40.0, Rgraphviz-2.36.0, rhdf5-2.36.0, rhdf5filters-1.4.0, Rhdf5lib-1.14.0, Rhtslib-1.24.0, Ringo-1.56.0, RNASeqPower-1.32.0, ROC-1.68.0, ropls-1.24.0, RProtoBufLib-2.4.0, Rsamtools-2.8.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.6.1, rsvd-1.0.5, rtracklayer-1.52.0, S4Vectors-0.30.0, samr-3.0, SC3-1.20.0, ScaledMatrix-1.0.0, SCANVIS-1.6.0, scater-1.20.0, scattermore-0.7, scran-1.20.1, scrime-1.3.5, sctransform-0.3.2, scuttle-1.2.0, SeqArray-1.32.0, seqLogo-1.58.0, SeqVarTools-1.30.0, seriation-1.2-9, Seurat-4.0.3, SeuratObject-4.0.2, shinyBS-0.61, shinydashboardPlus-2.0.1, shinyFiles-0.9.0, shinyhelper-0.3.2, shinypanel-0.1.4, shinyWidgets-0.6.0, ShortRead-1.50.0, siggenes-1.66.0, Signac-1.2.1, SingleCellExperiment-1.14.1, SingleR-1.6.1, sitmo-2.0.1, SMVar-1.3.3, SNPRelate-1.26.0, snpStats-1.42.0, sparseMatrixStats-1.4.0, sparsesvd-0.2, SPIA-2.44.0, stageR-1.14.0, struct-1.4.0, structToolbox-1.4.0, SummarizedExperiment-1.22.0, sva-3.40.0, TFBSTools-1.30.0, TFMPvalue-0.0.8, tkWidgets-1.70.0, truncnorm-1.0-8, TSP-1.1-10, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.20.0, uwot-0.1.10, variancePartition-1.22.0, VariantAnnotation-1.38.0, venn-1.10, vsn-3.60.0, waiter-0.2.1, wateRmelon-1.36.0, widgetTools-1.70.0, Wrench-1.10.0, xcms-3.14.0, XVector-0.32.0, zCompositions-1.3.4, zlibbioc-1.38.0 + +### R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: + +admisc-0.11, affxparser-1.62.0, affy-1.68.0, affycoretools-1.62.0, affyio-1.60.0, AgiMicroRna-2.40.0, agricolae-1.3-3, ALDEx2-1.22.0, ALL-1.32.0, annaffy-1.62.0, annotate-1.68.0, AnnotationDbi-1.52.0, AnnotationFilter-1.14.0, AnnotationForge-1.32.0, AnnotationHub-2.22.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.20.0, ash-1.0-15, ATACseqQC-1.14.4, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.22.0, batchelor-1.6.2, baySeq-2.24.0, beachmat-2.6.4, BH-1.75.0-0, Biobase-2.50.0, BiocFileCache-1.14.0, BiocGenerics-0.36.0, BiocManager-1.30.10, BiocNeighbors-1.8.2, BiocParallel-1.24.1, BiocSingular-1.6.0, BiocStyle-2.18.1, BiocVersion-3.12.0, biomaRt-2.46.3, biomformat-1.18.0, Biostrings-2.58.0, biovizBase-1.38.0, blme-1.0-5, bluster-1.0.0, bookdown-0.21, BSgenome-1.58.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.3, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.32.0, CAMERA-1.46.0, Category-2.56.0, ccdata-1.16.0, ccmap-1.16.0, CGHbase-1.50.0, ChIPpeakAnno-3.24.1, CNEr-1.26.0, coloc-3.2-1, colorRamps-2.3, ComplexHeatmap-2.6.2, ConsensusClusterPlus-1.54.0, conumee-1.24.0, crossmeta-1.16.1, cummeRbund-2.32.0, cytolib-2.2.1, CytoML-2.2.1, dada2-1.18.0, DeconRNASeq-1.32.0, DEGseq-1.44.0, DelayedArray-0.16.1, DelayedMatrixStats-1.12.3, derfinder-1.24.2, derfinderHelper-1.24.1, DESeq2-1.30.0, diffcyt-1.10.0, DirichletMultinomial-1.32.0, DNAcopy-1.64.0, dqrng-0.2.1, DRIMSeq-1.18.0, DropletUtils-1.10.3, dupRadar-1.20.0, DynDoc-1.68.0, EBImage-4.32.0, edgeR-3.32.1, egg-0.4.5, emmeans-1.5.4, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.14.0, estimability-1.3, ExperimentHub-1.16.0, extraDistr-1.9.1, fda-5.1.9, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.16.0, flowClust-3.28.0, flowCore-2.2.0, FlowSOM-1.22.0, FlowSorted.Blood.EPIC-1.8.0, FlowSorted.CordBloodCombined.450k-1.6.0, flowStats-4.2.0, flowViz-1.54.0, flowWorkspace-4.2.0, FRASER-1.2.1, gcrma-2.62.0, gdsfmt-1.26.1, GenABEL-1.8-0, GenABEL.data-1.0.0, genefilter-1.72.1, geneLenDataBase-1.26.0, geneplotter-1.68.0, GENESIS-2.20.1, GENIE3-1.12.0, GenomeInfoDb-1.26.2, GenomeInfoDbData-1.2.4, GenomicAlignments-1.26.0, GenomicFeatures-1.42.1, GenomicFiles-1.26.0, GenomicRanges-1.42.0, GenomicScores-2.2.0, genoset-1.45.1, GEOquery-2.58.0, ggbio-1.38.0, ggcyto-1.18.0, ggdendro-0.1.22, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.54.0, Glimma-2.0.0, GlobalAncova-4.8.0, globaltest-5.44.0, GO.db-3.12.1, goseq-1.42.0, GOstats-2.56.0, graph-1.68.0, GSEABase-1.52.1, gsmoothr-0.1.7, GSVA-1.38.2, Gviz-1.34.0, GWASExactHW-1.01, GWASTools-1.36.0, HDF5Array-1.18.1, hdrcde-3.4, heatmaply-1.2.1, hgu133plus2.db-3.2.3, HMMcopy-1.32.0, Homo.sapiens-1.3.1, IHW-1.18.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.32.0, impute-1.64.0, interactiveDisplayBase-1.28.0, IRanges-2.24.1, isva-1.9, KEGG.db-3.2.4, KEGGgraph-1.50.0, KEGGprofile-1.32.0, KEGGREST-1.30.1, LEA-3.2.0, limma-3.46.0, lpsymphony-1.18.0, lsa-0.73.2, lumi-2.42.0, marray-1.68.0, maSigPro-1.62.0, MassSpecWavelet-1.56.0, mathjaxr-1.2-0, MatrixGenerics-1.2.0, MEDIPS-1.42.0, metagenomeSeq-1.32.0, metaMA-3.1.2, metap-1.4, MethylSeekR-1.30.0, methylumi-2.36.0, Mfuzz-2.50.0, minfi-1.36.0, missMethyl-1.24.0, mixOmics-6.14.0, MLInterfaces-1.70.0, MotifDb-1.32.0, motifmatchr-1.12.0, motifStack-1.34.0, MsCoreUtils-1.2.0, MSnbase-2.16.1, MultiDataSet-1.18.1, multtest-2.46.0, muscat-1.4.0, mutoss-0.1-12, mzID-1.28.0, mzR-2.24.1, NADA-1.6-1.1, ncdf4-1.17, ncdfFlow-2.36.0, NOISeq-2.34.0, oligo-1.54.1, oligoClasses-1.52.0, ontologyIndex-2.7, openCyto-2.2.0, org.Hs.eg.db-3.12.0, org.Mm.eg.db-3.12.0, org.Rn.eg.db-3.12.0, OrganismDbi-1.32.0, OUTRIDER-1.8.0, pcaMethods-1.82.0, perm-1.0-0.0, PFAM.db-3.12.0, phyloseq-1.34.0, pmp-1.2.0, polyester-1.26.0, poweRlaw-0.70.6, preprocessCore-1.52.1, pRoloc-1.30.0, pRolocdata-1.28.0, pRolocGUI-2.0.0, ProtGenerics-1.22.0, PRROC-1.3.1, PSCBS-0.65.0, PureCN-1.20.0, qap-0.1-1, quantsmooth-1.56.0, qvalue-2.22.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.66.0, RcppAnnoy-0.0.18, RcppHNSW-0.3.0, RcppZiggurat-0.1.6, regioneR-1.22.0, Repitools-1.36.0, ReportingTools-2.30.0, ResidualMatrix-1.0.0, Rfast-2.0.1, rGADEM-2.38.0, Rgraphviz-2.34.0, rhdf5-2.34.0, rhdf5filters-1.2.0, Rhdf5lib-1.12.1, Rhtslib-1.22.0, Ringo-1.54.0, RNASeqPower-1.30.0, ROC-1.66.0, ropls-1.22.0, RProtoBufLib-2.2.0, Rsamtools-2.6.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.4.2, rsvd-1.0.3, rtracklayer-1.50.0, S4Vectors-0.28.1, samr-3.0, SC3-1.18.0, SCANVIS-1.4.0, scater-1.18.3, scattermore-0.7, scran-1.18.5, scrime-1.3.5, sctransform-0.3.2, scuttle-1.0.4, SeqArray-1.30.0, seqLogo-1.56.0, SeqVarTools-1.28.1, seriation-1.2-9, Seurat-4.0.0, SeuratObject-4.0.0, shinyBS-0.61, shinydashboardPlus-0.7.5, shinyFiles-0.9.0, shinyhelper-0.3.2, shinypanel-0.1.4, shinyWidgets-0.5.7, ShortRead-1.48.0, siggenes-1.64.0, Signac-1.1.1, SingleCellExperiment-1.12.0, SingleR-1.4.1, sitmo-2.0.1, SMVar-1.3.3, SNPRelate-1.24.0, snpStats-1.40.0, sparseMatrixStats-1.2.1, SPIA-2.42.0, SSPA-2.30.0, stageR-1.12.0, struct-1.2.0, structToolbox-1.2.0, SummarizedExperiment-1.20.0, sva-3.38.0, TFBSTools-1.28.0, TFMPvalue-0.0.8, tkWidgets-1.68.0, truncnorm-1.0-8, TSP-1.1-10, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.18.0, uwot-0.1.10, variancePartition-1.20.0, VariantAnnotation-1.36.0, venn-1.9, vsn-3.58.0, wateRmelon-1.34.0, widgetTools-1.68.0, Wrench-1.8.0, xcms-3.12.0, xgboost-1.3.2.1, XVector-0.30.0, zCompositions-1.3.4, zlibbioc-1.36.0 + +### R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0 + +This is a list of extensions included in the module: + +admisc-0.8, affxparser-1.60.0, affy-1.66.0, affycoretools-1.60.0, affyio-1.58.0, AgiMicroRna-2.38.0, ALDEx2-1.20.0, ALL-1.30.0, annaffy-1.60.0, annotate-1.66.0, AnnotationDbi-1.50.0, AnnotationFilter-1.12.0, AnnotationForge-1.30.1, AnnotationHub-2.20.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.1, aroma.light-3.18.0, ATACseqQC-1.12.0, ballgown-2.20.0, batchelor-1.4.0, baySeq-2.22.0, beachmat-2.4.0, Biobase-2.48.0, BiocFileCache-1.12.0, BiocGenerics-0.34.0, BiocManager-1.30.10, BiocNeighbors-1.6.0, BiocParallel-1.22.0, BiocSingular-1.4.0, BiocVersion-3.11.1, biomaRt-2.44.0, biomformat-1.16.0, Biostrings-2.56.0, biovizBase-1.36.0, blme-1.0-4, BSgenome-1.56.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.3, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.30.0, CAMERA-1.44.0, Category-2.54.0, ccdata-1.14.0, ccmap-1.14.0, CGHbase-1.48.0, ChIPpeakAnno-3.22.0, coloc-3.2-1, colorRamps-2.3, ComplexHeatmap-2.4.2, ConsensusClusterPlus-1.52.0, conumee-1.22.0, crossmeta-1.14.0, cummeRbund-2.30.0, cytolib-2.0.0, CytoML-2.0.0, dada2-1.16.0, DeconRNASeq-1.30.0, DEGseq-1.42.0, DelayedArray-0.14.0, DelayedMatrixStats-1.10.0, derfinder-1.22.0, derfinderHelper-1.22.0, DESeq2-1.28.0, diffcyt-1.8.0, DNAcopy-1.62.0, dqrng-0.2.1, DRIMSeq-1.16.0, DropletUtils-1.8.0, dupRadar-1.18.0, DynDoc-1.66.0, EBImage-4.30.0, edgeR-3.30.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.12.0, ExperimentHub-1.14.0, fda-5.1.4, FDb.InfiniumMethylation.hg19-2.2.0, fgsea-1.14.0, flowClust-3.26.0, flowCore-2.0.0, FlowSOM-1.20.0, FlowSorted.Blood.EPIC-1.6.1, FlowSorted.CordBloodCombined.450k-1.4.1, flowStats-4.0.0, flowViz-1.52.0, flowWorkspace-4.0.0, gcrma-2.60.0, gdsfmt-1.24.0, genefilter-1.70.0, geneLenDataBase-1.24.0, geneplotter-1.66.0, GENESIS-2.18.0, GENIE3-1.10.0, GenomeInfoDb-1.24.0, GenomeInfoDbData-1.2.3, GenomicAlignments-1.24.0, GenomicFeatures-1.40.0, GenomicFiles-1.24.0, GenomicRanges-1.40.0, GenomicScores-2.0.0, genoset-1.44.0, GEOquery-2.56.0, ggbio-1.36.0, ggcyto-1.16.0, GLAD-2.52.0, Glimma-1.16.0, GlobalAncova-4.6.0, globaltest-5.42.0, GO.db-3.11.4, goseq-1.40.0, GOstats-2.54.0, graph-1.66.0, GSEABase-1.50.0, gsmoothr-0.1.7, GSVA-1.36.0, Gviz-1.32.0, GWASExactHW-1.01, GWASTools-1.34.0, HDF5Array-1.16.0, hgu133plus2.db-3.2.3, HMMcopy-1.30.0, Homo.sapiens-1.3.1, IHW-1.16.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.30.0, impute-1.62.0, interactiveDisplayBase-1.26.0, IRanges-2.22.1, isoband-0.2.1, isva-1.9, KEGG.db-3.2.4, KEGGgraph-1.48.0, KEGGprofile-1.30.0, KEGGREST-1.28.0, LEA-3.0.0, limma-3.44.1, lpsymphony-1.16.0, lsa-0.73.2, lumi-2.40.0, MALDIquant-1.19.3, marray-1.66.0, maSigPro-1.60.0, MassSpecWavelet-1.54.0, MEDIPS-1.40.0, metagenomeSeq-1.30.0, metaMA-3.1.2, metap-1.3, MethylSeekR-1.28.0, methylumi-2.34.0, Mfuzz-2.48.0, minfi-1.34.0, missMethyl-1.22.0, mixOmics-6.12.0, MLInterfaces-1.68.0, MotifDb-1.30.0, motifStack-1.32.0, MotIV-1.43.0, MSnbase-2.14.0, multtest-2.44.0, muscat-1.2.0, mutoss-0.1-12, mzID-1.26.0, mzR-2.22.0, NADA-1.6-1.1, ncdfFlow-2.34.0, NOISeq-2.31.0, oligo-1.52.1, oligoClasses-1.50.0, openCyto-2.0.0, org.Hs.eg.db-3.11.4, org.Mm.eg.db-3.11.4, org.Rn.eg.db-3.11.4, OrganismDbi-1.30.0, pcaMethods-1.80.0, perm-1.0-0.0, PFAM.db-3.11.4, phyloseq-1.32.0, polyester-1.24.0, preprocessCore-1.50.0, pRoloc-1.28.0, pRolocdata-1.26.0, pRolocGUI-1.22.0, ProtGenerics-1.20.0, PSCBS-0.65.0, PureCN-1.18.0, quantsmooth-1.54.0, qvalue-2.20.0, R.devices-2.16.1, R.filesets-2.13.0, R.huge-0.9.0, R.utils-2.9.2, rappdirs-0.3.1, rARPACK-0.11-0, RBGL-1.64.0, RcppAnnoy-0.0.16, RcppHNSW-0.2.0, RcppParallel-5.0.1, RcppZiggurat-0.1.5, readr-1.3.1, regioneR-1.20.0, Repitools-1.34.0, ReportingTools-2.28.0, Rfast-1.9.9, rGADEM-2.36.0, Rgraphviz-2.32.0, rhdf5-2.32.0, Rhdf5lib-1.10.0, Rhtslib-1.20.0, Ringo-1.52.0, RNASeqPower-1.28.0, ROC-1.64.0, RProtoBufLib-2.0.0, RProtoBufLib-2.0.0, Rsamtools-2.4.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.2.1, rsvd-1.0.3, rtracklayer-1.48.0, S4Vectors-0.26.0, samr-3.0, SC3-1.16.0, SCANVIS-1.2.0, scater-1.16.0, scran-1.16.0, scrime-1.3.5, SeqArray-1.28.0, seqLogo-1.54.1, SeqVarTools-1.26.0, Seurat-3.1.5, shinyFiles-0.8.0, ShortRead-1.46.0, sigaR-1.35.0, siggenes-1.62.0, SingleCellExperiment-1.10.1, SingleR-1.2.4, sitmo-2.0.1, SMVar-1.3.3, SNPRelate-1.22.0, snpStats-1.38.0, SPIA-2.40.0, SSPA-2.28.0, stageR-1.10.0, SummarizedExperiment-1.18.1, sva-3.36.0, sva-3.36.0, tkWidgets-1.66.0, truncnorm-1.0-8, truncnorm-1.0-8, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.16.0, uwot-0.1.8, variancePartition-1.18.0, VariantAnnotation-1.34.0, venn-1.9, vsn-3.56.0, wateRmelon-1.32.0, widgetTools-1.66.0, Wrench-1.6.0, xcms-3.10.0, xgboost-1.2.0.1, XVector-0.28.0, zCompositions-1.3.4, zlibbioc-1.34.0 + +### R-bundle-Bioconductor/3.10-foss-2019b + +This is a list of extensions included in the module: + +admisc-0.5, affy-1.64.0, affycoretools-1.58.4, affyio-1.56.0, AgiMicroRna-2.36.0, ALDEx2-1.18.0, ALL-1.28.0, annaffy-1.58.0, annotate-1.64.0, AnnotationDbi-1.48.0, AnnotationFilter-1.10.0, AnnotationForge-1.28.0, AnnotationHub-2.18.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.1, aroma.light-3.16.0, askpass-1.1, ATACseqQC-1.10.2, ballgown-2.18.0, batchelor-1.2.4, baySeq-2.20.0, beachmat-2.2.1, Biobase-2.46.0, BiocFileCache-1.10.2, BiocGenerics-0.32.0, BiocManager-1.30.10, BiocNeighbors-1.4.1, BiocParallel-1.20.1, BiocSingular-1.2.2, BiocVersion-3.10.1, biomaRt-2.42.0, biomformat-1.14.0, Biostrings-2.54.0, biovizBase-1.34.1, BSgenome-1.54.0, BSgenome.Hsapiens.UCSC.hg19-1.4.0, BSgenome.Hsapiens.UCSC.hg38-1.4.1, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.28.0, CAMERA-1.42.0, Category-2.52.1, CGHbase-1.46.0, ChIPpeakAnno-3.20.1, clue-0.3-57, ComplexHeatmap-2.2.0, ConsensusClusterPlus-1.50.0, cummeRbund-2.28.0, cytolib-1.8.0, CytoML-1.12.1, dada2-1.14.1, DeconRNASeq-1.28.0, DEGseq-1.40.0, DelayedArray-0.12.2, DelayedMatrixStats-1.8.0, derfinder-1.20.0, derfinderHelper-1.20.0, DESeq2-1.26.0, diffcyt-1.6.6, DNAcopy-1.60.0, dqrng-0.2.1, DRIMSeq-1.14.0, DropletUtils-1.6.1, dupRadar-1.16.0, DynDoc-1.64.0, EBImage-4.28.1, edgeR-3.28.0, ensembldb-2.10.2, fda-5.1.4, FDb.InfiniumMethylation.hg19-2.2.0, fgsea-1.12.0, flowClust-3.24.0, flowCore-1.52.1, FlowSOM-1.18.0, flowStats-3.44.0, flowViz-1.50.0, flowWorkspace-3.34.1, fs-1.3.1, gcrma-2.58.0, gdsfmt-1.22.0, genefilter-1.68.0, geneLenDataBase-1.22.0, geneplotter-1.64.0, GENESIS-2.16.1, GENIE3-1.8.0, GenomeGraphs-1.46.0, GenomeInfoDb-1.22.0, GenomeInfoDbData-1.2.2, GenomicAlignments-1.22.1, GenomicFeatures-1.38.2, GenomicFiles-1.22.0, GenomicRanges-1.38.0, GenomicScores-1.10.0, genoset-1.42.0, GEOquery-2.54.1, ggbio-1.34.0, ggcyto-1.14.1, ggplot2-3.3.0, Glimma-1.14.0, GlobalAncova-4.4.0, globaltest-5.40.0, GO.db-3.10.0, goseq-1.38.0, GOstats-2.52.0, graph-1.64.0, GSEABase-1.48.0, gsmoothr-0.1.7, GSVA-1.34.0, Gviz-1.30.3, GWASExactHW-1.01, GWASTools-1.32.0, HDF5Array-1.14.2, hgu133plus2.db-3.2.3, HMMcopy-1.28.1, Homo.sapiens-1.3.1, IHW-1.14.0, illuminaio-0.28.0, impute-1.60.0, interactiveDisplayBase-1.24.0, IRanges-2.20.2, isoband-0.2.1, KEGG.db-3.2.3, KEGGgraph-1.46.0, KEGGprofile-1.28.0, KEGGREST-1.26.1, LEA-2.8.0, limma-3.42.2, lpsymphony-1.14.0, lumi-2.38.0, MALDIquant-1.19.3, marray-1.64.0, maSigPro-1.58.0, MassSpecWavelet-1.52.0, MEDIPS-1.38.0, metagenomeSeq-1.28.2, metap-1.3, methylumi-2.32.0, Mfuzz-2.46.0, minfi-1.32.0, mixOmics-6.10.8, MLInterfaces-1.66.2, MotifDb-1.28.0, motifStack-1.30.0, MotIV-1.42.0, MSnbase-2.12.0, multtest-2.42.0, mutoss-0.1-12, mzID-1.24.0, mzR-2.20.0, ncdfFlow-2.32.0, NOISeq-2.30.0, oligoClasses-1.48.0, openCyto-1.24.0, org.Hs.eg.db-3.10.0, OrganismDbi-1.28.0, pcaMethods-1.78.0, perm-1.0-0.0, PFAM.db-3.10.0, phyloseq-1.30.0, polyester-1.22.0, preprocessCore-1.48.0, pRoloc-1.26.0, pRolocdata-1.24.0, pRolocGUI-1.20.0, ProtGenerics-1.18.0, PSCBS-0.65.0, PureCN-1.16.0, quantsmooth-1.52.0, qvalue-2.18.0, R.devices-2.16.1, R.filesets-2.13.0, R.huge-0.9.0, R.utils-2.9.2, rappdirs-0.3.1, rARPACK-0.11-0, RBGL-1.62.1, RcppAnnoy-0.0.14, RcppHNSW-0.2.0, RcppParallel-4.4.4, readr-1.3.1, regioneR-1.18.1, Repitools-1.32.0, ReportingTools-2.26.0, rGADEM-2.34.1, Rgraphviz-2.30.0, rhdf5-2.30.1, Rhdf5lib-1.8.0, Rhtslib-1.18.1, Ringo-1.50.0, RNASeqPower-1.26.0, RProtoBufLib-1.8.0, Rsamtools-2.2.3, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.0.1, rsvd-1.0.3, rtracklayer-1.46.0, S4Vectors-0.24.3, samr-3.0, SC3-1.14.0, scater-1.14.6, scran-1.14.6, scrime-1.3.5, SeqArray-1.26.2, seqLogo-1.52.0, SeqVarTools-1.24.0, Seurat-3.1.5, shinyFiles-0.7.5, ShortRead-1.44.3, sigaR-1.34.0, siggenes-1.60.0, SingleCellExperiment-1.8.0, sitmo-2.0.1, SNPRelate-1.20.1, SPIA-2.38.0, SSPA-2.26.0, stageR-1.8.0, SummarizedExperiment-1.16.1, sva-3.34.0, sys-3.3, tkWidgets-1.64.0, truncnorm-1.0-8, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.14.0, uwot-0.1.8, VariantAnnotation-1.32.0, venn-1.9, vsn-3.54.0, widgetTools-1.64.0, Wrench-1.4.0, xcms-3.8.1, XVector-0.26.0, zlibbioc-1.32.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-CRAN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-CRAN.md index 750e2031a31d..0ba074be4a27 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-CRAN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-CRAN.md @@ -6,6 +6,10 @@ hide: R-bundle-CRAN ============= + +Bundle of R packages from CRAN + +https://www.r-project.org/ # Available modules @@ -17,8 +21,15 @@ To start using R-bundle-CRAN, load one of these modules using a `module load` co module load R-bundle-CRAN/2023.12-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |R-bundle-CRAN/2023.12-foss-2023a|x|x|x|x|x|x| + + +### R-bundle-CRAN/2023.12-foss-2023a + +This is a list of extensions included in the module: + +abc-2.2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.2, adabag-5.0, ade4-1.7-22, ADGofTest-0.3, admisc-0.34, aggregation-1.0.1, AICcmodavg-2.3-3, akima-0.6-3.4, alabama-2023.1.0, AlgDesign-1.2.1, alluvial-0.1-2, AMAPVox-1.0.1, animation-2.7, aod-1.3.2, apcluster-1.4.11, ape-5.7-1, aplot-0.2.2, argparse-2.2.2, aricode-1.0.3, arm-1.13-1, arrayhelpers-1.1-0, asnipe-1.1.17, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-4, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-11, aws-2.5-3, awsMethods-1.1-1, backports-1.4.1, bacr-1.0.1, bartMachine-1.3.4.1, bartMachineJARs-1.2.1, base64-2.0.1, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.8, BayesLogit-2.1, bayesm-3.1-6, BayesPen-1.0, bayesplot-1.10.0, BB-2019.10-1, BBmisc-1.13, bbmle-1.0.25.1, BCEE-1.3.2, BDgraph-2.72, bdsmatrix-1.3-6, beanplot-1.3.1, beeswarm-0.4.0, berryFunctions-1.22.0, betareg-3.1-4, BH-1.81.0-1, BiasedUrn-2.0.11, bibtex-0.5.1, BIEN-1.2.6, bigD-0.2.0, BIGL-1.8.0, bigmemory-4.6.1, bigmemory.sri-0.1.6, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-4, biom-0.3.12, biomod2-4.2-4, bit-4.0.5, bit64-4.0.5, bitops-1.0-7, blavaan-0.5-2, blob-1.2.4, BMA-3.18.17, bmp-0.3, bnlearn-4.9.1, bold-1.3.0, boot-1.3-28.1, bootstrap-2019.6, Boruta-8.0.0, brglm-0.7.2, bridgedist-0.1.2, bridgesampling-1.1-2, brms-2.20.4, Brobdingnag-1.2-9, broom-1.0.5, broom.helpers-1.14.0, broom.mixed-0.2.9.4, bst-0.3-24, Cairo-1.6-2, calibrate-1.7.7, car-3.1-2, carData-3.0-5, caret-6.0-94, catlearn-1.0, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, changepoint-2.2.4, checkmate-2.3.1, chemometrics-1.4.4, chk-0.9.1, chkptstanr-0.1.1, chron-2.3-61, circlize-0.4.15, circular-0.5-0, class-7.3-22, classInt-0.4-10, cld2-1.2.4, clisymbols-1.2.0, clock-0.7.0, clue-0.3-65, cluster-2.1.6, clusterGeneration-1.3.8, clusterRepro-0.9, clustree-0.5.1, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.4, cobalt-4.5.2, cobs-1.3-5, coda-0.19-4, codetools-0.2-19, coin-1.4-3, collapse-2.0.7, colorspace-2.1-0, colourpicker-1.3.0, combinat-0.0-8, ComICS-1.0.4, ComplexUpset-1.3.3, compositions-2.0-6, CompQuadForm-1.4.3, conditionz-0.1.0, conflicted-1.2.0, conquer-1.3.3, ConsRank-2.1.3, contfrac-1.1-12, copCAR-2.0-4, copula-1.1-3, corpcor-1.6.10, corrplot-0.92, covr-3.6.4, CovSel-1.2.1, covsim-1.0.0, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-18.1, crfsuite-0.4.2, crosstalk-1.2.1, crul-1.4.0, cSEM-0.5.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.1.0, cubelyr-1.0.2, cvAUC-1.1.4, CVST-0.2-3, CVXR-1.0-11, d3Network-0.5.2.1, dagitty-0.3-4, data.table-1.14.10, data.tree-1.1.0, DataCombine-0.2.21, date-1.2-42, dbarts-0.9-25, DBI-1.1.3, dbplyr-2.4.0, dbscan-1.1-12, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-42, debugme-1.1.0, deldir-2.0-2, dendextend-1.17.1, DEoptim-2.2-8, DEoptimR-1.1-3, DepthProc-2.1.5, Deriv-4.1.3, DescTools-0.99.52, 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Rmpfr-0.9-4, rms-6.7-1, RMTstat-0.3.1, rncl-0.8.7, rnetcarto-0.2.6, RNeXML-2.4.11, rngtools-1.5.2, rngWELL-0.10-9, RNifti-1.5.1, robustbase-0.99-1, ROCR-1.0-11, ROI-1.0-1, ROI.plugin.glpk-1.0-0, Rook-1.2, rootSolve-1.8.2.4, roptim-0.1.6, rotl-3.1.0, rpact-3.4.0, rpart-4.1.23, rpf-1.0.14, RPMM-1.25, RPostgreSQL-0.7-5, rrcov-1.7-4, rredlist-0.7.1, rsample-1.2.0, rsconnect-1.1.1, Rserve-1.8-13, RSNNS-0.4-17, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.3.4, Rssa-1.0.5, rstan-2.32.3, rstantools-2.3.1.1, rstatix-0.7.2, rtdists-0.11-5, Rtsne-0.17, Rttf2pt1-1.3.12, RUnit-0.4.32, ruv-0.9.7.1, rvertnet-0.8.2, rvest-1.0.3, rvinecopulib-0.6.3.1.1, Rvmmin-2018-4.17.1, RWeka-0.4-46, RWekajars-3.9.3-2, s2-1.1.4, sampling-2.10, sandwich-3.0-2, SBdecomp-1.2, scales-1.3.0, scam-1.2-14, scatterpie-0.2.1, scatterplot3d-0.3-44, scs-3.2.4, sctransform-0.4.1, SDMTools-1.1-221.2, seewave-2.2.3, segmented-2.0-0, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-6, sendmailR-1.4-0, sensemakr-0.1.4, sentometrics-1.0.0, seqinr-4.2-36, servr-0.27, setRNG-2022.4-1, sf-1.0-14, sfheaders-0.4.3, sfsmisc-1.1-16, shadowtext-0.1.2, shape-1.4.6, shapefiles-0.7.2, shinycssloaders-1.0.0, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-1.8-0, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.5, slam-0.1-50, slider-0.3.1, sm-2.2-5.7.1, smoof-1.6.0.3, smoother-1.1, sn-2.1.1, sna-2.7-2, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.1, snowfall-1.84-6.3, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sp-2.1-2, spaa-0.2.2, spam-2.10-0, spaMM-4.4.0, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-17, spatstat-3.0-7, spatstat.core-2.4-4, spatstat.data-3.0-3, spatstat.explore-3.2-5, spatstat.geom-3.2-7, spatstat.linnet-3.1-3, spatstat.model-3.2-8, spatstat.random-3.2-2, spatstat.sparse-3.0-3, spatstat.utils-3.0-4, spData-2.3.0, spdep-1.3-1, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.2, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.26.28, stargazer-5.2.3, stars-0.6-4, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.5.0, statnet-2019.6, statnet.common-4.9.0, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.12, strucchange-1.5-3, styler-1.10.2, subplex-1.8, SuperLearner-2.0-28.1, SuppDists-1.1-9.7, survey-4.2-1, survival-3.5-7, survivalROC-1.0.3.1, svd-0.5.5, svglite-2.1.3, svUnit-1.0.6, swagger-3.33.1, symmoments-1.2.1, tableone-0.13.2, tabletools-0.1.0, tau-0.0-25, taxize-0.9.100, tcltk2-1.2-11, tclust-1.5-5, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.2.0, terra-1.7-55, testit-0.13, textcat-1.0-8, textplot-0.2.2, TFisher-0.2.0, TH.data-1.1-2, threejs-0.3.3, tictoc-1.2, tidybayes-3.0.6, tidygraph-1.2.3, tidyr-1.3.0, tidyselect-1.2.0, tidytext-0.4.1, tidytree-0.4.5, tidyverse-2.0.0, tiff-0.1-12, timechange-0.2.0, timeDate-4022.108, timereg-2.0.5, tkrplot-0.0-27, tm-0.7-11, tmap-3.3-4, tmaptools-3.1-1, TMB-1.9.9, tmle-2.0.0, tmvnsim-1.0-2, tmvtnorm-1.6, tokenizers-0.3.0, topicmodels-0.2-15, TraMineR-2.2-8, tree-1.0-43, triebeard-0.4.1, trimcluster-0.1-5, tripack-1.3-9.1, TruncatedNormal-2.2.2, truncnorm-1.0-9, trust-0.1-8, tseries-0.10-55, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.4, tuneR-1.4.6, twang-2.6, tweedie-2.3.5, tweenr-2.0.2, tzdb-0.4.0, ucminf-1.2.0, udpipe-0.8.11, umap-0.2.10.0, unbalanced-2.0, unikn-0.9.0, uniqueAtomMat-0.1-3-2, units-0.8-5, unmarked-1.3.2, UpSetR-1.4.0, urca-1.3-3, urltools-1.7.3, uroot-2.1-2, uuid-1.1-1, V8-4.4.1, varhandle-2.0.6, vcd-1.4-11, vcfR-1.15.0, vegan-2.6-4, VennDiagram-1.7.3, VGAM-1.1-9, VIM-6.2.2, VineCopula-2.5.0, vioplot-0.4.0, vipor-0.4.5, viridis-0.6.4, viridisLite-0.4.2, visdat-0.6.0, visNetwork-2.1.2, vroom-1.6.5, VSURF-1.2.0, warp-0.2.1, waveslim-1.8.4, wdm-0.2.4, webshot-0.5.5, webutils-1.2.0, weights-1.0.4, WeightSVM-1.7-13, wellknown-0.7.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, wk-0.9.1, word2vec-0.4.0, wordcloud-2.6, worrms-0.4.3, writexl-1.4.2, WriteXLS-6.4.0, xgboost-1.7.6.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.16, xts-0.13.1, yaImpute-1.0-33, yulab.utils-0.1.0, zeallot-0.1.0, zoo-1.8-12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/R.md b/mkdocs/docs/HPC/only/gent/available_software/detail/R.md index d56dbc19fb11..307621242676 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/R.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/R.md @@ -6,6 +6,10 @@ hide: R = + +R is a free software environment for statistical computing and graphics. + +https://www.r-project.org/ # Available modules @@ -17,7 +21,7 @@ To start using R, load one of these modules using a `module load` command like: module load R/4.3.2-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -36,3 +40,94 @@ module load R/4.3.2-gfbf-2023a |R/4.0.0-foss-2020a|-|x|x|-|x|x| |R/3.6.3-foss-2020a|-|-|x|-|x|x| |R/3.6.2-foss-2019b|-|x|x|-|x|x| + + +### R/4.3.2-gfbf-2023a + +This is a list of extensions included in the module: + +askpass-1.2.0, base, base64enc-0.1-3, brew-1.0-8, brio-1.1.3, bslib-0.5.1, cachem-1.0.8, callr-3.7.3, cli-3.6.1, clipr-0.8.0, commonmark-1.9.0, compiler, cpp11-0.4.6, crayon-1.5.2, credentials-2.0.1, curl-5.1.0, datasets, desc-1.4.2, devtools-2.4.5, diffobj-0.3.5, digest-0.6.33, downlit-0.4.3, ellipsis-0.3.2, evaluate-0.23, fansi-1.0.5, fastmap-1.1.1, fontawesome-0.5.2, fs-1.6.3, gert-2.0.0, gh-1.4.0, gitcreds-0.1.2, glue-1.6.2, graphics, grDevices, grid, highr-0.10, htmltools-0.5.7, htmlwidgets-1.6.2, httpuv-1.6.12, httr-1.4.7, httr2-0.2.3, ini-0.3.1, jquerylib-0.1.4, jsonlite-1.8.7, knitr-1.45, later-1.3.1, lifecycle-1.0.3, magrittr-2.0.3, memoise-2.0.1, methods, mime-0.12, miniUI-0.1.1.1, openssl-2.1.1, parallel, pillar-1.9.0, pkgbuild-1.4.2, pkgconfig-2.0.3, pkgdown-2.0.7, pkgload-1.3.3, praise-1.0.0, prettyunits-1.2.0, processx-3.8.2, profvis-0.3.8, promises-1.2.1, ps-1.7.5, purrr-1.0.2, R6-2.5.1, ragg-1.2.6, rappdirs-0.3.3, rcmdcheck-1.4.0, Rcpp-1.0.11, rematch2-2.1.2, remotes-2.4.2.1, rlang-1.1.2, rmarkdown-2.25, roxygen2-7.2.3, rprojroot-2.0.4, rstudioapi-0.15.0, rversions-2.1.2, sass-0.4.7, sessioninfo-1.2.2, shiny-1.7.5.1, sourcetools-0.1.7-1, splines, stats, stats4, stringi-1.7.12, stringr-1.5.0, sys-3.4.2, systemfonts-1.0.5, tcltk, testthat-3.2.0, textshaping-0.3.7, tibble-3.2.1, tinytex-0.48, tools, urlchecker-1.0.1, usethis-2.2.2, utf8-1.2.4, utils, vctrs-0.6.4, waldo-0.5.2, whisker-0.4.1, withr-2.5.2, xfun-0.41, xml2-1.3.5, xopen-1.0.0, xtable-1.8-4, yaml-2.3.7, zip-2.3.0 + +### R/4.2.2-foss-2022b + +This is a list of extensions included in the module: + +abc-2.2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-22, ADGofTest-0.3, admisc-0.31, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-3.4, alabama-2022.4-1, AlgDesign-1.2.1, alluvial-0.1-2, AMAPVox-1.0.0, animation-2.7, aod-1.3.2, apcluster-1.4.10, ape-5.7-1, aplot-0.1.10, argparse-2.2.2, aricode-1.0.2, arm-1.13-1, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-10, aws-2.5-1, awsMethods-1.1-1, backports-1.4.1, bacr-1.0.1, bartMachine-1.3.3.1, bartMachineJARs-1.2.1, base, base64-2.0.1, base64enc-0.1-3, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.8, BayesLogit-2.1, bayesm-3.1-5, BayesPen-1.0, bayesplot-1.10.0, BB-2019.10-1, BBmisc-1.13, bbmle-1.0.25, BCEE-1.3.1, BDgraph-2.72, bdsmatrix-1.3-6, beanplot-1.3.1, beeswarm-0.4.0, berryFunctions-1.22.0, betareg-3.1-4, BH-1.81.0-1, BiasedUrn-2.0.9, bibtex-0.5.1, bigD-0.2.0, BIGL-1.7.0, bigmemory-4.6.1, bigmemory.sri-0.1.6, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-4, biom-0.3.12, biomod2-4.2-2, bit-4.0.5, bit64-4.0.5, bitops-1.0-7, blavaan-0.4-7, blob-1.2.4, BMA-3.18.17, bmp-0.3, bnlearn-4.8.1, bold-1.2.0, boot-1.3-28.1, bootstrap-2019.6, Boruta-8.0.0, brew-1.0-8, brglm-0.7.2, bridgedist-0.1.2, bridgesampling-1.1-2, brio-1.1.3, brms-2.19.0, Brobdingnag-1.2-9, broom-1.0.4, broom.helpers-1.12.0, broom.mixed-0.2.9.4, bslib-0.4.2, bst-0.3-24, cachem-1.0.7, Cairo-1.6-0, calibrate-1.7.7, callr-3.7.3, car-3.1-1, carData-3.0-5, caret-6.0-93, catlearn-0.9.1, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.2.10, cghFLasso-0.2-1, changepoint-2.2.4, checkmate-2.1.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-60, circlize-0.4.15, circular-0.4-95, class-7.3-21, classInt-0.4-9, cld2-1.2.4, cli-3.6.0, clipr-0.8.0, clisymbols-1.2.0, clock-0.6.1, clue-0.3-64, cluster-2.1.4, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.5.0, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.2, cobalt-4.4.1, cobs-1.3-5, coda-0.19-4, codetools-0.2-19, coin-1.4-2, collapse-1.9.3, colorspace-2.1-0, colourpicker-1.2.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.8.1, compiler, ComplexUpset-1.3.3, compositions-2.0-5, CompQuadForm-1.4.3, conditionz-0.1.0, conflicted-1.2.0, conquer-1.3.3, contfrac-1.1-12, copCAR-2.0-4, copula-1.1-2, corpcor-1.6.10, corrplot-0.92, covr-3.6.1, CovSel-1.2.1, covsim-1.0.0, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-18.1, cpp11-0.4.3, crayon-1.5.2, credentials-1.3.2, crfsuite-0.4.1, crosstalk-1.2.0, crul-1.3, cSEM-0.5.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.6, cubelyr-1.0.2, curl-5.0.0, cvAUC-1.1.4, CVST-0.2-3, CVXR-1.0-11, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.8, data.tree-1.0.0, DataCombine-0.2.21, datasets, date-1.2-42, dbarts-0.9-23, DBI-1.1.3, dbplyr-2.3.1, dbscan-1.1-11, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-42, debugme-1.1.0, deldir-1.0-6, dendextend-1.16.0, DEoptim-2.2-8, DEoptimR-1.0-11, DepthProc-2.1.5, Deriv-4.1.3, desc-1.4.2, DescTools-0.99.48, deSolve-1.35, devtools-2.4.5, dfidx-0.0-5, DHARMa-0.4.6, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.9, DiceKriging-1.6.0, dichromat-2.0-0.1, diffobj-0.3.5, digest-0.6.31, dimRed-0.2.6, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-9, distillery-1.2-1, distr-2.9.1, distrEx-2.9.0, distributional-0.3.1, DistributionUtils-0.6-0, diveRsity-1.9.90, dlm-1.1-6, DMCfun-2.0.2, doc2vec-0.2.0, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.6, doSNOW-1.0.20, dotCall64-1.0-2, downlit-0.4.2, downloader-0.4, dplyr-1.1.0, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.27, dtangle-2.0.9, dtplyr-1.3.0, DTRreg-1.7, dtw-1.23-1, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-13, earth-5.3.2, EasyABC-1.5.2, ECOSolveR-0.5.5, elementR-1.3.7, ellipse-0.4.3, ellipsis-0.3.2, 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stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.3, stars-0.6-0, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.5.0, statnet-2019.6, statnet.common-4.8.0, stats, stats4, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.10, stringi-1.7.12, stringr-1.5.0, strucchange-1.5-3, styler-1.9.1, subplex-1.8, SuperLearner-2.0-28, SuppDists-1.1-9.7, survey-4.1-1, survival-3.5-5, survivalROC-1.0.3.1, svd-0.5.3, svglite-2.1.1, swagger-3.33.1, symmoments-1.2.1, sys-3.4.1, systemfonts-1.0.4, tableone-0.13.2, tabletools-0.1.0, tau-0.0-24, taxize-0.9.100, tcltk, tcltk2-1.2-11, tclust-1.5-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.1.1, terra-1.7-18, testit-0.13, testthat-3.1.7, textcat-1.0-8, textplot-0.2.2, textshaping-0.3.6, TFisher-0.2.0, TH.data-1.1-1, threejs-0.3.3, tibble-3.2.0, tictoc-1.1, tidygraph-1.2.3, tidyr-1.3.0, tidyselect-1.2.0, tidytext-0.4.1, tidytree-0.4.2, tidyverse-2.0.0, tiff-0.1-11, timechange-0.2.0, timeDate-4022.108, timereg-2.0.5, tinytex-0.44, tkrplot-0.0-27, tm-0.7-11, tmap-3.3-3, tmaptools-3.1-1, TMB-1.9.2, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.5, tokenizers-0.3.0, tools, topicmodels-0.2-13, TraMineR-2.2-6, tree-1.0-43, triebeard-0.4.1, trimcluster-0.1-5, tripack-1.3-9.1, TruncatedNormal-2.2.2, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-53, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.3, tuneR-1.4.3, twang-2.5, tweedie-2.3.5, tweenr-2.0.2, tzdb-0.3.0, ucminf-1.1-4.1, udpipe-0.8.11, umap-0.2.10.0, unbalanced-2.0, unikn-0.8.0, uniqueAtomMat-0.1-3-2, units-0.8-1, unmarked-1.2.5, UpSetR-1.4.0, urca-1.3-3, urlchecker-1.0.1, urltools-1.7.3, uroot-2.1-2, usethis-2.1.6, utf8-1.2.3, utils, uuid-1.1-0, V8-4.2.2, varhandle-2.0.5, vcd-1.4-11, vcfR-1.14.0, vctrs-0.6.0, vegan-2.6-4, VennDiagram-1.7.3, VGAM-1.1-8, VIM-6.2.2, VineCopula-2.4.5, vioplot-0.4.0, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.1, visdat-0.6.0, visNetwork-2.1.2, vroom-1.6.1, VSURF-1.2.0, waldo-0.4.0, warp-0.2.0, waveslim-1.8.4, wdm-0.2.3, webshot-0.5.4, webutils-1.1, weights-1.0.4, WeightSVM-1.7-11, wellknown-0.7.4, whisker-0.4.1, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.5.0, wk-0.7.1, word2vec-0.3.4, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.4.0, xfun-0.37, xgboost-1.7.3.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.13, xml2-1.3.3, xopen-1.0.0, xtable-1.8-4, xts-0.13.0, yaImpute-1.0-33, yaml-2.3.7, yulab.utils-0.0.6, zeallot-0.1.0, zip-2.2.2, zoo-1.8-11 + +### R/4.2.1-foss-2022a + +This is a list of extensions included in the module: + +abc-2.2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-19, ADGofTest-0.3, admisc-0.29, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-3.4, alabama-2022.4-1, AlgDesign-1.2.1, alluvial-0.1-2, AMAPVox-0.12.0, animation-2.7, aod-1.3.2, apcluster-1.4.10, ape-5.6-2, aplot-0.1.9, argparse-2.1.5, aricode-1.0.2, arm-1.12-2, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-10, aws-2.5-1, awsMethods-1.1-1, backports-1.4.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base, base64-2.0, base64enc-0.1-3, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.7, BayesLogit-2.1, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.9.0, BB-2019.10-1, BBmisc-1.12, bbmle-1.0.25, BCEE-1.3.0, BDgraph-2.67, bdsmatrix-1.3-6, beanplot-1.3.1, beeswarm-0.4.0, berryFunctions-1.22.0, betareg-3.1-4, BH-1.78.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.6, bigmemory-4.6.1, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-3, biom-0.3.12, biomod2-3.5.1, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.4-3, blob-1.2.3, BMA-3.18.17, bmp-0.3, bnlearn-4.7.1, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-7, brglm-0.7.2, bridgedist-0.1.1, bridgesampling-1.1-2, brio-1.1.3, brms-2.17.0, Brobdingnag-1.2-7, broom-0.8.0, broom.helpers-1.7.0, broom.mixed-0.2.9.4, bslib-0.3.1, bst-0.3-23, cachem-1.0.6, Cairo-1.5-15, calibrate-1.7.7, callr-3.7.0, car-3.1-0, carData-3.0-5, caret-6.0-92, catlearn-0.9.1, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, changepoint-2.2.4, checkmate-2.1.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-57, circlize-0.4.15, circular-0.4-95, class-7.3-20, classInt-0.4-7, cld2-1.2.4, cli-3.3.0, clipr-0.8.0, clisymbols-1.2.0, clue-0.3-61, cluster-2.1.3, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.4, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.2, cobalt-4.3.2, cobs-1.3-5, coda-0.19-4, codetools-0.2-18, coin-1.4-2, collapse-1.8.6, colorspace-2.0-3, colourpicker-1.1.1, combinat-0.0-8, ComICS-1.0.4, commonmark-1.8.0, compiler, ComplexUpset-1.3.3, compositions-2.0-4, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.3.0, contfrac-1.1-12, copCAR-2.0-4, copula-1.1-0, corpcor-1.6.10, corrplot-0.92, covr-3.5.1, CovSel-1.2.1, covsim-1.0.0, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-17, cpp11-0.4.2, crayon-1.5.1, credentials-1.3.2, crfsuite-0.4.1, crosstalk-1.2.0, crul-1.2.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.4, cubelyr-1.0.1, curl-4.3.2, cvAUC-1.1.4, CVST-0.2-3, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.2, data.tree-1.0.0, DataCombine-0.2.21, datasets, date-1.2-39, dbarts-0.9-22, DBI-1.1.3, dbplyr-2.2.0, dbscan-1.1-11, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-39, debugme-1.1.0, deldir-1.0-6, dendextend-1.15.2, DEoptim-2.2-6, DEoptimR-1.0-11, DepthProc-2.1.5, Deriv-4.1.3, desc-1.4.1, DescTools-0.99.45, deSolve-1.32, devtools-2.4.3, dfidx-0.0-4, DHARMa-0.4.5, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.9, DiceKriging-1.6.0, dichromat-2.0-0.1, diffobj-0.3.5, digest-0.6.29, dimRed-0.2.5, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-5, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, distributional-0.3.0, DistributionUtils-0.6-0, diveRsity-1.9.90, dlm-1.1-6, DMCfun-2.0.2, doc2vec-0.2.0, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.2, doSNOW-1.0.20, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.9, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.23, dtangle-2.0.9, dtplyr-1.2.1, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-11, earth-5.3.1, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.3, ellipsis-0.3.2, elliptic-1.4-0, emdbook-1.3.12, emoa-0.5-0.1, emulator-1.2-21, energy-1.7-10, ENMeval-2.0.3, entropy-1.3.1, EnvStats-2.7.0, epitools-0.5-10.1, ergm-4.2.2, ergm.count-4.1.1, evaluate-0.15, EValue-4.1.3, evd-2.3-6, Exact-3.1, expm-0.999-6, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.18, extrafontdb-1.0, extRemes-2.1-2, FactoMineR-2.4, FactorCopula-0.8, fail-1.3, fansi-1.0.3, farver-2.1.0, fastcluster-1.2.3, fastDummies-1.6.3, fasterize-1.0.3, fastICA-1.2-3, fastmap-1.1.0, fastmatch-1.1-3, fdrtool-1.2.17, feather-0.3.5, ff-4.0.7, ffbase-0.13.3, fftw-1.0-7, fftwtools-0.9-11, fields-13.3, filehash-2.4-3, finalfit-1.0.4, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-8, flashClust-1.01-2, flexclust-1.4-1, flexmix-2.3-18, fma-2.4, FME-1.3.6.2, fmri-1.9.6, FNN-1.1.3.1, fontawesome-0.2.2, forcats-0.5.1, foreach-1.5.2, forecast-8.16, foreign-0.8-82, formatR-1.12, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.2, furrr-0.3.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.26.1, future.apply-1.9.0, gam-1.20.1, gamlss-5.4-3, gamlss.data-6.0-2, gamlss.dist-6.0-3, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-6, gap.datasets-0.0.5, gapfill-0.9.6-1, gargle-1.2.0, gaussquad-1.0-3, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0.1, gdistance-1.3-6, gee-4.13-23, geeM-0.10.1, geepack-1.3.4, geex-1.0.12, geiger-2.0.10, GeneNet-1.2.16, generics-0.1.2, genoPlotR-0.8.11, GenSA-1.1.7, geojsonsf-2.0.3, geometries-0.2.0, geometry-0.4.6, gert-1.6.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.2, ggbeeswarm-0.6.0, ggdag-0.2.4, ggExtra-0.10.0, ggfan-0.1.3, ggforce-0.3.3, ggformula-0.10.2, ggfun-0.0.9, ggh4x-0.2.2, ggnetwork-0.5.10, ggplot2-3.3.6, ggplotify-0.1.0, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.3, ggstance-0.3.5, ggvenn-0.1.9, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.2, git2r-0.30.1, gitcreds-0.1.1, GJRM-0.2-6, glasso-1.11, gld-2.6.4, gllvm-1.3.1, glmmML-1.1.3, glmmTMB-1.1.3, glmnet-4.1-4, GlobalOptions-0.1.2, globals-0.15.0, glue-1.6.2, gmm-1.6-6, gmodels-2.18.1.1, gmp-0.6-5, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.0, gower-1.0.0, GPArotation-2022.4-1, gplots-3.1.3, graphics, graphlayouts-0.8.0, grDevices, grf-2.1.0, grid, gridBase-0.4-7, gridExtra-2.3, gridGraphics-0.5-1, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.2, gsalib-2.1, gsl-2.1-7.1, gsw-1.0-6, gt-0.6.0, gtable-0.3.0, gtools-3.9.2.2, gtsummary-1.6.1, GUTS-1.2.3, gWidgets2-1.0-9, gWidgets2tcltk-1.0-8, GxEScanR-2.0.2, h2o-3.36.1.2, hal9001-0.4.3, hardhat-1.1.0, harmony-0.1.0, hash-2.2.6.2, haven-2.5.0, hdf5r-1.3.5, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HGNChelper-0.8.1, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.7-0, hms-1.1.1, Hmsc-3.0-11, htmlTable-2.4.0, htmltools-0.5.2, htmlwidgets-1.5.4, httpcode-0.3.0, httpuv-1.6.5, httr-1.4.3, huge-1.3.5, hunspell-3.0.1, hwriter-1.3.2.1, HWxtest-1.1.9, hypergeo-1.2-13, ica-1.0-2, IDPmisc-1.1.20, idr-1.3, ids-1.0.1, ie2misc-0.8.8, igraph-1.3.2, image.binarization-0.1.2, imager-0.42.13, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0.1, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-13, irace-3.4.1, irlba-2.3.5, ismev-1.42, Iso-0.0-18.1, isoband-0.2.5, ISOcodes-2022.01.10, ISOweek-0.6-2, iterators-1.0.14, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-3, jpeg-0.1-9, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.8.0, jstable-1.0.7, kde1d-1.0.4, kedd-1.0.3, kernlab-0.9-31, KernSmooth-2.23-20, kinship2-1.9.6, klaR-1.7-0, knitr-1.39, KODAMA-1.9, kohonen-3.0.11, ks-1.13.5, labdsv-2.0-1, labeling-0.4.2, labelled-2.9.1, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.3, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-29, lava-1.6.10, lavaan-0.6-11, lazy-1.2-17, lazyeval-0.2.2, LCFdata-2.0, lda-1.4.2, ldbounds-2.0.0, leafem-0.2.0, leaflet-2.1.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.4.2, lhs-1.1.5, libcoin-1.0-9, lifecycle-1.0.1, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-4, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-29, LMERConvenienceFunctions-3.0, lmerTest-3.1-3, lmom-2.9, Lmoments-1.3-1, lmtest-0.9-40, lobstr-1.1.2, locfdr-1.1-8, locfit-1.5-9.5, logcondens-2.1.6, logger-0.2.2, logistf-1.24.1, logspline-2.1.17, longitudinal-1.1.13, longmemo-1.1-2, loo-2.5.1, lpSolve-5.6.15, lpSolveAPI-5.5.2.0-17.7, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.8.0, lwgeom-0.2-8, magic-1.6-0, magick-2.7.3, magrittr-2.0.3, MALDIquant-1.21, manipulateWidget-0.11.1, mapproj-1.2.8, maps-3.4.0, maptools-1.1-4, markdown-1.1, MASS-7.3-57, Matching-4.10-2, MatchIt-4.4.0, mathjaxr-1.6-0, matlab-1.0.4, Matrix-1.4-1, matrixcalc-1.0-5, MatrixModels-0.5-0, matrixStats-0.62.0, maxLik-1.5-2, maxlike-0.1-8, maxnet-0.1.4, mboost-2.9-7, mclust-5.4.10, mcmc-0.9-7, MCMCpack-1.6-3, mcmcse-1.5-0, mda-0.5-3, medflex-0.6-7, mediation-4.5.0, memoise-2.0.1, memuse-4.2-1, MESS-0.5.9, metadat-1.2-0, metafor-3.4-0, MetaUtility-2.1.2, methods, mets-1.2.9, mgcv-1.8-40, mgsub-1.7.3, mhsmm-0.4.16, mi-1.1, mice-3.14.0, miceadds-3.13-12, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-2, minqa-1.2.4, mirt-1.36.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.5, mitml-0.4-3, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.9, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.0, mlrMBO-1.1.5.1, mltools-0.3.5, mnormt-2.1.0, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14.1, MonteCarlo-1.0.6, mosaicCore-0.9.2.1, mpath-0.4-2.22, mRMRe-2.1.2, msm-1.6.9, mstate-0.3.2, multcomp-1.4-19, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.2.1, mvnfast-0.2.7, mvtnorm-1.1-3, nabor-0.5.0, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, ncdf4-1.19, NCmisc-1.1.6, network-1.17.2, networkDynamic-0.11.2, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-158, nloptr-2.0.3, NLP-0.2-1, nlsem-0.8, nnet-7.3-17, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-10.0, nortest-1.0-4, np-0.60-11, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.3.2, oce-1.7-6, OceanView-1.0.6, oddsratio-2.0.1, openair-2.10-0, OpenMx-2.20.6, openssl-2.0.2, openxlsx-4.2.5, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2022-4.30, optmatch-0.10.3, optparse-1.7.1, ordinal-2019.12-10, origami-1.0.5, orthopolynom-1.0-6, outliers-0.15, packrat-0.8.0, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallel, parallelDist-0.2.6, parallelly-1.32.0, parallelMap-1.5.1, ParamHelpers-1.14, parsedate-1.3.0, party-1.3-10, partykit-1.2-16, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.5-0, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.2, pcaPP-2.0-1, pdp-0.8.1, PearsonDS-1.2.2, pec-2022.05.04, penalized-0.9-52, penfa-0.1.1, peperr-1.4, PermAlgo-1.2, permute-0.9-7, phangorn-2.9.0, pheatmap-1.0.12, phylobase-0.8.10, phytools-1.0-3, pillar-1.7.0, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.3.1, pkgconfig-2.0.3, pkgload-1.2.4, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.3, plotly-4.10.0, plotmo-3.6.2, plotrix-3.8-2, pls-2.8-0, plyr-1.8.7, PMA-1.2.1, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.6.0.1, polspline-1.1.20, polyclip-1.10-0, polycor-0.8-1, polynom-1.4-1, posterior-1.2.2, ppcor-1.1, prabclus-2.3-2, pracma-2.3.8, praise-1.0.0, PresenceAbsence-1.1.10, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, pROC-1.18.0, processx-3.6.1, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.10.1, projpred-2.1.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-27, proxyC-0.3.3, pryr-0.1.5, ps-1.7.1, pscl-1.5.5, pspline-1.0-19, psych-2.2.5, Publish-2020.12.23, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.4, qgraph-1.9.2, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quanteda-3.2.3, quantmod-0.4.20, quantreg-5.93, questionr-0.7.7, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.2, R.oo-1.25.0, R.rsp-0.44.0, R.utils-2.11.0, R2WinBUGS-2.1-21, R6-2.5.1, random-0.2.6, randomForest-4.7-1.1, randomForestSRC-3.1.0, randtoolbox-2.0.1, rangeModelMetadata-0.1.4, ranger-0.14.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.5-15, rasterVis-0.51.2, ratelimitr-0.4.1, RBesT-1.6-6, rbibutils-2.2.8, rbison-1.0.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2022-4.30, RCircos-1.2.2, rcmdcheck-1.4.0, RColorBrewer-1.1-3, Rcpp-1.0.8.3, RcppArmadillo-0.11.2.0.0, RcppEigen-0.3.3.9.2, RcppGSL-0.3.11, RcppParallel-5.1.5, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-2.1.3, RcppTOML-0.1.7, RCurl-1.98-1.7, rda-1.0.2-2.1, Rdpack-2.3.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-2.1.2, readxl-1.4.0, rebird-1.3.0, recipes-0.2.0, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, relsurv-2.2-7, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.2, rentrez-1.2.3, renv-0.15.5, reprex-2.0.1, resample-0.6, reshape-0.8.9, reshape2-1.4.4, reticulate-1.25, rex-1.2.1, rgbif-3.7.2, RGCCA-2.1.2, rgdal-1.5-32, rgeos-0.5-9, rgexf-0.16.2, rgl-0.109.2, Rglpk-0.6-4, RhpcBLASctl-0.21-247.1, ridigbio-0.3.5, RInside-0.2.17, rio-0.5.29, riskRegression-2022.03.22, ritis-1.0.0, RItools-0.1-18, rJava-1.0-6, rjson-0.2.21, RJSONIO-1.3-1.6, rlang-1.0.2, rle-0.9.2, rlecuyer-0.3-5, rlemon-0.2.0, rlist-0.4.6.2, rmarkdown-2.14, rmeta-3.0, Rmpfr-0.8-9, Rmpi-0.6-9.2, rms-6.3-0, RMTstat-0.3.1, rncl-0.8.6, rnetcarto-0.2.5, RNeXML-2.4.7, rngtools-1.5.2, rngWELL-0.10-7, robustbase-0.95-0, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.3, roptim-0.1.6, rotl-3.0.12, roxygen2-7.2.0, rpact-3.3.0, rpart-4.1.16, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.3, rrcov-1.7-0, rredlist-0.7.0, rsconnect-0.8.26, Rserve-1.8-10, RSNNS-0.4-14, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.2.14, Rssa-1.0.4, rstan-2.21.5, rstantools-2.2.0, rstatix-0.7.0, rstudioapi-0.13, rtdists-0.11-5, Rtsne-0.16, Rttf2pt1-1.3.10, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvertnet-0.8.2, rvest-1.0.2, rvinecopulib-0.6.1.1.3, Rvmmin-2018-4.17.1, RWeka-0.4-44, RWekajars-3.9.3-2, s2-1.0.7, sampling-2.9, sandwich-3.0-2, sass-0.4.1, SBdecomp-1.2, scales-1.2.0, scam-1.2-12, scatterpie-0.1.8, scatterplot3d-0.3-41, sctransform-0.3.3, SDMTools-1.1-221.2, seewave-2.2.0, segmented-1.6-0, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-6, sendmailR-1.2-1.1, sensemakr-0.1.4, sentometrics-1.0.0, seqinr-4.2-16, servr-0.24, sessioninfo-1.2.2, setRNG-2022.4-1, sf-1.0-7, sfheaders-0.4.0, sfsmisc-1.1-13, shadowtext-0.1.2, shape-1.4.6, shapefiles-0.7, shiny-1.7.1, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.4, slam-0.1-50, sm-2.2-5.7, smoof-1.6.0.3, smoother-1.1, sn-2.0.2, sna-2.7, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.5-0, spaa-0.2.2, spam-2.8-0, spaMM-3.12.0, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-15, spatstat-2.3-4, spatstat.core-2.4-4, spatstat.data-2.2-0, spatstat.geom-2.4-0, spatstat.linnet-2.3-2, spatstat.random-2.2-0, spatstat.sparse-2.1-1, spatstat.utils-2.3-1, spData-2.0.1, splines, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.0, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.3, stars-0.5-5, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.4.36, statnet-2019.6, statnet.common-4.6.0, stats, stats4, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.8, stringi-1.7.6, stringr-1.4.0, strucchange-1.5-3, styler-1.7.0, subplex-1.8, SuperLearner-2.0-28, SuppDists-1.1-9.7, survey-4.1-1, survival-3.3-1, survivalROC-1.0.3, svd-0.5.1, svglite-2.1.1, swagger-3.33.1, symmoments-1.2.1, sys-3.4, systemfonts-1.0.4, tableone-0.13.2, tau-0.0-24, taxize-0.9.100, tcltk, tcltk2-1.2-11, tclust-1.5-1, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.1.0, terra-1.5-34, testit-0.13, testthat-3.1.4, textcat-1.0-8, textplot-0.2.2, TFisher-0.2.0, TH.data-1.1-1, threejs-0.3.3, tibble-3.1.7, tictoc-1.0.1, tidygraph-1.2.1, tidyr-1.2.0, tidyselect-1.1.2, tidytext-0.3.3, tidytree-0.4.1, tidyverse-1.3.1, tiff-0.1-11, timeDate-3043.102, timereg-2.0.2, tinytex-0.40, tkrplot-0.0-26, tm-0.7-8, tmap-3.3-3, tmaptools-3.1-1, TMB-1.9.0, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.5, tokenizers-0.2.1, tools, topicmodels-0.2-12, TraMineR-2.2-4, tree-1.0-42, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-51, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.3, tuneR-1.4.0, tvem-1.3.1, twang-2.5, tweedie-2.3.3, tweenr-1.0.2, tzdb-0.3.0, ucminf-1.1-4, udpipe-0.8.11, unbalanced-2.0, unikn-0.8.0, uniqueAtomMat-0.1-3-2, units-0.8-0, unmarked-1.2.5, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.1.6, utf8-1.2.2, utils, uuid-1.1-0, V8-4.2.0, varhandle-2.0.5, vcd-1.4-10, vcfR-1.12.0, vctrs-0.4.1, vegan-2.6-2, VennDiagram-1.7.3, VGAM-1.1-6, VIM-6.1.1, VineCopula-2.4.4, vioplot-0.3.7, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.1.0, vroom-1.5.7, VSURF-1.1.0, waldo-0.4.0, waveslim-1.8.3, wdm-0.2.3, webshot-0.5.3, webutils-1.1, weights-1.0.4, WeightSVM-1.7-9, wellknown-0.7.4, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.5.0, wk-0.6.0, word2vec-0.3.4, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.4.0, xfun-0.31, xgboost-1.6.0.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.10, xml2-1.3.3, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.3.5, yulab.utils-0.0.5, zeallot-0.1.0, zip-2.2.0, zoo-1.8-10 + +### R/4.2.0-foss-2021b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-19, ADGofTest-0.3, admisc-0.26, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-3.3, alabama-2022.4-1, AlgDesign-1.2.0, alluvial-0.1-2, animation-2.7, aod-1.3.2, apcluster-1.4.9, ape-5.6-2, argparse-2.1.5, arm-1.12-2, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-10, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.4.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.7, BayesLogit-2.1, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.9.0, BB-2019.10-1, BBmisc-1.12, bbmle-1.0.24, BCEE-1.3.0, BDgraph-2.66, bdsmatrix-1.3-4, beanplot-1.3.1, beeswarm-0.4.0, betareg-3.1-4, BH-1.78.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.5, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-3, biom-0.3.12, biomod2-3.5.1, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.4-1, blob-1.2.3, BMA-3.18.17, bmp-0.3, bnlearn-4.7.1, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-7, brglm-0.7.2, bridgedist-0.1.1, bridgesampling-1.1-2, brio-1.1.3, brms-2.17.0, Brobdingnag-1.2-7, broom-0.8.0, broom.helpers-1.7.0, broom.mixed-0.2.9.4, bslib-0.3.1, bst-0.3-23, c-o, cachem-1.0.6, Cairo-1.5-15, calibrate-1.7.7, callr-3.7.0, car-3.0-12, carData-3.0-5, caret-6.0-92, catlearn-0.9.1, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.1.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-56, circlize-0.4.14, circular-0.4-94.1, class-7.3-20, classInt-0.4-3, cli-3.3.0, clipr-0.8.0, clisymbols-1.2.0, clue-0.3-60, cluster-2.1.3, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.4, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.1, cobalt-4.3.2, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-2, collapse-1.7.6, colorspace-2.0-3, colourpicker-1.1.1, combinat-0.0-8, ComICS-1.0.4, commonmark-1.8.0, compositions-2.0-4, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.3.0, contfrac-1.1-12, copCAR-2.0-4, copula-1.0-1, corpcor-1.6.10, corrplot-0.92, covr-3.5.1, CovSel-1.2.1, covsim-0.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.4.2, crayon-1.5.1, credentials-1.3.2, crosstalk-1.2.0, crul-1.2.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.4, cubelyr-1.0.1, curl-4.3.2, cvAUC-1.1.4, CVST-0.2-3, d-a, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.2, data.tree-1.0.0, DataCombine-0.2.21, date-1.2-39, dbarts-0.9-22, DBI-1.1.2, dbplyr-2.1.1, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-39, debugme-1.1.0, deldir-1.0-6, dendextend-1.15.2, DEoptim-2.2-6, DEoptimR-1.0-11, Deriv-4.1.3, desc-1.4.1, DescTools-0.99.44, deSolve-1.32, devtools-2.4.3, dfidx-0.0-4, DHARMa-0.4.5, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.9, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.5, digest-0.6.29, dimRed-0.2.5, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-5, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, distributional-0.3.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-2.0.2, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.2, doSNOW-1.0.20, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.8, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.22, dtangle-2.0.9, dtplyr-1.2.1, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-9, earth-5.3.1, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.2, elliptic-1.4-0, emdbook-1.3.12, emulator-1.2-21, energy-1.7-10, ENMeval-2.0.3, entropy-1.3.1, EnvStats-2.7.0, ergm-4.1.2, ergm.count-4.0.2, evaluate-0.15, EValue-4.1.3, evd-2.3-6, Exact-3.1, expm-0.999-6, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.18, extrafontdb-1.0, extRemes-2.1-1, FactoMineR-2.4, FactorCopula-0.8, fail-1.3, fansi-1.0.3, farver-2.1.0, fastcluster-1.2.3, fasterize-1.0.3, fastICA-1.2-3, fastmap-1.1.0, fastmatch-1.1-3, fdrtool-1.2.17, feather-0.3.5, ff-4.0.5, ffbase-0.13.3, fftw-1.0-7, fftwtools-0.9-11, fields-13.3, filehash-2.4-3, finalfit-1.0.4, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-8, flashClust-1.01-2, flexclust-1.4-1, flexmix-2.3-17, fma-2.4, FME-1.3.6.2, fmri-1.9.6, FNN-1.1.3, fontawesome-0.2.2, forcats-0.5.1, foreach-1.5.2, forecast-8.16, foreign-0.8-82, formatR-1.12, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.2, furrr-0.2.3, futile.logger-1.4.3, futile.options-1.0.1, future-1.25.0, future.apply-1.9.0, g-r, g-r, g-r, gam-1.20.1, gamlss-5.4-3, gamlss.data-6.0-2, gamlss.dist-6.0-3, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-1, gapfill-0.9.6-1, gargle-1.2.0, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-22, geeM-0.10.1, geepack-1.3.3, geex-1.0.12, geiger-2.0.7, GeneNet-1.2.16, generics-0.1.2, genoPlotR-0.8.11, GenSA-1.1.7, geojsonsf-2.0.2, geometries-0.2.0, geometry-0.4.6, gert-1.6.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.2, ggbeeswarm-0.6.0, ggdag-0.2.4, ggExtra-0.10.0, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.10, ggplot2-3.3.5, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.3, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.2, git2r-0.30.1, gitcreds-0.1.1, GJRM-0.2-6, glasso-1.11, gld-2.6.4, gllvm-1.3.1, glmmML-1.1.2, glmmTMB-1.1.3, glmnet-4.1-4, GlobalOptions-0.1.2, globals-0.14.0, glue-1.6.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-5, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.0, gower-1.0.0, GPArotation-2022.4-1, gplots-3.1.3, graphlayouts-0.8.0, grf-2.1.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.2, gsalib-2.1, gsl-2.1-7.1, gsw-1.0-6, gt-0.5.0, gtable-0.3.0, gtools-3.9.2, gtsummary-1.6.0, GUTS-1.2.3, gWidgets2-1.0-9, gWidgets2tcltk-1.0-8, GxEScanR-2.0.2, h2o-3.36.0.4, hal9001-0.4.3, hardhat-0.2.0, harmony-0.1.0, hash-2.2.6.2, haven-2.5.0, hdf5r-1.3.5, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.7-0, hms-1.1.1, Hmsc-3.0-11, htmlTable-2.4.0, htmltools-0.5.2, htmlwidgets-1.5.4, httpcode-0.3.0, httpuv-1.6.5, httr-1.4.2, huge-1.3.5, hunspell-3.0.1, hwriter-1.3.2.1, HWxtest-1.1.9, hypergeo-1.2-13, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ids-1.0.1, ie2misc-0.8.8, igraph-1.3.1, image.binarization-0.1.2, imager-0.42.13, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0.1, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-12, irace-3.4.1, irlba-2.3.5, ismev-1.42, Iso-0.0-18.1, isoband-0.2.5, ISOcodes-2022.01.10, iterators-1.0.14, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-3, jpeg-0.1-9, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.8.0, jstable-1.0.7, kde1d-1.0.4, kedd-1.0.3, kernlab-0.9-30, KernSmooth-2.23-20, klaR-1.7-0, knitr-1.38, KODAMA-1.9, kohonen-3.0.11, ks-1.13.5, labdsv-2.0-1, labeling-0.4.2, labelled-2.9.0, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.3, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-29, lava-1.6.10, lavaan-0.6-11, lazy-1.2-17, lazyeval-0.2.2, lda-1.4.2, ldbounds-2.0.0, leafem-0.2.0, leaflet-2.1.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.9, lhs-1.1.5, libcoin-1.0-9, lifecycle-1.0.1, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-4, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-29, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-40, lobstr-1.1.1, locfdr-1.1-8, locfit-1.5-9.5, logcondens-2.1.6, logistf-1.24.1, logspline-2.1.17, longitudinal-1.1.13, longmemo-1.1-2, loo-2.5.1, lpSolve-5.6.15, lpSolveAPI-5.5.2.0-17.7, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.8.0, lwgeom-0.2-8, m-e, magic-1.6-0, magick-2.7.3, magrittr-2.0.3, MALDIquant-1.21, manipulateWidget-0.11.1, mapproj-1.2.8, maps-3.4.0, maptools-1.1-4, markdown-1.1, MASS-7.3-57, Matching-4.10-2, MatchIt-4.3.4, mathjaxr-1.6-0, matlab-1.0.2, Matrix-1.4-1, matrixcalc-1.0-5, MatrixModels-0.5-0, matrixStats-0.62.0, maxLik-1.5-2, maxlike-0.1-8, maxnet-0.1.4, mboost-2.9-6, mclust-5.4.9, mcmc-0.9-7, MCMCpack-1.6-3, mcmcse-1.5-0, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.1, memuse-4.2-1, metadat-1.2-0, metafor-3.4-0, MetaUtility-2.1.2, mets-1.2.9, mgcv-1.8-40, mgsub-1.7.3, mhsmm-0.4.16, mi-1.0, mice-3.14.0, miceadds-3.12-26, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-2, minqa-1.2.4, mirt-1.36.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.5, mitml-0.4-3, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.9, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14, MonteCarlo-1.0.6, mpath-0.4-2.22, mRMRe-2.1.2, msm-1.6.9, mstate-0.3.2, multcomp-1.4-18, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.2.1, mvnfast-0.2.7, mvtnorm-1.1-3, nabor-0.5.0, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, ncdf4-1.19, NCmisc-1.1.6, network-1.17.1, networkDynamic-0.11.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-157, nloptr-2.0.0, NLP-0.2-1, nlsem-0.8, nnet-7.3-17, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-10.0, nortest-1.0-4, np-0.60-11, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.3.2, oce-1.7-2, OceanView-1.0.6, oddsratio-2.0.1, openair-2.9-1, OpenMx-2.20.6, openssl-2.0.0, openxlsx-4.2.5, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2021-10.12, optmatch-0.10.0, optparse-1.7.1, ordinal-2019.12-10, origami-1.0.5, orthopolynom-1.0-5, outliers-0.15, p-a, packrat-0.7.0, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallelly-1.31.1, parallelMap-1.5.1, ParamHelpers-1.14, parsedate-1.3.0, party-1.3-9, partykit-1.2-15, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.5-0, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.2, pcaPP-1.9-74, pdp-0.7.0, PearsonDS-1.2.2, pec-2022.03.06, penalized-0.9-52, penfa-0.1.1, peperr-1.4, PermAlgo-1.1, permute-0.9-7, phangorn-2.8.1, pheatmap-1.0.12, phylobase-0.8.10, phytools-1.0-3, pillar-1.7.0, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.3.1, pkgconfig-2.0.3, pkgload-1.2.4, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.2, plotly-4.10.0, plotmo-3.6.1, plotrix-3.8-2, pls-2.8-0, plyr-1.8.7, PMA-1.2.1, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.6.0.1, polspline-1.1.20, polyclip-1.10-0, polycor-0.8-1, polynom-1.4-1, posterior-1.2.1, ppcor-1.1, prabclus-2.3-2, pracma-2.3.8, praise-1.0.0, PresenceAbsence-1.1.10, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, pROC-1.18.0, processx-3.5.3, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.10.0, projpred-2.1.1, promises-1.2.0.1, proto-1.0.0, proxy-0.4-26, pryr-0.1.5, ps-1.7.0, pscl-1.5.5, pspline-1.0-19, psych-2.2.3, Publish-2020.12.23, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.4, qgraph-1.9.2, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.88, questionr-0.7.7, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.11.0, R6-2.5.1, randomForest-4.7-1, randomForestSRC-3.1.0, randtoolbox-1.31.1, rangeModelMetadata-0.1.4, ranger-0.13.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.5-15, rasterVis-0.51.2, ratelimitr-0.4.1, rbibutils-2.2.8, rbison-1.0.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.2, rcmdcheck-1.4.0, RColorBrewer-1.1-3, Rcpp-1.0.8.3, RcppArmadillo-0.11.0.0.0, RcppEigen-0.3.3.9.2, RcppGSL-0.3.11, RcppParallel-5.1.5, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-2.1.3, RcppTOML-0.1.7, RCurl-1.98-1.6, rda-1.0.2-2.1, Rdpack-2.3, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-2.1.2, readxl-1.4.0, rebird-1.3.0, recipes-0.2.0, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, relsurv-2.2-7, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.2, rentrez-1.2.3, renv-0.15.5, reprex-2.0.1, resample-0.4, reshape-0.8.9, reshape2-1.4.4, reticulate-1.24, rex-1.2.1, rgbif-3.7.2, RGCCA-2.1.2, rgdal-1.5-31, rgeos-0.5-9, rgexf-0.16.2, rgl-0.108.3, Rglpk-0.6-4, RhpcBLASctl-0.21-247.1, ridigbio-0.3.5, RInside-0.2.17, rio-0.5.29, riskRegression-2022.03.22, ritis-1.0.0, RItools-0.1-18, rJava-1.0-6, rjson-0.2.21, RJSONIO-1.3-1.6, rlang-1.0.2, rle-0.9.2, rlecuyer-0.3-5, rlemon-0.2.0, rmarkdown-2.14, rmeta-3.0, Rmpfr-0.8-7, Rmpi-0.6-9.2, rms-6.3-0, RMTstat-0.3.1, rncl-0.8.6, rnetcarto-0.2.4, RNeXML-2.4.6, rngtools-1.5.2, rngWELL-0.10-7, robustbase-0.95-0, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.3, rotl-3.0.12, roxygen2-7.1.2, rpact-3.2.3, rpart-4.1.16, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.3, rrcov-1.7-0, rredlist-0.7.0, rsconnect-0.8.25, Rserve-1.8-10, RSNNS-0.4-14, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.2.12, Rssa-1.0.4, rstan-2.21.5, rstantools-2.2.0, rstatix-0.7.0, rstudioapi-0.13, rtdists-0.11-5, Rtsne-0.16, Rttf2pt1-1.3.10, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvertnet-0.8.2, rvest-1.0.2, rvinecopulib-0.6.1.1.3, Rvmmin-2018-4.17.1, RWeka-0.4-44, RWekajars-3.9.3-2, s-p, s-t, s-t, s2-1.0.7, sampling-2.9, sandwich-3.0-1, sass-0.4.1, SBdecomp-1.2, scales-1.2.0, scam-1.2-12, scatterplot3d-0.3-41, sctransform-0.3.3, SDMTools-1.1-221.2, seewave-2.2.0, segmented-1.5-0, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-5, sendmailR-1.2-1, sensemakr-0.1.4, seqinr-4.2-8, servr-0.24, sessioninfo-1.2.2, setRNG-2022.4-1, sf-1.0-7, sfheaders-0.4.0, sfsmisc-1.1-13, shape-1.4.6, shapefiles-0.7, shiny-1.7.1, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.4, slam-0.1-50, sm-2.2-5.7, smoother-1.1, sn-2.0.2, sna-2.6, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-7, spaa-0.2.2, spam-2.8-0, spaMM-3.11.14, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-15, spatstat-2.3-4, spatstat.core-2.4-2, spatstat.data-2.2-0, spatstat.geom-2.4-0, spatstat.linnet-2.3-2, spatstat.random-2.2-0, spatstat.sparse-2.1-1, spatstat.utils-2.3-0, spData-2.0.1, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.0, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.3, stars-0.5-5, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.4.36, statnet-2019.6, statnet.common-4.5.0, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.8, stringi-1.7.6, stringr-1.4.0, strucchange-1.5-2, styler-1.7.0, subplex-1.8, SuperLearner-2.0-28, SuppDists-1.1-9.7, survey-4.1-1, survival-3.3-1, survivalROC-1.0.3, svd-0.5.1, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.13.2, taxize-0.9.100, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.0.2, terra-1.5-21, testit-0.13, testthat-3.1.3, TFisher-0.2.0, TH.data-1.1-0, threejs-0.3.3, tibble-3.1.6, tictoc-1.0.1, tidygraph-1.2.1, tidyr-1.2.0, tidyselect-1.1.2, tidytext-0.3.2, tidyverse-1.3.1, tiff-0.1-11, timeDate-3043.102, timereg-2.0.2, tinytex-0.38, tkrplot-0.0-26, tm-0.7-8, tmap-3.3-3, tmaptools-3.1-1, TMB-1.8.1, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.5, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-3, tree-1.0-41, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-50, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.3, tuneR-1.4.0, twang-2.5, tweedie-2.3.3, tweenr-1.0.2, tzdb-0.3.0, u-t, ucminf-1.1-4, unbalanced-2.0, unikn-0.8.0, uniqueAtomMat-0.1-3-2, units-0.8-0, unmarked-1.1.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.1.5, utf8-1.2.2, uuid-1.1-0, V8-4.1.0, vcd-1.4-9, vcfR-1.12.0, vctrs-0.4.1, vegan-2.6-2, VennDiagram-1.7.3, VGAM-1.1-6, VIM-6.1.1, VineCopula-2.4.3, vioplot-0.3.7, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.1.0, vroom-1.5.7, VSURF-1.1.0, waldo-0.4.0, waveslim-1.8.2, wdm-0.2.3, webshot-0.5.3, weights-1.0.4, WeightSVM-1.7-9, wellknown-0.7.4, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.5.0, wk-0.6.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.4.0, xfun-0.30, xgboost-1.6.0.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.9, xml2-1.3.3, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.3.5, zeallot-0.1.0, zip-2.2.0, zoo-1.8-10 + +### R/4.1.2-foss-2021b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-18, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.2, alabama-2015.3-1, AlgDesign-1.2.0, alluvial-0.1-2, AnalyzeFMRI-1.1-24, animation-2.7, aod-1.3.1, apcluster-1.4.9, ape-5.5, argparse-2.1.2, arm-1.12-2, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-8, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.3.0, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, BayesLogit-2.1, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.1, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.24, BCEE-1.3.0, BDgraph-2.64, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.4.0, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.5, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-2, biom-0.3.12, biomod2-3.5.1, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.3-17, blob-1.2.2, BMA-3.18.15, bmp-0.3, bnlearn-4.7, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.2, bridgedist-0.1.0, bridgesampling-1.1-2, brio-1.1.2, brms-2.16.1, Brobdingnag-1.2-6, broom-0.7.10, broom.helpers-1.4.0, broom.mixed-0.2.7, bslib-0.3.1, bst-0.3-23, c-o, cachem-1.0.6, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.7.0, car-3.0-11, carData-3.0-4, caret-6.0-90, catlearn-0.8, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-56, circlize-0.4.13, circular-0.4-93, class-7.3-19, classInt-0.4-3, cli-3.1.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-60, cluster-2.1.2, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cmprsk-2.2-11, cNORM-2.1.0, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-2, collapse-1.6.5, colorspace-2.0-2, colourpicker-1.1.1, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-2, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.2.0, copCAR-2.0-4, copula-1.0-1, corpcor-1.6.10, corrplot-0.90, covr-3.5.1, CovSel-1.2.1, covsim-0.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.4.0, crayon-1.4.2, credentials-1.3.1, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.2, cubelyr-1.0.1, curl-4.3.2, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.2, data.tree-1.0.0, DataCombine-0.2.21, date-1.2-39, dbarts-0.9-20, DBI-1.1.1, dbplyr-2.1.1, dcurver-0.9.2, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-1.0-6, dendextend-1.15.2, DEoptim-2.2-6, DEoptimR-1.0-9, Deriv-4.1.3, desc-1.4.0, DescTools-0.99.43, deSolve-1.30, devtools-2.4.2, dfidx-0.0-4, DHARMa-0.4.4, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.5, digest-0.6.28, dimRed-0.2.3, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-5, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, distributional-0.2.2, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-2.0.2, docstring-1.0.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.7, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.19, dtangle-2.0.9, dtplyr-1.1.0, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-9, earth-5.3.1, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.2, emdbook-1.3.12, emulator-1.2-21, energy-1.7-8, ENMeval-2.0.1, entropy-1.3.1, EnvStats-2.4.0, ergm-4.1.2, ergm.count-4.0.2, evaluate-0.14, EValue-4.1.2, evd-2.3-3, Exact-3.0, expm-0.999-6, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1-1, FactoMineR-2.4, FactorCopula-0.8, fail-1.3, fansi-0.5.0, farver-2.1.0, fastcluster-1.2.3, fasterize-1.0.3, fastICA-1.2-3, fastmap-1.1.0, fastmatch-1.1-3, fdrtool-1.2.16, feather-0.3.5, ff-4.0.5, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-13.3, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-6, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.2, fmri-1.9.6, FNN-1.1.3, fontawesome-0.2.2, forcats-0.5.1, foreach-1.5.1, forecast-8.15, foreign-0.8-81, formatR-1.11, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.23.0, future.apply-1.8.1, g-r, g-r, g-r, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-1, gapfill-0.9.6-1, gargle-1.2.0, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geex-1.0.12, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.1, genoPlotR-0.8.11, GenSA-1.1.7, geojsonsf-2.0.1, geometries-0.2.0, geometry-0.4.5, gert-1.4.1, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.2, ggbeeswarm-0.6.0, ggdag-0.2.4, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.10, ggplot2-3.3.5, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.3, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, GJRM-0.2-5.1, glasso-1.11, gld-2.6.2, gllvm-1.3.1, glmmML-1.1.1, glmmTMB-1.1.2.3, glmnet-4.1-2, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.0, gower-0.2.2, GPArotation-2014.11-1, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.2, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-7, gsw-1.0-6, gt-0.3.1, gtable-0.3.0, gtools-3.9.2, gtsummary-1.5.0, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.34.0.3, hal9001-0.4.1, harmony-0.1.0, hash-2.2.6.1, haven-2.4.3, hdf5r-1.3.4, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.6-0, hms-1.1.1, Hmsc-3.0-11, htmlTable-2.3.0, htmltools-0.5.2, htmlwidgets-1.5.4, httpcode-0.3.0, httpuv-1.6.3, httr-1.4.2, huge-1.3.5, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ids-1.0.1, ie2misc-0.8.6, igraph-1.2.7, image.binarization-0.1.2, imager-0.42.10, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-12, irace-3.4.1, irlba-2.3.3, ismev-1.42, Iso-0.0-18.1, isoband-0.2.5, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-9, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.7.2, jstable-1.0.7, kde1d-1.0.3, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-20, klaR-0.6-15, knitr-1.36, KODAMA-1.8, kohonen-3.0.10, ks-1.13.2, labdsv-2.0-1, labeling-0.4.2, labelled-2.9.0, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.2, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-29, lava-1.6.10, lavaan-0.6-9, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, ldbounds-1.1-1.1, leafem-0.1.6, leaflet-2.0.4.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.9, lhs-1.1.3, libcoin-1.0-9, lifecycle-1.0.1, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-27.1, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, lobstr-1.1.1, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.6, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lpSolveAPI-5.5.2.0-17.7, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.8.0, lwgeom-0.2-8, m-e, magic-1.5-9, magick-2.7.3, magrittr-2.0.1, MALDIquant-1.20, manipulateWidget-0.11.1, mapproj-1.2.7, maps-3.4.0, maptools-1.1-2, markdown-1.1, MASS-7.3-54, Matching-4.9-11, MatchIt-4.3.0, mathjaxr-1.4-0, matlab-1.0.2, Matrix-1.3-4, matrixcalc-1.0-5, MatrixModels-0.5-0, matrixStats-0.61.0, maxLik-1.5-2, maxlike-0.1-8, maxnet-0.1.4, mboost-2.9-5, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.6-0, mcmcse-1.5-0, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.2-1, metadat-1.0-0, metafor-3.0-2, MetaUtility-2.1.2, mets-1.2.9, mgcv-1.8-38, mgsub-1.7.3, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, mirt-1.35.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.4, mitml-0.4-3, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14, MonteCarlo-1.0.6, mpath-0.4-2.19, mRMRe-2.1.2, msm-1.6.9, mstate-0.3.2, multcomp-1.4-17, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.12, mvnfast-0.2.7, mvtnorm-1.1-3, nabor-0.5.0, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, ncdf4-1.17, NCmisc-1.1.6, network-1.17.1, networkDynamic-0.11.0, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-153, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-16, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-9.5, nortest-1.0-4, np-0.60-11, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.3.2, oce-1.4-0, OceanView-1.0.6, oddsratio-2.0.1, openair-2.8-6, OpenMx-2.19.8, openssl-1.4.5, openxlsx-4.2.4, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2021-10.12, optmatch-0.9-15, optparse-1.7.1, ordinal-2019.12-10, origami-1.0.5, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.7.0, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallelly-1.28.1, parallelMap-1.5.1, ParamHelpers-1.14, parsedate-1.2.1, party-1.3-9, partykit-1.2-15, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.5-0, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-74, pdp-0.7.0, PearsonDS-1.2.1, pec-2022.03.06, penalized-0.9-51, penfa-0.1.1, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.7.1, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-90, pillar-1.6.4, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.3, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.2, plotly-4.10.0, plotmo-3.6.1, plotrix-3.8-2, pls-2.8-0, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, posterior-1.1.0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, pROC-1.18.0, processx-3.5.2, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.9.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-26, pryr-0.1.5, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.9, Publish-2020.12.23, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.3, qgraph-1.9, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.86, questionr-0.7.5, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.11.0, R6-2.5.1, randomForest-4.6-14, randomForestSRC-2.13.0, randtoolbox-1.31.1, rangeModelMetadata-0.1.4, ranger-0.13.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.5-2, rasterVis-0.51.0, ratelimitr-0.4.1, rbibutils-2.2.4, rbison-1.0.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.4.0, RColorBrewer-1.1-2, Rcpp-1.0.7, RcppArmadillo-0.10.7.0.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.10, RcppParallel-5.1.4, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-1.0.0, RCurl-1.98-1.5, rda-1.0.2-2.1, Rdpack-2.1.2, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-2.0.2, readxl-1.3.1, rebird-1.3.0, recipes-0.1.17, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, relsurv-2.2-7, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.1, rentrez-1.2.3, renv-0.15.5, reprex-2.0.1, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.22, rex-1.2.0, rgbif-3.6.0, RGCCA-2.1.2, rgdal-1.5-27, rgeos-0.5-8, rgexf-0.16.2, rgl-0.107.14, Rglpk-0.6-4, RhpcBLASctl-0.21-247.1, ridigbio-0.3.5, RInside-0.2.16, rio-0.5.27, riskRegression-2022.03.09, ritis-1.0.0, RItools-0.1-17, rJava-1.0-5, rjson-0.2.20, RJSONIO-1.3-1.6, rlang-0.4.12, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.11, rmeta-3.0, Rmpfr-0.8-7, Rmpi-0.6-9.2, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5.2, rngWELL-0.10-7, robustbase-0.93-9, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.3, rotl-3.0.11, roxygen2-7.1.2, rpact-3.2.1, rpart-4.1-15, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.2, rrcov-1.6-0, rredlist-0.7.0, rsconnect-0.8.24, Rserve-1.7-3.1, RSNNS-0.4-14, Rsolnp-1.16, RSQLite-2.2.8, Rssa-1.0.4, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.9, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvertnet-0.8.2, rvest-1.0.2, rvinecopulib-0.6.1.1.1, Rvmmin-2018-4.17.1, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, s2-1.0.7, sampling-2.9, sandwich-3.0-1, sass-0.4.0, SBdecomp-1.1, scales-1.1.1, scam-1.2-12, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.8, segmented-1.3-4, selectr-0.4-2, sem-3.1-13, semPLS-1.0-10, semTools-0.5-5, sendmailR-1.2-1, sensemakr-0.1.4, seqinr-4.2-8, servr-0.23, sessioninfo-1.2.0, setRNG-2013.9-1, sf-1.0-3, sfheaders-0.4.0, sfsmisc-1.1-12, shape-1.4.6, shapefiles-0.7, shiny-1.7.1, shinydashboard-0.7.2, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.2, simex-1.8, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.7, smoother-1.1, sn-2.0.0, sna-2.6, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.7-0, spaMM-3.9.13, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-14, spatstat-2.2-0, spatstat.core-2.3-0, spatstat.data-2.1-0, spatstat.geom-2.3-0, spatstat.linnet-2.3-0, spatstat.sparse-2.0-0, spatstat.utils-2.2-0, spData-2.0.1, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.0, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, stars-0.5-3, startupmsg-0.9.6, StatMatch-1.4.0, statmod-1.4.36, statnet-2019.6, statnet.common-4.5.0, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.8, stringi-1.7.5, stringr-1.4.0, strucchange-1.5-2, styler-1.6.2, subplex-1.6, SuperLearner-2.0-28, SuppDists-1.1-9.5, survey-4.1-1, survival-3.2-13, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.13.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.0.2, terra-1.4-11, testit-0.13, testthat-3.1.0, TFisher-0.2.0, TH.data-1.1-0, threejs-0.3.3, tibble-3.1.5, tictoc-1.0.1, tidygraph-1.2.0, tidyr-1.1.4, tidyselect-1.1.1, tidytext-0.3.2, tidyverse-1.3.1, tiff-0.1-8, timeDate-3043.102, timereg-2.0.1, tinytex-0.34, tkrplot-0.0-26, tm-0.7-8, tmap-3.3-2, tmaptools-3.1-1, TMB-1.7.22, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-2, tree-1.0-41, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.4, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3.1, twang-2.5, tweedie-2.3.3, tweenr-1.0.2, tzdb-0.2.0, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-2, unmarked-1.1.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.1.3, utf8-1.2.2, uuid-1.0-2, V8-3.4.2, vcd-1.4-9, vcfR-1.12.0, vctrs-0.3.8, vegan-2.5-7, VennDiagram-1.7.0, VGAM-1.1-5, VIM-6.1.1, VineCopula-2.4.3, vioplot-0.3.7, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.1.0, vroom-1.5.5, VSURF-1.1.0, waldo-0.3.1, waveslim-1.8.2, wdm-0.2.2, webshot-0.5.2, WeightSVM-1.7-9, wellknown-0.7.4, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.1, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.2, wk-0.5.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.27, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.8, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.2.0, zoo-1.8-9 + +### R/4.1.0-foss-2021a + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.5, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.64, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.4.0, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-2, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.3-15, blob-1.2.1, BMA-3.18.15, bmp-0.3, bnlearn-4.6.1, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.2, bridgedist-0.1.0, bridgesampling-1.1-2, brio-1.1.2, brms-2.15.0, Brobdingnag-1.2-6, broom-0.7.6, broom.helpers-1.3.0, broom.mixed-0.2.6, bslib-0.2.5.1, bst-0.3-23, cachem-1.0.5, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.7.0, car-3.0-10, carData-3.0-4, caret-6.0-88, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-19, classInt-0.4-3, cli-2.5.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-59, cluster-2.1.2, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, collapse-1.6.5, colorspace-2.0-1, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compiler, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.88, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.7, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.2, cubelyr-1.0.1, curl-4.3.1, cvAUC-1.1.0, CVST-0.2-2, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, datasets, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.1, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.15.1, DEoptim-2.2-6, DEoptimR-1.0-9, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.41, deSolve-1.28, devtools-2.4.1, dfidx-0.0-4, DHARMa-0.4.1, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.4, digest-0.6.27, dimRed-0.2.3, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.6, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.18, dtangle-2.0.9, dtplyr-1.1.0, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-7, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.2, emdbook-1.3.12, emulator-1.2-21, energy-1.7-8, ENMeval-2.0.0, entropy-1.3.0, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1-1, FactoMineR-2.4, fail-1.3, fansi-0.5.0, farver-2.1.0, fastcluster-1.2.3, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-12.3, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-5, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.15, foreign-0.8-81, formatR-1.11, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-1, gapfill-0.9.6-1, gargle-1.1.0, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geex-1.0.12, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geojsonsf-2.0.1, geometries-0.2.0, geometry-0.4.5, gert-1.3.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.3.0, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, googledrive-1.0.1, googlesheets4-0.3.0, gower-0.2.2, gplots-3.1.1, graphics, graphlayouts-0.7.1, grDevices, grf-2.0.0, grid, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.1, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.1.3, hal9001-0.2.7, haven-2.4.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.5-0, hms-1.1.0, htmlTable-2.2.1, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.6.1, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ids-1.0.1, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.8, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-11, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.7.2, jstable-1.0.2, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-20, klaR-0.6-15, knitr-1.33, KODAMA-1.6, kohonen-3.0.10, ks-1.13.1, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.2.0, lattice-0.20-44, latticeExtra-0.6-29, lava-1.6.9, lavaan-0.6-8, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leafem-0.1.6, leaflet-2.0.4.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.8, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-27, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, lwgeom-0.2-7, magic-1.5-9, magick-2.7.2, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.11.0, maps-3.3.0, maptools-1.1-1, markdown-1.1, MASS-7.3-54, Matching-4.9-9, MatchIt-4.2.0, mathjaxr-1.4-0, Matrix-1.3-4, matrixcalc-1.0-4, MatrixModels-0.5-0, matrixStats-0.59.0, maxLik-1.4-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-5, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-3.0-1, methods, mgcv-1.8-36, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14, mpath-0.4-2.19, mRMRe-2.1.1, msm-1.6.8, multcomp-1.4-17, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.12, mvnfast-0.2.7, mvtnorm-1.1-1, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-16, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-9.5, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.4-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.4, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-14, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, packrat-0.6.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallel, parallelly-1.25.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.1, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-74, penalized-0.9-51, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.7.0, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-80, pillar-1.6.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.1, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.2, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.5.2, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.3, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.3, qgraph-1.6.9, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.11.0, ranger-0.12.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.4-10, rasterVis-0.50.2, ratelimitr-0.4.1, rbibutils-2.1.1, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.5.0.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.1.4, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.3, rda-1.0.2-2.1, Rdpack-2.1.2, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.16, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.0, rentrez-1.2.3, reprex-2.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.20, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.106.8, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-1.0-4, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.11, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.8, rmeta-3.0, Rmpi-0.6-9.1, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-8, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.18, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.7, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvest-1.0.0, Rvmmin-2018-4.17.1, RWeka-0.4-43, RWekajars-3.9.3-2, sampling-2.9, sandwich-3.0-1, sass-0.4.0, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-4, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.22, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-8, sfheaders-0.4.0, sfsmisc-1.1-11, shape-1.4.6, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-2.0.0, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.8.0, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-14, spatstat-2.1-0, spatstat.core-2.1-2, spatstat.data-2.1-0, spatstat.geom-2.1-0, spatstat.linnet-2.1-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0, spData-0.3.8, splines, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, stars-0.5-3, startupmsg-0.9.6, StatMatch-1.4.0, statmod-1.4.36, statnet-2019.6, statnet.common-4.4.1, stats, stats4, stdReg-3.4.1, stopwords-2.2, stringdist-0.9.6.3, stringi-1.6.2, stringr-1.4.0, strucchange-1.5-2, styler-1.4.1, subplex-1.6, SuperLearner-2.0-28, SuppDists-1.1-9.5, survey-4.0, survival-3.2-11, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, tableone-0.12.0, tabletools-0.1.0, taxize-0.9.99, tcltk, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.2-10, testit-0.13, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.2, tictoc-1.0.1, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.1, tidytext-0.3.1, tidyverse-1.3.1, tiff-0.1-8, timeDate-3043.102, timereg-2.0.0, tinytex-0.32, tkrplot-0.0-25, tm-0.7-8, tmap-3.3-2, tmaptools-3.1-1, TMB-1.7.20, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, tools, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.3, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.2, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-1, unmarked-1.1.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.2.1, utils, uuid-0.1-4, V8-3.4.2, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.8, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.6, vipor-0.4.5, viridis-0.6.1, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.1.5, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.2, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.23, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.6, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.2.0, zoo-1.8-9 + +### R/4.0.5-fosscuda-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.15.0, Brobdingnag-1.2-6, broom-0.7.6, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.6.0, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.4.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.7, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.1, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.4.0, dfidx-0.0-4, DHARMa-0.4.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.4, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-6, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.14, foreign-0.8-81, formatR-1.8, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.3.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.1, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.1, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.8, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-11, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.2, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.9, lavaan-0.6-8, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.1, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.1-1, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.19, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.4-0, OceanView-1.0.5, oddsratio-2.0.1, OpenCL-0.2-1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.6.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.24.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.6.3, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.1, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.5.1, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.3, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.11.0, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50.1, rbibutils-2.1, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.3, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.3.0, rentrez-1.2.3, reprex-2.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.5, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, RViennaCL-1.7.1.8, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-8, sfsmisc-1.1-10, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-2.0.0, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.34, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-2.1-0, spatstat.core-2.0-0, spatstat.data-2.1-0, spatstat.geom-2.0-1, spatstat.linnet-2.1-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.4.1, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-10, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-8, timeDate-3043.102, timereg-1.9.8, tinytex-0.31, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.2, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-1, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.2.1, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.7, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.6, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.22, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.6, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9 + +### R/4.0.5-foss-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.15.0, Brobdingnag-1.2-6, broom-0.7.6, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.6.0, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.4.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.7, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.1, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.4.0, dfidx-0.0-4, DHARMa-0.4.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.4, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-6, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.14, foreign-0.8-81, formatR-1.8, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.3.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.1, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.1, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.8, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-11, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.2, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.9, lavaan-0.6-8, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.1, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.1-1, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.19, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.4-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.6.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.24.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.6.3, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.1, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.5.1, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.3, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.11.0, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50.1, rbibutils-2.1, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.3, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.3.0, rentrez-1.2.3, reprex-2.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.5, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-8, sfsmisc-1.1-10, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-2.0.0, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.34, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-2.1-0, spatstat.core-2.0-0, spatstat.data-2.1-0, spatstat.geom-2.0-1, spatstat.linnet-2.1-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.4.1, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-10, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-8, timeDate-3043.102, timereg-1.9.8, tinytex-0.31, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.2, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-1, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.2.1, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.7, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.6, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.22, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.6, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9 + +### R/4.0.4-fosscuda-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.1, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.5, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.1, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.3.1, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.6, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.3.2, dfidx-0.0-4, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.3, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.13, foreign-0.8-81, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-1, gamlss.data-5.1-4, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.2.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.7, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-10, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.0, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-6, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.18, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.3-0, OceanView-1.0.5, oddsratio-2.0.1, OpenCL-0.2-1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.23.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.2, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.4.5, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.12, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.10.1, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50, rbibutils-2.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.3, reprex-1.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.1-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.3, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, RViennaCL-1.7.1.8, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-7, sfsmisc-1.1-8, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.2, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-1.64-1, spatstat.data-2.0-0, spatstat.utils-2.0-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-7, timeDate-3043.102, timereg-1.9.8, tinytex-0.30, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-0, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.6, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.2.0, xfun-0.21, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9 + +### R/4.0.4-foss-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.1, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.5, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.1, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.3.1, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.6, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.3.2, dfidx-0.0-4, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.3, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.13, foreign-0.8-81, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-1, gamlss.data-5.1-4, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.2.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.7, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-10, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.0, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-6, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.18, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.3-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.23.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.2, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.4.5, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.12, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.10.1, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50, rbibutils-2.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.3, reprex-1.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.1-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.3, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-7, sfsmisc-1.1-8, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.2, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-1.64-1, spatstat.data-2.0-0, spatstat.utils-2.0-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-7, timeDate-3043.102, timereg-1.9.8, tinytex-0.30, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-0, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.6, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.2.0, xfun-0.21, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9 + +### R/4.0.3-fosscuda-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.13, assertive-0.3-6, assertive.base-0.0-7, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5, awsMethods-1.1-1, b-a, backports-1.2.0, bacr-1.0.1, bartMachine-1.2.5.1, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.7.2, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, betareg-3.1-3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.5.3, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-12, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-25, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.0, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.2, bst-0.3-22, c-o, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.0, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.11, circular-0.4-93, class-7.3-17, classInt-0.4-3, cli-2.1.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.5, clusterRepro-0.9, clustree-0.4.3, clValid-0.6-9, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.3-1, colorspace-1.4-1, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-0, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-3, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.0, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.4, crayon-1.3.4, crosstalk-1.1.0.1, crul-1.0.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.13.2, data.tree-1.0.0, dbarts-0.9-18, DBI-1.1.0, dbplyr-2.0.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-2, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.1, desc-1.2.0, DescTools-0.99.38, deSolve-1.28, devtools-2.3.2, dfidx-0.0-3, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.2, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.1, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-0, downloader-0.4, dplyr-1.0.2, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.16, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-5, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-12, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-4.0.4, ffbase-0.13.1, fftw-1.0-6, fftwtools-0.9-9, fields-11.6, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.1-1, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.0, foreach-1.5.1, forecast-8.13, foreign-0.8-80, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-8, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.20.1, future.apply-1.6.0, g-r, g-r, g-r, gam-1.20, gamlss-5.2-0, gamlss.data-5.1-4, gamlss.dist-5.1-7, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-1, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-1.0.4, GGally-2.0.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.2, ggnetwork-0.5.8, ggplot2-3.3.2, ggpubr-0.4.0, ggraph-2.0.3, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.6, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.27.1, glasso-1.11, gld-2.6.2, gllvm-1.2.2, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.0-2, GlobalOptions-0.1.2, globals-0.13.1, glue-1.4.2, gmm-1.6-5, gmodels-2.18.1, gmp-0.6-1, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.0, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gtable-0.3.0, gtools-3.8.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.4-1, hms-0.5.3, htmlTable-2.1.0, htmltools-0.5.0, htmlwidgets-1.5.2, httpcode-0.3.0, httpuv-1.5.4, httr-1.4.2, huge-1.3.4.1, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.3, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.16, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.2, ISOcodes-2020.03.16, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jsonlite-1.7.1, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.30, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.4.2, labelled-2.7.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.4, lhs-1.1.1, libcoin-1.0-6, lifecycle-0.2.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-25, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.3.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.9, m-e, magic-1.5-9, magick-2.5.1, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.57.0, maxLik-1.4-4, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-3, mclust-5.4.6, mcmc-0.9-7, MCMCpack-1.4-9, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-33, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.11.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mitools-2.4, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.8, mlogit-1.1-1, mlr-2.18.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.3-26, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-14, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-150, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-14, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.1, OpenCL-0.2-1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pan-1.6, parallelly-1.21.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-5, partykit-1.2-10, pastecs-1.3.21, patchwork-1.0.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.4-8.6, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.4.6, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-11, pkgbuild-1.1.0, pkgconfig-2.0.3, pkgload-1.1.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2.1, plotmo-3.6.0, plotrix-3.7-8, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.2, processx-3.4.4, prodlim-2019.11.13, profileModel-0.6.0, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.1.1, proto-1.0.0, proxy-0.4-24, pryr-0.1.4, ps-1.4.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.9, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.17, quantreg-5.75, questionr-0.7.3, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.3-13, rasterVis-0.49, rbibutils-1.4, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.5, RcppArmadillo-0.10.1.0.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.8, RcppParallel-5.0.2, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.0, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.14, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.54, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.16, ritis-0.9.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.8, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.5, rmeta-3.0, Rmpi-0.6-9, rms-6.0-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-6, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-1.3-2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.1, Rssa-1.0.2, rstan-2.21.2, rstantools-2.1.1, rstatix-0.6.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-0.3.6, RViennaCL-1.7.1.8, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-3.0-0, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.1, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-0, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-4, servr-0.20, sessioninfo-1.1.1, setRNG-2013.9-1, sfsmisc-1.1-7, shape-1.4.5, shapefiles-0.7, shiny-1.5.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.1.2, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-4, spaa-0.2.2, spam-2.5-1, spaMM-3.5.0, SparseM-1.78, SPAtest-3.1.2, spatial-7.3-12, spatstat-1.64-1, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.5, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-6, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.0, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.1, tergm-3.7.0, testit-0.12, testthat-3.0.0, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.0.4, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.2, tidyselect-1.1.0, tidytext-0.2.6, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.8, tinytex-0.27, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.18, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-11, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-7, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-1.6.3, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-4, VIM-6.0.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.2, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.3.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.0.0, xfun-0.19, xgboost-1.4.1.1, xlsx-0.6.4.2, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-8 + +### R/4.0.3-foss-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.13, assertive-0.3-6, assertive.base-0.0-7, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5, awsMethods-1.1-1, b-a, backports-1.2.0, bacr-1.0.1, bartMachine-1.2.5.1, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.7.2, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, betareg-3.1-3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.5.3, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-12, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-25, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.0, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.2, bst-0.3-22, c-o, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.0, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.11, circular-0.4-93, class-7.3-17, classInt-0.4-3, cli-2.1.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.5, clusterRepro-0.9, clustree-0.4.3, clValid-0.6-9, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.3-1, colorspace-1.4-1, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-0, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-3, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.0, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.4, crayon-1.3.4, crosstalk-1.1.0.1, crul-1.0.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.13.2, data.tree-1.0.0, dbarts-0.9-18, DBI-1.1.0, dbplyr-2.0.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-2, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.1, desc-1.2.0, DescTools-0.99.38, deSolve-1.28, devtools-2.3.2, dfidx-0.0-3, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.2, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.1, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-0, downloader-0.4, dplyr-1.0.2, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.16, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-5, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-12, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-4.0.4, ffbase-0.13.1, fftw-1.0-6, fftwtools-0.9-9, fields-11.6, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.1-1, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.0, foreach-1.5.1, forecast-8.13, foreign-0.8-80, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-8, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.20.1, future.apply-1.6.0, g-r, g-r, g-r, gam-1.20, gamlss-5.2-0, gamlss.data-5.1-4, gamlss.dist-5.1-7, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-1, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-1.0.4, GGally-2.0.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.2, ggnetwork-0.5.8, ggplot2-3.3.2, ggpubr-0.4.0, ggraph-2.0.3, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.6, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.27.1, glasso-1.11, gld-2.6.2, gllvm-1.2.2, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.0-2, GlobalOptions-0.1.2, globals-0.13.1, glue-1.4.2, gmm-1.6-5, gmodels-2.18.1, gmp-0.6-1, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.0, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gtable-0.3.0, gtools-3.8.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.4-1, hms-0.5.3, htmlTable-2.1.0, htmltools-0.5.0, htmlwidgets-1.5.2, httpcode-0.3.0, httpuv-1.5.4, httr-1.4.2, huge-1.3.4.1, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.3, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.16, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.2, ISOcodes-2020.03.16, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jsonlite-1.7.1, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.30, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.4.2, labelled-2.7.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.4, lhs-1.1.1, libcoin-1.0-6, lifecycle-0.2.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-25, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.3.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.9, m-e, magic-1.5-9, magick-2.5.1, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.57.0, maxLik-1.4-4, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-3, mclust-5.4.6, mcmc-0.9-7, MCMCpack-1.4-9, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-33, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.11.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mitools-2.4, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.8, mlogit-1.1-1, mlr-2.18.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.3-26, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-14, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-150, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-14, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pan-1.6, parallelly-1.21.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-5, partykit-1.2-10, pastecs-1.3.21, patchwork-1.0.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.4-8.6, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.4.6, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-11, pkgbuild-1.1.0, pkgconfig-2.0.3, pkgload-1.1.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2.1, plotmo-3.6.0, plotrix-3.7-8, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.2, processx-3.4.4, prodlim-2019.11.13, profileModel-0.6.0, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.1.1, proto-1.0.0, proxy-0.4-24, pryr-0.1.4, ps-1.4.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.9, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.17, quantreg-5.75, questionr-0.7.3, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.3-13, rasterVis-0.49, rbibutils-1.4, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.5, RcppArmadillo-0.10.1.0.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.8, RcppParallel-5.0.2, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.0, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.14, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.54, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.16, ritis-0.9.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.8, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.5, rmeta-3.0, Rmpi-0.6-9, rms-6.0-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-6, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-1.3-2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.1, Rssa-1.0.2, rstan-2.21.2, rstantools-2.1.1, rstatix-0.6.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-0.3.6, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-3.0-0, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.1, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-0, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-4, servr-0.20, sessioninfo-1.1.1, setRNG-2013.9-1, sfsmisc-1.1-7, shape-1.4.5, shapefiles-0.7, shiny-1.5.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.1.2, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-4, spaa-0.2.2, spam-2.5-1, spaMM-3.5.0, SparseM-1.78, SPAtest-3.1.2, spatial-7.3-12, spatstat-1.64-1, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.5, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-6, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.0, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.1, tergm-3.7.0, testit-0.12, testthat-3.0.0, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.0.4, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.2, tidyselect-1.1.0, tidytext-0.2.6, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.8, tinytex-0.27, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.18, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-11, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-7, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-1.6.3, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-4, VIM-6.0.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.2, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.3.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.0.0, xfun-0.19, xgboost-1.4.1.1, xlsx-0.6.4.2, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-8 + +### R/4.0.0-foss-2020a + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-15, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-0, akima-0.6-2, AlgDesign-1.2.0, animation-2.6, aod-1.3.1, ape-5.3, argparse-2.0.1, arm-1.11-1, askpass-1.1, asnipe-1.1.12, assertive-0.3-6, assertive.base-0.0-7, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.4-3, awsMethods-1.1-1, b-a, backports-1.1.6, bacr-1.0.1, bartMachine-1.2.4.2, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.7.1, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.62, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, betareg-3.1-3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.2, BIGL-1.4.3, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-1.1-15.2, bit64-0.9-7, bitops-1.0-6, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.5, bold-0.9.0, boot-1.3-25, bootstrap-2019.6, Boruta-6.0.0, brew-1.0-6, brglm-0.6.2, bridgedist-0.1.0, bridgesampling-1.0-0, brms-2.12.0, Brobdingnag-1.2-6, broom-0.5.6, bst-0.3-17, c-o, Cairo-1.5-12, calibrate-1.7.5, callr-3.4.3, car-3.0-7, carData-3.0-3, caret-6.0-86, caTools-1.18.0, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-55, circlize-0.4.8, circular-0.4-93, class-7.3-17, classInt-0.4-3, cli-2.0.2, clipr-0.7.0, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.4, clusterRepro-0.9, clustree-0.4.2, clValid-0.6-6, cobs-1.3-4, coda-0.19-3, codetools-0.2-16, coin-1.3-1, colorspace-1.4-1, colourpicker-1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-1.40-5, copCAR-2.0-3, corpcor-1.6.9, corrplot-0.84, covr-3.5.0, CovSel-1.2.1, cowplot-1.0.0, coxed-0.3.3, coxme-2.2-16, crayon-1.3.4, crosstalk-1.1.0.1, crul-0.9.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.12.8, data.tree-1.0.0, dbarts-0.9-18, DBI-1.1.0, dbplyr-1.4.3, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.1-25, dendextend-1.13.4, DEoptimR-1.0-8, Deriv-4.0, desc-1.2.0, DescTools-0.99.38, deSolve-1.28, devtools-2.3.0, DHARMa-0.3.0, dHSIC-2.1, diagram-1.6.4, DiagrammeR-1.0.5, dichromat-2.0-0, digest-0.6.25, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.0-7, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, doMC-1.3.6, doParallel-1.0.15, doRNG-1.8.2, doSNOW-1.0.18, dotCall64-1.0-0, downloader-0.4, dplyr-0.8.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.13, dtangle-2.0.9, DTRreg-1.5, dtw-1.21-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-3, earth-5.1.2, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.1, ellipsis-0.3.0, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, ENMeval-0.3.0, entropy-1.2.1, EnvStats-2.3.1, ergm-3.10.4, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-4, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-11, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-2.2-14.2, ffbase-0.12.8, fftw-1.0-6, fftwtools-0.9-8, fields-10.3, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.0-14, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-15, fma-2.4, FME-1.3.6.1, FNN-1.1.3, forcats-0.5.0, foreach-1.5.0, forecast-8.12, foreign-0.8-79, formatR-1.7, Formula-1.2-3, fossil-0.4.0, fpc-2.2-5, fpp-0.5, fracdiff-1.5-1, fs-1.4.1, futile.logger-1.4.3, futile.options-1.0.1, future-1.17.0, future.apply-1.4.0, g-r, g-r, g-r, gam-1.16.1, gamlss-5.1-6, gamlss.data-5.1-4, gamlss.dist-5.1-6, gamlss.tr-5.1-0, gap-1.2.2, gapfill-0.9.6, gaussquad-1.0-2, gbm-2.1.5, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-1, gee-4.13-20, geepack-1.3-1, geiger-2.0.6.4, GeneNet-1.2.14, generics-0.0.2, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-0.1.8, GGally-1.5.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.1, ggnetwork-0.5.8, ggplot2-3.3.0, ggpubr-0.3.0, ggraph-2.0.2, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.5, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.26.1, glasso-1.11, gld-2.6.2, gllvm-1.2.1, glmmML-1.1.0, glmmTMB-1.0.1, glmnet-3.0-2, GlobalOptions-0.1.1, globals-0.12.5, glue-1.4.0, gmm-1.6-4, gmodels-2.18.1, gmp-0.5-13.6, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.1, gplots-3.0.3, graphlayouts-0.7.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.2.2, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gtable-0.3.0, gtools-3.8.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, h2o-3.30.0.1, hal9001-0.2.7, haven-2.2.0, hdf5r-1.3.2, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.4-0, hms-0.5.3, htmlTable-1.13.3, htmltools-0.4.0, htmlwidgets-1.5.1, httpcode-0.3.0, httpuv-1.5.2, httr-1.4.1, huge-1.3.4.1, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.5, imager-0.42.1, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.15, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.4.1, irlba-2.3.3, Iso-0.0-18, isoband-0.2.1, ISOcodes-2020.03.16, iterators-1.0.12, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.6-10, jpeg-0.1-8.1, jsonlite-1.6.1, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-17, klaR-0.6-15, knitr-1.28, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.3, labelled-2.3.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, later-1.0.0, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.7, lavaan-0.6-5, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.3, lhs-1.0.2, libcoin-1.0-5, lifecycle-0.2.0, limSolve-1.5.6, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-23, lmerTest-3.1-2, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-37, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.23, logspline-2.1.15, longitudinal-1.1.12, longmemo-1.1-2, loo-2.2.0, lpSolve-5.6.15, lqa-1.0-3, lsei-1.2-0, lubridate-1.7.8, m-e, magic-1.5-9, magick-2.3, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-0.9-9, markdown-1.1, MASS-7.3-51.6, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.56.0, maxLik-1.3-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-2, mclust-5.4.6, mcmc-0.9-7, MCMCpack-1.4-6, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-6, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, mgcv-1.8-31, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.8.0, MIIVsem-0.5.4, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.8-4, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mitools-2.4, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.7, mlogit-1.0-3.1, mlr-2.17.1, mltools-0.3.5, mnormt-1.5-6, ModelMetrics-1.2.2.2, modelr-0.1.6, modeltools-0.2-23, moments-0.14, mpath-0.3-25, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-13, multicool-0.1-11, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5, mvtnorm-1.1-0, natserv-0.4.0, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.0, networkDynamic-0.10.1, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-147, nloptr-1.2.2.1, NLP-0.2-0, nlsem-0.8, nnet-7.3-14, nnls-1.4, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.4-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.0, openssl-1.4.1, openxlsx-4.1.4, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pan-1.6, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-4, partykit-1.2-7, pastecs-1.3.21, patchwork-1.0.0, pbapply-1.4-2, pbivnorm-0.6.0, pbkrtest-0.4-8.6, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, pillar-1.4.3, pim-2.0.2, pinfsc50-1.1.0, pixmap-0.4-11, pkgbuild-1.0.7, pkgconfig-2.0.3, pkgload-1.0.2, pkgmaker-0.31.1, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2.1, plotmo-3.5.7, plotrix-3.7-8, pls-2.7-2, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.17, polyclip-1.10-0, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.2, processx-3.4.2, prodlim-2019.11.13, profileModel-0.6.0, proftools-0.99-3, progress-1.2.2, promises-1.1.0, proto-1.0.0, proxy-0.4-24, pryr-0.1.4, ps-1.3.2, pscl-1.5.5, pspline-1.0-18, psych-1.9.12.31, pulsar-0.3.6, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.17, quantreg-5.55, questionr-0.7.0, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.0, R.oo-1.23.0, R.rsp-0.43.2, R.utils-2.9.2, R6-2.4.1, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.1-5, rasterVis-0.47, Rborist-0.2-3, RCAL-2.0, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.4.6, RcppArmadillo-0.9.870.2.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.7, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-0.11-1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.3.1, readxl-1.3.1, recipes-0.1.10, RefFreeEWAS-2.2, registry-0.5-1, rematch-1.0.1, rematch2-2.1.1, remotes-2.1.1, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.15, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.54, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.16, ritis-0.9.0, RItools-0.1-17, rJava-0.9-12, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.5, rlecuyer-0.3-5, rmarkdown-2.1, rmeta-3.0, Rmpi-0.6-9, rms-5.1-4, RMTstat-0.3, rncl-0.8.4, RNeXML-2.4.3, rngtools-1.5, robustbase-0.93-6, ROCR-1.0-7, ROI-0.3-3, ROI.plugin.glpk-0.3-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.10, roxygen2-7.1.0, rpart-4.1-15, RPMM-1.25, rprojroot-1.3-2, rrcov-1.5-2, rredlist-0.6.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, RSQLite-2.2.0, Rssa-1.0.2, rstan-2.19.3, rstantools-2.0.0, rstatix-0.5.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.1, rvest-0.3.5, RWeka-0.4-42, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-2.5-1, scales-1.1.0, scatterplot3d-0.3-41, sctransform-0.2.1, SDMTools-1.1-221.2, seewave-2.1.5, segmented-1.1-0, selectr-0.4-2, sem-3.1-9, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-3.6-1, servr-0.16, sessioninfo-1.1.1, sfsmisc-1.1-6, shape-1.4.4, shapefiles-0.7, shiny-1.4.0.2, shinydashboard-0.7.1, shinyjs-1.1, shinystan-2.5.0, shinythemes-1.1.2, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.0, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.6-1, sna-2.5, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-1, spaa-0.2.2, spam-2.5-1, spaMM-3.2.0, SparseM-1.78, SPAtest-3.0.2, spatial-7.3-12, spatstat-1.63-3, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.5, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.2, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-1, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.34, statnet-2019.6, statnet.common-4.3.0, stdReg-3.4.0, stopwords-2.0, stringi-1.4.6, stringr-1.4.0, strucchange-1.5-2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.1-12, survivalROC-1.0.3, svd-0.5, sys-3.3, t-c, t-o, tableone-0.12.0, taxize-0.9.95, tcltk2-1.2-11, tclust-1.4-1, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.1, tergm-3.6.1, testit-0.11, testthat-2.3.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.0.1, tictoc-1.0, tidygraph-1.1.2, tidyr-1.0.2, tidyselect-1.0.0, tidytext-0.2.4, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.4, tinytex-0.22, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.16, tmle-1.4.0.1, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-11, TraMineR-2.2-0, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.23-6, tuneR-1.3.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-6, unmarked-1.0.1, urca-1.3-0, urltools-1.7.3, uroot-2.1-0, usethis-1.6.1, utf8-1.1.4, uuid-0.1-4, vcd-1.4-7, vcfR-1.10.0, vctrs-0.2.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-3, VIM-5.1.1, vioplot-0.3.4, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.9, VSURF-1.1.0, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.3.0, withr-2.2.0, wordcloud-2.6, worrms-0.4.0, WriteXLS-5.0.0, xfun-0.13, xlsx-0.6.3, xlsxjars-0.6.1, XML-3.99-0.3, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12-0, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.0.4, zoo-1.8-7 + +### R/3.6.3-foss-2020a + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-15, ADGofTest-0.3, aggregation-1.0.1, akima-0.6-2, AlgDesign-1.2.0, animation-2.6, aod-1.3.1, ape-5.3, argparse-2.0.1, arm-1.10-1, askpass-1.1, asnipe-1.1.12, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, b-a, backports-1.1.5, bacr-1.0.1, bartMachine-1.2.4.2, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.2, BDgraph-2.62, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, bit-1.1-15.2, bit64-0.9-7, bitops-1.0-6, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.5, bold-0.9.0, boot-1.3-24, bootstrap-2019.6, Boruta-6.0.0, brew-1.0-6, brglm-0.6.2, bridgedist-0.1.0, bridgesampling-1.0-0, Brobdingnag-1.2-6, broom-0.5.5, bst-0.3-17, c-o, Cairo-1.5-11, calibrate-1.7.5, callr-3.4.2, car-3.0-7, carData-3.0-3, caret-6.0-85, caTools-1.18.0, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-55, circlize-0.4.8, circular-0.4-93, class-7.3-15, classInt-0.4-2, cli-2.0.2, clipr-0.7.0, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.4, clusterRepro-0.9, clustree-0.4.2, clValid-0.6-6, cobs-1.3-4, coda-0.19-3, codetools-0.2-16, coin-1.3-1, colorspace-1.4-1, colourpicker-1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-1.40-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.0, CovSel-1.2.1, cowplot-1.0.0, crayon-1.3.4, crosstalk-1.1.0.1, crul-0.9.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.12.8, DBI-1.1.0, dbplyr-1.4.2, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.1-25, dendextend-1.13.4, DEoptimR-1.0-8, Deriv-4.0, desc-1.2.0, deSolve-1.28, devtools-2.2.2, DHARMa-0.2.7, dHSIC-2.1, diagram-1.6.4, DiagrammeR-1.0.5, dichromat-2.0-0, digest-0.6.25, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.0-6, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, doMC-1.3.6, doParallel-1.0.15, doRNG-1.8.2, doSNOW-1.0.18, dotCall64-1.0-0, downloader-0.4, dplyr-0.8.5, dr-3.0.10, DRR-0.0.4, DT-0.12, dtangle-2.0.9, DTRreg-1.5, dtw-1.21-3, dummies-1.5.6, dynamicTreeCut-1.63-1, e1071-1.7-3, EasyABC-1.5, ellipse-0.4.1, ellipsis-0.3.0, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, entropy-1.2.1, ergm-3.10.4, ergm.count-3.4.0, evaluate-0.14, expm-0.999-4, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-11, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-2.2-14.2, ffbase-0.12.8, fftw-1.0-6, fftwtools-0.9-8, fields-10.3, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.0-14, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-15, fma-2.4, FME-1.3.6.1, FNN-1.1.3, forcats-0.5.0, foreach-1.4.8, forecast-8.11, foreign-0.8-76, formatR-1.7, Formula-1.2-3, fossil-0.3.7, fpc-2.2-5, fpp-0.5, fracdiff-1.5-1, fs-1.3.2, futile.logger-1.4.3, futile.options-1.0.1, future-1.16.0, future.apply-1.4.0, g-r, g-r, g-r, gam-1.16.1, gamlss-5.1-6, gamlss.data-5.1-4, gamlss.dist-5.1-6, gamlss.tr-5.1-0, gap-1.2.2, gapfill-0.9.6, gbm-2.1.5, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-1, gee-4.13-20, geepack-1.3-1, geiger-2.0.6.4, GeneNet-1.2.14, generics-0.0.2, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-0.1.8, GGally-1.4.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.1, ggnetwork-0.5.8, ggplot2-3.3.0, ggpubr-0.3.0, ggraph-2.0.2, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.5, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.26.1, glasso-1.11, gllvm-1.2.1, glmmML-1.1.0, glmmTMB-1.0.1, glmnet-3.0-2, GlobalOptions-0.1.1, globals-0.12.5, glue-1.3.2, gmm-1.6-4, gmodels-2.18.1, gmp-0.5-13.6, goftest-1.2-2, gomms-1.0, gower-0.2.1, gplots-3.0.3, graphlayouts-0.6.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.2.2, GSA-1.03.1, gsalib-2.1, gsw-1.0-5, gtable-0.3.0, gtools-3.8.1, GUTS-1.1.1, h2o-3.28.0.4, haven-2.2.0, hdf5r-1.3.1, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.3-1, hms-0.5.3, htmlTable-1.13.3, htmltools-0.4.0, htmlwidgets-1.5.1, httpcode-0.2.0, httpuv-1.5.2, httr-1.4.1, huge-1.3.4, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, igraph-1.2.5, imager-0.42.1, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.15, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.3, irlba-2.3.3, Iso-0.0-18, isoband-0.2.0, ISOcodes-2020.03.16, iterators-1.0.12, itertools-0.1-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.6-10, jpeg-0.1-8.1, jsonlite-1.6.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-16, klaR-0.6-15, knitr-1.28, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.3, labelled-2.2.2, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, later-1.0.0, lattice-0.20-40, latticeExtra-0.6-29, lava-1.6.7, lavaan-0.6-5, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.3, lhs-1.0.1, libcoin-1.0-5, lifecycle-0.2.0, limSolve-1.5.6, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-21, lmerTest-3.1-1, Lmoments-1.3-1, lmtest-0.9-37, locfdr-1.1-8, locfit-1.5-9.1, logcondens-2.1.5, logistf-1.23, logspline-2.1.15, longitudinal-1.1.12, longmemo-1.1-2, loo-2.2.0, lpSolve-5.6.15, lqa-1.0-3, lsei-1.2-0, lubridate-1.7.4, m-e, magic-1.5-9, magick-2.3, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-0.9-9, markdown-1.1, MASS-7.3-51.5, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.56.0, maxLik-1.3-8, mboost-2.9-2, mclust-5.4.5, mcmc-0.9-6.1, MCMCpack-1.4-6, medflex-0.6-6, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, mgcv-1.8-31, mi-1.0, mice-3.8.0, MIIVsem-0.5.4, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.8-4, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.7, mlogit-1.0-3.1, mlr-2.17.0, mltools-0.3.5, mnormt-1.5-6, ModelMetrics-1.2.2.2, modelr-0.1.6, modeltools-0.2-23, moments-0.14, mpath-0.3-23, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-12, multicool-0.1-11, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5, mvtnorm-1.1-0, natserv-0.3.0, ncbit-2013.03.29, network-1.16.0, networkDynamic-0.10.1, neuRosim-0.2-12, nleqslv-3.3.2, nlme-3.1-145, nloptr-1.2.2.1, NLP-0.2-0, nnet-7.3-13, nnls-1.4, nor1mix-1.3-0, np-0.60-10, npsurv-0.4-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.0, openssl-1.4.1, openxlsx-4.1.4, optmatch-0.9-13, optparse-1.6.4, ordinal-2019.12-10, p-a, packrat-0.5.0, pan-1.6, parallelMap-1.4, ParamHelpers-1.13, parsedate-1.2.0, party-1.3-4, partykit-1.2-7, pastecs-1.3.21, patchwork-1.0.0, pbapply-1.4-2, pbivnorm-0.6.0, pbkrtest-0.4-8.6, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, pillar-1.4.3, pim-2.0.2, pinfsc50-1.1.0, pixmap-0.4-11, pkgbuild-1.0.6, pkgconfig-2.0.3, pkgload-1.0.2, pkgmaker-0.31.1, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2, plotrix-3.7-7, pls-2.7-2, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, polspline-1.1.17, polyclip-1.10-0, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.1, processx-3.4.2, prodlim-2019.11.13, profileModel-0.6.0, progress-1.2.2, promises-1.1.0, proto-1.0.0, proxy-0.4-23, pryr-0.1.4, ps-1.3.2, pscl-1.5.5, pspline-1.0-18, psych-1.9.12.31, pulsar-0.3.6, purrr-0.3.3, pvclust-2.2-0, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4-16, quantreg-5.54, questionr-0.7.0, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.0, R.oo-1.23.0, R.rsp-0.43.2, R.utils-2.9.2, R6-2.4.1, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.0-12, rasterVis-0.47, Rborist-0.2-3, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.4, RcppArmadillo-0.9.850.1.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.7, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.1, rda-1.0.2-2.1, Rdpack-0.11-1, readbitmap-0.1.5, readr-1.3.1, readxl-1.3.1, recipes-0.1.10, registry-0.5-1, rematch-1.0.1, rematch2-2.1.0, remotes-2.1.1, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.3, reticulate-1.14, rex-1.1.2, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.50, RInside-0.2.16, rio-0.5.16, ritis-0.8.0, RItools-0.1-17, rJava-0.9-11, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.5, rlecuyer-0.3-5, rmarkdown-2.1, rmeta-3.0, Rmpi-0.6-9, rms-5.1-4, RMTstat-0.3, rncl-0.8.4, RNeXML-2.4.3, rngtools-1.5, robustbase-0.93-5, ROCR-1.0-7, Rook-1.1-1, rootSolve-1.8.2, rotl-3.0.10, roxygen2-7.1.0, rpart-4.1-15, rprojroot-1.3-2, rrcov-1.5-2, rredlist-0.6.0, Rserve-1.7-3.1, RSNNS-0.4-12, RSQLite-2.2.0, Rssa-1.0.2, rstan-2.19.3, rstatix-0.5.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, rversions-2.0.1, rvest-0.3.5, RWeka-0.4-42, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-2.5-1, scales-1.1.0, scatterplot3d-0.3-41, sctransform-0.2.1, SDMTools-1.1-221.2, seewave-2.1.5, segmented-1.1-0, selectr-0.4-2, sem-3.1-9, sendmailR-1.2-1, seqinr-3.6-1, servr-0.16, sessioninfo-1.1.1, sfsmisc-1.1-5, shape-1.4.4, shapefiles-0.7, shiny-1.4.0.2, shinydashboard-0.7.1, shinyjs-1.1, shinythemes-1.1.2, signal-0.7-6, SignifReg-2.1, SimSeq-1.4.0, SKAT-2.0.0, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.5-5, sna-2.5, snow-0.4-3, SnowballC-0.6.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-1, spam-2.5-1, spaMM-3.1.27, SparseM-1.78, SPAtest-3.0.2, spatial-7.3-11, spatstat-1.63-3, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.3, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.2, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-1, startupmsg-0.9.6, statmod-1.4.34, statnet-2019.6, statnet.common-4.3.0, stopwords-1.0, stringi-1.4.6, stringr-1.4.0, strucchange-1.5-2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survival-3.1-11, survivalROC-1.0.3, svd-0.5, sys-3.3, t-c, t-o, taxize-0.9.92, tclust-1.4-1, TeachingDemos-2.10, tensor-1.5, tensorA-0.36.1, tergm-3.6.1, testthat-2.3.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-2.1.3, tictoc-1.0, tidygraph-1.1.2, tidyr-1.0.2, tidyselect-1.0.0, tidytext-0.2.3, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.4, tinytex-0.20, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.16, tmle-1.4.0.1, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-9, TraMineR-2.0-15, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.23-6, tuneR-1.3.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-6, urca-1.3-0, urltools-1.7.3, uroot-2.1-0, usethis-1.5.1, utf8-1.1.4, uuid-0.1-4, vcd-1.4-6, vcfR-1.10.0, vctrs-0.2.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-2, VIM-5.1.1, vioplot-0.3.4, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.9, VSURF-1.1.0, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.3.0, withr-2.1.2, worrms-0.4.0, WriteXLS-5.0.0, xfun-0.12, xlsx-0.6.3, xlsxjars-0.6.1, XML-3.99-0.3, xml2-1.2.5, xopen-1.0.0, xtable-1.8-4, xts-0.12-0, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.0.4, zoo-1.8-7 + +### R/3.6.2-foss-2019b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-13, ADGofTest-0.3, aggregation-1.0.1, akima-0.6-2, AlgDesign-1.2.0, animation-2.6, aod-1.3.1, ape-5.3, argparse-2.0.1, arm-1.10-1, askpass-1.1, asnipe-1.1.12, assertthat-0.2.1, AUC-0.3.0, audio-0.1-6, b-a, backports-1.1.5, bacr-1.0.1, bartMachine-1.2.4.2, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.20, BCEE-1.2, BDgraph-2.62, bdsmatrix-1.3-3, beanplot-1.2, beeswarm-0.2.3, BH-1.69.0-1, BiasedUrn-1.07, bibtex-0.4.2, bigmemory-4.5.33, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-0, biom-0.3.12, bit-1.1-14, bit64-0.9-7, bitops-1.0-6, blob-1.2.0, BMA-3.18.11, bmp-0.3, bnlearn-4.5, bold-0.9.0, boot-1.3-23, bootstrap-2019.6, Boruta-6.0.0, brew-1.0-6, brglm-0.6.2, bridgedist-0.1.0, bridgesampling-0.7-2, Brobdingnag-1.2-6, broom-0.5.3, bst-0.3-17, c-o, Cairo-1.5-10, calibrate-1.7.5, callr-3.4.0, car-3.0-5, carData-3.0-3, caret-6.0-84, caTools-1.17.1.3, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-1.9.4, chemometrics-1.4.2, chron-2.3-54, circlize-0.4.8, circular-0.4-93, class-7.3-15, classInt-0.4-2, cli-2.0.0, clipr-0.7.0, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.4, clusterRepro-0.9, clustree-0.4.1, clValid-0.6-6, cobs-1.3-3, coda-0.19-3, codetools-0.2-16, coin-1.3-1, colorspace-1.4-1, colourpicker-1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-1.40-3, corpcor-1.6.9, corrplot-0.84, covr-3.4.0, CovSel-1.2.1, cowplot-1.0.0, crayon-1.3.4, crosstalk-1.0.0, crul-0.9.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.12.8, DBI-1.1.0, dbplyr-1.4.2, ddalpha-1.3.10, deal-1.2-39, debugme-1.1.0, deldir-0.1-23, dendextend-1.13.2, DEoptimR-1.0-8, Deriv-4.0, desc-1.2.0, deSolve-1.25, devtools-2.2.1, DHARMa-0.2.6, dHSIC-2.1, diagram-1.6.4, DiagrammeR-1.0.1, dichromat-2.0-0, digest-0.6.23, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.0-6, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, doMC-1.3.6, doParallel-1.0.15, doRNG-1.7.1, doSNOW-1.0.18, dotCall64-1.0-0, downloader-0.4, dplyr-0.8.3, dr-3.0.10, DRR-0.0.3, DT-0.10, dtangle-2.0.9, DTRreg-1.5, dtw-1.21-3, dummies-1.5.6, dynamicTreeCut-1.63-1, e1071-1.7-3, EasyABC-1.5, ellipse-0.4.1, ellipsis-0.3.0, emdbook-1.3.11, emulator-1.2-20, energy-1.7-7, entropy-1.2.1, ergm-3.10.4, ergm.count-3.4.0, evaluate-0.14, expm-0.999-4, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-11, FactoMineR-2.0, fail-1.3, fansi-0.4.0, farver-2.0.1, fastcluster-1.1.25, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-2.2-14, ffbase-0.12.7, fftw-1.0-5, fftwtools-0.9-8, fields-10.0, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.0-14, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-15, fma-2.3, FME-1.3.5, FNN-1.1.3, forcats-0.4.0, foreach-1.4.7, forecast-8.10, foreign-0.8-72, formatR-1.7, Formula-1.2-3, fossil-0.3.7, fpc-2.2-3, fpp-0.5, fracdiff-1.5-0, fs-1.3.1, futile.logger-1.4.3, futile.options-1.0.1, future-1.15.1, future.apply-1.4.0, g-r, g-r, g-r, gam-1.16.1, gamlss-5.1-5, gamlss.data-5.1-4, gamlss.dist-5.1-5, gamlss.tr-5.1-0, gap-1.2.1, gapfill-0.9.6, gbm-2.1.5, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.2-2, gee-4.13-20, geepack-1.3-1, geiger-2.0.6.2, GeneNet-1.2.13, generics-0.0.2, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-0.1.7, GGally-1.4.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.1, ggm-2.3, ggnetwork-0.5.8, ggplot2-3.2.1, ggpubr-0.3.0, ggraph-2.0.0, ggrepel-0.8.1, ggridges-0.5.1, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.5, gh-1.0.1, GillespieSSA-0.6.1, git2r-0.26.1, glasso-1.11, gllvm-1.1.7, glmmML-1.1.0, glmmTMB-0.2.3, glmnet-3.0-2, GlobalOptions-0.1.1, globals-0.12.5, glue-1.3.1, gmm-1.6-4, gmodels-2.18.1, goftest-1.2-2, gomms-1.0, gower-0.2.1, gplots-3.0.1.1, graphlayouts-0.5.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.2-1, GSA-1.03.1, gsalib-2.1, gsw-1.0-5, gtable-0.3.0, gtools-3.8.1, GUTS-1.1.1, h2o-3.26.0.2, haven-2.2.0, hdf5r-1.3.0, hdm-0.3.1, heatmap3-1.1.6, hexbin-1.28.0, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.3-0, hms-0.5.2, htmlTable-1.13.3, htmltools-0.4.0, htmlwidgets-1.5.1, httpcode-0.2.0, httpuv-1.5.2, httr-1.4.1, huge-1.3.4, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.19, idr-1.2, igraph-1.2.4.2, imager-0.41.2, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.15, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.3, irlba-2.3.3, Iso-0.0-18, ISOcodes-2019.04.22, iterators-1.0.12, itertools-0.1-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.6-10, jpeg-0.1-8.1, jsonlite-1.6, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-16, klaR-0.6-14, knitr-1.26, KODAMA-1.5, kohonen-3.0.10, ks-1.11.6, labdsv-2.0-1, labeling-0.3, labelled-2.2.1, laeken-0.5.0, lambda.r-1.2.4, LaplacesDemon-16.1.1, lars-1.2, later-1.0.0, lattice-0.20-38, latticeExtra-0.6-28, lava-1.6.6, lavaan-0.6-5, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.0, LearnBayes-2.15.1, leiden-0.3.3, lhs-1.0.1, libcoin-1.0-5, lifecycle-0.1.0, limSolve-1.5.6, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-21, lmerTest-3.1-1, Lmoments-1.3-1, lmtest-0.9-37, locfdr-1.1-8, locfit-1.5-9.1, logcondens-2.1.5, logistf-1.23, logspline-2.1.15, longitudinal-1.1.12, longmemo-1.1-1, loo-2.2.0, lpSolve-5.6.13.3, lqa-1.0-3, lsei-1.2-0, lubridate-1.7.4, m-e, magic-1.5-9, magick-2.2, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.0, maps-3.3.0, maptools-0.9-9, markdown-1.1, MASS-7.3-51.4, Matching-4.9-6, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.55.0, maxLik-1.3-6, mboost-2.9-1, mclust-5.4.5, mcmc-0.9-6, MCMCpack-1.4-5, medflex-0.6-6, mediation-4.5.0, memoise-1.1.0, memuse-4.0-0, mgcv-1.8-31, mi-1.0, mice-3.7.0, MIIVsem-0.5.4, mime-0.7, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.8-4, 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pheatmap-1.0.12, phylobase-0.8.6, pillar-1.4.2, pim-2.0.1, pinfsc50-1.1.0, pixmap-0.4-11, pkgbuild-1.0.6, pkgconfig-2.0.3, pkgload-1.0.2, pkgmaker-0.27, plogr-0.2.0, plot3D-1.1.1, plot3Drgl-1.0.1, plotly-4.9.1, plotrix-3.7-7, pls-2.7-2, plyr-1.8.5, png-0.1-7, PoissonSeq-1.1.2, polspline-1.1.17, polyclip-1.10-0, polynom-1.4-0, prabclus-2.3-1, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.0.2, pROC-1.15.3, processx-3.4.1, prodlim-2019.11.13, profileModel-0.6.0, progress-1.2.2, promises-1.1.0, proto-1.0.0, proxy-0.4-23, pryr-0.1.4, ps-1.3.0, pscl-1.5.2, pspline-1.0-18, psych-1.8.12, pulsar-0.3.6, purrr-0.3.3, pvclust-2.2-0, qgraph-1.6.4, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4-15, quantreg-5.54, questionr-0.7.0, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.7.1, R.oo-1.23.0, R.rsp-0.43.2, R.utils-2.9.2, R6-2.4.1, randomForest-4.6-14, randomForestSRC-2.9.2, ranger-0.11.2, RANN-2.6.1, raster-3.0-7, rasterVis-0.47, Rborist-0.2-3, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.3, RcppArmadillo-0.9.800.3.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.7, RcppProgress-0.4.1, RcppRoll-0.3.0, RCurl-1.95-4.12, rda-1.0.2-2.1, Rdpack-0.11-1, readbitmap-0.1.5, readr-1.3.1, readxl-1.3.1, recipes-0.1.7, registry-0.5-1, rematch-1.0.1, rematch2-2.1.0, remotes-2.1.0, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.3, reticulate-1.13, rex-1.1.2, RGCCA-2.1.2, rgexf-0.15.3, rgl-0.100.30, RInside-0.2.15, rio-0.5.16, ritis-0.8.0, RItools-0.1-17, rJava-0.9-11, rjson-0.2.20, RJSONIO-1.3-1.3, rlang-0.4.2, rlecuyer-0.3-5, rmarkdown-2.0, rmeta-3.0, Rmpi-0.6-9, rms-5.1-4, RMTstat-0.3, rncl-0.8.3, RNeXML-2.4.0, rngtools-1.4, robustbase-0.93-5, ROCR-1.0-7, Rook-1.1-1, rootSolve-1.8.1, rotl-3.0.10, roxygen2-7.0.2, rpart-4.1-15, rprojroot-1.3-2, rrcov-1.4-9, rredlist-0.5.0, Rserve-1.7-3.1, RSNNS-0.4-12, RSQLite-2.1.4, Rssa-1.0, rstan-2.19.2, rstatix-0.5.0, rstudioapi-0.10, Rtsne-0.15, Rttf2pt1-1.3.7, RUnit-0.4.32, rversions-2.0.1, rvest-0.3.5, RWeka-0.4-41, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-2.5-1, scales-1.1.0, scatterplot3d-0.3-41, sctransform-0.2.1, SDMTools-1.1-221.2, seewave-2.1.5, segmented-1.1-0, selectr-0.4-2, sem-3.1-9, sendmailR-1.2-1, seqinr-3.6-1, sessioninfo-1.1.1, sfsmisc-1.1-4, shape-1.4.4, shapefiles-0.7, shiny-1.4.0, shinydashboard-0.7.1, shinyjs-1.1, shinythemes-1.1.2, signal-0.7-6, SignifReg-2.1, SimSeq-1.4.0, SKAT-1.3.2.1, slam-0.1-46, sm-2.2-5.6, smoother-1.1, sn-1.5-4, sna-2.5, snow-0.4-3, SnowballC-0.6.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.3-2, spam-2.5-1, spaMM-3.0.0, SparseM-1.78, spatial-7.3-11, spatstat-1.62-2, spatstat.data-1.4-0, spatstat.utils-1.15-0, spData-0.3.2, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2017.10-1, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-1, startupmsg-0.9.6, statmod-1.4.32, statnet-2019.6, statnet.common-4.3.0, stopwords-1.0, stringi-1.4.3, stringr-1.4.0, strucchange-1.5-2, subplex-1.5-4, SuperLearner-2.0-26, SuppDists-1.1-9.4, survival-3.1-8, survivalROC-1.0.3, svd-0.5, sys-3.3, t-c, t-o, taxize-0.9.91, tclust-1.4-1, TeachingDemos-2.10, tensor-1.5, tensorA-0.36.1, tergm-3.6.1, testthat-2.3.1, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.1, tibble-2.1.3, tictoc-1.0, tidygraph-1.1.2, tidyr-1.0.0, tidyselect-0.2.5, tidytext-0.2.2, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.4, tinytex-0.18, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.15, tmle-1.4.0.1, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-9, TraMineR-2.0-13, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-2.1, tripack-1.3-8, trust-0.1-7, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.0, tsne-0.1-3, TTR-0.23-6, tuneR-1.3.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-5, urca-1.3-0, urltools-1.7.3, uroot-2.1-0, usethis-1.5.1, utf8-1.1.4, uuid-0.1-2, vcd-1.4-4, vcfR-1.8.0, vctrs-0.2.0, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-2, VIM-4.8.0, vioplot-0.3.4, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.9, VSURF-1.1.0, waveslim-1.7.5.1, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.3.0, withr-2.1.2, worrms-0.4.0, WriteXLS-5.0.0, xfun-0.11, xlsx-0.6.1, xlsxjars-0.6.1, XML-3.98-1.20, xml2-1.2.2, xopen-1.0.0, xtable-1.8-4, xts-0.11-2, yaImpute-1.0-32, yaml-2.2.0, zeallot-0.1.0, zip-2.0.4, zoo-1.8-6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/R2jags.md b/mkdocs/docs/HPC/only/gent/available_software/detail/R2jags.md index ea822456a5d1..54a5fd7102d6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/R2jags.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/R2jags.md @@ -6,6 +6,10 @@ hide: R2jags ====== + +Providing wrapper functions to implement Bayesian analysis in JAGS. + +https://cran.r-project.org/web/packages/R2jags # Available modules @@ -17,7 +21,7 @@ To start using R2jags, load one of these modules using a `module load` command l module load R2jags/0.7-1-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RASPA2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RASPA2.md index 77cc54f8631d..be7a0d7b4348 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RASPA2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RASPA2.md @@ -6,6 +6,10 @@ hide: RASPA2 ====== + +RASPA is a software package for simulating adsorption and diffusion ofmolecules in flexible nanoporous materials. + +https://iraspa.org/raspa/ # Available modules @@ -17,7 +21,7 @@ To start using RASPA2, load one of these modules using a `module load` command l module load RASPA2/2.0.41-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML-NG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML-NG.md index 54123dad1d06..6361f15c5f9a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML-NG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML-NG.md @@ -6,6 +6,10 @@ hide: RAxML-NG ======== + +RAxML-NG is a phylogenetic tree inference tool whichuses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree. + +https://github.com/amkozlov/raxml-ng # Available modules @@ -17,7 +21,7 @@ To start using RAxML-NG, load one of these modules using a `module load` command module load RAxML-NG/1.2.0-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML.md index d387594ceb6e..35afb970ae9b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML.md @@ -6,6 +6,10 @@ hide: RAxML ===== + +RAxML search algorithm for maximum likelihood based inference of phylogenetic trees. + +https://github.com/stamatak/standard-RAxML # Available modules @@ -17,7 +21,7 @@ To start using RAxML, load one of these modules using a `module load` command li module load RAxML/8.2.12-iimpi-2021b-hybrid-avx2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RDFlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RDFlib.md index eb857c2df895..5684e28ad854 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RDFlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RDFlib.md @@ -6,6 +6,10 @@ hide: RDFlib ====== + +RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information. + +https://github.com/RDFLib/rdflib # Available modules @@ -17,10 +21,29 @@ To start using RDFlib, load one of these modules using a `module load` command l module load RDFlib/6.2.0-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |RDFlib/6.2.0-GCCcore-10.3.0|x|x|x|-|x|x| |RDFlib/5.0.0-GCCcore-10.2.0|-|x|x|-|x|x| |RDFlib/4.2.2-GCCcore-8.3.0|-|x|x|-|x|x| + + +### RDFlib/6.2.0-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +isodate-0.6.1, rdflib-6.2.0 + +### RDFlib/5.0.0-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +isodate-0.6.0, rdflib-5.0.0 + +### RDFlib/4.2.2-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +isodate-0.6.0, rdflib-4.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RDKit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RDKit.md index eddd6a28025b..1eb789eecd0f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RDKit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RDKit.md @@ -6,6 +6,10 @@ hide: RDKit ===== + +RDKit is a collection of cheminformatics and machine-learning software written in C++ and Python. + +https://www.rdkit.org # Available modules @@ -17,7 +21,7 @@ To start using RDKit, load one of these modules using a `module load` command li module load RDKit/2022.09.4-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RDP-Classifier.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RDP-Classifier.md index b9f665d8316e..21bb02f4cb7e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RDP-Classifier.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RDP-Classifier.md @@ -6,6 +6,10 @@ hide: RDP-Classifier ============== + +The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. + +http://sourceforge.net/projects/rdp-classifier # Available modules @@ -17,7 +21,7 @@ To start using RDP-Classifier, load one of these modules using a `module load` c module load RDP-Classifier/2.13-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RE2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RE2.md index 8edc543211cd..19f0b46e256f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RE2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RE2.md @@ -6,6 +6,10 @@ hide: RE2 === + +RE2 is a fast, safe, thread-friendly alternative to backtracking regularexpression engines like those used in PCRE, Perl, and Python. It is a C++library. + +https://github.com/google/re2 # Available modules @@ -17,7 +21,7 @@ To start using RE2, load one of these modules using a `module load` command like module load RE2/2023-08-01-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RLCard.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RLCard.md index 460d07d6b892..84309fc20b4f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RLCard.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RLCard.md @@ -6,6 +6,10 @@ hide: RLCard ====== + +RLCard is a toolkit for Reinforcement Learning (RL) in card games. + +https://www.rlcard.org # Available modules @@ -17,8 +21,15 @@ To start using RLCard, load one of these modules using a `module load` command l module load RLCard/1.0.9-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |RLCard/1.0.9-foss-2022a|x|x|x|-|x|x| + + +### RLCard/1.0.9-foss-2022a + +This is a list of extensions included in the module: + +rlcard-1.0.9, termcolor-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RMBlast.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RMBlast.md index c2c5b16cd0eb..3d7c8b2a4b4f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RMBlast.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RMBlast.md @@ -6,6 +6,10 @@ hide: RMBlast ======= + +RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program 'rmblastn' for use with RepeatMasker and RepeatModeler. + +https://www.repeatmasker.org/RMBlast.html # Available modules @@ -17,7 +21,7 @@ To start using RMBlast, load one of these modules using a `module load` command module load RMBlast/2.11.0-gompi-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RNA-Bloom.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RNA-Bloom.md index 6f23d53d21d7..b41728778d4b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RNA-Bloom.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RNA-Bloom.md @@ -6,6 +6,10 @@ hide: RNA-Bloom ========= + +RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. + +https://github.com/bcgsc/RNA-Bloom # Available modules @@ -17,7 +21,7 @@ To start using RNA-Bloom, load one of these modules using a `module load` comman module load RNA-Bloom/2.0.1-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ROOT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ROOT.md index 4996b2537ec8..c49595bf0eff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ROOT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ROOT.md @@ -6,6 +6,10 @@ hide: ROOT ==== + +The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way. + +https://root.cern.ch/drupal/ # Available modules @@ -17,7 +21,7 @@ To start using ROOT, load one of these modules using a `module load` command lik module load ROOT/6.26.06-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RSEM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RSEM.md index 376bd8b4b08b..cb48d5f8b1ca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RSEM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RSEM.md @@ -6,6 +6,10 @@ hide: RSEM ==== + +RNA-Seq by Expectation-Maximization + +https://deweylab.github.io/RSEM/ # Available modules @@ -17,7 +21,7 @@ To start using RSEM, load one of these modules using a `module load` command lik module load RSEM/1.3.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RSeQC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RSeQC.md index 648c6b997285..a11dc1f61e56 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RSeQC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RSeQC.md @@ -6,6 +6,10 @@ hide: RSeQC ===== + +RSeQC provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc. + +http://rseqc.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using RSeQC, load one of these modules using a `module load` command li module load RSeQC/4.0.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RStudio-Server.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RStudio-Server.md index d87c19eb3245..6e11fc0fb42a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RStudio-Server.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RStudio-Server.md @@ -6,6 +6,10 @@ hide: RStudio-Server ============== + +This is the RStudio Server version.RStudio is a set of integrated tools designed to help you be more productive with R.The server can be started with: rserver --server-daemonize=0 --www-port 8787 --rsession-which-r=$(which R) + +https://www.rstudio.com/ # Available modules @@ -17,7 +21,7 @@ To start using RStudio-Server, load one of these modules using a `module load` c module load RStudio-Server/2022.02.0-443-rhel-x86_64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RTG-Tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RTG-Tools.md index b9a184ca1580..f5e23f98ba5d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RTG-Tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RTG-Tools.md @@ -6,6 +6,10 @@ hide: RTG-Tools ========= + +RTG Tools contains utilities to easily manipulate and accurately compare multiple VCF files, as well as utilities for processing other common NGS data formats. + +https://www.realtimegenomics.com/products/rtg-tools # Available modules @@ -17,7 +21,7 @@ To start using RTG-Tools, load one of these modules using a `module load` comman module load RTG-Tools/3.12.1-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Racon.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Racon.md index fde0e6745d88..569f7ef738a1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Racon.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Racon.md @@ -6,6 +6,10 @@ hide: Racon ===== + +Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. + +https://github.com/lbcb-sci/racon # Available modules @@ -17,7 +21,7 @@ To start using Racon, load one of these modules using a `module load` command li module load Racon/1.5.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RagTag.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RagTag.md index 05e1b1cb40ee..41d90606b9f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RagTag.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RagTag.md @@ -6,6 +6,10 @@ hide: RagTag ====== + +RagTag is a collection of software tools for scaffolding andimproving modern genome assemblies. Tasks include: homology-based misassemblycorrection, homology-based assembly scaffolding and patching, and scaffoldmerging. RagTag also provides command line utilities for working with commongenome assembly file formats. + +https://github.com/malonge/RagTag # Available modules @@ -17,7 +21,7 @@ To start using RagTag, load one of these modules using a `module load` command l module load RagTag/2.0.1-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ragout.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ragout.md index 2bf27293a173..3d5a40450b6e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ragout.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ragout.md @@ -6,6 +6,10 @@ hide: Ragout ====== + +Ragout (Reference-Assisted Genome Ordering UTility) is a toolfor chromosome-level scaffolding using multiple references. Given initialassembly fragments (contigs/scaffolds) and one or multiple related references(complete or draft), it produces a chromosome-scale assembly (as a set ofscaffolds). + +https://github.com/fenderglass/Ragout # Available modules @@ -17,7 +21,7 @@ To start using Ragout, load one of these modules using a `module load` command l module load Ragout/2.3-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RapidJSON.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RapidJSON.md index 01592890d991..0aff7206a329 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RapidJSON.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RapidJSON.md @@ -6,6 +6,10 @@ hide: RapidJSON ========= + +A fast JSON parser/generator for C++ with both SAX/DOM style API + +https://rapidjson.org # Available modules @@ -17,7 +21,7 @@ To start using RapidJSON, load one of these modules using a `module load` comman module load RapidJSON/1.1.0-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Raven.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Raven.md index c56d09463e8a..0a8d599d7c60 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Raven.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Raven.md @@ -6,6 +6,10 @@ hide: Raven ===== + +Raven is a de novo genome assembler for long uncorrected reads. + +https://github.com/lbcb-sci/raven # Available modules @@ -17,8 +21,15 @@ To start using Raven, load one of these modules using a `module load` command li module load Raven/1.8.1-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Raven/1.8.1-GCC-11.2.0|x|x|x|x|x|x| + + +### Raven/1.8.1-GCC-11.2.0 + +This is a list of extensions included in the module: + +Raven-1.8.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ray-project.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ray-project.md index c2505f14927f..e33f612d762b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ray-project.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ray-project.md @@ -6,6 +6,10 @@ hide: Ray-project =========== + +Ray is a fast and simple framework for building and running distributed applications. + +https://docs.ray.io/en/latest/ # Available modules @@ -17,10 +21,29 @@ To start using Ray-project, load one of these modules using a `module load` comm module load Ray-project/1.13.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Ray-project/1.13.0-foss-2021b|x|x|x|-|x|x| |Ray-project/1.13.0-foss-2021a|x|x|x|-|x|x| |Ray-project/0.8.4-foss-2019b-Python-3.7.4|-|-|x|-|x|x| + + +### Ray-project/1.13.0-foss-2021b + +This is a list of extensions included in the module: + +aiosignal-1.2.0, frozenlist-1.3.0, grpcio-1.43.0, Ray-1.13.0 + +### Ray-project/1.13.0-foss-2021a + +This is a list of extensions included in the module: + +aiosignal-1.2.0, frozenlist-1.3.0, grpcio-1.43.0, Ray-1.13.0 + +### Ray-project/0.8.4-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +aiohttp-3.6.2, async-timeout-3.0.1, beautifulsoup4-4.9.0, click-7.1.1, colorama-0.4.3, filelock-3.0.12, google-2.0.3, grpcio-1.28.1, idna-ssl-1.1.0, importlib-metadata-1.6.0, jsonschema-3.2.0, lz4-3.0.2, msgpack-1.0.0, multidict-4.7.5, multidict-4.7.5, py-spy-0.3.3, pyrsistent-0.16.0, Ray-0.8.4, redis-3.4.1, soupsieve-2.0, typing-extensions-3.7.4.2, yarl-1.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ray.md index 110602c5a91c..afbbc6905144 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ray.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ray.md @@ -6,6 +6,10 @@ hide: Ray === + +Ray is a fast and simple framework for building and running distributed applications. + +https://docs.ray.io/en/latest/ # Available modules @@ -17,8 +21,15 @@ To start using Ray, load one of these modules using a `module load` command like module load Ray/0.8.4-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Ray/0.8.4-foss-2019b-Python-3.7.4|-|x|-|-|-|-| + + +### Ray/0.8.4-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +aiohttp-3.6.2, async-timeout-3.0.1, beautifulsoup4-4.9.0, click-7.1.1, colorama-0.4.3, filelock-3.0.12, google-2.0.3, grpcio-1.28.1, idna-ssl-1.1.0, importlib-metadata-1.6.0, jsonschema-3.2.0, lz4-3.0.2, msgpack-1.0.0, multidict-4.7.5, multidict-4.7.5, py-spy-0.3.3, pyrsistent-0.16.0, Ray-0.8.4, redis-3.4.1, soupsieve-2.0, typing-extensions-3.7.4.2, yarl-1.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ReFrame.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ReFrame.md index 0b416692f293..59c909f29f58 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ReFrame.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ReFrame.md @@ -6,6 +6,10 @@ hide: ReFrame ======= + +ReFrame is a framework for writing regression tests for HPC systems. + +https://github.com/reframe-hpc/reframe # Available modules @@ -17,7 +21,7 @@ To start using ReFrame, load one of these modules using a `module load` command module load ReFrame/4.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,34 @@ module load ReFrame/4.2.0 |ReFrame/3.11.1|-|x|x|-|x|x| |ReFrame/3.9.1|-|x|x|-|x|x| |ReFrame/3.5.2|-|x|x|-|x|x| + + +### ReFrame/4.2.0 + +This is a list of extensions included in the module: + +pip-21.3.1, reframe-4.2.0, wheel-0.37.1 + +### ReFrame/3.11.2 + +This is a list of extensions included in the module: + +pip-21.3.1, reframe-3.11.2, setuptools-59.6.0, wheel-0.37.1 + +### ReFrame/3.11.1 + +This is a list of extensions included in the module: + +pip-21.3.1, reframe-3.11.1, setuptools-58.5.3, wheel-0.37.1 + +### ReFrame/3.9.1 + +This is a list of extensions included in the module: + +pip-21.2.4, reframe-3.9.1, setuptools-57.4.0, wheel-0.37.0 + +### ReFrame/3.5.2 + +This is a list of extensions included in the module: + +pip-21.0.1, reframe-3.5.2, setuptools-53.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Redis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Redis.md index c94a8cdbb77e..561142e92e9b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Redis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Redis.md @@ -6,6 +6,10 @@ hide: Redis ===== + +Redis is an open source (BSD licensed), in-memory data structure store, used asa database, cache, and message broker. Redis provides data structures such asstrings, hashes, lists, sets, sorted sets with range queries, bitmaps,hyperloglogs, geospatial indexes, and streams. Redis has built-in replication,Lua scripting, LRU eviction, transactions, and different levels of on-diskpersistence, and provides high availability via Redis Sentinel and automaticpartitioning with Redis Cluster. + +https://redis.io # Available modules @@ -17,7 +21,7 @@ To start using Redis, load one of these modules using a `module load` command li module load Redis/7.0.8-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RegTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RegTools.md index f8e0871ff6a0..0246e8679c48 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RegTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RegTools.md @@ -6,6 +6,10 @@ hide: RegTools ======== + +RegTools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in aregulatory and splicing context. + +https://regtools.readthedocs.org # Available modules @@ -17,7 +21,7 @@ To start using RegTools, load one of these modules using a `module load` command module load RegTools/1.0.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RepeatMasker.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RepeatMasker.md index 33de73d617c2..7c522df41cb8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RepeatMasker.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RepeatMasker.md @@ -6,6 +6,10 @@ hide: RepeatMasker ============ + +RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. + +https://www.repeatmasker.org/ # Available modules @@ -17,7 +21,7 @@ To start using RepeatMasker, load one of these modules using a `module load` com module load RepeatMasker/4.1.2-p1-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ResistanceGA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ResistanceGA.md index 9f673b15dbb2..833e80365036 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ResistanceGA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ResistanceGA.md @@ -6,6 +6,10 @@ hide: ResistanceGA ============ + +An R package to optimize resistance surfaces using Genetic Algorithms. + +https://github.com/wpeterman/ResistanceGA # Available modules @@ -17,8 +21,15 @@ To start using ResistanceGA, load one of these modules using a `module load` com module load ResistanceGA/4.2-5-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |ResistanceGA/4.2-5-foss-2022a-R-4.2.1|x|x|x|-|x|x| + + +### ResistanceGA/4.2-5-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +GA-3.2.2, JuliaCall-0.17.5, MuMIn-1.47.1, ResistanceGA-4.2-5, spdep-1.2-7, XR-0.7.2, XRJulia-0.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RevBayes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RevBayes.md index b8099760e05e..941c39e36d23 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RevBayes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RevBayes.md @@ -6,6 +6,10 @@ hide: RevBayes ======== + +RevBayes provides an interactive environment for statistical computation in phylogenetics. It is primarily intended for modeling, simulation, and Bayesian inference in evolutionary biology, particularly phylogenetics. + +https://revbayes.github.io # Available modules @@ -17,7 +21,7 @@ To start using RevBayes, load one of these modules using a `module load` command module load RevBayes/1.2.1-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Rgurobi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Rgurobi.md index c300be1447ce..7891c509a051 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Rgurobi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Rgurobi.md @@ -6,6 +6,10 @@ hide: Rgurobi ======= + +Gurobi Optimizer 9.5 interface + +https://www.gurobi.com # Available modules @@ -17,7 +21,7 @@ To start using Rgurobi, load one of these modules using a `module load` command module load Rgurobi/9.5.0-foss-2021b-R-4.1.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RheoTool.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RheoTool.md index 5974df296d27..f5b76bfd7b3e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RheoTool.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RheoTool.md @@ -6,6 +6,10 @@ hide: RheoTool ======== + +RheoTool is an open-source toolbox based on OpenFOAM to simulate Generalized Newtonian Fluids (GNF)and viscoelastic fluids under pressure-driven and/or electrically-driven flows. + +https://github.com/fppimenta/rheoTool # Available modules @@ -17,7 +21,7 @@ To start using RheoTool, load one of these modules using a `module load` command module load RheoTool/5.0-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Rmath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Rmath.md index be488c3439d1..38e47f7f2bb7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Rmath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Rmath.md @@ -6,6 +6,10 @@ hide: Rmath ===== + +Rmath is the standalone version of the R math library. Rmath can be used in your own C/C++ routines. + +https://www.r-project.org/ # Available modules @@ -17,7 +21,7 @@ To start using Rmath, load one of these modules using a `module load` command li module load Rmath/4.3.2-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RnBeads.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RnBeads.md index d322dacbe081..2b194f81185d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RnBeads.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RnBeads.md @@ -6,6 +6,10 @@ hide: RnBeads ======= + +RnBeads is an R package for comprehensive analysis of DNA methylation data obtained with anyexperimental protocol that provides single-CpG resolution. + +https://rnbeads.org # Available modules @@ -17,8 +21,15 @@ To start using RnBeads, load one of these modules using a `module load` command module load RnBeads/2.6.0-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |RnBeads/2.6.0-foss-2020a-R-4.0.0|-|x|x|-|x|x| + + +### RnBeads/2.6.0-foss-2020a-R-4.0.0 + +This is a list of extensions included in the module: + +RnBeads-2.6.0, RnBeads.hg19-1.20.0, RnBeads.hg38-1.20.0, RnBeads.mm10-1.20.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Roary.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Roary.md index 471d297c9e60..6b6eea52c44d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Roary.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Roary.md @@ -6,6 +6,10 @@ hide: Roary ===== + +Rapid large-scale prokaryote pan genome analysis + +https://github.com/sanger-pathogens/Roary # Available modules @@ -17,7 +21,7 @@ To start using Roary, load one of these modules using a `module load` command li module load Roary/3.13.0-foss-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ruby.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ruby.md index eea423b25e4f..bcacdec0d034 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ruby.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ruby.md @@ -6,6 +6,10 @@ hide: Ruby ==== + +Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write. + +https://www.ruby-lang.org # Available modules @@ -17,9 +21,22 @@ To start using Ruby, load one of these modules using a `module load` command lik module load Ruby/3.0.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Ruby/3.0.1-GCCcore-11.2.0|x|x|x|x|x|x| |Ruby/3.0.1-GCCcore-10.3.0|x|x|x|-|x|x| + + +### Ruby/3.0.1-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +activesupport-5.2.6, addressable-2.8.0, arr-pm-0.0.11, backports-3.23.0, bundler-2.3.5, cabin-0.9.0, childprocess-4.1.0, clamp-1.3.2, concurrent-ruby-1.1.9, connection_pool-2.2.5, diff-lcs-1.5.0, ethon-0.15.0, faraday-1.0.0, faraday-net_http-2.0.1, faraday_middleware-1.2.0, ffi-1.15.5, gh-0.18.0, highline-2.0.3, i18n-1.8.11, json-2.6.1, launchy-2.5.0, minitest-5.15.0, multi_json-1.15.0, multipart-post-2.1.1, mustermann-1.1.1, net-http-persistent-2.9.4, net-http-pipeline-1.0.1, public_suffix-4.0.6, pusher-client-0.6.2, rack-2.2.3, rack-protection-2.1.0, rack-test-1.1.0, rspec-3.10.0, rspec-core-3.10.1, rspec-expectations-3.10.1, rspec-mocks-3.10.2, rspec-support-3.10.3, ruby2_keywords-0.0.5, sinatra-2.1.0, thread_safe-0.3.6, tilt-2.0.10, typhoeus-1.4.0, tzinfo-1.1.0, websocket-1.2.9, zeitwerk-2.5.3 + +### Ruby/3.0.1-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +activesupport-5.0.7.2, addressable-2.7.0, arr-pm-0.0.11, backports-3.21.0, bundler-2.2.21, cabin-0.9.0, childprocess-4.1.0, clamp-1.3.2, concurrent-ruby-1.1.9, connection_pool-2.2.5, diff-lcs-1.4.4, ethon-0.14.0, faraday-1.3.0, faraday-net_http-1.0.1, faraday_middleware-1.0.0, ffi-1.15.3, gh-0.18.0, highline-2.0.3, i18n-1.8.10, json-2.5.1, launchy-2.5.0, minitest-5.14.4, multi_json-1.15.0, multipart-post-2.1.1, mustermann-1.1.1, net-http-persistent-2.9.4, net-http-pipeline-1.0.1, public_suffix-4.0.6, pusher-client-0.6.2, rack-2.2.3, rack-protection-2.1.0, rack-test-1.1.0, rspec-3.10.0, rspec-core-3.10.1, rspec-expectations-3.10.1, rspec-mocks-3.10.2, rspec-support-3.10.2, ruby2_keywords-0.0.4, sinatra-2.1.0, thread_safe-0.3.6, tilt-2.0.10, typhoeus-1.4.0, tzinfo-1.1.0, websocket-1.2.9, zeitwerk-2.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md index 523eb92372f4..c83184f5eb82 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md @@ -6,6 +6,10 @@ hide: Rust ==== + +Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. + +https://www.rust-lang.org # Available modules @@ -17,7 +21,7 @@ To start using Rust, load one of these modules using a `module load` command lik module load Rust/1.75.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md index 05ef89d16d41..4c76d3b91e1e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md @@ -6,6 +6,10 @@ hide: SAMtools ======== + +SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. + +https://www.htslib.org/ # Available modules @@ -17,7 +21,7 @@ To start using SAMtools, load one of these modules using a `module load` command module load SAMtools/1.18-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SBCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SBCL.md index d007dcbc1dd0..d839aef6dc00 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SBCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SBCL.md @@ -6,6 +6,10 @@ hide: SBCL ==== + +Steel Bank Common Lisp (SBCL) is a high performance Common Lisp compiler. It isopen source / free software, with a permissive license. In addition to thecompiler and runtime system for ANSI Common Lisp, it provides an interactiveenvironment including a debugger, a statistical profiler, a code coverage tool,and many other extensions. + +http://sbcl.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using SBCL, load one of these modules using a `module load` command lik module load SBCL/2.2.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SCENIC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SCENIC.md index 300abd57db3e..eacb810f6953 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SCENIC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SCENIC.md @@ -6,6 +6,10 @@ hide: SCENIC ====== + +SCENIC Suite is a set of tools to study and decipher gene regulation. + +https://scenic.aertslab.org # Available modules @@ -17,7 +21,7 @@ To start using SCENIC, load one of these modules using a `module load` command l module load SCENIC/1.2.4-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SCGid.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SCGid.md index 586098434606..d2e20e095f5c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SCGid.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SCGid.md @@ -6,6 +6,10 @@ hide: SCGid ===== + +A consensus approach to contig filtering and genome prediction from single-cell sequencing libraries + +https://github.com/amsesk/SCGid # Available modules @@ -17,8 +21,15 @@ To start using SCGid, load one of these modules using a `module load` command li module load SCGid/0.9b0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SCGid/0.9b0-foss-2021b|x|x|x|-|x|x| + + +### SCGid/0.9b0-foss-2021b + +This is a list of extensions included in the module: + +ClaMS-CLI-31012020, ESOM-1.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SCOTCH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SCOTCH.md index 1aa59f6a6d34..ca431b8af1f3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SCOTCH.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SCOTCH.md @@ -6,6 +6,10 @@ hide: SCOTCH ====== + +Software package and libraries for sequential and parallel graph partitioning,static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning. + +https://gforge.inria.fr/projects/scotch/ # Available modules @@ -17,7 +21,7 @@ To start using SCOTCH, load one of these modules using a `module load` command l module load SCOTCH/7.0.3-gompi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SCons.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SCons.md index 440b261c018a..7548a8f81537 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SCons.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SCons.md @@ -6,6 +6,10 @@ hide: SCons ===== + +SCons is a software construction tool. + +https://www.scons.org/ # Available modules @@ -17,7 +21,7 @@ To start using SCons, load one of these modules using a `module load` command li module load SCons/4.5.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,16 @@ module load SCons/4.5.2-GCCcore-12.3.0 |SCons/4.1.0.post1-GCCcore-10.2.0|-|x|x|-|x|x| |SCons/3.1.2-GCCcore-9.3.0|-|x|x|-|x|x| |SCons/3.1.1-GCCcore-8.3.0|-|x|x|-|x|x| + + +### SCons/4.5.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +SCons-4.5.2 + +### SCons/4.4.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +SCons-4.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SCopeLoomR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SCopeLoomR.md index 4757a757a4be..38ac587e17a6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SCopeLoomR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SCopeLoomR.md @@ -6,6 +6,10 @@ hide: SCopeLoomR ========== + +An R package (compatible with SCope) to create generic .loom files and extend them with other datae.g.: SCENIC regulons, Seurat clusters and markers, ... + +https://github.com/aertslab/SCopeLoomR # Available modules @@ -17,8 +21,15 @@ To start using SCopeLoomR, load one of these modules using a `module load` comma module load SCopeLoomR/0.13.0-foss-2021b-R-4.1.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SCopeLoomR/0.13.0-foss-2021b-R-4.1.2|x|x|x|x|x|x| + + +### SCopeLoomR/0.13.0-foss-2021b-R-4.1.2 + +This is a list of extensions included in the module: + +rlist-0.4.6.2, SCopeLoomR-0.13.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SDL2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SDL2.md index f8e926529e8c..4930c85adf32 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SDL2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SDL2.md @@ -6,6 +6,10 @@ hide: SDL2 ==== + +SDL: Simple DirectMedia Layer, a cross-platform multimedia library + +https://www.libsdl.org/ # Available modules @@ -17,7 +21,7 @@ To start using SDL2, load one of these modules using a `module load` command lik module load SDL2/2.28.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SDSL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SDSL.md index c7e62a61d372..c793413a77f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SDSL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SDSL.md @@ -6,6 +6,10 @@ hide: SDSL ==== + +The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. + +https://github.com/simongog/sdsl-lite # Available modules @@ -17,7 +21,7 @@ To start using SDSL, load one of these modules using a `module load` command lik module load SDSL/2.1.1-20191211-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SEACells.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SEACells.md index c06f200e3b8d..5e51baa8a441 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SEACells.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SEACells.md @@ -6,6 +6,10 @@ hide: SEACells ======== + +SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data + +https://github.com/dpeerlab/SEACells # Available modules @@ -17,8 +21,15 @@ To start using SEACells, load one of these modules using a `module load` command module load SEACells/20230731-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SEACells/20230731-foss-2021a|x|x|x|x|x|x| + + +### SEACells/20230731-foss-2021a + +This is a list of extensions included in the module: + +fcsparser-0.2.3, ncls-0.0.67, palantir-1.2, PhenoGraph-1.5.7, progressbar2-4.2.0, pygam-0.8.0, pyranges-0.0.110, pyrle-0.0.33, python-utils-3.7.0, SEACells-20230731, sorted-nearest-0.0.32, typing-extensions-4.7.1, tzlocal-5.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SECAPR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SECAPR.md index 2fefd5af365d..eaf5ac6457b4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SECAPR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SECAPR.md @@ -6,6 +6,10 @@ hide: SECAPR ====== + +SECAPR is a bioinformatics pipeline for the rapid anduser-friendly processing of targeted enriched Illumina sequences, fromraw reads to alignments + +https://github.com/AntonelliLab/seqcap_processor # Available modules @@ -17,8 +21,15 @@ To start using SECAPR, load one of these modules using a `module load` command l module load SECAPR/1.1.15-foss-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SECAPR/1.1.15-foss-2019b-Python-2.7.16|-|x|x|-|x|x| + + +### SECAPR/1.1.15-foss-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +cogent-1.9, SECAPR-1.1.15 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SELFIES.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SELFIES.md index 917b1156f348..0184c076edfe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SELFIES.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SELFIES.md @@ -6,6 +6,10 @@ hide: SELFIES ======= + +Robust representation of semantically constrained graphs, in particular for molecules in chemistry + +https://github.com/aspuru-guzik-group/selfies # Available modules @@ -17,7 +21,7 @@ To start using SELFIES, load one of these modules using a `module load` command module load SELFIES/2.1.1-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SEPP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SEPP.md index 6a8df4a04b7b..3578536f831e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SEPP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SEPP.md @@ -6,6 +6,10 @@ hide: SEPP ==== + +SATe-enabled Phylogenetic Placement - addresses the problem of phylogeneticplacement of short reads into reference alignments and trees. + +https://github.com/smirarab/sepp # Available modules @@ -17,7 +21,7 @@ To start using SEPP, load one of these modules using a `module load` command lik module load SEPP/4.5.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SHAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SHAP.md index f7735edcbf3a..31fddefb6f33 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SHAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SHAP.md @@ -6,6 +6,10 @@ hide: SHAP ==== + +SHAP (SHapley Additive exPlanations) is a game theoretic approach to explain the output of any machine learning model. It connects optimal credit allocation with local explanations using the classic Shapley values from game theory and their related extensions. + +https://github.com/slundberg/shap # Available modules @@ -17,9 +21,22 @@ To start using SHAP, load one of these modules using a `module load` command lik module load SHAP/0.42.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SHAP/0.42.1-foss-2019b-Python-3.7.4|x|x|x|-|x|x| |SHAP/0.41.0-foss-2022a|x|x|x|x|x|x| + + +### SHAP/0.42.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cloudpickle-2.2.1, setuptools-67.8.0, SHAP-0.42.1, slicer-0.0.7 + +### SHAP/0.41.0-foss-2022a + +This is a list of extensions included in the module: + +cloudpickle-2.2.1, SHAP-0.41.0, slicer-0.0.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO++.md index d06b1d651b8d..65b18e15fbaf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO++.md @@ -6,6 +6,10 @@ hide: SISSO++ ======= + +C++ implementation of SISSO with built in Python bindings for an efficient python interface + +https://gitlab.com/sissopp_developers/sissopp # Available modules @@ -17,7 +21,7 @@ To start using SISSO++, load one of these modules using a `module load` command module load SISSO++/1.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO.md index 3bd57b8c82ae..76738980d589 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO.md @@ -6,6 +6,10 @@ hide: SISSO ===== + +A data-driven method combining symbolic regression and compressed sensing toward accurate & interpretable models. + +https://github.com/rouyang2017/SISSO # Available modules @@ -17,7 +21,7 @@ To start using SISSO, load one of these modules using a `module load` command li module load SISSO/3.1-20220324-iimpi-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SKESA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SKESA.md index 8c44262735a7..5e2579fa1aff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SKESA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SKESA.md @@ -6,6 +6,10 @@ hide: SKESA ===== + +SKESA is a de-novo sequence read assembler for cultured single isolate genomes based on DeBruijn graphs. + +https://github.com/ncbi/SKESA # Available modules @@ -17,7 +21,7 @@ To start using SKESA, load one of these modules using a `module load` command li module load SKESA/2.4.0-gompi-2021b_saute.1.3.0_1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SLATEC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SLATEC.md index 3174d7bd956e..af4924fcd84f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SLATEC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SLATEC.md @@ -6,6 +6,10 @@ hide: SLATEC ====== + +SLATEC Common Mathematical Library, a comprehensive software library containing over 1400 general purpose mathematical and statistical routines written in Fortran 77. + +https://www.netlib.org/slatec/ # Available modules @@ -17,7 +21,7 @@ To start using SLATEC, load one of these modules using a `module load` command l module load SLATEC/4.1-GCC-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SLEPc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SLEPc.md index 9ef421a4353c..1c39b023d961 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SLEPc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SLEPc.md @@ -6,6 +6,10 @@ hide: SLEPc ===== + +SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems. + +https://slepc.upv.es/ # Available modules @@ -17,7 +21,7 @@ To start using SLEPc, load one of these modules using a `module load` command li module load SLEPc/3.18.2-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SLiM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SLiM.md index 7db1a2be04eb..2beed30948c8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SLiM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SLiM.md @@ -6,6 +6,10 @@ hide: SLiM ==== + +SLiM is an evolutionary simulation framework that combines a powerful engine for population genetic simulations with the capability of modeling arbitrarily complex evolutionary scenarios. + +https://messerlab.org/slim # Available modules @@ -17,7 +21,7 @@ To start using SLiM, load one of these modules using a `module load` command lik module load SLiM/3.4-GCC-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SMAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SMAP.md index 06fdcdbd8344..ec65571e9670 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SMAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SMAP.md @@ -6,6 +6,10 @@ hide: SMAP ==== + +SMAP is an analysis tool for stack-based NGS read mapping + +https://ngs-smap.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using SMAP, load one of these modules using a `module load` command lik module load SMAP/4.6.5-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SMAP/4.6.5-foss-2022a|x|x|x|x|x|x| + + +### SMAP/4.6.5-foss-2022a + +This is a list of extensions included in the module: + +colorlog-6.7.0, cutadapt-4.1, dnaio-0.10.0, gffpandas-1.2.0, isal-1.1.0, ngs-smap-4.6.5, primer3-py-1.2.0, setuptools-67.6.1, smap-effect-prediction-0.1.2, smap-haplotype-window-1.8.1, xopen-1.7.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SMC++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SMC++.md index ccb1036bf332..807fc09def5a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SMC++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SMC++.md @@ -6,6 +6,10 @@ hide: SMC++ ===== + +SMC++ is a program for estimating the size history of populations from whole genome sequence data. + +https://github.com/popgenmethods/smcpp # Available modules @@ -17,8 +21,15 @@ To start using SMC++, load one of these modules using a `module load` command li module load SMC++/1.15.4-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SMC++/1.15.4-foss-2022a|x|x|x|-|x|x| + + +### SMC++/1.15.4-foss-2022a + +This is a list of extensions included in the module: + +SMC++-1.15.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SMV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SMV.md index 7cadd8d4ed9a..f5b85d7d2781 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SMV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SMV.md @@ -6,6 +6,10 @@ hide: SMV === + +Smokeview is a visualization program that displays output of FDS and CFAST simulations. + +https://github.com/firemodels/smv # Available modules @@ -17,7 +21,7 @@ To start using SMV, load one of these modules using a `module load` command like module load SMV/6.7.17-iccifort-2020.4.304 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA-python.md index d5b1510b7321..39a7def68ca7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA-python.md @@ -6,6 +6,10 @@ hide: SNAP-ESA-python =============== + +Python interface to the Sentinel Application Platform (SNAP) API + +https://step.esa.int/main/toolboxes/snap/ # Available modules @@ -17,7 +21,7 @@ To start using SNAP-ESA-python, load one of these modules using a `module load` module load SNAP-ESA-python/9.0.0-GCCcore-11.2.0-Java-11-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA.md index d6909e787b0c..1b55f522b163 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA.md @@ -6,6 +6,10 @@ hide: SNAP-ESA ======== + +The Sentinel Application Platform (SNAP) is a common architecture for allSentinel Toolboxes being jointly developed by Brockmann Consult, SkyWatch andC-S.The SNAP architecture is ideal for Earth Observation processing and analysisdue to the following technological innovations: Extensibility, Portability,Modular Rich Client Platform, Generic EO Data Abstraction, Tiled MemoryManagement, and a Graph Processing Framework. + +https://step.esa.int/main/toolboxes/snap/ # Available modules @@ -17,7 +21,7 @@ To start using SNAP-ESA, load one of these modules using a `module load` command module load SNAP-ESA/9.0.0-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP.md index 9eb77a716f14..090257599a14 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP.md @@ -6,6 +6,10 @@ hide: SNAP ==== + +Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data + +https://www.microsoft.com/en-us/research/project/snap # Available modules @@ -17,7 +21,7 @@ To start using SNAP, load one of these modules using a `module load` command lik module load SNAP/2.0.1-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SOAPdenovo-Trans.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SOAPdenovo-Trans.md index 62d15b5c9e15..8aacfea61ba4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SOAPdenovo-Trans.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SOAPdenovo-Trans.md @@ -6,6 +6,10 @@ hide: SOAPdenovo-Trans ================ + +SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework,adapt to alternative splicing and different expression level among transcripts. + +http://soap.genomics.org.cn/SOAPdenovo-Trans.html # Available modules @@ -17,7 +21,7 @@ To start using SOAPdenovo-Trans, load one of these modules using a `module load` module load SOAPdenovo-Trans/1.0.5-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SPAdes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SPAdes.md index 3e281792fe9c..8b58cccb89fe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SPAdes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SPAdes.md @@ -6,6 +6,10 @@ hide: SPAdes ====== + +Genome assembler for single-cell and isolates data sets + +https://cab.spbu.ru/software/spades/ # Available modules @@ -17,7 +21,7 @@ To start using SPAdes, load one of these modules using a `module load` command l module load SPAdes/3.15.5-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SPM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SPM.md index d0f49860b8c1..9daa1b50da34 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SPM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SPM.md @@ -6,6 +6,10 @@ hide: SPM === + +SPM (Statistical Parametric Mapping) refers to the construction and assessment of spatially extended statistical processes used to test hypo- theses about functional imaging data. These ideas have been instantiated in software that is called SPM. The SPM software package has been designed for the analysis of brain imaging data sequences. The sequences can be a series of images from different cohorts, or time-series from the same subject. The current release is designed for the analysis of fMRI, PET, SPECT, EEG and MEG. + +https://www.fil.ion.ucl.ac.uk/spm # Available modules @@ -17,7 +21,7 @@ To start using SPM, load one of these modules using a `module load` command like module load SPM/12.5_r7771-MATLAB-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SPOTPY.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SPOTPY.md index 21d8b1ddf49f..783b76bc497c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SPOTPY.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SPOTPY.md @@ -6,6 +6,10 @@ hide: SPOTPY ====== + +SPOTPY is a Python framework that enables the use of Computational optimization techniques forcalibration, uncertainty and sensitivity analysis techniques of almost every (environmental-) model. + +https://spotpy.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using SPOTPY, load one of these modules using a `module load` command l module load SPOTPY/1.5.14-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SQLite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SQLite.md index f540450c5fbe..6a0e365f3c50 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SQLite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SQLite.md @@ -6,6 +6,10 @@ hide: SQLite ====== + +SQLite: SQL Database Engine in a C Library + +https://www.sqlite.org/ # Available modules @@ -17,7 +21,7 @@ To start using SQLite, load one of these modules using a `module load` command l module load SQLite/3.43.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SRA-Toolkit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SRA-Toolkit.md index fbe34e981ec9..1482ddb28568 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SRA-Toolkit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SRA-Toolkit.md @@ -6,6 +6,10 @@ hide: SRA-Toolkit =========== + +The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format + +https://github.com/ncbi/sra-tools # Available modules @@ -17,7 +21,7 @@ To start using SRA-Toolkit, load one of these modules using a `module load` comm module load SRA-Toolkit/3.0.3-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SRPRISM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SRPRISM.md index a5212309bcf3..322745f4376d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SRPRISM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SRPRISM.md @@ -6,6 +6,10 @@ hide: SRPRISM ======= + +Single Read Paired Read Indel Substitution Minimizer + +https://github.com/ncbi/SRPRISM # Available modules @@ -17,7 +21,7 @@ To start using SRPRISM, load one of these modules using a `module load` command module load SRPRISM/3.1.2-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SRST2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SRST2.md index 25b16477e749..04fc9b0f1376 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SRST2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SRST2.md @@ -6,6 +6,10 @@ hide: SRST2 ===== + +Short Read Sequence Typing for Bacterial Pathogens + +https://katholt.github.io/srst2 # Available modules @@ -17,7 +21,7 @@ To start using SRST2, load one of these modules using a `module load` command li module load SRST2/0.2.0-20210620-foss-2020b-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SSPACE_Basic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SSPACE_Basic.md index 4fd8e819c139..0e143db5a0c7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SSPACE_Basic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SSPACE_Basic.md @@ -6,6 +6,10 @@ hide: SSPACE_Basic ============ + +SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension + +https://github.com/nsoranzo/sspace_basic # Available modules @@ -17,7 +21,7 @@ To start using SSPACE_Basic, load one of these modules using a `module load` com module load SSPACE_Basic/2.1.1-GCC-10.2.0-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SSW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SSW.md index 30287085e6b0..149471b384f1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SSW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SSW.md @@ -6,6 +6,10 @@ hide: SSW === + +SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. We also provide a software that can do protein and genome alignment directly. Current version of our implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically. + +https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library # Available modules @@ -17,7 +21,7 @@ To start using SSW, load one of these modules using a `module load` command like module load SSW/1.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/STACEY.md b/mkdocs/docs/HPC/only/gent/available_software/detail/STACEY.md index 7e2c6ad3ddf6..6142ba931757 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/STACEY.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/STACEY.md @@ -6,6 +6,10 @@ hide: STACEY ====== + +The BEAST2 package STACEY can be used for species delimitation and species tree estimation,based on the multispecies coalescent model. + +http://www.indriid.com/software.html # Available modules @@ -17,7 +21,7 @@ To start using STACEY, load one of these modules using a `module load` command l module load STACEY/1.2.5-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/STAR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/STAR.md index d996dad03a69..d33c7b03b5d8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/STAR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/STAR.md @@ -6,6 +6,10 @@ hide: STAR ==== + +STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays. + +https://github.com/alexdobin/STAR # Available modules @@ -17,7 +21,7 @@ To start using STAR, load one of these modules using a `module load` command lik module load STAR/2.7.11a-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/STREAM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/STREAM.md index a4530ab7dc8b..1abfbd14f8c5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/STREAM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/STREAM.md @@ -6,6 +6,10 @@ hide: STREAM ====== + +The STREAM benchmark is a simple synthetic benchmark program that measures sustainable memory bandwidth (in MB/s) and the corresponding computation rate for simple vector kernels. + +https://www.cs.virginia.edu/stream/ # Available modules @@ -17,7 +21,7 @@ To start using STREAM, load one of these modules using a `module load` command l module load STREAM/5.10-GCC-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/STRique.md b/mkdocs/docs/HPC/only/gent/available_software/detail/STRique.md index 89f530b7e24b..a73055307c07 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/STRique.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/STRique.md @@ -6,6 +6,10 @@ hide: STRique ======= + +STRique is a python package to analyze repeat expansion andmethylation states of short tandem repeats (STR) in Oxford Nanopore Technology(ONT) long read sequencing data. + +https://github.com/giesselmann/STRique # Available modules @@ -17,8 +21,15 @@ To start using STRique, load one of these modules using a `module load` command module load STRique/0.4.2-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |STRique/0.4.2-foss-2021b|x|x|x|-|x|x| + + +### STRique/0.4.2-foss-2021b + +This is a list of extensions included in the module: + +ont-fast5-api-4.0.0, pomegranate-0.10.0, progressbar33-2.4, STRique-0.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SUNDIALS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SUNDIALS.md index 652abbe39c9e..4ca5647563ac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SUNDIALS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SUNDIALS.md @@ -6,6 +6,10 @@ hide: SUNDIALS ======== + +SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers + +https://computation.llnl.gov/projects/sundials # Available modules @@ -17,7 +21,7 @@ To start using SUNDIALS, load one of these modules using a `module load` command module load SUNDIALS/6.6.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SUPPA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SUPPA.md index 18536ae0789b..398f6a8baf88 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SUPPA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SUPPA.md @@ -6,6 +6,10 @@ hide: SUPPA ===== + +Fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions. + +https://github.com/comprna/SUPPA # Available modules @@ -17,7 +21,7 @@ To start using SUPPA, load one of these modules using a `module load` command li module load SUPPA/2.3-20231005-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SVIM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SVIM.md index edc32eafd33c..031156aa1166 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SVIM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SVIM.md @@ -6,6 +6,10 @@ hide: SVIM ==== + +SVIM (pronounced swim) is a structural variant caller for third-generation sequencing reads. It is able to detect and classify the following six classes of structural variation: deletions, insertions, inversions, tandem duplications, interspersed duplications and translocations. + +https://github.com/eldariont/svim # Available modules @@ -17,8 +21,15 @@ To start using SVIM, load one of these modules using a `module load` command lik module load SVIM/2.0.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SVIM/2.0.0-foss-2022a|x|x|x|x|x|x| + + +### SVIM/2.0.0-foss-2022a + +This is a list of extensions included in the module: + +SVIM-2.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SWIG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SWIG.md index ac5363540050..644edc09d9fc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SWIG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SWIG.md @@ -6,6 +6,10 @@ hide: SWIG ==== + +SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages. + +http://www.swig.org/ # Available modules @@ -17,7 +21,7 @@ To start using SWIG, load one of these modules using a `module load` command lik module load SWIG/4.1.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sabre.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sabre.md index 829a4aeb6c99..a221c4252f98 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sabre.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sabre.md @@ -6,6 +6,10 @@ hide: Sabre ===== + +Sabre is a tool that will demultiplex barcoded reads into separate files. It will work on both single-end and paired-end data in fastq format. It simply compares the provided barcodes with each read and separates the read into its appropriate barcode file, after stripping the barcode from the read (and also stripping the quality values of the barcode bases). + +https://github.com/najoshi/sabre # Available modules @@ -17,7 +21,7 @@ To start using Sabre, load one of these modules using a `module load` command li module load Sabre/2013-09-28-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sailfish.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sailfish.md index 80e242a6688e..c9be90347c89 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sailfish.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sailfish.md @@ -6,6 +6,10 @@ hide: Sailfish ======== + +Sailfish is a software tool that implements a novel, alignment-free algorithm for the estimation of isoform abundances directly from a set of reference sequences and RNA-seq reads. + +http://www.cs.cmu.edu/~ckingsf/software/sailfish/ # Available modules @@ -17,7 +21,7 @@ To start using Sailfish, load one of these modules using a `module load` command module load Sailfish/0.10.1-gompi-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Salmon.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Salmon.md index 2e089d47a398..73d6d423236c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Salmon.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Salmon.md @@ -6,6 +6,10 @@ hide: Salmon ====== + +Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. + +https://github.com/COMBINE-lab/salmon # Available modules @@ -17,7 +21,7 @@ To start using Salmon, load one of these modules using a `module load` command l module load Salmon/1.9.0-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sambamba.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sambamba.md index 7594a1f536a8..16eee49b5947 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sambamba.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sambamba.md @@ -6,6 +6,10 @@ hide: Sambamba ======== + +Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files. Current functionality is an important subset of samtools functionality, including view, index, sort, markdup, and depth. + +https://lomereiter.github.io/sambamba/ # Available modules @@ -17,7 +21,7 @@ To start using Sambamba, load one of these modules using a `module load` command module load Sambamba/1.0.1-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Satsuma2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Satsuma2.md index a562d7b5f0dc..4144e29ee432 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Satsuma2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Satsuma2.md @@ -6,6 +6,10 @@ hide: Satsuma2 ======== + +Satsuma2 is an optimised version of Satsuma, a tool to reliably align large and complex DNA sequencesproviding maximum sensitivity (to find all there is to find), specificity (to only find real homology) and speed (toaccommodate the billions of base pairs in vertebrate genomes). + +https://github.com/bioinfologics/satsuma2 # Available modules @@ -17,7 +21,7 @@ To start using Satsuma2, load one of these modules using a `module load` command module load Satsuma2/20220304-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ScaFaCoS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ScaFaCoS.md index d727278c35d0..32e2b75c3f63 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ScaFaCoS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ScaFaCoS.md @@ -6,6 +6,10 @@ hide: ScaFaCoS ======== + +ScaFaCoS is a library of scalable fast coulomb solvers. + +http://www.scafacos.de/ # Available modules @@ -17,7 +21,7 @@ To start using ScaFaCoS, load one of these modules using a `module load` command module load ScaFaCoS/1.0.1-intel-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ScaLAPACK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ScaLAPACK.md index e6c3dfb780be..54a641b80821 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ScaLAPACK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ScaLAPACK.md @@ -6,6 +6,10 @@ hide: ScaLAPACK ========= + +The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. + +https://www.netlib.org/scalapack/ # Available modules @@ -17,7 +21,7 @@ To start using ScaLAPACK, load one of these modules using a `module load` comman module load ScaLAPACK/2.2.0-gompi-2023b-fb ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SciPy-bundle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SciPy-bundle.md index 02045c7bb03e..c03b6a42616a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SciPy-bundle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SciPy-bundle.md @@ -6,6 +6,10 @@ hide: SciPy-bundle ============ + +Bundle of Python packages for scientific software + +https://python.org/ # Available modules @@ -17,7 +21,7 @@ To start using SciPy-bundle, load one of these modules using a `module load` com module load SciPy-bundle/2023.11-gfbf-2023b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -46,3 +50,154 @@ module load SciPy-bundle/2023.11-gfbf-2023b |SciPy-bundle/2019.10-intel-2019b-Python-2.7.16|-|x|x|-|x|x| |SciPy-bundle/2019.10-foss-2019b-Python-3.7.4|x|x|x|-|x|x| |SciPy-bundle/2019.10-foss-2019b-Python-2.7.16|-|x|x|-|x|x| + + +### SciPy-bundle/2023.11-gfbf-2023b + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.7, deap-1.4.1, gast-0.5.4, mpmath-1.3.0, numexpr-2.8.7, numpy-1.26.2, pandas-2.1.3, ply-3.11, pythran-0.14.0, scipy-1.11.4, tzdata-2023.3, versioneer-0.29 + +### SciPy-bundle/2023.07-gfbf-2023a + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.7, deap-1.4.0, gast-0.5.4, mpmath-1.3.0, numexpr-2.8.4, numpy-1.25.1, pandas-2.0.3, ply-3.11, pythran-0.13.1, scipy-1.11.1, tzdata-2023.3, versioneer-0.29 + +### SciPy-bundle/2023.02-gfbf-2022b + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.5, deap-1.3.3, gast-0.5.3, mpmath-1.2.1, numexpr-2.8.4, numpy-1.24.2, pandas-1.5.3, ply-3.11, pythran-0.12.1, scipy-1.10.1 + +### SciPy-bundle/2022.05-intel-2022a + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.4, deap-1.3.3, gast-0.5.3, mpi4py-3.1.3, mpmath-1.2.1, numexpr-2.8.1, numpy-1.22.3, pandas-1.4.2, ply-3.11, pythran-0.11.0, scipy-1.8.1 + +### SciPy-bundle/2022.05-foss-2022a + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.4, deap-1.3.1, gast-0.5.3, mpi4py-3.1.3, mpmath-1.2.1, numexpr-2.8.1, numpy-1.22.3, pandas-1.4.2, ply-3.11, pythran-0.11.0, scipy-1.8.1 + +### SciPy-bundle/2021.10-intel-2021b + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.2, deap-1.3.1, gast-0.5.2, mpi4py-3.1.1, mpmath-1.2.1, numexpr-2.7.3, numpy-1.21.3, pandas-1.3.4, ply-3.11, pythran-0.10.0, scipy-1.7.1 + +### SciPy-bundle/2021.10-foss-2021b-Python-2.7.18 + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.2, deap-1.3.1, gast-0.5.2, mpi4py-3.1.1, mpmath-1.2.1, numexpr-2.7.3, numpy-1.16.6, pandas-0.24.2, ply-3.11, scipy-1.2.3 + +### SciPy-bundle/2021.10-foss-2021b + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.2, deap-1.3.1, gast-0.5.2, mpi4py-3.1.1, mpmath-1.2.1, numexpr-2.7.3, numpy-1.21.3, pandas-1.3.4, ply-3.11, pythran-0.10.0, scipy-1.7.1 + +### SciPy-bundle/2021.05-intel-2021a + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.2.1, numexpr-2.7.3, numpy-1.20.3, pandas-1.2.4, scipy-1.6.3 + +### SciPy-bundle/2021.05-gomkl-2021a + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.2.1, numexpr-2.7.3, numpy-1.20.3, pandas-1.2.4, scipy-1.6.3 + +### SciPy-bundle/2021.05-foss-2021a + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.2.1, numexpr-2.7.3, numpy-1.20.3, pandas-1.2.4, scipy-1.6.3 + +### SciPy-bundle/2020.11-intelcuda-2020b + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4 + +### SciPy-bundle/2020.11-intel-2020b + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4 + +### SciPy-bundle/2020.11-fosscuda-2020b + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4 + +### SciPy-bundle/2020.11-foss-2020b-Python-2.7.18 + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.3, numpy-1.16.6, pandas-0.24.2, scipy-1.2.3 + +### SciPy-bundle/2020.11-foss-2020b + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4 + +### SciPy-bundle/2020.03-iomkl-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.18.3, pandas-1.0.3, scipy-1.4.1 + +### SciPy-bundle/2020.03-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.18.3, pandas-1.0.3, scipy-1.4.1 + +### SciPy-bundle/2020.03-intel-2020a-Python-2.7.18 + +This is a list of extensions included in the module: + +deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.16.6, pandas-0.24.2, scipy-1.2.3 + +### SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.18.3, pandas-1.0.3, scipy-1.4.1 + +### SciPy-bundle/2020.03-foss-2020a-Python-2.7.18 + +This is a list of extensions included in the module: + +deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.16.6, pandas-0.24.2, scipy-1.2.3 + +### SciPy-bundle/2019.10-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mpi4py-3.0.2, mpmath-1.1.0, numpy-1.17.3, pandas-0.25.3, scipy-1.3.1 + +### SciPy-bundle/2019.10-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +mpi4py-3.0.2, mpmath-1.1.0, numpy-1.16.5, pandas-0.24.2, scipy-1.2.2 + +### SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mpi4py-3.0.2, mpmath-1.1.0, numpy-1.17.3, pandas-0.25.3, scipy-1.3.1 + +### SciPy-bundle/2019.10-foss-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +mpi4py-3.0.2, mpmath-1.1.0, numpy-1.16.5, pandas-0.24.2, scipy-1.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Seaborn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Seaborn.md index a1157459fdd7..3607e4830c4c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Seaborn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Seaborn.md @@ -6,6 +6,10 @@ hide: Seaborn ======= + +Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics. + +https://seaborn.pydata.org/ # Available modules @@ -17,7 +21,7 @@ To start using Seaborn, load one of these modules using a `module load` command module load Seaborn/0.13.2-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SemiBin.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SemiBin.md index 6dab41b62ac9..c0dc65a2c6b3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SemiBin.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SemiBin.md @@ -6,6 +6,10 @@ hide: SemiBin ======= + +SemiBin: Metagenomic Binning Using Siamese Neural Networks for short and long reads + +https://semibin.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using SemiBin, load one of these modules using a `module load` command module load SemiBin/2.0.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SemiBin/2.0.2-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| |SemiBin/2.0.2-foss-2022a|x|x|x|x|x|x| + + +### SemiBin/2.0.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +SemiBin-2.0.2 + +### SemiBin/2.0.2-foss-2022a + +This is a list of extensions included in the module: + +SemiBin-2.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sentence-Transformers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sentence-Transformers.md index 1bfb7a7c2fbc..a3678a1a61e5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sentence-Transformers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sentence-Transformers.md @@ -6,6 +6,10 @@ hide: Sentence-Transformers ===================== + +Sentence Transformers provides an easy method to compute dense vector representations for sentences, paragraphs, and images + +https://github.com/UKPLab/sentence-transformers # Available modules @@ -17,8 +21,15 @@ To start using Sentence-Transformers, load one of these modules using a `module module load Sentence-Transformers/2.2.2-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Sentence-Transformers/2.2.2-foss-2022b|x|x|x|x|x|x| + + +### Sentence-Transformers/2.2.2-foss-2022b + +This is a list of extensions included in the module: + +sentence-transformers-2.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SentencePiece.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SentencePiece.md index fa023995d038..833f1ee13bfc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SentencePiece.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SentencePiece.md @@ -6,6 +6,10 @@ hide: SentencePiece ============= + +Unsupervised text tokenizer for Neural Network-based text generation. + +https://github.com/google/sentencepiece # Available modules @@ -17,7 +21,7 @@ To start using SentencePiece, load one of these modules using a `module load` co module load SentencePiece/0.1.99-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqAn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqAn.md index 8c96c7e3e259..d3e51b556d5e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqAn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqAn.md @@ -6,6 +6,10 @@ hide: SeqAn ===== + +SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. + +https://github.com/seqan/seqan # Available modules @@ -17,7 +21,7 @@ To start using SeqAn, load one of these modules using a `module load` command li module load SeqAn/2.4.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqKit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqKit.md index 8784379b1aa2..719c4e302f71 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqKit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqKit.md @@ -6,6 +6,10 @@ hide: SeqKit ====== + +SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation + +https://bioinf.shenwei.me/seqkit/ # Available modules @@ -17,7 +21,7 @@ To start using SeqKit, load one of these modules using a `module load` command l module load SeqKit/2.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqLib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqLib.md index 63e85f5f230a..8007d6ae51ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqLib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqLib.md @@ -6,6 +6,10 @@ hide: SeqLib ====== + +C++ interface to HTSlib, BWA-MEM and Fermi. + +https://github.com/walaj/SeqLib # Available modules @@ -17,7 +21,7 @@ To start using SeqLib, load one of these modules using a `module load` command l module load SeqLib/1.2.0-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Serf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Serf.md index 8a2d02364107..405ed8f2bfc2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Serf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Serf.md @@ -6,6 +6,10 @@ hide: Serf ==== + +The serf library is a high performance C-based HTTP client library built upon the Apache Portable Runtime (APR) library + +https://serf.apache.org/ # Available modules @@ -17,7 +21,7 @@ To start using Serf, load one of these modules using a `module load` command lik module load Serf/1.3.9-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Seurat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Seurat.md index f7ea627baca0..6938ba2d5ce9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Seurat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Seurat.md @@ -6,6 +6,10 @@ hide: Seurat ====== + +Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data. + +https://satijalab.org/seurat # Available modules @@ -17,7 +21,7 @@ To start using Seurat, load one of these modules using a `module load` command l module load Seurat/4.3.0-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,28 @@ module load Seurat/4.3.0-foss-2022a-R-4.2.1 |Seurat/4.2.0-foss-2022a-R-4.2.1|x|x|x|-|x|x| |Seurat/4.0.1-foss-2020b-R-4.0.3|-|x|x|x|x|x| |Seurat/3.1.5-foss-2020a-R-4.0.0|-|x|x|-|x|x| + + +### Seurat/4.3.0-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +Matrix-1.5-4, sctransform-0.3.5, Seurat-4.3.0, SeuratObject-4.1.3, sp-1.5-1, spatstat.data-3.0-0, spatstat.explore-3.0-5, spatstat.geom-3.0-3, spatstat.random-3.0-1, spatstat.sparse-3.0-0, spatstat.utils-3.0-1, uwot-0.1.14 + +### Seurat/4.3.0-foss-2021b-R-4.1.2 + +This is a list of extensions included in the module: + +Matrix-1.5-3, sctransform-0.3.5, Seurat-4.3.0, SeuratObject-4.1.3, sp-1.5-1, spatstat.data-3.0-0, spatstat.explore-3.0-5, spatstat.geom-3.0-3, spatstat.random-3.0-1, spatstat.sparse-3.0-0, spatstat.utils-3.0-1, uwot-0.1.14 + +### Seurat/4.2.0-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +Matrix-1.5-1, sctransform-0.3.5, Seurat-4.2.0, SeuratObject-4.1.2, uwot-0.1.14 + +### Seurat/4.0.1-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: + +Seurat-4.0.1, spatstat.core-2.0-0, spatstat.data-2.1-0, spatstat.geom-2.0-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratData.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratData.md index baa47a88453f..250e656aa034 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratData.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratData.md @@ -6,6 +6,10 @@ hide: SeuratData ========== + +SeuratData is a mechanism for distributing datasets in the form of Seurat objects using R's internalpackage and data management systems. + +https://github.com/satijalab/seurat-data # Available modules @@ -17,7 +21,7 @@ To start using SeuratData, load one of these modules using a `module load` comma module load SeuratData/20210514-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratDisk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratDisk.md index a2b2910aa0ca..25f860940e87 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratDisk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratDisk.md @@ -6,6 +6,10 @@ hide: SeuratDisk ========== + +Interfaces for HDF5-based Single Cell File Formats + +https://github.com/mojaveazure/seurat-disk # Available modules @@ -17,7 +21,7 @@ To start using SeuratDisk, load one of these modules using a `module load` comma module load SeuratDisk/0.0.0.9020-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratWrappers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratWrappers.md index 98e848c45472..f3bb9700fced 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratWrappers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratWrappers.md @@ -6,6 +6,10 @@ hide: SeuratWrappers ============== + +SeuratWrappers is a collection of community-provided methods and extensions for Seurat + +https://github.com/satijalab/seurat-wrappers # Available modules @@ -17,7 +21,7 @@ To start using SeuratWrappers, load one of these modules using a `module load` c module load SeuratWrappers/20210528-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Shapely.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Shapely.md index c4881a60565c..37f5792aa0d7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Shapely.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Shapely.md @@ -6,6 +6,10 @@ hide: Shapely ======= + +Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects.It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries. + +https://github.com/Toblerity/Shapely # Available modules @@ -17,7 +21,7 @@ To start using Shapely, load one of these modules using a `module load` command module load Shapely/2.0.1-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Shasta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Shasta.md index e9d007311180..07b91cf60d9a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Shasta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Shasta.md @@ -6,6 +6,10 @@ hide: Shasta ====== + +The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using DNA reads generatedby Oxford Nanopore flow cells as input. Computational methods used by the Shasta assembler include:Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors inhomopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads. Using in some phases ofthe computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10). + +https://github.com/chanzuckerberg/shasta # Available modules @@ -17,7 +21,7 @@ To start using Shasta, load one of these modules using a `module load` command l module load Shasta/0.8.0-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Short-Pair.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Short-Pair.md index 3238aac2440c..501f7fb83e4e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Short-Pair.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Short-Pair.md @@ -6,6 +6,10 @@ hide: Short-Pair ========== + +Sensitive Short Read Homology Search for Paired-End Reads + +https://sourceforge.net/projects/short-pair # Available modules @@ -17,7 +21,7 @@ To start using Short-Pair, load one of these modules using a `module load` comma module load Short-Pair/20170125-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SiNVICT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SiNVICT.md index 1ec9da3205a2..b483c19c075f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SiNVICT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SiNVICT.md @@ -6,6 +6,10 @@ hide: SiNVICT ======= + +SiNVICT is a tool for the detection of SNVs and indels from cfDNA/ctDNA samples obtained by ultra-deep sequencing. + +https://github.com/sfu-compbio/sinvict # Available modules @@ -17,7 +21,7 @@ To start using SiNVICT, load one of these modules using a `module load` command module load SiNVICT/1.0-20180817-GCC-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sibelia.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sibelia.md index b31a73dda817..4e601b36109f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sibelia.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sibelia.md @@ -6,6 +6,10 @@ hide: Sibelia ======= + +Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. + +http://bioinf.spbau.ru/en/sibelia # Available modules @@ -17,7 +21,7 @@ To start using Sibelia, load one of these modules using a `module load` command module load Sibelia/3.0.7-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SimNIBS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SimNIBS.md index e5da2a26eb06..bc514ab61be6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SimNIBS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SimNIBS.md @@ -6,6 +6,10 @@ hide: SimNIBS ======= + +SimNIBS is a free and open source software package for the Simulation of Non-invasive Brain Stimulation. + +https://simnibs.github.io/simnibs # Available modules @@ -17,8 +21,15 @@ To start using SimNIBS, load one of these modules using a `module load` command module load SimNIBS/3.2.4-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SimNIBS/3.2.4-foss-2020b|-|x|x|x|x|x| + + +### SimNIBS/3.2.4-foss-2020b + +This is a list of extensions included in the module: + +SimNIBS-3.2.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SimPEG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SimPEG.md index 4a2a91ee6d3a..76472bbab7e7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SimPEG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SimPEG.md @@ -6,6 +6,10 @@ hide: SimPEG ====== + +Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications. + +https://simpeg.xyz/ # Available modules @@ -17,10 +21,29 @@ To start using SimPEG, load one of these modules using a `module load` command l module load SimPEG/0.18.1-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SimPEG/0.18.1-intel-2021b|x|x|x|-|x|x| |SimPEG/0.18.1-foss-2021b|x|x|x|-|x|x| |SimPEG/0.14.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### SimPEG/0.18.1-intel-2021b + +This is a list of extensions included in the module: + +discretize-0.8.2, empymod-2.2.1, geoana-0.4.0, pydiso-0.0.3, pymatsolver-0.2.0, SimPEG-0.18.1, utm-0.7.0 + +### SimPEG/0.18.1-foss-2021b + +This is a list of extensions included in the module: + +discretize-0.8.2, empymod-2.2.1, geoana-0.4.0, pymatsolver-0.2.0, SimPEG-0.18.1, utm-0.7.0 + +### SimPEG/0.14.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +discretize-0.4.12, empymod-2.0.1, geoana-0.0.6, properties-0.6.1, pymatsolver-0.1.2, pyMKL-0.0.3, SimPEG-0.14.1, utm-0.5.0, vectormath-0.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleElastix.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleElastix.md index acc6654d2659..6a6dcdcc9f1d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleElastix.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleElastix.md @@ -6,6 +6,10 @@ hide: SimpleElastix ============= + +Multi-lingual medical image registration library. + +https://simpleelastix.github.io # Available modules @@ -17,7 +21,7 @@ To start using SimpleElastix, load one of these modules using a `module load` co module load SimpleElastix/1.1.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleITK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleITK.md index 7f57f028437e..8fa68cb58e80 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleITK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleITK.md @@ -6,6 +6,10 @@ hide: SimpleITK ========= + +SimpleITK is a simplified programming interface to the algorithms and data structures of the Insight Toolkit (ITK). + +http://www.simpleitk.org # Available modules @@ -17,7 +21,7 @@ To start using SimpleITK, load one of these modules using a `module load` comman module load SimpleITK/2.1.1.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SlamDunk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SlamDunk.md index bf741a28d518..aaecae51e9ce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SlamDunk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SlamDunk.md @@ -6,6 +6,10 @@ hide: SlamDunk ======== + +SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducibleSLAMseq data analysis. + +https://t-neumann.github.io/slamdunk # Available modules @@ -17,7 +21,7 @@ To start using SlamDunk, load one of these modules using a `module load` command module load SlamDunk/0.4.3-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sniffles.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sniffles.md index 83718e9724f8..4c6bf258b347 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sniffles.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sniffles.md @@ -6,6 +6,10 @@ hide: Sniffles ======== + +A fast structural variant caller for long-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data. + +https://github.com/fritzsedlazeck/Sniffles # Available modules @@ -17,8 +21,15 @@ To start using Sniffles, load one of these modules using a `module load` command module load Sniffles/2.0.7-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Sniffles/2.0.7-GCC-11.3.0|x|x|x|x|x|x| + + +### Sniffles/2.0.7-GCC-11.3.0 + +This is a list of extensions included in the module: + +Sniffles-2.0.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SoX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SoX.md index 5fe876fe071e..036f3530b32a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SoX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SoX.md @@ -6,6 +6,10 @@ hide: SoX === + +SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files to other popular audio file types and also apply sound effects and filters during the conversion. + +https://sourceforge.net/projects/sox # Available modules @@ -17,7 +21,7 @@ To start using SoX, load one of these modules using a `module load` command like module load SoX/14.4.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Spark.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Spark.md index d465d74f0cb3..220d292439b3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Spark.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Spark.md @@ -6,6 +6,10 @@ hide: Spark ===== + +Spark is Hadoop MapReduce done in memory + +https://spark.apache.org # Available modules @@ -17,7 +21,7 @@ To start using Spark, load one of these modules using a `module load` command li module load Spark/3.5.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,28 @@ module load Spark/3.5.0-foss-2023a |Spark/3.2.1-foss-2021b|x|x|x|-|x|x| |Spark/3.1.1-fosscuda-2020b|-|-|-|-|x|-| |Spark/2.4.5-intel-2019b-Python-3.7.4-Java-1.8|-|x|x|-|x|-| + + +### Spark/3.5.0-foss-2023a + +This is a list of extensions included in the module: + +py4j-0.10.9.7 + +### Spark/3.2.1-foss-2021b + +This is a list of extensions included in the module: + +py4j-0.10.9.5 + +### Spark/3.1.1-fosscuda-2020b + +This is a list of extensions included in the module: + +py4j-0.10.9.2 + +### Spark/2.4.5-intel-2019b-Python-3.7.4-Java-1.8 + +This is a list of extensions included in the module: + +py4j-0.10.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SpatialDE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SpatialDE.md index a9f4ba7277b5..2abf1974ddff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SpatialDE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SpatialDE.md @@ -6,6 +6,10 @@ hide: SpatialDE ========= + +SpatialDE is a method to identify genes which significantly depend on spatial coordinates in non-linear and non-parametric ways. The intended applications are spatially resolved RNA-sequencing from e.g. Spatial Transcriptomics, or in situ gene expression measurements from e.g. SeqFISH or MERFISH. + +https://pypi.org/project/SpatialDE # Available modules @@ -17,8 +21,15 @@ To start using SpatialDE, load one of these modules using a `module load` comman module load SpatialDE/1.1.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |SpatialDE/1.1.3-foss-2022a|x|x|x|x|x|x| + + +### SpatialDE/1.1.3-foss-2022a + +This is a list of extensions included in the module: + +NaiveDE-1.2.0, patsy-0.5.3, SpatialDE-1.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Spyder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Spyder.md index c533a585e697..95b28255e9c8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Spyder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Spyder.md @@ -6,6 +6,10 @@ hide: Spyder ====== + +Spyder is an interactive Python development environment providing MATLAB-like features in a simple and light-weighted software. + +https://github.com/spyder-ide/spyder # Available modules @@ -17,8 +21,15 @@ To start using Spyder, load one of these modules using a `module load` command l module load Spyder/4.1.5-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Spyder/4.1.5-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### Spyder/4.1.5-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +arrow-0.17.0, astroid-2.4.2, async_generator-1.10, autopep8-1.5.4, binaryornot-0.4.4, bleach-3.2.1, cloudpickle-1.6.0, cookiecutter-1.7.2, decorator-4.4.2, diff-match-patch-20200713, flake8-3.8.4, helpdev-0.7.1, isort-5.6.3, jedi-0.17.1, jeepney-0.4.3, jinja2-time-0.2.0, jupyter_client-6.1.7, jupyterlab_pygments-0.1.2, keyring-21.4.0, keyrings.alt-4.0.0, lazy-object-proxy-1.4.3, mccabe-0.6.1, nbclient-0.5.1, nest_asyncio-1.4.1, numpydoc-1.1.0, pathtools-0.1.2, poyo-0.5.0, pycodestyle-2.6.0, pydocstyle-5.1.1, pyflakes-2.2.0, pylint-2.6.0, pyrsistent-0.17.3, python-jsonrpc-server-0.4.0, python-language-server-0.35.1, python-slugify-4.0.1, pyxdg-0.26, QDarkStyle-2.8.1, QtAwesome-1.0.1, qtconsole-4.7.7, QtPy-1.9.0, rope-0.18.0, SecretStorage-3.1.2, spyder-4.1.5, spyder-kernels-1.9.4, text-unidecode-1.3, traitlets-5.0.4, typed_ast-1.4.1, ujson-4.0.1, watchdog-0.10.3, wrapt-1.12.1, wurlitzer-2.0.1, yapf-0.30.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SqueezeMeta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SqueezeMeta.md index 9a183973b6f5..189349a2d445 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SqueezeMeta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SqueezeMeta.md @@ -6,6 +6,10 @@ hide: SqueezeMeta =========== + +SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. + +https://github.com/jtamames/SqueezeMeta # Available modules @@ -17,7 +21,7 @@ To start using SqueezeMeta, load one of these modules using a `module load` comm module load SqueezeMeta/1.5.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Squidpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Squidpy.md index 1382fde99bc7..2e0d2aa947fc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Squidpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Squidpy.md @@ -6,6 +6,10 @@ hide: Squidpy ======= + +Squidpy is a tool for the analysis and visualization of spatial molecular data. + +https://squidpy.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using Squidpy, load one of these modules using a `module load` command module load Squidpy/1.2.2-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Squidpy/1.2.2-foss-2021b|x|x|x|-|x|x| + + +### Squidpy/1.2.2-foss-2021b + +This is a list of extensions included in the module: + +dask-image-2022.9.0, fsspec-2022.11.0, inflect-6.0.2, matplotlib-scalebar-0.8.1, omnipath-1.0.6, PIMS-0.6.1, pydantic-1.10.2, slicerator-1.1.0, squidpy-1.2.2, typing_extensions-4.4.0, validators-0.20.0, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Stacks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Stacks.md index baa0159c5ed3..d1fc967c9551 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Stacks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Stacks.md @@ -6,6 +6,10 @@ hide: Stacks ====== + +Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. + +http://catchenlab.life.illinois.edu/stacks # Available modules @@ -17,7 +21,7 @@ To start using Stacks, load one of these modules using a `module load` command l module load Stacks/2.53-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Stata.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Stata.md index 79d9a0bda82a..666820aacb8f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Stata.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Stata.md @@ -6,6 +6,10 @@ hide: Stata ===== + +Stata is a complete, integrated statistical software package that provides everything you need for data analysis, data management, and graphics. + +https://www.stata.com/ # Available modules @@ -17,7 +21,7 @@ To start using Stata, load one of these modules using a `module load` command li module load Stata/15 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Statistics-R.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Statistics-R.md index b3bb26f5a7d8..e9ad9b8d2d3e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Statistics-R.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Statistics-R.md @@ -6,6 +6,10 @@ hide: Statistics-R ============ + +Perl interface with the R statistical program + +https://metacpan.org/pod/Statistics::R # Available modules @@ -17,7 +21,7 @@ To start using Statistics-R, load one of these modules using a `module load` com module load Statistics-R/0.34-foss-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/StringTie.md b/mkdocs/docs/HPC/only/gent/available_software/detail/StringTie.md index 1cebd4f70d94..ce32c76490f0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/StringTie.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/StringTie.md @@ -6,6 +6,10 @@ hide: StringTie ========= + +StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts + +https://ccb.jhu.edu/software/stringtie/ # Available modules @@ -17,7 +21,7 @@ To start using StringTie, load one of these modules using a `module load` comman module load StringTie/2.2.1-GCC-11.2.0-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Structure.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Structure.md index 13e622697f81..0faeba3b577e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Structure.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Structure.md @@ -6,6 +6,10 @@ hide: Structure ========= + +The program structure is a free software package for using multi-locus genotype data to investigate population structure. + +https://web.stanford.edu/group/pritchardlab/structure.html # Available modules @@ -17,7 +21,7 @@ To start using Structure, load one of these modules using a `module load` comman module load Structure/2.3.4-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Structure_threader.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Structure_threader.md index cde66ddd0804..4c49a5e567d2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Structure_threader.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Structure_threader.md @@ -6,6 +6,10 @@ hide: Structure_threader ================== + +A program to parallelize the runs of Structure, fastStructure, MavericK and ALStructure software. + +https://github.com/StuntsPT/Structure_threader # Available modules @@ -17,8 +21,15 @@ To start using Structure_threader, load one of these modules using a `module loa module load Structure_threader/1.3.10-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Structure_threader/1.3.10-foss-2022b|x|x|x|x|x|x| + + +### Structure_threader/1.3.10-foss-2022b + +This is a list of extensions included in the module: + +colorlover-0.3.0, Structure_threader-1.3.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SuAVE-biomat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SuAVE-biomat.md index d9d07d65d682..9f5335db0c01 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SuAVE-biomat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SuAVE-biomat.md @@ -6,6 +6,10 @@ hide: SuAVE-biomat ============ + +Surface Assessment via Grid Evaluation (SuAVE) for Every Surface Curvature and Cavity Shape + +https://github.com/SuAVE-Software/source_v2.0 # Available modules @@ -17,7 +21,7 @@ To start using SuAVE-biomat, load one of these modules using a `module load` com module load SuAVE-biomat/2.0.0-20230815-intel-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md index f05c9e1a9570..2488fdc73e2e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md @@ -6,6 +6,10 @@ hide: Subread ======= + +High performance read alignment, quantification and mutation discovery + +http://subread.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using Subread, load one of these modules using a `module load` command module load Subread/2.0.3-GCC-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Subversion.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Subversion.md index e47065ce2f25..60b95bdcd057 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Subversion.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Subversion.md @@ -6,6 +6,10 @@ hide: Subversion ========== + +Subversion is an open source version control system. + +https://subversion.apache.org/ # Available modules @@ -17,7 +21,7 @@ To start using Subversion, load one of these modules using a `module load` comma module load Subversion/1.14.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SuiteSparse.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SuiteSparse.md index 15c4d0932e27..7123327500cc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SuiteSparse.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SuiteSparse.md @@ -6,6 +6,10 @@ hide: SuiteSparse =========== + +SuiteSparse is a collection of libraries manipulate sparse matrices. + +https://faculty.cse.tamu.edu/davis/suitesparse.html # Available modules @@ -17,7 +21,7 @@ To start using SuiteSparse, load one of these modules using a `module load` comm module load SuiteSparse/7.1.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU.md index 587ac4786bef..0f6617df25ce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU.md @@ -6,6 +6,10 @@ hide: SuperLU ======= + +SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. + +https://crd-legacy.lbl.gov/~xiaoye/SuperLU/ # Available modules @@ -17,7 +21,7 @@ To start using SuperLU, load one of these modules using a `module load` command module load SuperLU/5.2.2-intel-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU_DIST.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU_DIST.md index 8f315be0c189..43c1aec46bfa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU_DIST.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU_DIST.md @@ -6,6 +6,10 @@ hide: SuperLU_DIST ============ + +SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. + +https://crd-legacy.lbl.gov/~xiaoye/SuperLU/ # Available modules @@ -17,7 +21,7 @@ To start using SuperLU_DIST, load one of these modules using a `module load` com module load SuperLU_DIST/8.1.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Szip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Szip.md index d0f84e524446..7e442083ceb9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Szip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Szip.md @@ -6,6 +6,10 @@ hide: Szip ==== + +Szip compression software, providing lossless compression of scientific data + +https://www.hdfgroup.org/doc_resource/SZIP/ # Available modules @@ -17,7 +21,7 @@ To start using Szip, load one of these modules using a `module load` command lik module load Szip/2.1.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TALON.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TALON.md index 251a2dc8b8d1..cf11bb24ac4d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TALON.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TALON.md @@ -6,6 +6,10 @@ hide: TALON ===== + +TALON is a Python package for identifying and quantifying known andnovel genes/isoforms in long-read transcriptome data sets. TALON is technology-agnosticin that it works from mapped SAM files, allowing data from different sequencing platforms(i.e. PacBio and Oxford Nanopore) to be analyzed side by side. + +https://github.com/mortazavilab/TALON # Available modules @@ -17,7 +21,7 @@ To start using TALON, load one of these modules using a `module load` command li module load TALON/5.0-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TAMkin.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TAMkin.md index a8fec9656105..e70d48329424 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TAMkin.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TAMkin.md @@ -6,6 +6,10 @@ hide: TAMkin ====== + +TAMkin is a post-processing toolkit for normal mode analysis, thermochemistry and reaction kinetics. It uses a Hessian computation from a standard computational chemistry program as its input. + +https://molmod.github.io/tamkin/ # Available modules @@ -17,7 +21,7 @@ To start using TAMkin, load one of these modules using a `module load` command l module load TAMkin/1.2.6-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TCLAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TCLAP.md index 84de28a4ab31..a42388fd2305 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TCLAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TCLAP.md @@ -6,6 +6,10 @@ hide: TCLAP ===== + +TCLAP is a small, flexible library that provides a simple interface for defining and accessingcommand line arguments. It was intially inspired by the user friendly CLAP libary. + +http://tclap.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using TCLAP, load one of these modules using a `module load` command li module load TCLAP/1.2.4-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TELEMAC-MASCARET.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TELEMAC-MASCARET.md index 1dd32e196dd5..002d1534370b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TELEMAC-MASCARET.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TELEMAC-MASCARET.md @@ -6,6 +6,10 @@ hide: TELEMAC-MASCARET ================ + +TELEMAC-MASCARET is an integrated suite of solvers for use in the field of free-surface flow. Havingbeen used in the context of many studies throughout the world, it has become one of the major standards in its field. + +http://www.opentelemac.org # Available modules @@ -17,7 +21,7 @@ To start using TELEMAC-MASCARET, load one of these modules using a `module load` module load TELEMAC-MASCARET/8p3r1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TEtranscripts.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TEtranscripts.md index 99d2c8aa41e2..35e36cff36bb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TEtranscripts.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TEtranscripts.md @@ -6,6 +6,10 @@ hide: TEtranscripts ============= + +TEtranscripts and TEcount takes RNA-seq (and similar data) and annotates readsto both genes & transposable elements.TEtranscripts then performs differential analysis using DESeq2. + +https://github.com/mhammell-laboratory/TEtranscripts # Available modules @@ -17,8 +21,15 @@ To start using TEtranscripts, load one of these modules using a `module load` co module load TEtranscripts/2.2.0-foss-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |TEtranscripts/2.2.0-foss-2020a|-|x|x|-|x|x| + + +### TEtranscripts/2.2.0-foss-2020a + +This is a list of extensions included in the module: + +argparse-1.4.0, TEtranscripts-2.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TOBIAS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TOBIAS.md index c9792c5689c7..3741e34d2728 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TOBIAS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TOBIAS.md @@ -6,6 +6,10 @@ hide: TOBIAS ====== + +TOBIAS is a collection of command-line bioinformatics tools forperforming footprinting analysis on ATAC-seq data, and includes: Correction ofTn5 insertion bias; Calculation of footprint scores within regulatory regions;Estimation of bound/unbound transcription factor binding sites; andVisualization of footprints within and across different conditions + +https://github.com/loosolab/TOBIAS # Available modules @@ -17,8 +21,15 @@ To start using TOBIAS, load one of these modules using a `module load` command l module load TOBIAS/0.12.12-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |TOBIAS/0.12.12-foss-2021b|x|x|x|-|x|x| + + +### TOBIAS/0.12.12-foss-2021b + +This is a list of extensions included in the module: + +configs-3.0.3, kneed-0.7.0, logomaker-0.8, MOODS-python-1.9.4.1, PyPDF2-1.26.0, reportlab-3.6.2, statistics-1.0.3.5, svist4get-1.2.24, TOBIAS-0.12.12, Wand-0.6.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TOPAS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TOPAS.md index 2947682e487f..29d36dbc59a4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TOPAS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TOPAS.md @@ -6,6 +6,10 @@ hide: TOPAS ===== + +TOPAS wraps and extends the Geant4 Simulation Toolkit to make advanced Monte Carlo simulation of allforms of radiotherapy easier to use for medical physicists. + +https://www.topasmc.org # Available modules @@ -17,7 +21,7 @@ To start using TOPAS, load one of these modules using a `module load` command li module load TOPAS/3.9-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TRF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TRF.md index 93a0c19c689d..1b95f997d566 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TRF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TRF.md @@ -6,6 +6,10 @@ hide: TRF === + +Tandem repeats finder: a program to analyze DNA sequences. Legacy version. + +https://tandem.bu.edu/trf/trf.html # Available modules @@ -17,7 +21,7 @@ To start using TRF, load one of these modules using a `module load` command like module load TRF/4.09.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TRUST4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TRUST4.md index 8b12a5a66452..df25e825db97 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TRUST4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TRUST4.md @@ -6,6 +6,10 @@ hide: TRUST4 ====== + +Tcr Receptor Utilities for Solid Tissue (TRUST) is acomputational tool to analyze TCR and BCR sequences using unselected RNAsequencing data, profiled from solid tissues, including tumors. TRUST4 performsde novo assembly on V, J, C genes including the hypervariablecomplementarity-determining region 3 (CDR3) and reports consensus of BCR/TCRsequences. TRUST4 then realigns the contigs to IMGT reference gene sequences toreport the corresponding information. TRUST4 supports both single-end andpaired-end sequencing data with any read length. + +https://github.com/liulab-dfci/TRUST4 # Available modules @@ -17,7 +21,7 @@ To start using TRUST4, load one of these modules using a `module load` command l module load TRUST4/1.0.6-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Tcl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Tcl.md index e53f1685298a..fe367ad0521f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Tcl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Tcl.md @@ -6,6 +6,10 @@ hide: Tcl === + +Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. + +http://www.tcl.tk/ # Available modules @@ -17,7 +21,7 @@ To start using Tcl, load one of these modules using a `module load` command like module load Tcl/8.6.13-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TensorFlow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TensorFlow.md index f60858023b92..beb9f79d4237 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TensorFlow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TensorFlow.md @@ -6,6 +6,10 @@ hide: TensorFlow ========== + +An open-source software library for Machine Intelligence + +https://www.tensorflow.org/ # Available modules @@ -17,7 +21,7 @@ To start using TensorFlow, load one of these modules using a `module load` comma module load TensorFlow/2.13.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -41,3 +45,124 @@ module load TensorFlow/2.13.0-foss-2023a |TensorFlow/2.2.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| |TensorFlow/2.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| |TensorFlow/1.15.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### TensorFlow/2.13.0-foss-2023a + +This is a list of extensions included in the module: + +absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, cachetools-5.3.1, google-auth-2.22.0, google-auth-oauthlib-1.0.0, google-pasta-0.2.0, grpcio-1.57.0, gviz-api-1.10.0, keras-2.13.1, Markdown-3.4.4, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.3.0, requests-oauthlib-1.3.1, rsa-4.9, tblib-2.0.0, tensorboard-2.13.0, tensorboard-data-server-0.7.1, tensorboard-plugin-profile-2.13.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.13.0, tensorflow-estimator-2.13.0, termcolor-2.3.0, Werkzeug-2.3.7, wrapt-1.15.0 + +### TensorFlow/2.13.0-foss-2022b + +This is a list of extensions included in the module: + +absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, cachetools-5.3.1, google-auth-2.22.0, google-auth-oauthlib-1.0.0, google-pasta-0.2.0, grpcio-1.56.2, gviz-api-1.10.0, keras-2.13.1, Markdown-3.4.4, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.3.0, requests-oauthlib-1.3.1, rsa-4.9, tblib-2.0.0, tensorboard-2.13.0, tensorboard-data-server-0.7.1, tensorboard-plugin-profile-2.13.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.13.0, tensorflow-estimator-2.13.0, termcolor-2.3.0, Werkzeug-2.3.6, wrapt-1.15.0 + +### TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.2.1, gast-0.4.0, google-auth-2.16.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.51.1, gviz-api-1.10.0, keras-2.11.0, Markdown-3.4.1, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.9, tblib-1.7.0, tensorboard-2.11.1, tensorboard-data-server-0.6.1, tensorboard-plugin-profile-2.11.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.11.0, tensorflow-estimator-2.11.0, termcolor-1.1.0, Werkzeug-2.2.2, wrapt-1.14.1 + +### TensorFlow/2.11.0-foss-2022a + +This is a list of extensions included in the module: + +absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.2.1, gast-0.4.0, google-auth-2.16.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.51.1, gviz-api-1.10.0, keras-2.11.0, Markdown-3.4.1, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.9, tblib-1.7.0, tensorboard-2.11.1, tensorboard-data-server-0.6.1, tensorboard-plugin-profile-2.11.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.11.0, tensorflow-estimator-2.11.0, termcolor-1.1.0, Werkzeug-2.2.2, wrapt-1.14.1 + +### TensorFlow/2.8.4-foss-2021b + +This is a list of extensions included in the module: + +absl-py-1.0.0, astunparse-1.6.3, cachetools-5.1.0, google-auth-2.6.6, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.46.1, keras-2.8.0, Keras_Preprocessing-1.1.2, Markdown-3.3.7, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.2.8, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_wit-1.8.1, TensorFlow-2.8.4, tensorflow_estimator-2.8.0, termcolor-1.1.0, Werkzeug-2.1.2, wrapt-1.14.1 + +### TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.0.0, dill-0.3.4, gast-0.4.0, google-auth-2.6.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.43.0, gviz-api-1.10.0, keras-2.7.0, Keras_Preprocessing-1.1.2, Markdown-3.3.6, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.0, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.1, TensorFlow-2.7.1, tensorflow_estimator-2.7.0, termcolor-1.1.0, Werkzeug-2.0.3, wrapt-1.13.3 + +### TensorFlow/2.7.1-foss-2021b + +This is a list of extensions included in the module: + +absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.0.0, dill-0.3.4, gast-0.4.0, google-auth-2.6.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.43.0, gviz-api-1.10.0, keras-2.7.0, Keras_Preprocessing-1.1.2, Markdown-3.3.6, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.0, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.1, TensorFlow-2.7.1, tensorflow_estimator-2.7.0, termcolor-1.1.0, Werkzeug-2.0.3, wrapt-1.13.3 + +### TensorFlow/2.6.0-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, clang-5.0, dill-0.3.3, gast-0.4.0, google-auth-1.35.0, google-auth-oauthlib-0.4.5, google-pasta-0.2.0, grpcio-1.39.0, gviz-api-1.9.0, keras-2.6.0, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.1, opt_einsum-3.3.0, portpicker-1.4.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.6.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.6.0, tensorflow_estimator-2.6.0, termcolor-1.1.0, Werkzeug-2.0.1, wrapt-1.12.1 + +### TensorFlow/2.6.0-foss-2021a + +This is a list of extensions included in the module: + +absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, clang-5.0, dill-0.3.3, gast-0.4.0, google-auth-1.35.0, google-auth-oauthlib-0.4.5, google-pasta-0.2.0, grpcio-1.39.0, gviz-api-1.9.0, keras-2.6.0, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.1, opt_einsum-3.3.0, portpicker-1.4.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.6.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.6.0, tensorflow_estimator-2.6.0, termcolor-1.1.0, Werkzeug-2.0.1, wrapt-1.12.1 + +### TensorFlow/2.5.3-foss-2021a + +This is a list of extensions included in the module: + +absl-py-0.15.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.4, dill-0.3.4, gast-0.4.0, google-auth-1.35.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.43.0, gviz-api-1.10.0, keras_nightly-2.5.0.dev2021032900, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.5.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.1, TensorFlow-2.5.3, tensorflow_estimator-2.5.0, termcolor-1.1.0, Werkzeug-2.0.2, wrapt-1.13.3 + +### TensorFlow/2.5.0-fosscuda-2020b + +This is a list of extensions included in the module: + +absl-py-0.12.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, dill-0.3.3, gast-0.4.0, google-auth-1.30.0, google-auth-oauthlib-0.4.4, google-pasta-0.2.0, grpcio-1.34.1, gviz-api-1.9.0, keras_nightly-2.5.0.dev2021032900, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.0, opt_einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.5.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.4.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.5.0, tensorflow_estimator-2.5.0, termcolor-1.1.0, Werkzeug-2.0.0, wrapt-1.12.1 + +### TensorFlow/2.5.0-foss-2020b + +This is a list of extensions included in the module: + +absl-py-0.12.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, dill-0.3.3, gast-0.4.0, google-auth-1.30.0, google-auth-oauthlib-0.4.4, google-pasta-0.2.0, grpcio-1.34.1, gviz-api-1.9.0, keras_nightly-2.5.0.dev2021032900, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.0, opt_einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.5.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.4.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.5.0, tensorflow_estimator-2.5.0, termcolor-1.1.0, Werkzeug-2.0.0, wrapt-1.12.1 + +### TensorFlow/2.4.1-fosscuda-2020b + +This is a list of extensions included in the module: + +absl-py-0.10.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.0, dill-0.3.3, gast-0.3.3, google-auth-1.24.0, google-auth-oauthlib-0.4.2, google-pasta-0.2.0, grpcio-1.32.0, gviz-api-1.9.0, h5py-2.10.0, Keras-Preprocessing-1.1.2, Markdown-3.3.3, oauthlib-3.1.0, opt-einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7, tblib-1.7.0, tensorboard-2.4.1, tensorboard-plugin-profile-2.4.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.4.1, tensorflow-estimator-2.4.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1 + +### TensorFlow/2.4.1-foss-2020b + +This is a list of extensions included in the module: + +absl-py-0.10.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.0, dill-0.3.3, gast-0.3.3, google-auth-1.24.0, google-auth-oauthlib-0.4.2, google-pasta-0.2.0, grpcio-1.32.0, gviz-api-1.9.0, h5py-2.10.0, Keras-Preprocessing-1.1.2, Markdown-3.3.3, oauthlib-3.1.0, opt-einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7, tblib-1.7.0, tensorboard-2.4.1, tensorboard-plugin-profile-2.4.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.4.1, tensorflow-estimator-2.4.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1 + +### TensorFlow/2.3.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +absl-py-0.10.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.1.1, gast-0.3.3, google-auth-1.22.1, google-auth-oauthlib-0.4.1, google-pasta-0.2.0, grpcio-1.33.1, gviz-api-1.9.0, Keras-Preprocessing-1.1.2, Markdown-3.2.2, oauthlib-3.1.0, opt-einsum-3.3.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.6, tensorboard-2.3.0, tensorboard-plugin-profile-2.3.0, tensorboard-plugin-wit-1.7.0, TensorFlow-2.3.1, tensorflow-estimator-2.3.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1 + +### TensorFlow/2.2.3-foss-2020b + +This is a list of extensions included in the module: + +absl-py-0.12.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, gast-0.3.3, google-auth-1.35.0, google-auth-oauthlib-0.4.5, google-pasta-0.2.0, grpcio-1.39.0, gviz-api-1.9.0, h5py-2.10.0, Keras-Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.1, opt-einsum-3.3.0, portpicker-1.4.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tensorboard-2.2.2, tensorboard-plugin-profile-2.2.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.2.3, tensorflow-estimator-2.2.0, termcolor-1.1.0, Werkzeug-2.0.1, wrapt-1.12.1 + +### TensorFlow/2.2.2-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +absl-py-0.12.0, astunparse-1.6.3, cachetools-4.2.1, gast-0.3.3, google-auth-1.28.0, google-auth-oauthlib-0.4.4, google-pasta-0.2.0, grpcio-1.36.1, gviz-api-1.9.0, Keras-Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.0, opt-einsum-3.3.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tensorboard-2.2.2, tensorboard-plugin-profile-2.2.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.2.2, tensorflow-estimator-2.2.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1 + +### TensorFlow/2.2.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +absl-py-0.9.0, astunparse-1.6.3, cachetools-4.1.0, gast-0.3.3, google-auth-1.14.2, google-auth-oauthlib-0.4.1, google-pasta-0.2.0, grpcio-1.28.1, Keras-Applications-1.0.8, Keras-Preprocessing-1.1.0, Markdown-3.2.1, oauthlib-3.1.0, opt-einsum-3.2.1, protobuf-3.11.3, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.0, scipy-1.4.1, tensorboard-2.2.1, tensorboard-plugin-wit-1.6.0.post3, TensorFlow-2.2.0, tensorflow-estimator-2.2.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1 + +### TensorFlow/2.1.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +absl-py-0.8.1, astor-0.8.0, cachetools-3.1.1, gast-0.2.2, google-auth-1.7.1, google-auth-oauthlib-0.4.1, google-pasta-0.1.8, grpcio-1.25.0, Keras-Applications-1.0.8, Keras-Preprocessing-1.1.0, Markdown-3.1.1, oauthlib-3.1.0, opt-einsum-3.1.0, pyasn1-modules-0.2.7, requests-oauthlib-1.3.0, rsa-4.0, tensorboard-2.1.0, TensorFlow-2.1.0, tensorflow-estimator-2.1.0, termcolor-1.1.0, Werkzeug-0.16.0, wrapt-1.11.2 + +### TensorFlow/1.15.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +absl-py-0.8.1, astor-0.8.0, gast-0.2.2, google-pasta-0.1.8, grpcio-1.25.0, Keras-Applications-1.0.8, Keras-Preprocessing-1.1.0, Markdown-3.1.1, opt-einsum-3.1.0, protobuf-3.10.0, tensorboard-1.15.0, TensorFlow-1.15.0, tensorflow-estimator-1.15.1, termcolor-1.1.0, Werkzeug-0.16.0, wrapt-1.11.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Theano.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Theano.md index 60e9837b62f3..cb049784659d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Theano.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Theano.md @@ -6,6 +6,10 @@ hide: Theano ====== + +Theano is a Python library that allows you to define, optimize,and evaluate mathematical expressions involving multi-dimensional arrays efficiently. + +https://deeplearning.net/software/theano # Available modules @@ -17,7 +21,7 @@ To start using Theano, load one of these modules using a `module load` command l module load Theano/1.1.2-intel-2021b-PyMC ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Tk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Tk.md index 737e964e1521..d1f665c68f5a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Tk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Tk.md @@ -6,6 +6,10 @@ hide: Tk == + +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages. + +https://www.tcl.tk/ # Available modules @@ -17,7 +21,7 @@ To start using Tk, load one of these modules using a `module load` command like: module load Tk/8.6.13-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Tkinter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Tkinter.md index 31083a19e7fc..dcd2217fc464 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Tkinter.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Tkinter.md @@ -6,6 +6,10 @@ hide: Tkinter ======= + +Tkinter module, built with the Python buildsystem + +https://python.org/ # Available modules @@ -17,7 +21,7 @@ To start using Tkinter, load one of these modules using a `module load` command module load Tkinter/3.11.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Togl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Togl.md index 3a30a8c55f75..5757c3f92455 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Togl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Togl.md @@ -6,6 +6,10 @@ hide: Togl ==== + +A Tcl/Tk widget for OpenGL rendering. + +https://sourceforge.net/projects/togl/ # Available modules @@ -17,7 +21,7 @@ To start using Togl, load one of these modules using a `module load` command lik module load Togl/2.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Tombo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Tombo.md index 51376ee3579c..6c8fbfa41446 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Tombo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Tombo.md @@ -6,6 +6,10 @@ hide: Tombo ===== + +Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data. + +https://github.com/nanoporetech/tombo # Available modules @@ -17,8 +21,15 @@ To start using Tombo, load one of these modules using a `module load` command li module load Tombo/1.5.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |Tombo/1.5.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### Tombo/1.5.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mappy-2.17, ont-tombo-1.5.1, pyfaidx-0.5.8 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TopHat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TopHat.md index 9a59ebd24d3c..a204eee5c99c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TopHat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TopHat.md @@ -6,6 +6,10 @@ hide: TopHat ====== + +TopHat is a fast splice junction mapper for RNA-Seq reads. + +http://ccb.jhu.edu/software/tophat/ # Available modules @@ -17,7 +21,7 @@ To start using TopHat, load one of these modules using a `module load` command l module load TopHat/2.1.2-iimpi-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TransDecoder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TransDecoder.md index 6a4184357c7f..f36382883d8c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TransDecoder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TransDecoder.md @@ -6,6 +6,10 @@ hide: TransDecoder ============ + +TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. + +https://github.com/TransDecoder/TransDecoder/wiki # Available modules @@ -17,7 +21,7 @@ To start using TransDecoder, load one of these modules using a `module load` com module load TransDecoder/5.5.0-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TranscriptClean.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TranscriptClean.md index 4e20be55b037..790337dd6faa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TranscriptClean.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TranscriptClean.md @@ -6,6 +6,10 @@ hide: TranscriptClean =============== + +TranscriptClean is a Python program that corrects mismatches, microindels,and noncanonical splice junctions in long reads that have been mapped to the genome. + +https://github.com/mortazavilab/TranscriptClean # Available modules @@ -17,7 +21,7 @@ To start using TranscriptClean, load one of these modules using a `module load` module load TranscriptClean/2.0.2-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Transformers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Transformers.md index 20272e2c8121..24dac9f7e4c6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Transformers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Transformers.md @@ -6,6 +6,10 @@ hide: Transformers ============ + +State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0 + +https://github.com/huggingface/transformers # Available modules @@ -17,7 +21,7 @@ To start using Transformers, load one of these modules using a `module load` com module load Transformers/4.30.2-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,28 @@ module load Transformers/4.30.2-foss-2022b |Transformers/4.24.0-foss-2022a|x|x|x|x|x|x| |Transformers/4.21.1-foss-2021b|x|x|x|-|x|x| |Transformers/4.20.1-foss-2021a|x|x|x|-|x|x| + + +### Transformers/4.30.2-foss-2022b + +This is a list of extensions included in the module: + +%(namelower)s-4.30.2, huggingface-hub-0.15.1, regex-2023.6.3, safetensors-0.3.1 + +### Transformers/4.24.0-foss-2022a + +This is a list of extensions included in the module: + +huggingface-hub-0.10.1, regex-2022.10.31, tokenizers-0.13.2, transformers-4.24.0 + +### Transformers/4.21.1-foss-2021b + +This is a list of extensions included in the module: + +huggingface-hub-0.8.1, regex-2022.7.25, sacremoses-0.0.53, tokenizers-0.12.1, transformers-4.21.1 + +### Transformers/4.20.1-foss-2021a + +This is a list of extensions included in the module: + +huggingface-hub-0.8.1, regex-2021.11.10, sacremoses-0.0.53, tokenizers-0.12.1, transformers-4.20.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TreeMix.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TreeMix.md index 0202c72bc67e..23f578bfa26c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TreeMix.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TreeMix.md @@ -6,6 +6,10 @@ hide: TreeMix ======= + +TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations. + +http://bitbucket.org/nygcresearch/treemix # Available modules @@ -17,7 +21,7 @@ To start using TreeMix, load one of these modules using a `module load` command module load TreeMix/1.13-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Trilinos.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Trilinos.md index 066f99745a14..ed6403833968 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Trilinos.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Trilinos.md @@ -6,6 +6,10 @@ hide: Trilinos ======== + +The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages. + +https://trilinos.org # Available modules @@ -17,7 +21,7 @@ To start using Trilinos, load one of these modules using a `module load` command module load Trilinos/12.12.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Trim_Galore.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Trim_Galore.md index 8d325b87c369..374957f3b7f0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Trim_Galore.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Trim_Galore.md @@ -6,6 +6,10 @@ hide: Trim_Galore =========== + +Trim Galore is a wrapper around Cutadapt and FastQC toconsistently apply adapter and quality trimming to FastQ files, with extrafunctionality for RRBS data. + +https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ # Available modules @@ -17,7 +21,7 @@ To start using Trim_Galore, load one of these modules using a `module load` comm module load Trim_Galore/0.6.6-GCC-10.2.0-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Trimmomatic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Trimmomatic.md index 145fe93ab0ec..7ba98a377d2e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Trimmomatic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Trimmomatic.md @@ -6,6 +6,10 @@ hide: Trimmomatic =========== + +Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line. + +http://www.usadellab.org/cms/?page=trimmomatic # Available modules @@ -17,7 +21,7 @@ To start using Trimmomatic, load one of these modules using a `module load` comm module load Trimmomatic/0.39-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Trinity.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Trinity.md index 6fab11db9a00..bfbb8ff1ffcc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Trinity.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Trinity.md @@ -6,6 +6,10 @@ hide: Trinity ======= + +Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads. + +https://trinityrnaseq.github.io # Available modules @@ -17,7 +21,7 @@ To start using Trinity, load one of these modules using a `module load` command module load Trinity/2.15.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Triton.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Triton.md index d25146d2b2e5..9d6aea2e97aa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Triton.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Triton.md @@ -6,6 +6,10 @@ hide: Triton ====== + +Triton is a language and compiler for parallel programming. It aims to provide aPython-based programming environment for productively writing custom DNN computekernels capable of running at maximal throughput on modern GPU hardware. + +https://triton-lang.org/ # Available modules @@ -17,7 +21,7 @@ To start using Triton, load one of these modules using a `module load` command l module load Triton/1.1.1-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Trycycler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Trycycler.md index 19091e33a1db..4bcba58a4556 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Trycycler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Trycycler.md @@ -6,6 +6,10 @@ hide: Trycycler ========= + +Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes. + +https://github.com/rrwick/Trycycler # Available modules @@ -17,7 +21,7 @@ To start using Trycycler, load one of these modules using a `module load` comman module load Trycycler/0.3.3-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TurboVNC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TurboVNC.md index 128a9fc0c31a..3deed11b3a73 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TurboVNC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TurboVNC.md @@ -6,6 +6,10 @@ hide: TurboVNC ======== + +TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads. + +https://www.turbovnc.org # Available modules @@ -17,7 +21,7 @@ To start using TurboVNC, load one of these modules using a `module load` command module load TurboVNC/2.2.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UCC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UCC.md index 0feeef89e35f..867b06c2a4e9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UCC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UCC.md @@ -6,6 +6,10 @@ hide: UCC === + +UCC (Unified Collective Communication) is a collectivecommunication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. + +https://www.openucx.org/ # Available modules @@ -17,7 +21,7 @@ To start using UCC, load one of these modules using a `module load` command like module load UCC/1.2.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UCLUST.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UCLUST.md index 493a8ab802f8..60bb98134df0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UCLUST.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UCLUST.md @@ -6,6 +6,10 @@ hide: UCLUST ====== + +UCLUST: Extreme high-speed sequence clustering, alignment and database search. + +http://www.drive5.com/usearch/index.html # Available modules @@ -17,7 +21,7 @@ To start using UCLUST, load one of these modules using a `module load` command l module load UCLUST/1.2.22q-i86linux64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UCX-CUDA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UCX-CUDA.md index 4cc7621057a5..c67082b7d8da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UCX-CUDA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UCX-CUDA.md @@ -6,6 +6,10 @@ hide: UCX-CUDA ======== + +Unified Communication XAn open-source production grade communication framework for data centricand high-performance applicationsThis module adds the UCX CUDA support. + +http://www.openucx.org/ # Available modules @@ -17,7 +21,7 @@ To start using UCX-CUDA, load one of these modules using a `module load` command module load UCX-CUDA/1.14.1-GCCcore-12.3.0-CUDA-12.1.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UCX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UCX.md index 5f9498cc91ad..b241794c8ee0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UCX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UCX.md @@ -6,6 +6,10 @@ hide: UCX === + +Unified Communication XAn open-source production grade communication framework for data centricand high-performance applications + +http://www.openucx.org/ # Available modules @@ -17,7 +21,7 @@ To start using UCX, load one of these modules using a `module load` command like module load UCX/1.15.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UDUNITS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UDUNITS.md index 26bacd47abec..5f259aeb7d94 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UDUNITS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UDUNITS.md @@ -6,6 +6,10 @@ hide: UDUNITS ======= + +UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement. + +https://www.unidata.ucar.edu/software/udunits/ # Available modules @@ -17,7 +21,7 @@ To start using UDUNITS, load one of these modules using a `module load` command module load UDUNITS/2.2.28-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UFL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UFL.md index e2829450344e..180aa300eab3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UFL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UFL.md @@ -6,6 +6,10 @@ hide: UFL === + +The Unified Form Language (UFL) is a domain specific language for declaration of finite element discretizations of variational forms. More precisely, it defines a flexible interface for choosing finite element spaces and defining expressions for weak forms in a notation close to mathematical notation. + +https://bitbucket.org/fenics-project/ufl # Available modules @@ -17,7 +21,7 @@ To start using UFL, load one of these modules using a `module load` command like module load UFL/2019.1.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UMI-tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UMI-tools.md index 08c7a85a642f..0e919d9560c8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UMI-tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UMI-tools.md @@ -6,6 +6,10 @@ hide: UMI-tools ========= + +Tools for handling Unique Molecular Identifiers in NGS data sets + +https://umi-tools.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using UMI-tools, load one of these modules using a `module load` comman module load UMI-tools/1.0.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |UMI-tools/1.0.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### UMI-tools/1.0.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +regex-2020.4.4, UMI-tools-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UQTk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UQTk.md index 944ffd0edb01..3c3bc398c7ff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UQTk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UQTk.md @@ -6,6 +6,10 @@ hide: UQTk ==== + +The UQ Toolkit (UQTk) is a collection of libraries and tools for the quantification of uncertainty in numerical model predictions. + +https://www.sandia.gov/UQToolkit/ # Available modules @@ -17,7 +21,7 @@ To start using UQTk, load one of these modules using a `module load` command lik module load UQTk/3.1.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/USEARCH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/USEARCH.md index db4484b7edf5..0d154f366964 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/USEARCH.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/USEARCH.md @@ -6,6 +6,10 @@ hide: USEARCH ======= + +USEARCH is a unique sequence analysis tool which offers search and clustering algorithms that are often orders of magnitude faster than BLAST. + +https://www.drive5.com/usearch/index.html # Available modules @@ -17,7 +21,7 @@ To start using USEARCH, load one of these modules using a `module load` command module load USEARCH/11.0.667-i86linux32 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UnZip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UnZip.md index 5787c5cf548b..b45014760fe8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UnZip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UnZip.md @@ -6,6 +6,10 @@ hide: UnZip ===== + +UnZip is an extraction utility for archives compressedin .zip format (also called "zipfiles"). Although highly compatible bothwith PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP'sown Zip program, our primary objectives have been portability andnon-MSDOS functionality. + +http://www.info-zip.org/UnZip.html # Available modules @@ -17,7 +21,7 @@ To start using UnZip, load one of these modules using a `module load` command li module load UnZip/6.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UniFrac.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UniFrac.md index ba4e4aae087e..78253adc4bef 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UniFrac.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UniFrac.md @@ -6,6 +6,10 @@ hide: UniFrac ======= + +UniFrac is the de facto repository for high-performance phylogenetic diversitycalculations. The methods in this repository are based on an implementation ofthe Strided State UniFrac algorithm which is faster, and uses less memory thanFast UniFrac. Strided State UniFrac supports Unweighted UniFrac, WeightedUniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac, inboth double and single precision (fp32). This repository also includes StackedFaith (manuscript in preparation), a method for calculating Faith's PD that isfaster and uses less memory than the Fast UniFrac-based referenceimplementation. + +https://github.com/biocore/unifrac-binaries # Available modules @@ -17,7 +21,7 @@ To start using UniFrac, load one of these modules using a `module load` command module load UniFrac/1.3.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Unicycler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Unicycler.md index 8417428ffd3e..2ae7f139d89b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Unicycler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Unicycler.md @@ -6,6 +6,10 @@ hide: Unicycler ========= + +Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. + +https://github.com/rrwick/Unicycler # Available modules @@ -17,7 +21,7 @@ To start using Unicycler, load one of these modules using a `module load` comman module load Unicycler/0.4.8-gompi-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Unidecode.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Unidecode.md index 8f40ecbe9e80..e418c60e7c05 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Unidecode.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Unidecode.md @@ -6,6 +6,10 @@ hide: Unidecode ========= + +Python library for lossy ASCII transliterations of Unicode text (port of Text::Unidecode Perl module) + +https://github.com/avian2/unidecode # Available modules @@ -17,7 +21,7 @@ To start using Unidecode, load one of these modules using a `module load` comman module load Unidecode/1.3.6-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VASP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VASP.md index cd2de2536606..1f2ce389a8cd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VASP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VASP.md @@ -6,6 +6,10 @@ hide: VASP ==== + +The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scalematerials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics,from first principles. + +http://www.vasp.at # Available modules @@ -17,7 +21,7 @@ To start using VASP, load one of these modules using a `module load` command lik module load VASP/6.4.2-gomkl-2023a-VASPsol-20210413-vtst-197-Wannier90-3.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VBZ-Compression.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VBZ-Compression.md index 4f329f592fdb..1102eec27561 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VBZ-Compression.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VBZ-Compression.md @@ -6,6 +6,10 @@ hide: VBZ-Compression =============== + +VBZ compression HDF5 plugin for nanopolish + +https://github.com/nanoporetech/vbz_compression # Available modules @@ -17,7 +21,7 @@ To start using VBZ-Compression, load one of these modules using a `module load` module load VBZ-Compression/1.0.3-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VCFtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VCFtools.md index 5a39b8bbac5a..557df01cd662 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VCFtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VCFtools.md @@ -6,6 +6,10 @@ hide: VCFtools ======== + +The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files. + +https://vcftools.github.io # Available modules @@ -17,7 +21,7 @@ To start using VCFtools, load one of these modules using a `module load` command module load VCFtools/0.1.16-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VEP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VEP.md index f9b9413bdfcc..17401dfb48e2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VEP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VEP.md @@ -6,6 +6,10 @@ hide: VEP === + +Variant Effect Predictor (VEP) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions. Includes EnsEMBL-XS, which provides pre-compiled replacements for frequently used routines in VEP. + +https://www.ensembl.org/info/docs/tools/vep # Available modules @@ -17,9 +21,22 @@ To start using VEP, load one of these modules using a `module load` command like module load VEP/107-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |VEP/107-GCC-11.3.0|x|x|x|-|x|x| |VEP/105-GCC-11.2.0|x|x|x|-|x|x| + + +### VEP/107-GCC-11.3.0 + +This is a list of extensions included in the module: + +Bio::EnsEMBL::XS-2.3.2 + +### VEP/105-GCC-11.2.0 + +This is a list of extensions included in the module: + +Bio::EnsEMBL::XS-2.3.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VESTA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VESTA.md index 07a95d1b5196..b94ecd52a26b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VESTA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VESTA.md @@ -6,6 +6,10 @@ hide: VESTA ===== + +VESTA is a 3D visualization program for structured models, volumetric data such as electron/nuclear densities, and crystal morphologies. + +http://www.jp-minerals.org/vesta # Available modules @@ -17,7 +21,7 @@ To start using VESTA, load one of these modules using a `module load` command li module load VESTA/3.5.8-gtk3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VMD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VMD.md index 75b6c226bd0d..729c0f2c1ad6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VMD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VMD.md @@ -6,6 +6,10 @@ hide: VMD === + +VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. + +https://www.ks.uiuc.edu/Research/vmd # Available modules @@ -17,7 +21,7 @@ To start using VMD, load one of these modules using a `module load` command like module load VMD/1.9.4a51-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VMTK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VMTK.md index ae78e604d069..ef4f0fe9f01a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VMTK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VMTK.md @@ -6,6 +6,10 @@ hide: VMTK ==== + +vmtk is a collection of libraries and toolsfor 3D reconstruction, geometric analysis, mesh generation andsurface data analysis for image-based modeling of blood vessels. + +https://vmtk.org # Available modules @@ -17,7 +21,7 @@ To start using VMTK, load one of these modules using a `module load` command lik module load VMTK/1.4.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VSCode.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VSCode.md index c3436fa7763c..8bc35f8c5fc4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VSCode.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VSCode.md @@ -6,6 +6,10 @@ hide: VSCode ====== + +Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos. + +https://code.visualstudio.com/ # Available modules @@ -17,7 +21,7 @@ To start using VSCode, load one of these modules using a `module load` command l module load VSCode/1.85.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VSEARCH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VSEARCH.md index 442460d7f884..829763edc886 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VSEARCH.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VSEARCH.md @@ -6,6 +6,10 @@ hide: VSEARCH ======= + +VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads. + +https://github.com/torognes/vsearch # Available modules @@ -17,7 +21,7 @@ To start using VSEARCH, load one of these modules using a `module load` command module load VSEARCH/2.22.1-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VTK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VTK.md index 408ccc11667f..340dc1a92d86 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VTK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VTK.md @@ -6,6 +6,10 @@ hide: VTK === + +The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation. + +https://www.vtk.org # Available modules @@ -17,7 +21,7 @@ To start using VTK, load one of these modules using a `module load` command like module load VTK/9.2.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VTune.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VTune.md index 76a3b4fff4d2..300d79753ee1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VTune.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VTune.md @@ -6,6 +6,10 @@ hide: VTune ===== + +Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java. + +http://software.intel.com/en-us/intel-vtune-amplifier-xe # Available modules @@ -17,7 +21,7 @@ To start using VTune, load one of these modules using a `module load` command li module load VTune/2019_update2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Vala.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Vala.md index c935e0624dcb..8fc33cdaa2ca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Vala.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Vala.md @@ -6,6 +6,10 @@ hide: Vala ==== + +Vala is a programming language using modern high level abstractions without imposing additional runtimerequirements and without using a different ABI compared to applications and libraries written in C. + +https://wiki.gnome.org/Projects/Vala # Available modules @@ -17,7 +21,7 @@ To start using Vala, load one of these modules using a `module load` command lik module load Vala/0.52.4-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Valgrind.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Valgrind.md index db721316cc65..a36316ad417e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Valgrind.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Valgrind.md @@ -6,6 +6,10 @@ hide: Valgrind ======== + +Valgrind: Debugging and profiling tools + +https://valgrind.org # Available modules @@ -17,7 +21,7 @@ To start using Valgrind, load one of these modules using a `module load` command module load Valgrind/3.20.0-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VarScan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VarScan.md index 3e5ef944911d..60ba26dc7ac9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VarScan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VarScan.md @@ -6,6 +6,10 @@ hide: VarScan ======= + +Variant calling and somatic mutation/CNV detection for next-generation sequencing data + +https://github.com/dkoboldt/varscan # Available modules @@ -17,7 +21,7 @@ To start using VarScan, load one of these modules using a `module load` command module load VarScan/2.4.4-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Velvet.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Velvet.md index 33cba03340c3..d8d307b7f5a5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Velvet.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Velvet.md @@ -6,6 +6,10 @@ hide: Velvet ====== + +Sequence assembler for very short reads + +https://www.ebi.ac.uk/~zerbino/velvet/ # Available modules @@ -17,7 +21,7 @@ To start using Velvet, load one of these modules using a `module load` command l module load Velvet/1.2.10-foss-2023a-mt-kmer_191 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VirSorter2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VirSorter2.md index 5571ee108ea3..1a2b6b268c5a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VirSorter2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VirSorter2.md @@ -6,6 +6,10 @@ hide: VirSorter2 ========== + +VirSorter2 applies a multi-classifier, expert-guided approach to detect diverse DNA and RNA virus genomes. + +https://github.com/jiarong/VirSorter2 # Available modules @@ -17,8 +21,15 @@ To start using VirSorter2, load one of these modules using a `module load` comma module load VirSorter2/2.2.4-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |VirSorter2/2.2.4-foss-2022a|x|x|x|x|x|x| + + +### VirSorter2/2.2.4-foss-2022a + +This is a list of extensions included in the module: + +VirSorter2-2.2.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VisPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VisPy.md index c8e2d57dedae..bca6c86fb47e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VisPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VisPy.md @@ -6,6 +6,10 @@ hide: VisPy ===== + +VisPy is a high-performance interactive 2D/3D data visualization library leveraging the computational power of modern Graphics Processing Units (GPUs) through the OpenGL library to display very large datasets. + +https://vispy.org # Available modules @@ -17,8 +21,15 @@ To start using VisPy, load one of these modules using a `module load` command li module load VisPy/0.12.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |VisPy/0.12.2-foss-2022a|x|x|x|x|x|x| + + +### VisPy/0.12.2-foss-2022a + +This is a list of extensions included in the module: + +freetype_py-2.4.0, hsluv-5.0.3, vispy-0.12.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Voro++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Voro++.md index f5e9a1aaabfb..ad780211be0f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Voro++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Voro++.md @@ -6,6 +6,10 @@ hide: Voro++ ====== + +Voro++ is a software library for carrying out three-dimensional computations of the Voronoitessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations,computing the Voronoi cell for each particle individually. It is particularly well-suited for applications thatrely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be usedto analyze a system of particles. + +http://math.lbl.gov/voro++/ # Available modules @@ -17,7 +21,7 @@ To start using Voro++, load one of these modules using a `module load` command l module load Voro++/0.4.6-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WFA2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WFA2.md index 225b2342b0c1..9e5be770a25a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WFA2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WFA2.md @@ -6,6 +6,10 @@ hide: WFA2 ==== + +The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm that takes advantage of homologous regions between the sequences to accelerate the alignment process. + +https://github.com/smarco/WFA2-lib # Available modules @@ -17,7 +21,7 @@ To start using WFA2, load one of these modules using a `module load` command lik module load WFA2/2.3.3-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WHAM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WHAM.md index e84482ee4bb0..741962cbc542 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WHAM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WHAM.md @@ -6,6 +6,10 @@ hide: WHAM ==== + +An implementation of WHAM: the Weighted Histogram Analysis Method + +http://membrane.urmc.rochester.edu/?page_id=126 # Available modules @@ -17,7 +21,7 @@ To start using WHAM, load one of these modules using a `module load` command lik module load WHAM/2.0.10.2-intel-2020a-kj_mol ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WIEN2k.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WIEN2k.md index c0acde09615c..32f0f57039b3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WIEN2k.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WIEN2k.md @@ -6,6 +6,10 @@ hide: WIEN2k ====== + +The program package WIEN2k allows to perform electronic structure calculations of solidsusing density functional theory (DFT). It is based on the full-potential (linearized) augmented plane-wave((L)APW) + local orbitals (lo) method, one among the most accurate schemes for band structure calculations.WIEN2k is an all-electron scheme including relativistic effects and has many features. + +http://www.wien2k.at/ # Available modules @@ -17,7 +21,7 @@ To start using WIEN2k, load one of these modules using a `module load` command l module load WIEN2k/21.1-intel-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WPS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WPS.md index 66c091f22782..0776ad868b7e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WPS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WPS.md @@ -6,6 +6,10 @@ hide: WPS === + +WRF Preprocessing System (WPS) for WRF. The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. + +http://www.wrf-model.org # Available modules @@ -17,7 +21,7 @@ To start using WPS, load one of these modules using a `module load` command like module load WPS/4.1-intel-2019b-dmpar ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WRF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WRF.md index 0d99cb1e74b0..4c1751172f19 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WRF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WRF.md @@ -6,6 +6,10 @@ hide: WRF === + +The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. + +http://www.wrf-model.org # Available modules @@ -17,7 +21,7 @@ To start using WRF, load one of these modules using a `module load` command like module load WRF/4.1.3-intel-2019b-dmpar ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Wannier90.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Wannier90.md index 4e231171a353..9582ca1b81c2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Wannier90.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Wannier90.md @@ -6,6 +6,10 @@ hide: Wannier90 ========= + +A tool for obtaining maximally-localised Wannier functions + +http://www.wannier.org # Available modules @@ -17,7 +21,7 @@ To start using Wannier90, load one of these modules using a `module load` comman module load Wannier90/3.1.0-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Wayland.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Wayland.md index a4d72531b32f..23b2c8063434 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Wayland.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Wayland.md @@ -6,6 +6,10 @@ hide: Wayland ======= + +Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers. + +https://wayland.freedesktop.org/ # Available modules @@ -17,7 +21,7 @@ To start using Wayland, load one of these modules using a `module load` command module load Wayland/1.22.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Waylandpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Waylandpp.md index 1131ed703837..4040db80c12b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Waylandpp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Waylandpp.md @@ -6,6 +6,10 @@ hide: Waylandpp ========= + +Wayland is an object oriented display protocol, which features request and events. Requests can be seen as method calls on certain objects, whereas events can be seen as signals of an object. This makes the Wayland protocol a perfect candidate for a C++ binding.The goal of this library is to create such a C++ binding for Wayland using the most modern C++ technology currently available, providing an easy to use C++ API to Wayland. + +https://github.com/NilsBrause/waylandpp # Available modules @@ -17,7 +21,7 @@ To start using Waylandpp, load one of these modules using a `module load` comman module load Waylandpp/1.0.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WebKitGTK+.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WebKitGTK+.md index e1f8fd45c55e..959e72a7b7a5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WebKitGTK+.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WebKitGTK+.md @@ -6,6 +6,10 @@ hide: WebKitGTK+ ========== + +WebKitGTK+ is a full-featured port of the WebKitrendering engine, suitable for projects requiring any kind of webintegration, from hybrid HTML/CSS applications to full-fledged webbrowsers. It offers WebKit's full functionality and is useful in a widerange of systems from desktop computers to embedded systems like phones,tablets, and televisions. + +https://webkitgtk.org/ # Available modules @@ -17,7 +21,7 @@ To start using WebKitGTK+, load one of these modules using a `module load` comma module load WebKitGTK+/2.37.1-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WhatsHap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WhatsHap.md index bbefec229df3..40f941ca33eb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WhatsHap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WhatsHap.md @@ -6,6 +6,10 @@ hide: WhatsHap ======== + +WhatsHap is a software for phasing genomic variants using DNAsequencing reads, also called read-based phasing or haplotype assembly. It isespecially suitable for long reads, but works also well with short reads. + +https://whatshap.readthedocs.io # Available modules @@ -17,10 +21,29 @@ To start using WhatsHap, load one of these modules using a `module load` command module load WhatsHap/1.7-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |WhatsHap/1.7-foss-2022a|x|x|x|x|x|x| |WhatsHap/1.4-foss-2021b|x|x|x|-|x|x| |WhatsHap/1.1-foss-2021a|x|x|x|-|x|x| + + +### WhatsHap/1.7-foss-2022a + +This is a list of extensions included in the module: + +pulp-2.7.0, WhatsHap-1.7, xopen-1.5.0 + +### WhatsHap/1.4-foss-2021b + +This is a list of extensions included in the module: + +WhatsHap-1.4, xopen-1.5.0 + +### WhatsHap/1.1-foss-2021a + +This is a list of extensions included in the module: + +WhatsHap-1.1, xopen-1.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Winnowmap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Winnowmap.md index 07904db7e5a7..f54cd98c5056 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Winnowmap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Winnowmap.md @@ -6,6 +6,10 @@ hide: Winnowmap ========= + +Winnowmap is a long-read mapping algorithm, and a result of our exploration into superior minimizer sampling techniques. + +https://github.com/marbl/Winnowmap # Available modules @@ -17,7 +21,7 @@ To start using Winnowmap, load one of these modules using a `module load` comman module load Winnowmap/1.0-GCC-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WisecondorX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WisecondorX.md index d64a6def5c54..6806db039939 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WisecondorX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WisecondorX.md @@ -6,6 +6,10 @@ hide: WisecondorX =========== + +WisecondorX -- an evolved WISECONDOR + +https://github.com/CenterForMedicalGeneticsGhent/WisecondorX # Available modules @@ -17,7 +21,7 @@ To start using WisecondorX, load one of these modules using a `module load` comm module load WisecondorX/1.1.6-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/X11.md b/mkdocs/docs/HPC/only/gent/available_software/detail/X11.md index 7cdf2f996966..99fad228d742 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/X11.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/X11.md @@ -6,6 +6,10 @@ hide: X11 === + +The X Window System (X11) is a windowing system for bitmap displays + +https://www.x.org # Available modules @@ -17,7 +21,7 @@ To start using X11, load one of these modules using a `module load` command like module load X11/20230603-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XCFun.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XCFun.md index 0ffbfce43bad..8a9bbd9f7e57 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XCFun.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XCFun.md @@ -6,6 +6,10 @@ hide: XCFun ===== + +Arbitrary order exchange-correlation functional library + +https://xcfun.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using XCFun, load one of these modules using a `module load` command li module load XCFun/2.1.1-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XCrySDen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XCrySDen.md index 7154ecb32538..2963033712da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XCrySDen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XCrySDen.md @@ -6,6 +6,10 @@ hide: XCrySDen ======== + +XCrySDen is a crystalline and molecular structure visualisation program aiming at display of isosurfacesand contours, which can be superimposed on crystalline structures and interactively rotated and manipulated.It also possesses some tools for analysis of properties in reciprocal space such as interactive selectionof k-paths in the Brillouin zone for the band-structure plots, and visualisation of Fermi surfaces. + +http://www.xcrysden.org/ # Available modules @@ -17,7 +21,7 @@ To start using XCrySDen, load one of these modules using a `module load` command module load XCrySDen/1.6.2-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XGBoost.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XGBoost.md index 6a1a826b9a95..38c0f82999d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XGBoost.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XGBoost.md @@ -6,6 +6,10 @@ hide: XGBoost ======= + +XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable. + +https://github.com/dmlc/xgboost # Available modules @@ -17,7 +21,7 @@ To start using XGBoost, load one of these modules using a `module load` command module load XGBoost/1.7.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XML-Compile.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XML-Compile.md index 6c09e70addec..23ae3634e861 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XML-Compile.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XML-Compile.md @@ -6,6 +6,10 @@ hide: XML-Compile =========== + +Perl module for compilation based XML processing + +https://metacpan.org/pod/XML::Compile # Available modules @@ -17,9 +21,22 @@ To start using XML-Compile, load one of these modules using a `module load` comm module load XML-Compile/1.63-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |XML-Compile/1.63-GCCcore-12.2.0|x|x|x|x|x|x| |XML-Compile/1.63-GCCcore-11.2.0|x|x|x|-|x|x| + + +### XML-Compile/1.63-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +XML::Compile-1.63, XML::Compile::Cache-1.06, XML::Compile::SOAP-3.28, XML::Compile::WSDL11-3.08, XML::LibXML::Simple-1.01 + +### XML-Compile/1.63-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +XML::Compile-1.63, XML::Compile::Cache-1.06, XML::Compile::SOAP-3.27, XML::Compile::WSDL11-3.08, XML::LibXML::Simple-1.01 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XML-LibXML.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XML-LibXML.md index 198eb8bf0bff..5d3bc475776a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XML-LibXML.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XML-LibXML.md @@ -6,6 +6,10 @@ hide: XML-LibXML ========== + +Perl binding for libxml2 + +https://metacpan.org/pod/distribution/XML-LibXML/LibXML.pod # Available modules @@ -17,7 +21,7 @@ To start using XML-LibXML, load one of these modules using a `module load` comma module load XML-LibXML/2.0208-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -27,3 +31,40 @@ module load XML-LibXML/2.0208-GCCcore-12.2.0 |XML-LibXML/2.0206-GCCcore-10.2.0|-|x|x|x|x|x| |XML-LibXML/2.0205-GCCcore-9.3.0|-|x|x|-|x|x| |XML-LibXML/2.0201-GCCcore-8.3.0|-|x|x|-|x|x| + + +### XML-LibXML/2.0208-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +Alien::Base-2.80, Alien::Build::Plugin::Download::GitLab-0.01, Alien::Libxml2-0.19, File::chdir-0.1011, XML::LibXML-2.0208 + +### XML-LibXML/2.0207-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +Alien::Base-2.68, Alien::Libxml2-0.17, File::chdir-0.1011, XML::LibXML-2.0207 + +### XML-LibXML/2.0207-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +Alien::Base-2.46, Alien::Libxml2-0.17, File::chdir-0.1010, XML::LibXML-2.0207 + +### XML-LibXML/2.0206-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +Alien::Base-2.38, Alien::Libxml2-0.17, File::chdir-0.1010, XML::LibXML-2.0206 + +### XML-LibXML/2.0205-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +Alien::Base-2.23, Alien::Libxml2-0.16, File::chdir-0.1010, XML::LibXML-2.0205 + +### XML-LibXML/2.0201-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +Alien::Base-1.86, Alien::Libxml2-0.09, File::chdir-0.1010, XML::LibXML-2.0201 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XZ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XZ.md index 8b4e518a0a26..f01a2de6f7a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XZ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XZ.md @@ -6,6 +6,10 @@ hide: XZ == + +xz: XZ utilities + +https://tukaani.org/xz/ # Available modules @@ -17,7 +21,7 @@ To start using XZ, load one of these modules using a `module load` command like: module load XZ/5.4.4-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Xerces-C++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Xerces-C++.md index 65f6c3134b18..fe2578130663 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Xerces-C++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Xerces-C++.md @@ -6,6 +6,10 @@ hide: Xerces-C++ ========== + +Xerces-C++ is a validating XML parser written in a portablesubset of C++. Xerces-C++ makes it easy to give your application the ability toread and write XML data. A shared library is provided for parsing, generating,manipulating, and validating XML documents using the DOM, SAX, and SAX2APIs. + +https://xerces.apache.org/xerces-c/ # Available modules @@ -17,7 +21,7 @@ To start using Xerces-C++, load one of these modules using a `module load` comma module load Xerces-C++/3.2.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XlsxWriter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XlsxWriter.md index df43acd39939..f8cfeb6f8620 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XlsxWriter.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XlsxWriter.md @@ -6,6 +6,10 @@ hide: XlsxWriter ========== + +A Python module for creating Excel XLSX files + +https://xlsxwriter.readthedocs.io/ # Available modules @@ -17,7 +21,7 @@ To start using XlsxWriter, load one of these modules using a `module load` comma module load XlsxWriter/3.1.9-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Xvfb.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Xvfb.md index f7ab4d98296c..5c13bf860367 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Xvfb.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Xvfb.md @@ -6,6 +6,10 @@ hide: Xvfb ==== + +Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory. + +https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml # Available modules @@ -17,7 +21,7 @@ To start using Xvfb, load one of these modules using a `module load` command lik module load Xvfb/21.1.8-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/YACS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/YACS.md index 4903e48e5fd2..ebe37f687aea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/YACS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/YACS.md @@ -6,6 +6,10 @@ hide: YACS ==== + +YACS was created as a lightweight library to define andmanage system configurations, such as those commonly found in softwaredesigned for scientific experimentation. These "configurations"typically cover concepts like hyperparameters used in training a machinelearning model or configurable model hyperparameters, such as the depthof a convolutional neural network. + +https://github.com/rbgirshick/yacs # Available modules @@ -17,7 +21,7 @@ To start using YACS, load one of these modules using a `module load` command lik module load YACS/0.1.8-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/YANK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/YANK.md index dbb592f536ef..598b0e0bbe98 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/YANK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/YANK.md @@ -6,6 +6,10 @@ hide: YANK ==== + +A GPU-accelerated Python framework for exploring algorithms for alchemical free energy calculations + +http://getyank.org/ # Available modules @@ -17,8 +21,15 @@ To start using YANK, load one of these modules using a `module load` command lik module load YANK/0.25.2-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |YANK/0.25.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### YANK/0.25.2-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +Cerberus-1.3.2, clusterutils-0.3.1, docopt-0.6.2, latexcodec-2.0.1, lxml-4.6.1, mpiplus-0.0.1, numpydoc-1.1.0, openmoltools-0.8.7, oset-0.1.3, pdbfixer-1.6, pybtex-0.23.0, pybtex-docutils-0.2.2, six-1.15.0, sphinxcontrib-bibtex-1.0.0, YANK-0.25.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/YAXT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/YAXT.md index 652036adeee2..1f1b15905229 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/YAXT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/YAXT.md @@ -6,6 +6,10 @@ hide: YAXT ==== + +Yet Another eXchange Tool + +https://www.dkrz.de/redmine/projects/yaxt # Available modules @@ -17,7 +21,7 @@ To start using YAXT, load one of these modules using a `module load` command lik module load YAXT/0.9.1-gompi-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Yambo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Yambo.md index f5cbbb141235..d0877b09c0d2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Yambo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Yambo.md @@ -6,6 +6,10 @@ hide: Yambo ===== + +Yambo is a FORTRAN/C code for Many-Body calculations in solid state and molecular physics. Yambo relies on the Kohn-Sham wavefunctions generated by two DFT public codes: abinit, and PWscf. + +http://www.yambo-code.org # Available modules @@ -17,7 +21,7 @@ To start using Yambo, load one of these modules using a `module load` command li module load Yambo/5.1.2-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Yasm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Yasm.md index f9ece29cde6b..65fdf63ec2d7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Yasm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Yasm.md @@ -6,6 +6,10 @@ hide: Yasm ==== + +Yasm: Complete rewrite of the NASM assembler with BSD license + +https://www.tortall.net/projects/yasm/ # Available modules @@ -17,7 +21,7 @@ To start using Yasm, load one of these modules using a `module load` command lik module load Yasm/1.3.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md index 3e1507571257..f77b9a395cb9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md @@ -6,6 +6,10 @@ hide: Z3 == + +Z3 is a theorem prover from Microsoft Research. + +https://github.com/Z3Prover/z3 # Available modules @@ -17,7 +21,7 @@ To start using Z3, load one of these modules using a `module load` command like: module load Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,10 @@ module load Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3 |Z3/4.8.11-GCCcore-10.3.0|x|x|x|x|x|x| |Z3/4.8.10-GCCcore-10.2.0|-|x|x|x|x|x| |Z3/4.8.9-GCCcore-9.3.0|-|-|x|-|x|x| + + +### Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3 + +This is a list of extensions included in the module: + +z3-solver-4.12.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Zeo++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Zeo++.md index 4e7d04b65199..c2398c9aadcd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Zeo++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Zeo++.md @@ -6,6 +6,10 @@ hide: Zeo++ ===== + +Zeo++ is a software package for analysis of crystalline porous materials. Zeo++ can be used to perform geometry-based analysis of structure and topology of the void space inside a material, to assemble or alternate structures as well as to generate structure representations to be used in structure similarity calculations. Zeo++ can be used to either analyze a single structure or perform high-throughput analysis of a large database. + +https://www.zeoplusplus.org/ # Available modules @@ -17,7 +21,7 @@ To start using Zeo++, load one of these modules using a `module load` command li module load Zeo++/0.3-intel-compilers-2023.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ZeroMQ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ZeroMQ.md index ea25740df34d..fc26294628aa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ZeroMQ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ZeroMQ.md @@ -6,6 +6,10 @@ hide: ZeroMQ ====== + +ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems. + +https://www.zeromq.org/ # Available modules @@ -17,7 +21,7 @@ To start using ZeroMQ, load one of these modules using a `module load` command l module load ZeroMQ/4.3.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Zip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Zip.md index 088e6214f62e..3b3dc578f4fd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Zip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Zip.md @@ -6,6 +6,10 @@ hide: Zip === + +Zip is a compression and file packaging/archive utility.Although highly compatible both with PKWARE's PKZIP and PKUNZIPutilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectiveshave been portability and other-than-MSDOS functionality + +http://www.info-zip.org/Zip.html # Available modules @@ -17,7 +21,7 @@ To start using Zip, load one of these modules using a `module load` command like module load Zip/3.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Zopfli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Zopfli.md index c647989d8b13..4a1087dabd8e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Zopfli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Zopfli.md @@ -6,6 +6,10 @@ hide: Zopfli ====== + +Zopfli Compression Algorithm is a compression library programmed in C to performvery good, but slow, deflate or zlib compression. + +https://github.com/google/zopfli # Available modules @@ -17,7 +21,7 @@ To start using Zopfli, load one of these modules using a `module load` command l module load Zopfli/1.0.3-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/adjustText.md b/mkdocs/docs/HPC/only/gent/available_software/detail/adjustText.md index fe97df4fcf15..347746cde1f0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/adjustText.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/adjustText.md @@ -6,6 +6,10 @@ hide: adjustText ========== + +A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps. + +https://github.com/Phlya/adjustText # Available modules @@ -17,7 +21,7 @@ To start using adjustText, load one of these modules using a `module load` comma module load adjustText/0.7.3-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/aiohttp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/aiohttp.md index 56424bb5aae0..18cea00f228d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/aiohttp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/aiohttp.md @@ -6,6 +6,10 @@ hide: aiohttp ======= + +Asynchronous HTTP client/server framework for asyncio and Python. + +https://github.com/aio-libs/aiohttp # Available modules @@ -17,7 +21,7 @@ To start using aiohttp, load one of these modules using a `module load` command module load aiohttp/3.8.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,28 @@ module load aiohttp/3.8.5-GCCcore-12.3.0 |aiohttp/3.8.5-GCCcore-12.2.0|x|x|x|x|x|x| |aiohttp/3.8.3-GCCcore-11.3.0|x|x|x|x|x|x| |aiohttp/3.8.1-GCCcore-11.2.0|x|x|x|-|x|x| + + +### aiohttp/3.8.5-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +aiohttp-3.8.5, aiosignal-1.3.1, async-timeout-4.0.2, frozenlist-1.4.0, multidict-6.0.4, yarl-1.9.2 + +### aiohttp/3.8.5-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +aiohttp-3.8.5, aioredis-2.0.1, aiosignal-1.3.1, async-timeout-4.0.2, frozenlist-1.4.0, multidict-6.0.4, yarl-1.9.2 + +### aiohttp/3.8.3-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +aiohttp-3.8.3, aiohttp-jinja2-1.5, aiohttp-session-2.12.0, aioredis-2.0.1, aiosignal-1.3.1, aiosignal-1.3.1, async-timeout-4.0.2, frozenlist-1.3.3, hiredis-2.0.0, multidict-6.0.2, yarl-1.8.1 + +### aiohttp/3.8.1-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +aiohttp-3.8.1, aiohttp-jinja2-1.5, aioredis-2.0.1, aiosignal-1.2.0, aiosignal-1.2.0, async-timeout-4.0.2, frozenlist-1.2.0, hiredis-2.0.0, multidict-5.2.0, yarl-1.7.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/alevin-fry.md b/mkdocs/docs/HPC/only/gent/available_software/detail/alevin-fry.md index 5919a96be66b..dd18cb532aea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/alevin-fry.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/alevin-fry.md @@ -6,6 +6,10 @@ hide: alevin-fry ========== + +alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding. + +https://github.com/COMBINE-lab/alevin-fry # Available modules @@ -17,7 +21,7 @@ To start using alevin-fry, load one of these modules using a `module load` comma module load alevin-fry/0.4.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/alleleCount.md b/mkdocs/docs/HPC/only/gent/available_software/detail/alleleCount.md index d5dbc0cb260f..bd8aca90336d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/alleleCount.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/alleleCount.md @@ -6,6 +6,10 @@ hide: alleleCount =========== + +The alleleCount package primarily exists to prevent code duplicationbetween some other projects, specifically AscatNGS and Battenberg. As of v4 the perl code wraps the C implementation of allele counting code for BAM/CRAM processing. + +http://cancerit.github.io/alleleCount/ # Available modules @@ -17,9 +21,22 @@ To start using alleleCount, load one of these modules using a `module load` comm module load alleleCount/4.3.0-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |alleleCount/4.3.0-GCC-12.2.0|x|x|x|x|x|x| |alleleCount/4.2.1-GCC-11.3.0|x|x|x|x|x|x| + + +### alleleCount/4.3.0-GCC-12.2.0 + +This is a list of extensions included in the module: + +Const::Fast-0.014, Devel::Cover-1.40, Devel::Symdump-2.18, Pod::Coverage-0.23, Pod::Parser-1.66 + +### alleleCount/4.2.1-GCC-11.3.0 + +This is a list of extensions included in the module: + +Const::Fast-0.014, Devel::Cover-1.40, Devel::Symdump-2.18, Pod::Coverage-0.23, Pod::Parser-1.66 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/alleleIntegrator.md b/mkdocs/docs/HPC/only/gent/available_software/detail/alleleIntegrator.md index bb6a5f1ebd3b..662385fa13aa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/alleleIntegrator.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/alleleIntegrator.md @@ -6,6 +6,10 @@ hide: alleleIntegrator ================ + +R package to generate allele specific counts for scRNA data and use it to identify cancer cells + +https://github.com/constantAmateur/alleleIntegrator # Available modules @@ -17,9 +21,22 @@ To start using alleleIntegrator, load one of these modules using a `module load` module load alleleIntegrator/0.8.8-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |alleleIntegrator/0.8.8-foss-2022b-R-4.2.2|x|x|x|x|x|x| |alleleIntegrator/0.8.8-foss-2022a-R-4.2.1|x|x|x|x|x|x| + + +### alleleIntegrator/0.8.8-foss-2022b-R-4.2.2 + +This is a list of extensions included in the module: + +alleleIntegrator-0.8.8, grr-0.9.5, Matrix.utils-0.9.8 + +### alleleIntegrator/0.8.8-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +alleleIntegrator-0.8.8, grr-0.9.5, Matrix.utils-0.9.8 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/alsa-lib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/alsa-lib.md index e6465a435bb3..c5ea8a076b9a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/alsa-lib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/alsa-lib.md @@ -6,6 +6,10 @@ hide: alsa-lib ======== + +The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. + +https://www.alsa-project.org # Available modules @@ -17,7 +21,7 @@ To start using alsa-lib, load one of these modules using a `module load` command module load alsa-lib/1.2.8-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/anadama2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/anadama2.md index 9776c5666acc..bdd6efaecbbc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/anadama2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/anadama2.md @@ -6,6 +6,10 @@ hide: anadama2 ======== + +AnADAMA2 is the next generation of AnADAMA(Another Automated Data Analysis Management Application). AnADAMA is a tool tocreate reproducible workflows and execute them efficiently. + +http://huttenhower.sph.harvard.edu/anadama2 # Available modules @@ -17,8 +21,15 @@ To start using anadama2, load one of these modules using a `module load` command module load anadama2/0.10.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |anadama2/0.10.0-foss-2022a|x|x|x|x|x|x| + + +### anadama2/0.10.0-foss-2022a + +This is a list of extensions included in the module: + +anadama2-0.10.0, cloudpickle-2.2.1, Markdown-3.4.1, Pweave-0.30.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/angsd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/angsd.md index 26a81fee2b71..49973c2fdc19 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/angsd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/angsd.md @@ -6,6 +6,10 @@ hide: angsd ===== + +Program for analysing NGS data. + +http://www.popgen.dk/angsd # Available modules @@ -17,7 +21,7 @@ To start using angsd, load one of these modules using a `module load` command li module load angsd/0.940-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/anndata.md b/mkdocs/docs/HPC/only/gent/available_software/detail/anndata.md index fce3f407e5e6..c4cce23da119 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/anndata.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/anndata.md @@ -6,6 +6,10 @@ hide: anndata ======= + +anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray + +https://github.com/scverse/anndata # Available modules @@ -17,10 +21,29 @@ To start using anndata, load one of these modules using a `module load` command module load anndata/0.10.5.post1-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |anndata/0.10.5.post1-foss-2023a|x|x|x|x|x|x| |anndata/0.9.2-foss-2021a|x|x|x|x|x|x| |anndata/0.8.0-foss-2022a|x|x|x|x|x|x| + + +### anndata/0.10.5.post1-foss-2023a + +This is a list of extensions included in the module: + +anndata-0.10.5.post1, array_api_compat-1.4.1, natsort-8.4.0, packaging-23.2 + +### anndata/0.9.2-foss-2021a + +This is a list of extensions included in the module: + +anndata-0.9.2, natsort-8.4.0, setuptools-68.1.2 + +### anndata/0.8.0-foss-2022a + +This is a list of extensions included in the module: + +anndata-0.8.0, natsort-8.3.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ant.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ant.md index f340d7c5235c..5f8c7795113e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ant.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ant.md @@ -6,6 +6,10 @@ hide: ant === + +Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. + +https://ant.apache.org/ # Available modules @@ -17,7 +21,7 @@ To start using ant, load one of these modules using a `module load` command like module load ant/1.10.12-Java-17 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/antiSMASH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/antiSMASH.md index 31c9f2701cb9..fdfe2366fb20 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/antiSMASH.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/antiSMASH.md @@ -6,6 +6,10 @@ hide: antiSMASH ========= + +antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. + +https://github.com/antismash/antismash # Available modules @@ -17,10 +21,29 @@ To start using antiSMASH, load one of these modules using a `module load` comman module load antiSMASH/6.0.1-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |antiSMASH/6.0.1-foss-2020b|-|x|x|x|x|x| |antiSMASH/5.2.0-foss-2020b|-|x|x|x|x|x| |antiSMASH/5.1.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### antiSMASH/6.0.1-foss-2020b + +This is a list of extensions included in the module: + +antiSMASH-6.0.1, bcbio-gff-0.6.8, helperlibs-0.2.1, pyScss-1.3.7, pysvg-py3-0.2.2.post3 + +### antiSMASH/5.2.0-foss-2020b + +This is a list of extensions included in the module: + +antiSMASH-5.2.0, bcbio-gff-0.6.6, helperlibs-0.2.1, pyScss-1.3.7, pysvg-py3-0.2.2.post3 + +### antiSMASH/5.1.2-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +antiSMASH-5.1.2, bcbio-gff-0.6.6, helperlibs-0.1.11, pyScss-1.3.7, pysvg-py3-0.2.2.post3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/anvio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/anvio.md index 329a43a18062..aabe817c2599 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/anvio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/anvio.md @@ -6,6 +6,10 @@ hide: anvio ===== + +An analysis and visualization platform for 'omics data. + +https://merenlab.org/software/anvio/ # Available modules @@ -17,9 +21,22 @@ To start using anvio, load one of these modules using a `module load` command li module load anvio/8-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |anvio/8-foss-2022b|x|x|x|x|x|x| |anvio/6.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### anvio/8-foss-2022b + +This is a list of extensions included in the module: + +anvio-8, asgiref-3.7.2, bottle-0.12.25, colored-2.2.4, Django-5.0.1, illumina-utils-2.13, mistune-3.0.2, multiprocess-0.70.15, Paste-3.7.1, plotext-5.2.8, pyani-0.2.12, rich_argparse-1.4.0, sqlparse-0.4.4 + +### anvio/6.1-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +anvio-6.1, appdirs-1.4.3, bottle-0.12.17, cheroot-8.2.1, CherryPy-18.4.0, colored-1.4.0, ConfigArgParse-0.15.1, datrie-0.8, Django-2.2.7, ete3-3.1.1, gitdb2-2.0.6, GitPython-3.0.5, illumina-utils-2.6, importlib_metadata-0.23, jaraco.functools-2.0, jsonschema-3.2.0, mistune-0.8.4, more-itertools-7.2.0, patsy-0.5.1, portend-2.6, pyani-0.2.9, pyrsistent-0.15.6, python-Levenshtein-0.12.0, PyYAML-5.1.2, ratelimiter-1.2.0.post0, seaborn-0.9.0, smmap2-2.0.5, snakemake-5.8.1, sqlparse-0.3.0, statsmodels-0.10.1, tempora-1.14.1, wrapt-1.11.2, zc.lockfile-2.0, zipp-0.6.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md index 0927bcf8cde2..feecc75bebb6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md @@ -6,6 +6,10 @@ hide: any2fasta ========= + +Convert various sequence formats to FASTA + +https://github.com/tseemann/any2fasta # Available modules @@ -17,7 +21,7 @@ To start using any2fasta, load one of these modules using a `module load` comman module load any2fasta/0.4.2-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/apex.md b/mkdocs/docs/HPC/only/gent/available_software/detail/apex.md index f5653a4aeb78..b447594bae3a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/apex.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/apex.md @@ -6,6 +6,10 @@ hide: apex ==== + +A PyTorch Extension: Tools for easy mixed precision and distributed training in Pytorch + +https://github.com/nvidia/apex # Available modules @@ -17,7 +21,7 @@ To start using apex, load one of these modules using a `module load` command lik module load apex/20210420-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/archspec.md b/mkdocs/docs/HPC/only/gent/available_software/detail/archspec.md index 9a8276e9531a..c000c2c755d8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/archspec.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/archspec.md @@ -6,6 +6,10 @@ hide: archspec ======== + +A library for detecting, labeling, and reasoning about microarchitectures + +https://github.com/archspec/archspec # Available modules @@ -17,7 +21,7 @@ To start using archspec, load one of these modules using a `module load` command module load archspec/0.1.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,10 @@ module load archspec/0.1.3-GCCcore-11.2.0 |archspec/0.1.2-GCCcore-10.3.0|-|x|x|-|x|x| |archspec/0.1.0-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| |archspec/0.1.0-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| + + +### archspec/0.1.0-GCCcore-8.3.0-Python-3.7.4 + +This is a list of extensions included in the module: + +archspec-0.1.0, six-1.15.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/argtable.md b/mkdocs/docs/HPC/only/gent/available_software/detail/argtable.md index a7c6139b0d60..3942f1d7e972 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/argtable.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/argtable.md @@ -6,6 +6,10 @@ hide: argtable ======== + +Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss. + +http://argtable.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using argtable, load one of these modules using a `module load` command module load argtable/2.13-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/aria2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/aria2.md index 1c8369fd484b..f9976b11fa8c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/aria2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/aria2.md @@ -6,6 +6,10 @@ hide: aria2 ===== + +aria2 is a lightweight multi-protocol & multi-source command-line download utility. + +https://aria2.github.io # Available modules @@ -17,7 +21,7 @@ To start using aria2, load one of these modules using a `module load` command li module load aria2/1.35.0-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/arpack-ng.md b/mkdocs/docs/HPC/only/gent/available_software/detail/arpack-ng.md index 266536eba347..d6a26fd9c337 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/arpack-ng.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/arpack-ng.md @@ -6,6 +6,10 @@ hide: arpack-ng ========= + +ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. + +https://github.com/opencollab/arpack-ng # Available modules @@ -17,7 +21,7 @@ To start using arpack-ng, load one of these modules using a `module load` comman module load arpack-ng/3.9.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/arrow-R.md b/mkdocs/docs/HPC/only/gent/available_software/detail/arrow-R.md index 1730da623faf..2ae9df426262 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/arrow-R.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/arrow-R.md @@ -6,6 +6,10 @@ hide: arrow-R ======= + +R interface to the Apache Arrow C++ library + +https://cran.r-project.org/web/packages/arrow # Available modules @@ -17,7 +21,7 @@ To start using arrow-R, load one of these modules using a `module load` command module load arrow-R/14.0.0.2-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/arrow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/arrow.md index ab245fd63e91..b471f58f256c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/arrow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/arrow.md @@ -6,6 +6,10 @@ hide: arrow ===== + +R interface to the Apache Arrow C++ library + +https://cran.r-project.org/web/packages/arrow # Available modules @@ -17,7 +21,7 @@ To start using arrow, load one of these modules using a `module load` command li module load arrow/0.17.1-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-atk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-atk.md index 446df55ebe70..ccafd0b9a648 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-atk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-atk.md @@ -6,6 +6,10 @@ hide: at-spi2-atk =========== + +AT-SPI 2 toolkit bridge + +https://wiki.gnome.org/Accessibility # Available modules @@ -17,7 +21,7 @@ To start using at-spi2-atk, load one of these modules using a `module load` comm module load at-spi2-atk/2.38.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-core.md b/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-core.md index bd68dd64704c..5a1f5b4945f1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-core.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-core.md @@ -6,6 +6,10 @@ hide: at-spi2-core ============ + +Assistive Technology Service Provider Interface. + +https://wiki.gnome.org/Accessibility # Available modules @@ -17,7 +21,7 @@ To start using at-spi2-core, load one of these modules using a `module load` com module load at-spi2-core/2.49.90-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/atools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/atools.md index 0cb7b479cc56..742a33a36f1c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/atools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/atools.md @@ -6,6 +6,10 @@ hide: atools ====== + +Tools to make using job arrays a lot more convenient. + +https://github.com/gjbex/atools # Available modules @@ -17,7 +21,7 @@ To start using atools, load one of these modules using a `module load` command l module load atools/1.5.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/attr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/attr.md index a6849d81bc66..240c22789d61 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/attr.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/attr.md @@ -6,6 +6,10 @@ hide: attr ==== + +Commands for Manipulating Filesystem Extended Attributes + +https://savannah.nongnu.org/projects/attr # Available modules @@ -17,7 +21,7 @@ To start using attr, load one of these modules using a `module load` command lik module load attr/2.5.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict.md b/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict.md index c45735204b8d..08173995c844 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict.md @@ -6,6 +6,10 @@ hide: attrdict ======== + +AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes. + +https://github.com/bcj/AttrDict # Available modules @@ -17,7 +21,7 @@ To start using attrdict, load one of these modules using a `module load` command module load attrdict/2.0.1-GCCcore-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict3.md index 941fdbb10fb2..8a041c3ed4e1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict3.md @@ -6,6 +6,10 @@ hide: attrdict3 ========= + +AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes. + +https://github.com/pirofti/AttrDict3 # Available modules @@ -17,8 +21,15 @@ To start using attrdict3, load one of these modules using a `module load` comman module load attrdict3/2.0.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |attrdict3/2.0.2-GCCcore-11.2.0|x|x|x|x|x|x| + + +### attrdict3/2.0.2-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +attrdict3-2.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/augur.md b/mkdocs/docs/HPC/only/gent/available_software/detail/augur.md index 9871d45e318e..350d87002900 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/augur.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/augur.md @@ -6,6 +6,10 @@ hide: augur ===== + +Pipeline components for real-time phylodynamic analysis + +https://github.com/nextstrain/augur # Available modules @@ -17,8 +21,15 @@ To start using augur, load one of these modules using a `module load` command li module load augur/7.0.2-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |augur/7.0.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### augur/7.0.2-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +appdirs-1.4.3, augur-7.0.2, bcbio-gff-0.6.6, ConfigArgParse-1.2.1, datrie-0.8.2, importlib-metadata-1.6.0, ipython-genutils-0.2.0, jsonschema-3.2.0, jupyter-core-4.6.3, nbformat-5.0.5, packaging-20.3, phylo-treetime-0.7.5, pyrsistent-0.16.0, ratelimiter-1.2.0.post0, snakemake-5.10.0, toposort-1.5, traitlets-4.3.3, wrapt-1.12.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/autopep8.md b/mkdocs/docs/HPC/only/gent/available_software/detail/autopep8.md index 07d4c62fd51f..8fd27dcb3a8d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/autopep8.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/autopep8.md @@ -6,6 +6,10 @@ hide: autopep8 ======== + +A tool that automatically formats Python code to conform to the PEP 8 style guide. + +https://github.com/hhatto/autopep8 # Available modules @@ -17,7 +21,7 @@ To start using autopep8, load one of these modules using a `module load` command module load autopep8/2.0.4-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/awscli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/awscli.md index 6b5432b18973..091387e34a8e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/awscli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/awscli.md @@ -6,6 +6,10 @@ hide: awscli ====== + +Universal Command Line Environment for AWS + +https://pypi.python.org/pypi/awscli # Available modules @@ -17,8 +21,15 @@ To start using awscli, load one of these modules using a `module load` command l module load awscli/2.11.21-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |awscli/2.11.21-GCCcore-11.3.0|x|x|x|x|x|x| + + +### awscli/2.11.21-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +awscli-2.11.21, awscrt-0.16.16, botocore-1.29.138, distro-1.8.0, jmespath-1.0.1, prompt-toolkit-3.0.38, s3transfer-0.6.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/babl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/babl.md index 5213ecfe64c0..6a30ddb34141 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/babl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/babl.md @@ -6,6 +6,10 @@ hide: babl ==== + +babl is pixel encoding and color space conversion engine in C + +https://www.gegl.org/babl # Available modules @@ -17,7 +21,7 @@ To start using babl, load one of these modules using a `module load` command lik module load babl/0.1.86-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bam-readcount.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bam-readcount.md index d0fb7d08e85a..4fd97ad4724b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bam-readcount.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bam-readcount.md @@ -6,6 +6,10 @@ hide: bam-readcount ============= + +Count DNA sequence reads in BAM files + +https://github.com/genome/bam-readcount # Available modules @@ -17,7 +21,7 @@ To start using bam-readcount, load one of these modules using a `module load` co module load bam-readcount/0.8.0-GCC-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bamFilters.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bamFilters.md index 859dee9124aa..f45f67fdef04 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bamFilters.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bamFilters.md @@ -6,6 +6,10 @@ hide: bamFilters ========== + +A utility tool to filter alignments from bam files, using identity percent, low complexity and read coverage. + +https://github.com/institut-de-genomique/bamFilters # Available modules @@ -17,7 +21,7 @@ To start using bamFilters, load one of these modules using a `module load` comma module load bamFilters/2022-06-30-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/barrnap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/barrnap.md index 3a06398a145e..93637f254768 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/barrnap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/barrnap.md @@ -6,6 +6,10 @@ hide: barrnap ======= + +Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. + +https://github.com/tseemann/barrnap # Available modules @@ -17,7 +21,7 @@ To start using barrnap, load one of these modules using a `module load` command module load barrnap/0.9-gompi-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/basemap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/basemap.md index 4364b8ff0dff..9070bf14ec50 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/basemap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/basemap.md @@ -6,6 +6,10 @@ hide: basemap ======= + +The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python + +http://matplotlib.org/basemap/ # Available modules @@ -17,9 +21,22 @@ To start using basemap, load one of these modules using a `module load` command module load basemap/1.3.9-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |basemap/1.3.9-foss-2023a|x|x|x|x|x|x| |basemap/1.2.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### basemap/1.3.9-foss-2023a + +This is a list of extensions included in the module: + +basemap-1.3.9, basemap_data-1.3.9, pyshp-2.3.1 + +### basemap/1.2.2-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +basemap-1.2.2, pyshp-2.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bcbio-gff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bcbio-gff.md index 46428c4b25bd..a430f9966653 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bcbio-gff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bcbio-gff.md @@ -6,6 +6,10 @@ hide: bcbio-gff ========= + +Read and write Generic Feature Format (GFF) with Biopython integration. + +https://github.com/chapmanb/bcbb/tree/master/gff # Available modules @@ -17,7 +21,7 @@ To start using bcbio-gff, load one of these modules using a `module load` comman module load bcbio-gff/0.7.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bcgTree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bcgTree.md index d8c58b53d20c..a91edb1a8a3e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bcgTree.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bcgTree.md @@ -6,6 +6,10 @@ hide: bcgTree ======= + +Automatized phylogenetic tree building from bacterial core genomes. + +https://github.com/molbiodiv/bcgTree # Available modules @@ -17,7 +21,7 @@ To start using bcgTree, load one of these modules using a `module load` command module load bcgTree/1.2.0-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bcl-convert.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bcl-convert.md index e9aec9c3801a..925298261523 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bcl-convert.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bcl-convert.md @@ -6,6 +6,10 @@ hide: bcl-convert =========== + +The Illumina BCL Convert v4.0 is a standalone local software app that converts the Binary Base Call (BCL) files produced by Illumina sequencing systems to FASTQ files. + +https://support.illumina.com/sequencing/sequencing_software/bcl-convert.html # Available modules @@ -17,7 +21,7 @@ To start using bcl-convert, load one of these modules using a `module load` comm module load bcl-convert/4.0.3-2el7.x86_64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bcl2fastq2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bcl2fastq2.md index c60c6fbe276b..2ae109048e33 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bcl2fastq2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bcl2fastq2.md @@ -6,6 +6,10 @@ hide: bcl2fastq2 ========== + +bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis. + +https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html # Available modules @@ -17,7 +21,7 @@ To start using bcl2fastq2, load one of these modules using a `module load` comma module load bcl2fastq2/2.20.0-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/beagle-lib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/beagle-lib.md index 759e567f4fea..43f3e83ff5f7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/beagle-lib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/beagle-lib.md @@ -6,6 +6,10 @@ hide: beagle-lib ========== + +beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. + +https://github.com/beagle-dev/beagle-lib # Available modules @@ -17,7 +21,7 @@ To start using beagle-lib, load one of these modules using a `module load` comma module load beagle-lib/4.0.0-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/binutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/binutils.md index 0fee7d42b328..09cd9e95916b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/binutils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/binutils.md @@ -6,6 +6,10 @@ hide: binutils ======== + +binutils: GNU binary utilities + +https://directory.fsf.org/project/binutils/ # Available modules @@ -17,7 +21,7 @@ To start using binutils, load one of these modules using a `module load` command module load binutils/2.40-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/biobakery-workflows.md b/mkdocs/docs/HPC/only/gent/available_software/detail/biobakery-workflows.md index 400166d5a15f..5aae5d4cbca3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/biobakery-workflows.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/biobakery-workflows.md @@ -6,6 +6,10 @@ hide: biobakery-workflows =================== + +bioBakery workflows is a collection of workflows and tasks for executingcommon microbial community analyses using standardized, validated tools and parameters.Quality control and statistical summary reports are automatically generated for most datatypes, which include 16S amplicons, metagenomes, and metatranscriptomes. Workflows are rundirectly from the command line and tasks can be imported to create your own custom workflows.The workflows and tasks are built with AnADAMA2 which allows for parallel task execution locallyand in a grid compute environment. + +http://huttenhower.sph.harvard.edu/biobakery_workflows # Available modules @@ -17,7 +21,7 @@ To start using biobakery-workflows, load one of these modules using a `module lo module load biobakery-workflows/3.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/biobambam2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/biobambam2.md index 07d5a3bfdd09..bc1726b59b1b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/biobambam2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/biobambam2.md @@ -6,6 +6,10 @@ hide: biobambam2 ========== + +Tools for processing BAM files + +https://github.com/gt1/biobambam2 # Available modules @@ -17,7 +21,7 @@ To start using biobambam2, load one of these modules using a `module load` comma module load biobambam2/2.0.185-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/biogeme.md b/mkdocs/docs/HPC/only/gent/available_software/detail/biogeme.md index 487f9dae24b1..34129458eee6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/biogeme.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/biogeme.md @@ -6,6 +6,10 @@ hide: biogeme ======= + +Biogeme is a open source Python package designed forthe maximum likelihood estimation of parametric models in general,with a special emphasis on discrete choice models. + +https://pypi.python.org/pypi/biogeme # Available modules @@ -17,9 +21,22 @@ To start using biogeme, load one of these modules using a `module load` command module load biogeme/3.2.10-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |biogeme/3.2.10-foss-2022a|x|x|x|-|x|x| |biogeme/3.2.6-foss-2022a|x|x|x|-|x|x| + + +### biogeme/3.2.10-foss-2022a + +This is a list of extensions included in the module: + +biogeme-3.2.10, Unidecode-1.3.6 + +### biogeme/3.2.6-foss-2022a + +This is a list of extensions included in the module: + +biogeme-3.2.6, Unidecode-1.3.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/biom-format.md b/mkdocs/docs/HPC/only/gent/available_software/detail/biom-format.md index 740b3f816d18..f8a4c446b8e7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/biom-format.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/biom-format.md @@ -6,6 +6,10 @@ hide: biom-format =========== + +The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project. + +https://biom-format.org # Available modules @@ -17,7 +21,7 @@ To start using biom-format, load one of these modules using a `module load` comm module load biom-format/2.1.15-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bmtagger.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bmtagger.md index 78e7bc86e5e9..f4b08fab078a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bmtagger.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bmtagger.md @@ -6,6 +6,10 @@ hide: bmtagger ======== + +Best Match Tagger for removing human reads from metagenomics datasets + +ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/ # Available modules @@ -17,7 +21,7 @@ To start using bmtagger, load one of these modules using a `module load` command module load bmtagger/3.101-gompi-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bokeh.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bokeh.md index 0200cb560257..d5c194d5bceb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bokeh.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bokeh.md @@ -6,6 +6,10 @@ hide: bokeh ===== + +Statistical and novel interactive HTML plots for Python + +https://github.com/bokeh/bokeh # Available modules @@ -17,7 +21,7 @@ To start using bokeh, load one of these modules using a `module load` command li module load bokeh/3.2.2-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -32,3 +36,70 @@ module load bokeh/3.2.2-foss-2023a |bokeh/2.0.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| |bokeh/1.4.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |bokeh/1.4.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### bokeh/3.2.2-foss-2023a + +This is a list of extensions included in the module: + +bokeh-3.2.2, contourpy-1.0.7, xyzservices-2023.7.0 + +### bokeh/2.4.3-foss-2022a + +This is a list of extensions included in the module: + +bokeh-2.4.3, tornado-6.1 + +### bokeh/2.4.2-foss-2021b + +This is a list of extensions included in the module: + +bokeh-2.4.2, tornado-6.1 + +### bokeh/2.4.1-foss-2021a + +This is a list of extensions included in the module: + +bokeh-2.4.1, tornado-6.1 + +### bokeh/2.2.3-intel-2020b + +This is a list of extensions included in the module: + +bokeh-2.2.3, tornado-6.1 + +### bokeh/2.2.3-fosscuda-2020b + +This is a list of extensions included in the module: + +bokeh-2.2.3, tornado-6.1 + +### bokeh/2.2.3-foss-2020b + +This is a list of extensions included in the module: + +bokeh-2.2.3, tornado-6.1 + +### bokeh/2.0.2-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +bokeh-2.0.2, tornado-6.0.4, typing-extensions-3.7.4.2 + +### bokeh/2.0.2-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +bokeh-2.0.2, tornado-6.0.4, typing-extensions-3.7.4.2 + +### bokeh/1.4.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +bokeh-1.4.0, tornado-6.0.3 + +### bokeh/1.4.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +bokeh-1.4.0, tornado-6.0.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/boto3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/boto3.md index 91cd67a4ed22..2079c1cd01c1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/boto3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/boto3.md @@ -6,6 +6,10 @@ hide: boto3 ===== + +Boto3 is the Amazon Web Services (AWS) Software Development Kit(SDK) for Python, which allows Python developers to write software that makesuse of services like Amazon S3 and Amazon EC2. + +https://github.com/boto/boto3 # Available modules @@ -17,7 +21,7 @@ To start using boto3, load one of these modules using a `module load` command li module load boto3/1.34.10-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,28 @@ module load boto3/1.34.10-GCCcore-12.2.0 |boto3/1.26.163-GCCcore-12.2.0|x|x|x|x|x|x| |boto3/1.20.13-GCCcore-11.2.0|x|x|x|-|x|x| |boto3/1.20.13-GCCcore-10.3.0|x|x|x|-|x|x| + + +### boto3/1.34.10-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +boto3-1.34.10, botocore-1.34.12, jmespath-1.0.1, s3transfer-0.10.0 + +### boto3/1.26.163-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +boto3-1.26.163, botocore-1.29.163, jmespath-1.0.1, s3transfer-0.6.1 + +### boto3/1.20.13-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +boto3-1.20.13, botocore-1.23.13, jmespath-0.10.0, s3transfer-0.5.0 + +### boto3/1.20.13-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +boto3-1.20.13, botocore-1.23.13, jmespath-0.10.0, s3transfer-0.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bpp.md index 6b206133b614..ef7fdd142241 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bpp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bpp.md @@ -6,6 +6,10 @@ hide: bpp === + +The aim of this project is to implement a versatile high-performance version of the BPP software. + +https://github.com/bpp/bpp # Available modules @@ -17,7 +21,7 @@ To start using bpp, load one of these modules using a `module load` command like module load bpp/4.4.0-GCC-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/btllib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/btllib.md index 816b7c89df01..9cbd55e9d164 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/btllib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/btllib.md @@ -6,6 +6,10 @@ hide: btllib ====== + +Bioinformatics Technology Lab common code library + +https://github.com/bcgsc/btllib # Available modules @@ -17,7 +21,7 @@ To start using btllib, load one of these modules using a `module load` command l module load btllib/1.7.0-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/build.md b/mkdocs/docs/HPC/only/gent/available_software/detail/build.md index c97bda1251dd..49a25a86b065 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/build.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/build.md @@ -6,6 +6,10 @@ hide: build ===== + +A simple, correct Python build frontend. + +https://github.com/pypa/build # Available modules @@ -17,8 +21,15 @@ To start using build, load one of these modules using a `module load` command li module load build/0.10.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |build/0.10.0-foss-2022a|x|x|x|x|x|x| + + +### build/0.10.0-foss-2022a + +This is a list of extensions included in the module: + +build-0.10.0, pyproject_hooks-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/buildenv.md b/mkdocs/docs/HPC/only/gent/available_software/detail/buildenv.md index 69f6e96af647..e0940e468d40 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/buildenv.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/buildenv.md @@ -6,6 +6,10 @@ hide: buildenv ======== + +This module sets a group of environment variables for compilers, linkers, maths libraries, etc., that you can use to easily transition between toolchains when building your software. To query the variables being set please use: module show + +None # Available modules @@ -17,7 +21,7 @@ To start using buildenv, load one of these modules using a `module load` command module load buildenv/default-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/buildingspy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/buildingspy.md index aecdc09e2893..045ff35f8fb6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/buildingspy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/buildingspy.md @@ -6,6 +6,10 @@ hide: buildingspy =========== + +Python modules for automating Modelica simulations and for running unit test for the Buildings library + +https://simulationresearch.lbl.gov/modelica/buildingspy # Available modules @@ -17,8 +21,15 @@ To start using buildingspy, load one of these modules using a `module load` comm module load buildingspy/4.0.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |buildingspy/4.0.0-foss-2022a|x|x|x|-|x|x| + + +### buildingspy/4.0.0-foss-2022a + +This is a list of extensions included in the module: + +buildingspy-4.0.0, Cerberus-1.3.4, pyfunnel-0.3.0, pytidylib-0.3.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bwa-meth.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bwa-meth.md index 68eb09e9aa0d..ab43a924a200 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bwa-meth.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bwa-meth.md @@ -6,6 +6,10 @@ hide: bwa-meth ======== + +Fast and accurante alignment of BS-Seq reads. + +https://github.com/brentp/bwa-meth # Available modules @@ -17,9 +21,22 @@ To start using bwa-meth, load one of these modules using a `module load` command module load bwa-meth/0.2.6-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |bwa-meth/0.2.6-GCC-11.3.0|x|x|x|x|x|x| |bwa-meth/0.2.2-iccifort-2019.5.281|-|x|-|-|-|-| + + +### bwa-meth/0.2.6-GCC-11.3.0 + +This is a list of extensions included in the module: + +bwa-meth-0.2.6, toolshed-0.4.6 + +### bwa-meth/0.2.2-iccifort-2019.5.281 + +This is a list of extensions included in the module: + +bwa-meth-0.2.2, toolshed-0.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bwidget.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bwidget.md index 60cc2cd391fc..aa1298b6b599 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bwidget.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bwidget.md @@ -6,6 +6,10 @@ hide: bwidget ======= + +The BWidget Toolkit is a high-level Widget Set for Tcl/Tk built using native Tcl/Tk 8.x namespaces. + +https://core.tcl-lang.org/bwidget/home # Available modules @@ -17,7 +21,7 @@ To start using bwidget, load one of these modules using a `module load` command module load bwidget/1.9.15-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bx-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bx-python.md index 12ec7fe079de..c39ef01c8f61 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bx-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bx-python.md @@ -6,6 +6,10 @@ hide: bx-python ========= + +The bx-python project is a Python library and associated set of scripts to allow for rapid implementation of genome scale analyses. + +https://github.com/bxlab/bx-python # Available modules @@ -17,7 +21,7 @@ To start using bx-python, load one of these modules using a `module load` comman module load bx-python/0.10.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,28 @@ module load bx-python/0.10.0-foss-2023a |bx-python/0.9.0-foss-2022a|x|x|x|x|x|x| |bx-python/0.8.13-foss-2021b|x|x|x|-|x|x| |bx-python/0.8.9-foss-2020a-Python-3.8.2|-|-|x|-|x|x| + + +### bx-python/0.10.0-foss-2023a + +This is a list of extensions included in the module: + +bx-python-0.10.0, python-lzo-1.15 + +### bx-python/0.9.0-foss-2022a + +This is a list of extensions included in the module: + +bx-python-0.9.0, python-lzo-1.14 + +### bx-python/0.8.13-foss-2021b + +This is a list of extensions included in the module: + +bx-python-0.8.13, python-lzo-1.14 + +### bx-python/0.8.9-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +bx-python-0.8.9, python-lzo-1.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bzip2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bzip2.md index 1363eafd97ef..25e55bf74c46 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bzip2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bzip2.md @@ -6,6 +6,10 @@ hide: bzip2 ===== + +bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. + +https://sourceware.org/bzip2 # Available modules @@ -17,7 +21,7 @@ To start using bzip2, load one of these modules using a `module load` command li module load bzip2/1.0.8-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/c-ares.md b/mkdocs/docs/HPC/only/gent/available_software/detail/c-ares.md index 1b7b48912fa9..3d7b9b8a5667 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/c-ares.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/c-ares.md @@ -6,6 +6,10 @@ hide: c-ares ====== + +c-ares is a C library for asynchronous DNS requests (including name resolves) + +https://c-ares.haxx.se # Available modules @@ -17,7 +21,7 @@ To start using c-ares, load one of these modules using a `module load` command l module load c-ares/1.18.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cURL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cURL.md index 2ce7ad228284..b9d4cbc8b5b4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cURL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cURL.md @@ -6,6 +6,10 @@ hide: cURL ==== + +libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. + +http://curl.haxx.se # Available modules @@ -17,7 +21,7 @@ To start using cURL, load one of these modules using a `module load` command lik module load cURL/8.3.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cairo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cairo.md index 11775742c2cc..0973fe36843b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cairo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cairo.md @@ -6,6 +6,10 @@ hide: cairo ===== + +Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB + +https://cairographics.org # Available modules @@ -17,7 +21,7 @@ To start using cairo, load one of these modules using a `module load` command li module load cairo/1.17.8-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/canu.md b/mkdocs/docs/HPC/only/gent/available_software/detail/canu.md index 3afae566a1e2..a98849416491 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/canu.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/canu.md @@ -6,6 +6,10 @@ hide: canu ==== + +Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing + +https://canu.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using canu, load one of these modules using a `module load` command lik module load canu/2.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/carputils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/carputils.md index a83f2462024c..182a1a01979a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/carputils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/carputils.md @@ -6,6 +6,10 @@ hide: carputils ========= + +carputils is a Python framework for generating and running openCARP examples. + +https://git.opencarp.org/openCARP/carputils # Available modules @@ -17,9 +21,22 @@ To start using carputils, load one of these modules using a `module load` comman module load carputils/20210513-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |carputils/20210513-foss-2020b|-|x|x|x|x|x| |carputils/20200915-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### carputils/20210513-foss-2020b + +This is a list of extensions included in the module: + +carputils-20210513, common-0.1.2, doxypypy-0.8.8.6, pyDOE-0.3.8 + +### carputils/20200915-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +carputils-20200915, doxypypy-0.8.8.6, pyDOE-0.3.8 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ccache.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ccache.md index 3b3c5730cfd2..fb768889c92d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ccache.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ccache.md @@ -6,6 +6,10 @@ hide: ccache ====== + +Ccache (or “ccache”) is a compiler cache. It speeds up recompilation bycaching previous compilations and detecting when the same compilation is being done again + +https://ccache.dev/ # Available modules @@ -17,7 +21,7 @@ To start using ccache, load one of these modules using a `module load` command l module load ccache/4.6.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cctbx-base.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cctbx-base.md index c8ef30037814..b39ba5dad200 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cctbx-base.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cctbx-base.md @@ -6,6 +6,10 @@ hide: cctbx-base ========== + +Computational Crystallography Toolbox + +https://github.com/cctbx/cctbx_project # Available modules @@ -17,10 +21,23 @@ To start using cctbx-base, load one of these modules using a `module load` comma module load cctbx-base/2023.5-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |cctbx-base/2023.5-foss-2022a|-|-|x|-|x|-| |cctbx-base/2020.8-fosscuda-2020b|x|-|-|-|x|-| |cctbx-base/2020.8-foss-2020b|x|x|x|x|x|x| + + +### cctbx-base/2020.8-fosscuda-2020b + +This is a list of extensions included in the module: + +cctbx-base-2020.8, reportlab-3.5.66 + +### cctbx-base/2020.8-foss-2020b + +This is a list of extensions included in the module: + +cctbx-base-2020.8, reportlab-3.5.66 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cdbfasta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cdbfasta.md index c137a88738a9..ba57d2bcdee4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cdbfasta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cdbfasta.md @@ -6,6 +6,10 @@ hide: cdbfasta ======== + +Fasta file indexing and retrival tool + +https://sourceforge.net/projects/cdbfasta # Available modules @@ -17,7 +21,7 @@ To start using cdbfasta, load one of these modules using a `module load` command module load cdbfasta/0.99-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cdo-bindings.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cdo-bindings.md index db37b3abf3d9..ffbc2cd1811d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cdo-bindings.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cdo-bindings.md @@ -6,6 +6,10 @@ hide: cdo-bindings ============ + +Python interface to CDO. + +https://github.com/Try2Code/cdo-bindings # Available modules @@ -17,8 +21,15 @@ To start using cdo-bindings, load one of these modules using a `module load` com module load cdo-bindings/1.5.7-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |cdo-bindings/1.5.7-foss-2021b|x|x|x|x|x|x| + + +### cdo-bindings/1.5.7-foss-2021b + +This is a list of extensions included in the module: + +cdo-1.5.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cdsapi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cdsapi.md index 632081f70271..58f8eadf7a91 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cdsapi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cdsapi.md @@ -6,6 +6,10 @@ hide: cdsapi ====== + +Climate Data Store API + +https://pypi.org/project/cdsapi # Available modules @@ -17,7 +21,7 @@ To start using cdsapi, load one of these modules using a `module load` command l module load cdsapi/0.5.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cell2location.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cell2location.md index 947486d64138..ceaf615ff4ea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cell2location.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cell2location.md @@ -6,6 +6,10 @@ hide: cell2location ============= + +Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model) + +https://github.com/BayraktarLab/cell2location/ # Available modules @@ -17,8 +21,15 @@ To start using cell2location, load one of these modules using a `module load` co module load cell2location/0.05-alpha-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |cell2location/0.05-alpha-fosscuda-2020b|-|-|-|-|x|-| + + +### cell2location/0.05-alpha-fosscuda-2020b + +This is a list of extensions included in the module: + +anndata-0.7.5, annoy-1.17.0, bbknn-1.3.12, cell2location-0.05-alpha, descartes-1.1.0, get_version-2.1, ipykernel-5.3.4, legacy-api-wrap-1.2, loompy-3.0.6, louvain-0.7.0, mizani-0.7.1, natsort-7.1.0, nose-1.3.7, numpy-groupies-0.9.13, opt-einsum-3.3.0, palettable-3.3.0, plotnine-0.7.0, pytoml-0.1.21, scanpy-1.6.0, sinfo-0.3.1, stdlib-list-0.8.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cffi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cffi.md index 1fe9c45f1a3c..96fa0be25d6c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cffi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cffi.md @@ -6,6 +6,10 @@ hide: cffi ==== + +C Foreign Function Interface for Python. Interact with almost any C code fromPython, based on C-like declarations that you can often copy-paste from headerfiles or documentation. + +https://cffi.readthedocs.io/en/latest/ # Available modules @@ -17,10 +21,29 @@ To start using cffi, load one of these modules using a `module load` command lik module load cffi/1.15.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |cffi/1.15.1-GCCcore-13.2.0|x|x|x|x|x|x| |cffi/1.15.1-GCCcore-12.3.0|x|x|x|x|x|x| |cffi/1.15.1-GCCcore-11.3.0|x|x|x|x|x|x| + + +### cffi/1.15.1-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +cffi-1.15.1, pycparser-2.21 + +### cffi/1.15.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +cffi-1.15.1, pycparser-2.21 + +### cffi/1.15.1-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +cffi-1.15.1, pycparser-2.21 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/chemprop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/chemprop.md index 29e705e26214..064e0b4d940b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/chemprop.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/chemprop.md @@ -6,6 +6,10 @@ hide: chemprop ======== + +Message Passing Neural Networks for Molecule Property Prediction + +https://github.com/chemprop/chemprop # Available modules @@ -17,9 +21,22 @@ To start using chemprop, load one of these modules using a `module load` command module load chemprop/1.5.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |chemprop/1.5.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |chemprop/1.5.2-foss-2022a|x|x|x|x|x|x| + + +### chemprop/1.5.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +chemprop-1.5.2, mypy_extensions-1.0.0, packaging-20.4, pandas_flavor-0.2.0, typed-argument-parser-1.7.2, typing_inspect-0.8.0 + +### chemprop/1.5.2-foss-2022a + +This is a list of extensions included in the module: + +chemprop-1.5.2, mypy_extensions-1.0.0, packaging-20.4, pandas_flavor-0.2.0, typed-argument-parser-1.7.2, typing_inspect-0.8.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/chewBBACA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/chewBBACA.md index dff8cb97cb52..be1306fc58e3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/chewBBACA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/chewBBACA.md @@ -6,6 +6,10 @@ hide: chewBBACA ========= + +chewBBACA stands for "BSR-Based Allele Calling Algorithm".chewBBACA is a comprehensive pipeline including a set of functions for thecreation and validation of whole genome and core genome MultiLocus SequenceTyping (wg/cgMLST) schemas, providing an allele calling algorithm based on BlastScore Ratio that can be run in multiprocessor settings and a set of functions tovisualize and validate allele variation in the loci. + +https://github.com/B-UMMI/chewBBACA # Available modules @@ -17,8 +21,15 @@ To start using chewBBACA, load one of these modules using a `module load` comman module load chewBBACA/2.5.5-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |chewBBACA/2.5.5-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### chewBBACA/2.5.5-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +chewBBACA-2.5.5, isodate-0.6.0, rdflib-5.0.0, SPARQLWrapper-1.8.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cicero.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cicero.md index 50c308e5b1c4..f74d39a27909 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cicero.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cicero.md @@ -6,6 +6,10 @@ hide: cicero ====== + +Cicero is an R package that provides tools for analyzing single-cell chromatin accessibility experiments. + +https://cole-trapnell-lab.github.io/cicero-release # Available modules @@ -17,7 +21,7 @@ To start using cicero, load one of these modules using a `module load` command l module load cicero/1.3.8-foss-2022a-R-4.2.1-Monocle3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cimfomfa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cimfomfa.md index ef0e5129e624..be16ec136ac9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cimfomfa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cimfomfa.md @@ -6,6 +6,10 @@ hide: cimfomfa ======== + +This library supports both MCL, a cluster algorithm for graphs, and zoem, amacro/DSL language. It supplies abstractions for memory management, I/O,associative arrays, strings, heaps, and a few other things. The string libraryhas had heavy testing as part of zoem. Both understandably and regrettably Ichose long ago to make it C-string-compatible, hence nul bytes may not be partof a string. At some point I hope to rectify this, perhaps unrealistically. + +https://github.com/micans/cimfomfa # Available modules @@ -17,7 +21,7 @@ To start using cimfomfa, load one of these modules using a `module load` command module load cimfomfa/22.273-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/code-cli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/code-cli.md index 9bdb88bea341..fcb4bc979e66 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/code-cli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/code-cli.md @@ -6,6 +6,10 @@ hide: code-cli ======== + +Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos. + +https://code.visualstudio.com/ # Available modules @@ -17,7 +21,7 @@ To start using code-cli, load one of these modules using a `module load` command module load code-cli/1.85.1-x64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/code-server.md b/mkdocs/docs/HPC/only/gent/available_software/detail/code-server.md index 0f782e863af9..98ba1166bfb1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/code-server.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/code-server.md @@ -6,6 +6,10 @@ hide: code-server =========== + +Run VS Code on any machine anywhere and access it in the browser. + +https://github.com/cdr/code-server # Available modules @@ -17,7 +21,7 @@ To start using code-server, load one of these modules using a `module load` comm module load code-server/4.9.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/colossalai.md b/mkdocs/docs/HPC/only/gent/available_software/detail/colossalai.md index 7ee14097185b..a304d85f96a7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/colossalai.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/colossalai.md @@ -6,6 +6,10 @@ hide: colossalai ========== + +Colossal-AI: A Unified Deep Learning System for Big Model Era + +https://colossalai.org/ # Available modules @@ -17,8 +21,15 @@ To start using colossalai, load one of these modules using a `module load` comma module load colossalai/0.1.8-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |colossalai/0.1.8-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### colossalai/0.1.8-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +cfgv-3.3.1, colossalai-0.1.8, commonmark-0.9.1, fabric-2.7.1, identify-2.5.1, invoke-1.7.1, nodeenv-1.6.0, pre_commit-2.19.0, rich-12.4.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/conan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/conan.md index 78f1516abccf..5fab12148092 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/conan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/conan.md @@ -6,6 +6,10 @@ hide: conan ===== + +Decentralized, open-source (MIT), C/C++ package manager. + +https://conan.io # Available modules @@ -17,9 +21,22 @@ To start using conan, load one of these modules using a `module load` command li module load conan/1.60.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |conan/1.60.2-GCCcore-12.3.0|x|x|x|x|x|x| |conan/1.58.0-GCCcore-11.3.0|x|x|x|x|x|x| + + +### conan/1.60.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +bottle-0.12.25, conan-1.60.2, distro-1.8.0, fasteners-0.18, node-semver-0.6.1, patch-ng-1.17.4, pluginbase-1.0.1, PyJWT-2.8.0 + +### conan/1.58.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +bottle-0.12.23, conan-1.58.0, distro-1.7.0, fasteners-0.18, node-semver-0.6.1, patch-ng-1.17.4, pluginbase-1.0.1, PyJWT-2.6.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/configurable-http-proxy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/configurable-http-proxy.md index c361848bc5f8..6863d32c9069 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/configurable-http-proxy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/configurable-http-proxy.md @@ -6,6 +6,10 @@ hide: configurable-http-proxy ======================= + +HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server. + +https://github.com/jupyterhub/configurable-http-proxy # Available modules @@ -17,7 +21,7 @@ To start using configurable-http-proxy, load one of these modules using a `modul module load configurable-http-proxy/4.5.5-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cooler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cooler.md index 9ab067d80f79..8cf6e8e4ac82 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cooler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cooler.md @@ -6,6 +6,10 @@ hide: cooler ====== + +Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices. + +https://open2c.github.io/cooler # Available modules @@ -17,8 +21,15 @@ To start using cooler, load one of these modules using a `module load` command l module load cooler/0.9.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |cooler/0.9.1-foss-2022a|x|x|x|x|x|x| + + +### cooler/0.9.1-foss-2022a + +This is a list of extensions included in the module: + +asciitree-0.3.3, cooler-0.9.1, cytoolz-0.12.1, dill-0.3.6, multiprocess-0.70.14, setuptools-67.2.0, toolz-0.12.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/coverage.md b/mkdocs/docs/HPC/only/gent/available_software/detail/coverage.md index 350b6304a414..78110a655d7f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/coverage.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/coverage.md @@ -6,6 +6,10 @@ hide: coverage ======== + +Coverage.py is a tool for measuring code coverage of Python programs. It monitors your program, noting which parts of the code have been executed, then analyzes the source to identify code that could have been executed but was not. + +https://coverage.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using coverage, load one of these modules using a `module load` command module load coverage/7.2.7-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cppy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cppy.md index 5b734905d82e..8be3f63f76ea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cppy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cppy.md @@ -6,6 +6,10 @@ hide: cppy ==== + +A small C++ header library which makes it easier to writePython extension modules. The primary feature is a PyObject smart pointerwhich automatically handles reference counting and provides conveniencemethods for performing common object operations. + +https://github.com/nucleic/cppy # Available modules @@ -17,7 +21,7 @@ To start using cppy, load one of these modules using a `module load` command lik module load cppy/1.2.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cpu_features.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cpu_features.md index 181a2a46a865..68131069ca4c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cpu_features.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cpu_features.md @@ -6,6 +6,10 @@ hide: cpu_features ============ + +A cross-platform C library to retrieve CPU features (such as available instructions) at runtime. + +https://github.com/google/cpu_features # Available modules @@ -17,7 +21,7 @@ To start using cpu_features, load one of these modules using a `module load` com module load cpu_features/0.6.0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cryoDRGN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cryoDRGN.md index 2645ad927b48..29d7b5f99dfe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cryoDRGN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cryoDRGN.md @@ -6,6 +6,10 @@ hide: cryoDRGN ======== + +cryoDRGN: Deep Reconstructing Generative Networks for cryo-EM heterogeneous reconstruction. CryoDRGN is a neural network based algorithm for heterogeneous cryo-EM reconstruction. In particular, the method models a continuous distribution over 3D structures by using a neural network based representation for the volume. + +https://cb.csail.mit.edu/cb/cryodrgn/ # Available modules @@ -17,9 +21,22 @@ To start using cryoDRGN, load one of these modules using a `module load` command module load cryoDRGN/1.0.0-beta-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |cryoDRGN/1.0.0-beta-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| |cryoDRGN/0.3.5-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### cryoDRGN/1.0.0-beta-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +colorlover-0.3.0, cryodrgn-1.0.0-beta, cufflinks-0.17.3, pynndescent-0.5.6, umap-learn-0.5.3 + +### cryoDRGN/0.3.5-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +colorlover-0.3.0, cryodrgn-0.3.5, cufflinks-0.17.3, pynndescent-0.5.6, umap-learn-0.5.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cryptography.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cryptography.md index f8db387c5fe6..6b780faa963d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cryptography.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cryptography.md @@ -6,6 +6,10 @@ hide: cryptography ============ + +cryptography is a package designed to expose cryptographic primitives and recipes to Python developers. + +https://github.com/pyca/cryptography # Available modules @@ -17,7 +21,7 @@ To start using cryptography, load one of these modules using a `module load` com module load cryptography/41.0.5-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cuDNN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cuDNN.md index 3049e4804c34..d3e8684ef797 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cuDNN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cuDNN.md @@ -6,6 +6,10 @@ hide: cuDNN ===== + +The NVIDIA CUDA Deep Neural Network library (cuDNN) isa GPU-accelerated library of primitives for deep neural networks. + +https://developer.nvidia.com/cudnn # Available modules @@ -17,7 +21,7 @@ To start using cuDNN, load one of these modules using a `module load` command li module load cuDNN/8.9.2.26-CUDA-12.1.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cuTENSOR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cuTENSOR.md index c64609a448a3..2635d63340ce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cuTENSOR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cuTENSOR.md @@ -6,6 +6,10 @@ hide: cuTENSOR ======== + +The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations. + +https://developer.nvidia.com/cutensor # Available modules @@ -17,7 +21,7 @@ To start using cuTENSOR, load one of these modules using a `module load` command module load cuTENSOR/1.2.2.5-CUDA-11.1.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md index a8b93fc4eb60..0263e9348bf7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md @@ -6,6 +6,10 @@ hide: cutadapt ======== + +Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. + +https://opensource.scilifelab.se/projects/cutadapt/ # Available modules @@ -17,7 +21,7 @@ To start using cutadapt, load one of these modules using a `module load` command module load cutadapt/4.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -29,3 +33,52 @@ module load cutadapt/4.2-GCCcore-11.3.0 |cutadapt/1.18-GCCcore-8.3.0-Python-2.7.16|-|x|x|-|x|x| |cutadapt/1.18-GCCcore-8.3.0|-|x|x|-|x|x| |cutadapt/1.18-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x| + + +### cutadapt/4.2-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +cutadapt-4.2, dnaio-0.10.0, xopen-1.7.0 + +### cutadapt/3.5-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +cutadapt-3.5, dnaio-0.7.0, xopen-1.4.0 + +### cutadapt/3.4-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +cutadapt-3.4, dnaio-0.5.2, xopen-1.1.0 + +### cutadapt/2.10-GCCcore-9.3.0-Python-3.8.2 + +This is a list of extensions included in the module: + +cutadapt-2.10, dnaio-0.4.2, xopen-0.8.4 + +### cutadapt/2.7-GCCcore-8.3.0-Python-3.7.4 + +This is a list of extensions included in the module: + +cutadapt-2.7, dnaio-0.4.1, xopen-0.8.4 + +### cutadapt/1.18-GCCcore-8.3.0-Python-2.7.16 + +This is a list of extensions included in the module: + +bz2file-0.98, cutadapt-1.18, xopen-0.8.4 + +### cutadapt/1.18-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +bz2file-0.98, cutadapt-1.18, xopen-0.5.1 + +### cutadapt/1.18-GCC-10.2.0-Python-2.7.18 + +This is a list of extensions included in the module: + +bz2file-0.98, cutadapt-1.18, xopen-0.8.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cuteSV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cuteSV.md index d13ff23b815b..22fc80a7f54b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cuteSV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cuteSV.md @@ -6,6 +6,10 @@ hide: cuteSV ====== + +cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection. + +https://github.com/tjiangHIT/cuteSV # Available modules @@ -17,8 +21,15 @@ To start using cuteSV, load one of these modules using a `module load` command l module load cuteSV/2.0.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |cuteSV/2.0.3-foss-2022a|x|x|x|x|x|x| + + +### cuteSV/2.0.3-foss-2022a + +This is a list of extensions included in the module: + +cigar-0.1.3, cuteSV-2.0.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cython-blis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cython-blis.md index b70e6dfda6cf..fd91162f008d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cython-blis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cython-blis.md @@ -6,6 +6,10 @@ hide: cython-blis =========== + +Fast BLAS-like operations from Python and Cython, without the tears.Provides the Blis linear algebra routines as a self-contained Python C-extension. + +https://github.com/explosion/cython-blis # Available modules @@ -17,7 +21,7 @@ To start using cython-blis, load one of these modules using a `module load` comm module load cython-blis/0.9.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dask.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dask.md index c58540c37d31..a4205dd91829 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dask.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dask.md @@ -6,6 +6,10 @@ hide: dask ==== + +Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love. + +https://dask.org/ # Available modules @@ -17,7 +21,7 @@ To start using dask, load one of these modules using a `module load` command lik module load dask/2023.12.1-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -32,3 +36,70 @@ module load dask/2023.12.1-foss-2023a |dask/2.18.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| |dask/2.8.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |dask/2.8.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### dask/2023.12.1-foss-2023a + +This is a list of extensions included in the module: + +dask-2023.12.1, dask-jobqueue-0.8.2, dask-mpi-2022.4.0, distributed-2023.12.1, docrep-0.3.2, HeapDict-1.0.1, locket-1.0.0, partd-1.4.1, tblib-3.0.0, toolz-0.12.0, zict-3.0.0 + +### dask/2022.10.0-foss-2022a + +This is a list of extensions included in the module: + +cloudpickle-2.2.0, dask-2022.10.0, dask-jobqueue-0.8.1, dask-mpi-2022.4.0, distributed-2022.10.0, docrep-0.3.2, fsspec-2021.7.0, HeapDict-1.0.1, locket-1.0.0, partd-1.3.0, tblib-1.7.0, toolz-0.12.0, zict-2.2.0 + +### dask/2022.1.0-foss-2021b + +This is a list of extensions included in the module: + +cloudpickle-2.0.0, dask-2022.1.0, dask-jobqueue-0.7.3, dask-mpi-2021.11.0, distributed-2022.1.0, docrep-0.3.2, HeapDict-1.0.1, locket-0.2.1, partd-1.2.0, tblib-1.7.0, toolz-0.11.2, zict-2.0.0 + +### dask/2021.9.1-foss-2021a + +This is a list of extensions included in the module: + +cloudpickle-2.0.0, dask-2021.9.1, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.9.1, docrep-0.3.2, fsspec-2021.10.1, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.2.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0 + +### dask/2021.2.0-intel-2020b + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, dask-2021.2.0, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.2.0, docrep-0.3.2, fsspec-0.8.7, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.1.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0 + +### dask/2021.2.0-fosscuda-2020b + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, dask-2021.2.0, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.2.0, docrep-0.3.2, fsspec-0.8.7, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.1.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0 + +### dask/2021.2.0-foss-2020b + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, dask-2021.2.0, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.2.0, docrep-0.3.2, fsspec-0.8.7, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.1.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0 + +### dask/2.18.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +cloudpickle-1.4.1, contextvars-2.4, dask-2.18.1, dask-jobqueue-0.7.1, dask-mpi-2.0.0, distributed-2.18.0, docrep-0.2.7, fsspec-0.7.4, HeapDict-1.0.1, immutables-0.14, locket-0.2.0, msgpack-1.0.0, partd-1.1.0, tblib-1.6.0, toolz-0.10.0, zict-2.0.0 + +### dask/2.18.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +cloudpickle-1.4.1, contextvars-2.4, dask-2.18.1, dask-jobqueue-0.7.1, dask-mpi-2.0.0, distributed-2.18.0, docrep-0.2.7, fsspec-0.7.4, HeapDict-1.0.1, immutables-0.14, locket-0.2.0, msgpack-1.0.0, partd-1.1.0, tblib-1.6.0, toolz-0.10.0, zict-2.0.0 + +### dask/2.8.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cloudpickle-1.2.2, dask-2.8.0, dask-jobqueue-0.7.0, dask-mpi-2.0.0, distributed-2.8.0, docrep-0.2.7, fsspec-0.6.0, HeapDict-1.0.1, locket-0.2.0, msgpack-0.6.2, partd-1.0.0, tblib-1.5.0, toolz-0.10.0, zict-1.0.0 + +### dask/2.8.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cloudpickle-1.2.2, dask-2.8.0, dask-jobqueue-0.7.0, dask-mpi-2.0.0, distributed-2.8.0, docrep-0.2.7, fsspec-0.6.0, HeapDict-1.0.1, locket-0.2.0, msgpack-0.6.2, partd-1.0.0, tblib-1.5.0, toolz-0.10.0, zict-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dbus-glib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dbus-glib.md index 3385b7213d73..cde4a23d662a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dbus-glib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dbus-glib.md @@ -6,6 +6,10 @@ hide: dbus-glib ========= + +D-Bus is a message bus system, a simple way for applications to talk to one another. + +https://dbus.freedesktop.org/doc/dbus-glib # Available modules @@ -17,7 +21,7 @@ To start using dbus-glib, load one of these modules using a `module load` comman module load dbus-glib/0.112-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dclone.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dclone.md index 750bff920954..9574a9291f44 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dclone.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dclone.md @@ -6,6 +6,10 @@ hide: dclone ====== + +Low level functions for implementing maximum likelihood estimating procedures for complex models using data cloning and Bayesian Markov chain Monte Carlo methods + +https://cran.r-project.org/web/packages/dclone # Available modules @@ -17,7 +21,7 @@ To start using dclone, load one of these modules using a `module load` command l module load dclone/2.3-0-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/deal.II.md b/mkdocs/docs/HPC/only/gent/available_software/detail/deal.II.md index 36e91735626d..98319e6a5da5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/deal.II.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/deal.II.md @@ -6,6 +6,10 @@ hide: deal.II ======= + +deal.II is a C++ program library targeted at the computational solution of partial differential equations using adaptive finite elements. + +https://www.dealii.org # Available modules @@ -17,7 +21,7 @@ To start using deal.II, load one of these modules using a `module load` command module load deal.II/9.3.3-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/decona.md b/mkdocs/docs/HPC/only/gent/available_software/detail/decona.md index 8880cfe9fc0c..380d3d2ea316 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/decona.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/decona.md @@ -6,6 +6,10 @@ hide: decona ====== + +fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads + +https://github.com/Saskia-Oosterbroek/decona # Available modules @@ -17,7 +21,7 @@ To start using decona, load one of these modules using a `module load` command l module load decona/0.1.2-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/deepTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/deepTools.md index 5ccbdc6df5dc..94d9c658d5a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/deepTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/deepTools.md @@ -6,6 +6,10 @@ hide: deepTools ========= + +deepTools is a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq. + +https://deeptools.readthedocs.io/ # Available modules @@ -17,9 +21,22 @@ To start using deepTools, load one of these modules using a `module load` comman module load deepTools/3.5.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |deepTools/3.5.1-foss-2021b|x|x|x|-|x|x| |deepTools/3.3.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### deepTools/3.5.1-foss-2021b + +This is a list of extensions included in the module: + +deepTools-3.5.1, deeptoolsintervals-0.1.9, numpydoc-1.2, py2bit-0.3.0 + +### deepTools/3.3.1-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +deepTools-3.3.1, deeptoolsintervals-0.1.9, numpydoc-0.9.1, py2bit-0.3.0, pyBigWig-0.3.17 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/deepdiff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/deepdiff.md index d1c7e5c785d7..77a08e0ec4d6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/deepdiff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/deepdiff.md @@ -6,6 +6,10 @@ hide: deepdiff ======== + +DeepDiff: Deep Difference of dictionaries, iterables and almost any other object recursively. + +https://zepworks.com/deepdiff/current/ # Available modules @@ -17,10 +21,29 @@ To start using deepdiff, load one of these modules using a `module load` command module load deepdiff/6.7.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |deepdiff/6.7.1-GCCcore-12.3.0|x|x|x|x|x|x| |deepdiff/6.7.1-GCCcore-12.2.0|x|x|x|x|x|x| |deepdiff/5.8.1-GCCcore-11.3.0|x|x|x|x|x|x| + + +### deepdiff/6.7.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +deepdiff-6.7.1, jsonpickle-3.0.2, ordered-set-4.1.0 + +### deepdiff/6.7.1-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +deepdiff-6.7.1, jsonpickle-3.0.2, ordered-set-4.1.0 + +### deepdiff/5.8.1-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +deepdiff-5.8.1, jsonpickle-2.2.0, ordered-set-4.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/detectron2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/detectron2.md index df47b5cd27b5..bfe253ce7dfd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/detectron2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/detectron2.md @@ -6,6 +6,10 @@ hide: detectron2 ========== + +Detectron2 is a platform for object detection, segmentation and other visual recognition tasks. + +https://github.com/facebookresearch/detectron2 # Available modules @@ -17,8 +21,15 @@ To start using detectron2, load one of these modules using a `module load` comma module load detectron2/0.6-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |detectron2/0.6-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### detectron2/0.6-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +black-21.4b2, CacheControl-0.12.11, cloudpickle-2.0.0, detectron2-0.6, editables-0.3, fvcore-0.1.5.post20220414, hatch-vcs-0.2.0, hatchling-0.23.0, iopath-0.1.9, mypy-extensions-0.4.3, packaging-21.3, pathspec-0.9.0, platformdirs-2.5.2, pluggy-1.0.0, poetry-1.1.13, poetry-core-1.0.8, portalocker-2.4.0, pytest-7.1.2, setuptools-scm-6.4.2, termcolor-1.1.0, tomli-2.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/devbio-napari.md b/mkdocs/docs/HPC/only/gent/available_software/detail/devbio-napari.md index 491f01b02f09..8800710439e0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/devbio-napari.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/devbio-napari.md @@ -6,6 +6,10 @@ hide: devbio-napari ============= + +A bundle of napari plugins useful for 3D+t image processing and analysis for studying developmental biology. + +https://github.com/haesleinhuepf/devbio-napari # Available modules @@ -17,9 +21,22 @@ To start using devbio-napari, load one of these modules using a `module load` co module load devbio-napari/0.10.1-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |devbio-napari/0.10.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |devbio-napari/0.10.1-foss-2022a|x|x|x|x|x|x| + + +### devbio-napari/0.10.1-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +apoc-0.12.0, comm-0.2.0, czifile-2019.7.2, debugpy-1.8.0, devbio-napari-0.10.1, funcsigs-1.0.2, imageio-ffmpeg-0.4.9, ipycanvas-0.13.1, ipyevents-2.0.2, ipykernel-6.27.1, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-5.5.0, jupytext-1.15.2, loguru-0.7.2, mdit_py_plugins-0.4.0, napari-accelerated-pixel-and-object-classification-0.14.1, napari-assistant-0.4.7, napari-blob-detection-0.0.2, napari-brightness-contrast-0.1.8, napari-clusters-plotter-0.7.3, napari-crop-0.1.9, napari-curtain-0.1.1, napari-czifile2-0.2.7, napari-folder-browser-0.1.3, napari-layer-details-display-0.1.5, napari-mouse-controls-0.1.3, napari-plot-profile-0.2.2, napari-plugin-search-0.1.4, napari-roi-0.1.8, napari-segment-blobs-and-things-with-membranes-0.3.7, napari-simpleitk-image-processing-0.4.5, napari-skimage-regionprops-0.10.1, napari-tabu-0.1.5, napari-time-slicer-0.5.0, napari-tools-menu-0.1.19, napari-workflow-inspector-0.2.2, napari-workflow-optimizer-0.1.4, napari-workflows-0.2.10, napari_animation-0.0.7, napari_pyclesperanto_assistant-0.22.1, napari_pystackreg-0.1.4, platformdirs-2.6.2, PlatyMatch-0.0.3, pyclesperanto_prototype-0.24.1, pyperclip-1.8.2, pystackreg-0.2.7, RedLionfish-0.9, reikna-0.8.0, stackview-0.7.2, the-segmentation-game-0.2.0, traitlets-5.14.0, transforms3d-0.4.1 + +### devbio-napari/0.10.1-foss-2022a + +This is a list of extensions included in the module: + +apoc-0.12.0, comm-0.2.0, czifile-2019.7.2, debugpy-1.8.0, devbio-napari-0.10.1, funcsigs-1.0.2, imageio-ffmpeg-0.4.9, ipycanvas-0.13.1, ipyevents-2.0.2, ipykernel-6.27.1, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-5.5.0, jupytext-1.15.2, loguru-0.7.2, mdit_py_plugins-0.4.0, napari-accelerated-pixel-and-object-classification-0.14.1, napari-assistant-0.4.7, napari-blob-detection-0.0.2, napari-brightness-contrast-0.1.8, napari-clusters-plotter-0.7.3, napari-crop-0.1.9, napari-curtain-0.1.1, napari-czifile2-0.2.7, napari-folder-browser-0.1.3, napari-layer-details-display-0.1.5, napari-mouse-controls-0.1.3, napari-plot-profile-0.2.2, napari-plugin-search-0.1.4, napari-roi-0.1.8, napari-segment-blobs-and-things-with-membranes-0.3.7, napari-simpleitk-image-processing-0.4.5, napari-skimage-regionprops-0.10.1, napari-tabu-0.1.5, napari-time-slicer-0.5.0, napari-tools-menu-0.1.19, napari-workflow-inspector-0.2.2, napari-workflow-optimizer-0.1.4, napari-workflows-0.2.10, napari_animation-0.0.7, napari_pyclesperanto_assistant-0.22.1, napari_pystackreg-0.1.4, platformdirs-2.6.2, PlatyMatch-0.0.3, pyclesperanto_prototype-0.24.1, pyperclip-1.8.2, pystackreg-0.2.7, RedLionfish-0.9, reikna-0.8.0, stackview-0.7.2, the-segmentation-game-0.2.0, traitlets-5.14.0, transforms3d-0.4.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dicom2nifti.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dicom2nifti.md index 02041e9e4b63..1c1907d0a006 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dicom2nifti.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dicom2nifti.md @@ -6,6 +6,10 @@ hide: dicom2nifti =========== + +Python library for converting dicom files to nifti + +https://github.com/icometrix/dicom2nifti # Available modules @@ -17,7 +21,7 @@ To start using dicom2nifti, load one of these modules using a `module load` comm module load dicom2nifti/2.3.0-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dijitso.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dijitso.md index b618ba9101bb..c7afa024c091 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dijitso.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dijitso.md @@ -6,6 +6,10 @@ hide: dijitso ======= + +dijitso is a Python module for distributed just-in-time shared library building. + +https://bitbucket.org/fenics-project/dijitso # Available modules @@ -17,7 +21,7 @@ To start using dijitso, load one of these modules using a `module load` command module load dijitso/2019.1.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dill.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dill.md index 34464d228834..2544b1a89c5b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dill.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dill.md @@ -6,6 +6,10 @@ hide: dill ==== + +dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy. + +https://pypi.org/project/dill/ # Available modules @@ -17,7 +21,7 @@ To start using dill, load one of these modules using a `module load` command lik module load dill/0.3.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dlib.md index a67a93e9304e..88b76b45054a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dlib.md @@ -6,6 +6,10 @@ hide: dlib ==== + +Dlib is a modern C++ toolkit containing machine learningalgorithms and tools for creating complex software in C++ to solve real worldproblems. It is used in both industry and academia in a wide range of domainsincluding robotics, embedded devices, mobile phones, and large high performancecomputing environments. + +https://github.com/davisking/dlib # Available modules @@ -17,7 +21,7 @@ To start using dlib, load one of these modules using a `module load` command lik module load dlib/19.22-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dm-haiku.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dm-haiku.md index 0a854dd01103..ea34ffea9d1b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dm-haiku.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dm-haiku.md @@ -6,6 +6,10 @@ hide: dm-haiku ======== + +Haiku is a simple neural network library for JAX developed by some of the authors of Sonnet, a neuralnetwork library for TensorFlow. + +https://github.com/deepmind/dm-haiku # Available modules @@ -17,8 +21,15 @@ To start using dm-haiku, load one of these modules using a `module load` command module load dm-haiku/0.0.9-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |dm-haiku/0.0.9-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### dm-haiku/0.0.9-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +dm-haiku-0.0.9, jmp-0.0.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dm-tree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dm-tree.md index 2fd718d04d64..4adbfff47e13 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dm-tree.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dm-tree.md @@ -6,6 +6,10 @@ hide: dm-tree ======= + +dm-tree provides tree, a library for working with nested data structures. In a way,tree generalizes the builtin map function which only supports flat sequences, andallows to apply a function to each "leaf" preserving the overall structure. + +https://github.com/deepmind/tree # Available modules @@ -17,7 +21,7 @@ To start using dm-tree, load one of these modules using a `module load` command module load dm-tree/0.1.8-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dorado.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dorado.md index a5288d62f3db..44cf8aa1c572 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dorado.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dorado.md @@ -6,6 +6,10 @@ hide: dorado ====== + +Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads. + +https://github.com/nanoporetech/dorado # Available modules @@ -17,7 +21,7 @@ To start using dorado, load one of these modules using a `module load` command l module load dorado/0.5.1-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/double-conversion.md b/mkdocs/docs/HPC/only/gent/available_software/detail/double-conversion.md index f52e3192920c..3ce842c96ed8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/double-conversion.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/double-conversion.md @@ -6,6 +6,10 @@ hide: double-conversion ================= + +Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles. + +https://github.com/google/double-conversion # Available modules @@ -17,7 +21,7 @@ To start using double-conversion, load one of these modules using a `module load module load double-conversion/3.3.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/drmaa-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/drmaa-python.md index 90005136d0d6..9a6ef31517e9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/drmaa-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/drmaa-python.md @@ -6,6 +6,10 @@ hide: drmaa-python ============ + +Distributed Resource Management Application API (DRMAA) bindings for Python. + +https://github.com/pygridtools/drmaa-python # Available modules @@ -17,7 +21,7 @@ To start using drmaa-python, load one of these modules using a `module load` com module load drmaa-python/0.7.9-GCCcore-12.2.0-slurm ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dtcwt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dtcwt.md index 39fd3a7d8c69..54595b85066f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dtcwt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dtcwt.md @@ -6,6 +6,10 @@ hide: dtcwt ===== + +Dual-Tree Complex Wavelet Transform library for Python + +https://github.com/rjw57/dtcwt # Available modules @@ -17,7 +21,7 @@ To start using dtcwt, load one of these modules using a `module load` command li module load dtcwt/0.12.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/duplex-tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/duplex-tools.md index 9300ab4b7474..37f63ec89497 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/duplex-tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/duplex-tools.md @@ -6,6 +6,10 @@ hide: duplex-tools ============ + +Duplex Tools contains a set of utilities for dealing with Duplex sequencing data. Tools are provided to identify and prepare duplex pairs for basecalling by Dorado (recommended) and Guppy, and for recovering simplex basecalls from incorrectly concatenated pairs. + +https://github.com/nanoporetech/duplex-tools # Available modules @@ -17,9 +21,22 @@ To start using duplex-tools, load one of these modules using a `module load` com module load duplex-tools/0.3.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |duplex-tools/0.3.3-foss-2022a|x|x|x|x|x|x| |duplex-tools/0.3.1-foss-2022a|x|x|x|x|x|x| + + +### duplex-tools/0.3.3-foss-2022a + +This is a list of extensions included in the module: + +duplex-tools-0.3.3, iso8601-1.1.0, mappy-2.24, natsort-8.4.0, pyfastx-1.1.0, vbz-h5py-plugin-1.0.1 + +### duplex-tools/0.3.1-foss-2022a + +This is a list of extensions included in the module: + +duplex-tools-0.3.1, iso8601-1.1.0, lib-pod5-0.1.5, mappy-2.24, natsort-8.3.1, pod5-0.1.5, pyfastx-0.9.1, vbz-h5py-plugin-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dynesty.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dynesty.md index 0b787fea0e52..618996685805 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dynesty.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dynesty.md @@ -6,6 +6,10 @@ hide: dynesty ======= + +dynesty is a Pure Python, MIT-licensed Dynamic Nested Sampling packagefor estimating Bayesian posteriors and evidences. + +https://dynesty.readthedocs.io/ # Available modules @@ -17,8 +21,15 @@ To start using dynesty, load one of these modules using a `module load` command module load dynesty/2.1.3-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |dynesty/2.1.3-foss-2023a|x|x|x|x|x|x| + + +### dynesty/2.1.3-foss-2023a + +This is a list of extensions included in the module: + +coverage-6.5.0, coveralls-3.3.1, dynesty-2.1.3, pytest-cov-4.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/eSpeak-NG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/eSpeak-NG.md index 66f7dca14ef2..7fed9b68b699 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/eSpeak-NG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/eSpeak-NG.md @@ -6,6 +6,10 @@ hide: eSpeak-NG ========= + +The eSpeak NG is a compact open source software text-to-speech synthesizerfor Linux, Windows, Android and other operating systems.It supports more than 100 languages and accents.It is based on the eSpeak engine created by Jonathan Duddington. + +https://github.com/espeak-ng/espeak-ng # Available modules @@ -17,7 +21,7 @@ To start using eSpeak-NG, load one of these modules using a `module load` comman module load eSpeak-NG/1.50-gompi-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ebGSEA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ebGSEA.md index d187053d90a5..5347f624ba1e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ebGSEA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ebGSEA.md @@ -6,6 +6,10 @@ hide: ebGSEA ====== + +Gene Set Enrichment Analysis is one of the most common tasks in the analysis of omic data, and is critical for biological interpretation. In the context of Epigenome Wide Association Studies (EWAS), which typically rank individual cytosines according to the level of differential methylation, enrichment analysis of biological pathways is challenging due to differences in CpG/probe density between genes. + +https://github.com/aet21/ebGSEA # Available modules @@ -17,8 +21,15 @@ To start using ebGSEA, load one of these modules using a `module load` command l module load ebGSEA/0.1.0-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |ebGSEA/0.1.0-foss-2022a-R-4.2.1|x|x|x|x|x|x| + + +### ebGSEA/0.1.0-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +ebGSEA-0.1.0, kpmt-0.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ecCodes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ecCodes.md index 85ba912e080b..25005b1899cb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ecCodes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ecCodes.md @@ -6,6 +6,10 @@ hide: ecCodes ======= + +ecCodes is a package developed by ECMWF which provides an application programming interface and a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2, WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding). + +https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home # Available modules @@ -17,7 +21,7 @@ To start using ecCodes, load one of these modules using a `module load` command module load ecCodes/2.24.2-gompi-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/edlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/edlib.md index 13947cdb8dbe..4029794b11da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/edlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/edlib.md @@ -6,6 +6,10 @@ hide: edlib ===== + +Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance. + +https://martinsos.github.io/edlib # Available modules @@ -17,7 +21,7 @@ To start using edlib, load one of these modules using a `module load` command li module load edlib/1.3.9-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/eggnog-mapper.md b/mkdocs/docs/HPC/only/gent/available_software/detail/eggnog-mapper.md index 40a4c765eb21..d5a168ea7363 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/eggnog-mapper.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/eggnog-mapper.md @@ -6,6 +6,10 @@ hide: eggnog-mapper ============= + +EggNOG-mapper is a tool for fast functional annotation of novelsequences. It uses precomputed orthologous groups and phylogenies from theeggNOG database (http://eggnog5.embl.de) to transfer functional information fromfine-grained orthologs only. Common uses of eggNOG-mapper include the annotationof novel genomes, transcriptomes or even metagenomic gene catalogs. + +https://github.com/eggnogdb/eggnog-mapper # Available modules @@ -17,7 +21,7 @@ To start using eggnog-mapper, load one of these modules using a `module load` co module load eggnog-mapper/2.1.10-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/einops.md b/mkdocs/docs/HPC/only/gent/available_software/detail/einops.md index 0248aed13037..8f2d32e4f96c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/einops.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/einops.md @@ -6,6 +6,10 @@ hide: einops ====== + +Flexible and powerful tensor operations for readable and reliable code.Supports numpy, pytorch, tensorflow, jax, and others. + +https://einops.rocks/ # Available modules @@ -17,7 +21,7 @@ To start using einops, load one of these modules using a `module load` command l module load einops/0.4.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/elfutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/elfutils.md index d5108c0a3e3d..c5cb1ad46bc5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/elfutils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/elfutils.md @@ -6,6 +6,10 @@ hide: elfutils ======== + +The elfutils project provides libraries and tools for ELF files and DWARF data. + +https://elfutils.org/ # Available modules @@ -17,7 +21,7 @@ To start using elfutils, load one of these modules using a `module load` command module load elfutils/0.187-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/elprep.md b/mkdocs/docs/HPC/only/gent/available_software/detail/elprep.md index 2c441222945d..cdf6d224152e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/elprep.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/elprep.md @@ -6,6 +6,10 @@ hide: elprep ====== + +elPrep is a high-performance tool for analyzing .sam/.bam files (up to and including variant calling) in sequencing pipelines. + +https://github.com/ExaScience/elprep # Available modules @@ -17,7 +21,7 @@ To start using elprep, load one of these modules using a `module load` command l module load elprep/5.1.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/enchant-2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/enchant-2.md index cd45fc46400b..8543fcbea35b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/enchant-2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/enchant-2.md @@ -6,6 +6,10 @@ hide: enchant-2 ========= + +Enchant aims to provide a simple but comprehensive abstraction for dealingwith different spell checking libraries in a consistent way. A client, suchas a text editor or word processor, need not know anything about a specificspell-checker, and since all back-ends are plugins, new spell-checkers canbe added without needing any change to the program using Enchant. + +https://github.com/AbiWord/enchant # Available modules @@ -17,7 +21,7 @@ To start using enchant-2, load one of these modules using a `module load` comman module load enchant-2/2.3.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/epiScanpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/epiScanpy.md index ebf38056076e..9bc846b05a9e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/epiScanpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/epiScanpy.md @@ -6,6 +6,10 @@ hide: epiScanpy ========= + +EpiScanpy is a toolkit to analyse single-cell open chromatin(scATAC-seq) and single-cell DNA methylation (for example scBS-seq)data. EpiScanpy is the epigenomic extension of the very popular scRNA-seqanalysis tool Scanpy (Genome Biology, 2018) [Wolf18]. + +https://github.com/colomemaria/episcanpy # Available modules @@ -17,9 +21,22 @@ To start using epiScanpy, load one of these modules using a `module load` comman module load epiScanpy/0.4.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |epiScanpy/0.4.0-foss-2022a|x|x|x|x|x|x| |epiScanpy/0.3.1-foss-2021a|-|x|x|-|x|x| + + +### epiScanpy/0.4.0-foss-2022a + +This is a list of extensions included in the module: + +bamnostic-1.1.8, dunamai-1.16.0, episcanpy-0.4.0, get_version-3.5.4, kneed-0.8.2, legacy-api-wrap-1.2, pyliftover-0.4, python-louvain-0.16 + +### epiScanpy/0.3.1-foss-2021a + +This is a list of extensions included in the module: + +bamnostic-1.1.7, episcanpy-0.3.1, get_version-3.2, legacy-api-wrap-1.2, pyliftover-0.4, python-louvain-0.15 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/exiv2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/exiv2.md index d2d345481ad8..b63e05eba28a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/exiv2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/exiv2.md @@ -6,6 +6,10 @@ hide: exiv2 ===== + +Exiv2 is a Cross-platform C++ library and a command line utility to manage image metadata. + +https://exiv2.org # Available modules @@ -17,7 +21,7 @@ To start using exiv2, load one of these modules using a `module load` command li module load exiv2/0.27.5-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/expat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/expat.md index bb64c7673353..ad7a52684e38 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/expat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/expat.md @@ -6,6 +6,10 @@ hide: expat ===== + +Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags) + +https://libexpat.github.io # Available modules @@ -17,7 +21,7 @@ To start using expat, load one of these modules using a `module load` command li module load expat/2.5.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/expecttest.md b/mkdocs/docs/HPC/only/gent/available_software/detail/expecttest.md index 1c328f3fe3c5..f2a3250467a8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/expecttest.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/expecttest.md @@ -6,6 +6,10 @@ hide: expecttest ========== + +This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output. + +https://github.com/ezyang/expecttest # Available modules @@ -17,7 +21,7 @@ To start using expecttest, load one of these modules using a `module load` comma module load expecttest/0.1.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fasta-reader.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fasta-reader.md index aed65b3e1518..031014fbf132 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fasta-reader.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fasta-reader.md @@ -6,6 +6,10 @@ hide: fasta-reader ============ + +FASTA file reader + +https://github.com/EBI-Metagenomics/fasta-reader-py # Available modules @@ -17,8 +21,15 @@ To start using fasta-reader, load one of these modules using a `module load` com module load fasta-reader/3.0.2-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |fasta-reader/3.0.2-GCC-12.3.0|x|x|x|x|x|x| + + +### fasta-reader/3.0.2-GCC-12.3.0 + +This is a list of extensions included in the module: + +fasta-reader-3.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fastahack.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fastahack.md index d470f3c96c9b..8214e29cece7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fastahack.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fastahack.md @@ -6,6 +6,10 @@ hide: fastahack ========= + +Utilities for indexing and sequence extraction from FASTA files. + +https://github.com/ekg/fastahack # Available modules @@ -17,7 +21,7 @@ To start using fastahack, load one of these modules using a `module load` comman module load fastahack/1.0.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fastai.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fastai.md index 4d00e341f485..52b5c95dad6e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fastai.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fastai.md @@ -6,6 +6,10 @@ hide: fastai ====== + +The fastai deep learning library. + +https://www.fast.ai/ # Available modules @@ -17,8 +21,15 @@ To start using fastai, load one of these modules using a `module load` command l module load fastai/2.7.10-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |fastai/2.7.10-foss-2022a|x|x|x|x|x|x| + + +### fastai/2.7.10-foss-2022a + +This is a list of extensions included in the module: + +fastai-2.7.10, fastcore-1.5.27, fastdownload-0.0.7, fastprogress-1.0.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fastp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fastp.md index a6346883824f..8f463d8c2244 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fastp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fastp.md @@ -6,6 +6,10 @@ hide: fastp ===== + +A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance. + +https://github.com/OpenGene/fastp # Available modules @@ -17,7 +21,7 @@ To start using fastp, load one of these modules using a `module load` command li module load fastp/0.23.2-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fermi-lite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fermi-lite.md index 6439b5929804..b51a9fd1436d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fermi-lite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fermi-lite.md @@ -6,6 +6,10 @@ hide: fermi-lite ========== + +Standalone C library for assembling Illumina short reads in small regions. + +https://github.com/lh3/fermi-lite # Available modules @@ -17,7 +21,7 @@ To start using fermi-lite, load one of these modules using a `module load` comma module load fermi-lite/20190320-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/festival.md b/mkdocs/docs/HPC/only/gent/available_software/detail/festival.md index a4923013e44c..51193c8b9d5a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/festival.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/festival.md @@ -6,6 +6,10 @@ hide: festival ======== + +University of Edinburgh's Festival Speech Synthesis Systems is a free softwaremulti-lingual speech synthesis workbench that runs on multiple-platformsoffering black box text to speech, as well as an open architecture forresearch in speech synthesis.It designed as a component of large speech technology systems. + +['http://festvox.org/festival/'] # Available modules @@ -17,7 +21,7 @@ To start using festival, load one of these modules using a `module load` command module load festival/2.5.0-GCCcore-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fetchMG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fetchMG.md index 4230c3c9cc6c..cdedf70a8cc0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fetchMG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fetchMG.md @@ -6,6 +6,10 @@ hide: fetchMG ======= + +The program “fetchMG” was written to extract the 40 MGs from genomes and metagenomes in an easy and accurate manner. + +https://vm-lux.embl.de/~mende/fetchMG/about.html # Available modules @@ -17,7 +21,7 @@ To start using fetchMG, load one of these modules using a `module load` command module load fetchMG/1.0-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ffnvcodec.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ffnvcodec.md index f4ffee11164c..29d67075078a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ffnvcodec.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ffnvcodec.md @@ -6,6 +6,10 @@ hide: ffnvcodec ========= + +FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present(picked up dynamically). + +https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git # Available modules @@ -17,7 +21,7 @@ To start using ffnvcodec, load one of these modules using a `module load` comman module load ffnvcodec/12.0.16.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/file.md b/mkdocs/docs/HPC/only/gent/available_software/detail/file.md index 793f59edb801..a97041115dec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/file.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/file.md @@ -6,6 +6,10 @@ hide: file ==== + +The file command is 'a file type guesser', that is, a command-line tool that tells you in words what kind of data a file contains. + +https://www.darwinsys.com/file/ # Available modules @@ -17,7 +21,7 @@ To start using file, load one of these modules using a `module load` command lik module load file/5.43-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/filevercmp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/filevercmp.md index 8ac3c651e5f2..ff9a52e5d750 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/filevercmp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/filevercmp.md @@ -6,6 +6,10 @@ hide: filevercmp ========== + +filevercmp function as in sort --version-sort. + +https://github.com/ekg/filevercmp # Available modules @@ -17,7 +21,7 @@ To start using filevercmp, load one of these modules using a `module load` comma module load filevercmp/20191210-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/finder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/finder.md index bfe19bc7f3b7..63fc27d77415 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/finder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/finder.md @@ -6,6 +6,10 @@ hide: finder ====== + +finder is a gene annotator pipeline which automates the process of downloading short reads,aligning them and using the assembled transcripts to generate gene annotations. + +https://github.com/sagnikbanerjee15/Finder/ # Available modules @@ -17,7 +21,7 @@ To start using finder, load one of these modules using a `module load` command l module load finder/1.1.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flair-NLP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flair-NLP.md index 601d307ac883..76f0b672a7bb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flair-NLP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flair-NLP.md @@ -6,6 +6,10 @@ hide: flair-NLP ========= + +A very simple framework for state-of-the-art NLP + +https://github.com/flairNLP/flair # Available modules @@ -17,9 +21,22 @@ To start using flair-NLP, load one of these modules using a `module load` comman module load flair-NLP/0.11.3-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |flair-NLP/0.11.3-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| |flair-NLP/0.11.3-foss-2021a|x|x|x|-|x|x| + + +### flair-NLP/0.11.3-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +bpemb-0.3.3, conllu-4.4.2, Deprecated-1.2.13, flair-0.11.3, ftfy-6.1.1, gdown-4.4.0, huggingface_hub-0.7.0, importlib_metadata-3.10.1, Janome-0.4.2, konoha-4.6.5, langdetect-1.0.9, mpld3-0.5.8, overrides-3.1.0, pptree-3.1, segtok-1.5.11, sqlitedict-2.0.0, transformers-4.19.2, Wikipedia-API-0.5.4, wrapt-1.14.1 + +### flair-NLP/0.11.3-foss-2021a + +This is a list of extensions included in the module: + +bpemb-0.3.3, conllu-4.4.2, Deprecated-1.2.13, flair-0.11.3, ftfy-6.1.1, gdown-4.4.0, huggingface_hub-0.7.0, importlib_metadata-3.10.1, Janome-0.4.2, konoha-4.6.5, langdetect-1.0.9, mpld3-0.5.8, overrides-3.1.0, pptree-3.1, segtok-1.5.11, sqlitedict-2.0.0, transformers-4.19.2, Wikipedia-API-0.5.4, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers-python.md index 3b53e8c1b92c..e0908757b126 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers-python.md @@ -6,6 +6,10 @@ hide: flatbuffers-python ================== + +Python Flatbuffers runtime library. + +https://github.com/google/flatbuffers/ # Available modules @@ -17,7 +21,7 @@ To start using flatbuffers-python, load one of these modules using a `module loa module load flatbuffers-python/23.5.26-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers.md index b48c7c99a79e..f39ae5f7d2b7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers.md @@ -6,6 +6,10 @@ hide: flatbuffers =========== + +FlatBuffers: Memory Efficient Serialization Library + +https://github.com/google/flatbuffers/ # Available modules @@ -17,7 +21,7 @@ To start using flatbuffers, load one of these modules using a `module load` comm module load flatbuffers/23.5.26-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -29,3 +33,10 @@ module load flatbuffers/23.5.26-GCCcore-12.3.0 |flatbuffers/1.12.0-GCCcore-10.2.0|x|x|x|x|x|x| |flatbuffers/1.12.0-GCCcore-9.3.0|-|x|x|-|x|x| |flatbuffers/1.12.0-GCCcore-8.3.0|-|x|x|-|x|x| + + +### flatbuffers/2.0.7-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +flatbuffers-2.0.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flex.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flex.md index 2c693b4dbc9e..bdf1837b3c6c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flex.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flex.md @@ -6,6 +6,10 @@ hide: flex ==== + +Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. + +http://flex.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using flex, load one of these modules using a `module load` command lik module load flex/2.6.4-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flit.md index 9a409ca262d7..a3f372a2803a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flit.md @@ -6,6 +6,10 @@ hide: flit ==== + +A simple packaging tool for simple packages. + +https://github.com/pypa/flit # Available modules @@ -17,9 +21,22 @@ To start using flit, load one of these modules using a `module load` command lik module load flit/3.9.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |flit/3.9.0-GCCcore-13.2.0|x|x|x|x|x|x| |flit/3.9.0-GCCcore-12.3.0|x|x|x|x|x|x| + + +### flit/3.9.0-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +certifi-2023.7.22, charset-normalizer-3.3.1, docutils-0.20.1, flit-3.9.0, flit_scm-1.7.0, idna-3.4, packaging-23.2, requests-2.31.0, setuptools-scm-8.0.4, tomli_w-1.0.0, typing_extensions-4.8.0, urllib3-2.0.7 + +### flit/3.9.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +certifi-2023.5.7, charset-normalizer-3.1.0, docutils-0.20.1, flit-3.9.0, flit_scm-1.7.0, idna-3.4, packaging-23.1, requests-2.31.0, setuptools_scm-7.1.0, tomli_w-1.0.0, typing_extensions-4.6.3, urllib3-1.26.16 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flowFDA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flowFDA.md index c12fd02a7f9e..79c047f8032f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flowFDA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flowFDA.md @@ -6,6 +6,10 @@ hide: flowFDA ======= + +R package for analysing flow cytometry experiments with model based clustering, functional principal component analysis + +https://github.com/FMKerckhof/flowFDA # Available modules @@ -17,7 +21,7 @@ To start using flowFDA, load one of these modules using a `module load` command module load flowFDA/0.99-20220602-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fmt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fmt.md index 109fe980f2f5..3bdc515efa0a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fmt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fmt.md @@ -6,6 +6,10 @@ hide: fmt === + +fmt (formerly cppformat) is an open-source formatting library. + +http://fmtlib.net/ # Available modules @@ -17,7 +21,7 @@ To start using fmt, load one of these modules using a `module load` command like module load fmt/10.1.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fontconfig.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fontconfig.md index 2e7bfd7df181..5c27b4b311c5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fontconfig.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fontconfig.md @@ -6,6 +6,10 @@ hide: fontconfig ========== + +Fontconfig is a library designed to provide system-wide font configuration, customization and application access. + +http://www.freedesktop.org/software/fontconfig # Available modules @@ -17,7 +21,7 @@ To start using fontconfig, load one of these modules using a `module load` comma module load fontconfig/2.14.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/foss.md b/mkdocs/docs/HPC/only/gent/available_software/detail/foss.md index 29a5480c3c56..75acaae56651 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/foss.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/foss.md @@ -6,6 +6,10 @@ hide: foss ==== + +GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. + +https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain # Available modules @@ -17,7 +21,7 @@ To start using foss, load one of these modules using a `module load` command lik module load foss/2023b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fosscuda.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fosscuda.md index 94f863a5de4e..67e62ee12d34 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fosscuda.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fosscuda.md @@ -6,6 +6,10 @@ hide: fosscuda ======== + +GCC based compiler toolchain __with CUDA support__, and including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. + +(none) # Available modules @@ -17,7 +21,7 @@ To start using fosscuda, load one of these modules using a `module load` command module load fosscuda/2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/freebayes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/freebayes.md index cbc83364da6a..34d8f85ddff8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/freebayes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/freebayes.md @@ -6,6 +6,10 @@ hide: freebayes ========= + +Bayesian haplotype-based genetic polymorphism discovery and genotyping. + +https://github.com/freebayes/freebayes # Available modules @@ -17,7 +21,7 @@ To start using freebayes, load one of these modules using a `module load` comman module load freebayes/1.3.5-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/freeglut.md b/mkdocs/docs/HPC/only/gent/available_software/detail/freeglut.md index 88e15d3f2a94..22fc529182c5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/freeglut.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/freeglut.md @@ -6,6 +6,10 @@ hide: freeglut ======== + +freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library. + +http://freeglut.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using freeglut, load one of these modules using a `module load` command module load freeglut/3.2.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/freetype-py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/freetype-py.md index a64040ef0c19..0d993b9b9a0e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/freetype-py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/freetype-py.md @@ -6,6 +6,10 @@ hide: freetype-py =========== + +Python binding for the freetype library + +https://github.com/rougier/freetype-py # Available modules @@ -17,7 +21,7 @@ To start using freetype-py, load one of these modules using a `module load` comm module load freetype-py/2.2.0-GCCcore-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/freetype.md b/mkdocs/docs/HPC/only/gent/available_software/detail/freetype.md index da28b1898b4a..c8bac4efa9c6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/freetype.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/freetype.md @@ -6,6 +6,10 @@ hide: freetype ======== + +FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well. + +http://freetype.org # Available modules @@ -17,7 +21,7 @@ To start using freetype, load one of these modules using a `module load` command module load freetype/2.13.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fsom.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fsom.md index 6ddfdf8195b5..f0e4a335cf12 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fsom.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fsom.md @@ -6,6 +6,10 @@ hide: fsom ==== + +A tiny C library for managing SOM (Self-Organizing Maps) neural networks. + +https://github.com/ekg/fsom # Available modules @@ -17,7 +21,7 @@ To start using fsom, load one of these modules using a `module load` command lik module load fsom/20151117-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/funannotate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/funannotate.md index d1f42392df11..70e887c4cd3f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/funannotate.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/funannotate.md @@ -6,6 +6,10 @@ hide: funannotate =========== + +funannotate is a pipeline for genome annotation (built specifically for fungi, but will also work with higher eukaryotes) + +https://funannotate.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using funannotate, load one of these modules using a `module load` comm module load funannotate/1.8.13-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |funannotate/1.8.13-foss-2021b|x|x|x|x|x|x| + + +### funannotate/1.8.13-foss-2021b + +This is a list of extensions included in the module: + +distro-1.8.0, funannotate-1.8.13, natsort-8.3.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/g2clib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/g2clib.md index 6df6061c009b..d8ad1753f984 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/g2clib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/g2clib.md @@ -6,6 +6,10 @@ hide: g2clib ====== + +Library contains GRIB2 encoder/decoder ('C' version). + +https://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/ # Available modules @@ -17,7 +21,7 @@ To start using g2clib, load one of these modules using a `module load` command l module load g2clib/1.6.0-GCCcore-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/g2lib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/g2lib.md index ec3b29d5a3f1..ef733fe8ae80 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/g2lib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/g2lib.md @@ -6,6 +6,10 @@ hide: g2lib ===== + +Library contains GRIB2 encoder/decoder and search/indexing routines. + +https://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/ # Available modules @@ -17,7 +21,7 @@ To start using g2lib, load one of these modules using a `module load` command li module load g2lib/3.1.0-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/g2log.md b/mkdocs/docs/HPC/only/gent/available_software/detail/g2log.md index 29eaeb2971e7..77c485058c72 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/g2log.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/g2log.md @@ -6,6 +6,10 @@ hide: g2log ===== + +g2log, efficient asynchronous logger using C++11 + +https://sites.google.com/site/kjellhedstrom2//g2log-efficient-background-io-processign-with-c11 # Available modules @@ -17,7 +21,7 @@ To start using g2log, load one of these modules using a `module load` command li module load g2log/1.0-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/garnett.md b/mkdocs/docs/HPC/only/gent/available_software/detail/garnett.md index 464fc547082d..b6c7a7371750 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/garnett.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/garnett.md @@ -6,6 +6,10 @@ hide: garnett ======= + +Garnett is a software package that faciliates automated cell type classification from single-cellexpression data. + +https://cole-trapnell-lab.github.io/garnett # Available modules @@ -17,8 +21,15 @@ To start using garnett, load one of these modules using a `module load` command module load garnett/0.1.20-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |garnett/0.1.20-foss-2020b-R-4.0.3|-|x|x|x|x|x| + + +### garnett/0.1.20-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: + +garnett-0.1.20, rly-1.6.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gawk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gawk.md index a2cfcb1432d6..1dfe7b596e9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gawk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gawk.md @@ -6,6 +6,10 @@ hide: gawk ==== + +The awk utility interprets a special-purpose programming language that makes it possible to handlesimple data-reformatting jobs with just a few lines of code. + +https://www.gnu.org/software/gawk # Available modules @@ -17,7 +21,7 @@ To start using gawk, load one of these modules using a `module load` command lik module load gawk/5.1.0-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gbasis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gbasis.md index 8142248caa3c..1f46522029b9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gbasis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gbasis.md @@ -6,6 +6,10 @@ hide: gbasis ====== + +Python library for analytical evaluation and integration of Gaussian-type basis functions and related quantities. + +https://github.com/theochem/gbasis # Available modules @@ -17,7 +21,7 @@ To start using gbasis, load one of these modules using a `module load` command l module load gbasis/20210904-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gc.md index a742e23738b4..5566568692ac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gc.md @@ -6,6 +6,10 @@ hide: gc == + +The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new. + +https://hboehm.info/gc/ # Available modules @@ -17,7 +21,7 @@ To start using gc, load one of these modules using a `module load` command like: module load gc/8.2.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gcccuda.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gcccuda.md index 072faf01755a..1d79cf2b4c2c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gcccuda.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gcccuda.md @@ -6,6 +6,10 @@ hide: gcccuda ======= + +GNU Compiler Collection (GCC) based compiler toolchain, along with CUDA toolkit. + +(none) # Available modules @@ -17,7 +21,7 @@ To start using gcccuda, load one of these modules using a `module load` command module load gcccuda/2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gcloud.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gcloud.md index ad6146712cca..67eb22bbf501 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gcloud.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gcloud.md @@ -6,6 +6,10 @@ hide: gcloud ====== + +Libraries and tools for interacting with Google Cloud products and services. + +https://cloud.google.com/sdk # Available modules @@ -17,7 +21,7 @@ To start using gcloud, load one of these modules using a `module load` command l module load gcloud/382.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gcsfs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gcsfs.md index a92c488662b7..a5a302dcc777 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gcsfs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gcsfs.md @@ -6,6 +6,10 @@ hide: gcsfs ===== + +Pythonic file-system interface for Google Cloud Storage. + +https://github.com/fsspec/gcsfs # Available modules @@ -17,8 +21,15 @@ To start using gcsfs, load one of these modules using a `module load` command li module load gcsfs/2023.12.2.post1-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |gcsfs/2023.12.2.post1-foss-2023a|x|x|x|x|x|x| + + +### gcsfs/2023.12.2.post1-foss-2023a + +This is a list of extensions included in the module: + +cachetools-5.3.2, decorator-5.1.1, fsspec-2023.12.2, g-0.0.3, gcsfs-2023.12.2.post1, google-api-core-2.15.0, google-auth-2.26.2, google-auth-oauthlib-1.2.0, google-cloud-core-2.4.1, google-cloud-storage-2.14.0, google-crc32c-1.5.0, google-resumable-media-2.7.0, googleapis-common-protos-1.62.0, oauthlib-3.2.2, pyasn1-modules-0.3.0, requests-2.31.0, requests-oauthlib-1.3.1, rsa-4.9 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gdbm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gdbm.md index 3a6ea2db0a06..f77503998c1a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gdbm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gdbm.md @@ -6,6 +6,10 @@ hide: gdbm ==== + +GNU dbm (or GDBM, for short) is a library of database functions that use extensible hashing and work similar to the standard UNIX dbm. These routines are provided to a programmer needing to create and manipulate a hashed database. + +https://www.gnu.org.ua/software/gdbm/ # Available modules @@ -17,7 +21,7 @@ To start using gdbm, load one of these modules using a `module load` command lik module load gdbm/1.18.1-foss-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gdc-client.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gdc-client.md index e291c90e4a4a..9da1a3aeb1d8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gdc-client.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gdc-client.md @@ -6,6 +6,10 @@ hide: gdc-client ========== + +The gdc-client provides several convenience functions over the GDC API which provides general download/upload via HTTPS. + +https://gdc.nci.nih.gov/access-data/gdc-data-transfer-tool # Available modules @@ -17,8 +21,15 @@ To start using gdc-client, load one of these modules using a `module load` comma module load gdc-client/1.6.0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |gdc-client/1.6.0-GCCcore-10.2.0|x|x|x|x|-|x| + + +### gdc-client/1.6.0-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +cryptography-2.8, gdc-client-1.6.0, idna-2.8, intervaltree-3.0.2, jsonschema-2.6.0, lxml-4.4.2, ndg-httpsclient-0.5.0, progressbar2-3.43.1, pyasn1-0.4.3, pyOpenSSL-18.0.0, python-utils-2.5.6, PyYAML-3.13, requests-2.22.0, termcolor-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gengetopt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gengetopt.md index 476b70d0c428..8118653c201c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gengetopt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gengetopt.md @@ -6,6 +6,10 @@ hide: gengetopt ========= + +Gengetopt is a tool to write command line option parsing code for C programs. + +https://www.gnu.org/software/gengetopt/gengetopt.html # Available modules @@ -17,7 +21,7 @@ To start using gengetopt, load one of these modules using a `module load` comman module load gengetopt/2.23-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/genomepy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/genomepy.md index ee79b8e2072b..54ab7abdc866 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/genomepy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/genomepy.md @@ -6,6 +6,10 @@ hide: genomepy ======== + +genomepy is designed to provide a simple and straightforward way to download and use genomic data + +https://github.com/vanheeringen-lab/genomepy # Available modules @@ -17,8 +21,15 @@ To start using genomepy, load one of these modules using a `module load` command module load genomepy/0.15.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |genomepy/0.15.0-foss-2022a|x|x|x|x|x|x| + + +### genomepy/0.15.0-foss-2022a + +This is a list of extensions included in the module: + +diskcache-5.4.0, genomepy-0.15.0, loguru-0.6.0, mysql-connector-python-8.0.32, norns-0.1.6, pyfaidx-0.7.2.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/genozip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/genozip.md index 88d756603b67..7c258d490295 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/genozip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/genozip.md @@ -6,6 +6,10 @@ hide: genozip ======= + +Genozip is a compressor for genomic files - it compresses FASTQ, SAM/BAM/CRAM, VCF, FASTA and others. + +https://genozip.com # Available modules @@ -17,7 +21,7 @@ To start using genozip, load one of these modules using a `module load` command module load genozip/13.0.5-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gensim.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gensim.md index a31f29ac223d..de1b4edc4c78 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gensim.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gensim.md @@ -6,6 +6,10 @@ hide: gensim ====== + +Gensim is a Python library for topic modelling, document indexing and similarity retrieval with large corpora. + +https://radimrehurek.com/gensim # Available modules @@ -17,10 +21,29 @@ To start using gensim, load one of these modules using a `module load` command l module load gensim/4.2.0-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |gensim/4.2.0-foss-2021a|x|x|x|-|x|x| |gensim/3.8.3-intel-2020b|-|x|x|-|x|x| |gensim/3.8.3-foss-2020b|-|x|x|x|x|x| + + +### gensim/4.2.0-foss-2021a + +This is a list of extensions included in the module: + +gensim-4.2.0, smart_open-6.0.0 + +### gensim/3.8.3-intel-2020b + +This is a list of extensions included in the module: + +gensim-3.8.3, smart_open-4.1.2 + +### gensim/3.8.3-foss-2020b + +This is a list of extensions included in the module: + +gensim-3.8.3, smart_open-4.1.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/geopandas.md b/mkdocs/docs/HPC/only/gent/available_software/detail/geopandas.md index 39f361438f94..c58c63505734 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/geopandas.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/geopandas.md @@ -6,6 +6,10 @@ hide: geopandas ========= + +GeoPandas is a project to add support for geographic data to pandas objects.It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Seriesand pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects andperform geometric operations. + +https://github.com/geopandas/geopandas # Available modules @@ -17,10 +21,29 @@ To start using geopandas, load one of these modules using a `module load` comman module load geopandas/0.12.2-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |geopandas/0.12.2-foss-2022b|x|x|x|x|x|x| |geopandas/0.8.1-intel-2019b-Python-3.7.4|-|-|x|-|x|x| |geopandas/0.8.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### geopandas/0.12.2-foss-2022b + +This is a list of extensions included in the module: + +geopandas-0.12.2, mapclassify-2.4.3 + +### geopandas/0.8.1-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +Deprecated-1.2.10, descartes-1.1.0, geopandas-0.8.1, mapclassify-2.2.0, wrapt-1.12.1 + +### geopandas/0.8.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +Deprecated-1.2.10, descartes-1.1.0, geopandas-0.8.1, mapclassify-2.3.0, wrapt-1.12.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gettext.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gettext.md index 7a6c751ad890..a880e1cfa512 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gettext.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gettext.md @@ -6,6 +6,10 @@ hide: gettext ======= + +GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we maybuild many other steps. This package offers to programmers, translators, and even users, a well integrated set of toolsand documentation + +http://www.gnu.org/software/gettext/ # Available modules @@ -17,7 +21,7 @@ To start using gettext, load one of these modules using a `module load` command module load gettext/0.22-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gexiv2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gexiv2.md index 0d228ff097bf..80c609316ab4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gexiv2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gexiv2.md @@ -6,6 +6,10 @@ hide: gexiv2 ====== + +gexiv2 is a GObject wrapper around the Exiv2 photo metadata library. + +https://wiki.gnome.org/Projects/gexiv2 # Available modules @@ -17,7 +21,7 @@ To start using gexiv2, load one of these modules using a `module load` command l module load gexiv2/0.12.2-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gfbf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gfbf.md index 03e04fa3aac6..68847a3e25b4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gfbf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gfbf.md @@ -6,6 +6,10 @@ hide: gfbf ==== + +GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW. + +(none) # Available modules @@ -17,7 +21,7 @@ To start using gfbf, load one of these modules using a `module load` command lik module load gfbf/2023b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md index 6027a26b39d4..5f110347031a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md @@ -6,6 +6,10 @@ hide: gffread ======= + +GFF/GTF parsing utility providing format conversions,region filtering, FASTA sequence extraction and more. + +https://ccb.jhu.edu/software/stringtie/gff.shtml#gffread # Available modules @@ -17,7 +21,7 @@ To start using gffread, load one of these modules using a `module load` command module load gffread/0.12.7-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gffutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gffutils.md index b9d01f2df4ed..8debea321364 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gffutils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gffutils.md @@ -6,6 +6,10 @@ hide: gffutils ======== + +Gffutils is a Python package for working with and manipulating the GFF and GTF format files typically used for genomic annotations. + +https://github.com/daler/gffutils # Available modules @@ -17,8 +21,15 @@ To start using gffutils, load one of these modules using a `module load` command module load gffutils/0.12-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |gffutils/0.12-foss-2022b|x|x|x|x|x|x| + + +### gffutils/0.12-foss-2022b + +This is a list of extensions included in the module: + +argcomplete-3.1.1, argh-0.28.1, gffutils-0.12, simplejson-3.19.1, six-1.16.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gflags.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gflags.md index 2dad8d774df5..9a85591dafe9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gflags.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gflags.md @@ -6,6 +6,10 @@ hide: gflags ====== + +The gflags package contains a C++ library that implements commandline flagsprocessing. It includes built-in support for standard types such as stringand the ability to define flags in the source file in which they are used. + +https://github.com/gflags/gflags # Available modules @@ -17,7 +21,7 @@ To start using gflags, load one of these modules using a `module load` command l module load gflags/2.2.2-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/giflib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/giflib.md index 2c8cce9d6871..5b3e501499f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/giflib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/giflib.md @@ -6,6 +6,10 @@ hide: giflib ====== + +giflib is a library for reading and writing gif images.It is API and ABI compatible with libungif which was in wide use whilethe LZW compression algorithm was patented. + +http://giflib.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using giflib, load one of these modules using a `module load` command l module load giflib/5.2.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/git-lfs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/git-lfs.md index 049e62a6e7df..f63fdb42317a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/git-lfs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/git-lfs.md @@ -6,6 +6,10 @@ hide: git-lfs ======= + +Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com + +https://git-lfs.github.com # Available modules @@ -17,7 +21,7 @@ To start using git-lfs, load one of these modules using a `module load` command module load git-lfs/3.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/git.md b/mkdocs/docs/HPC/only/gent/available_software/detail/git.md index 75ce558d2c4d..e68bad06c512 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/git.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/git.md @@ -6,6 +6,10 @@ hide: git === + +Git is a free and open source distributed version control system designedto handle everything from small to very large projects with speed and efficiency. + +https://git-scm.com/ # Available modules @@ -17,7 +21,7 @@ To start using git, load one of these modules using a `module load` command like module load git/2.42.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/glew.md b/mkdocs/docs/HPC/only/gent/available_software/detail/glew.md index 54d0d8aed660..2dbe4a3505c4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/glew.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/glew.md @@ -6,6 +6,10 @@ hide: glew ==== + +The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-sourceC/C++ extension loading library. GLEW provides efficient run-time mechanismsfor determining which OpenGL extensions are supported on the target platform. + +http://glew.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using glew, load one of these modules using a `module load` command lik module load glew/2.2.0-GCCcore-12.3.0-osmesa ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/glib-networking.md b/mkdocs/docs/HPC/only/gent/available_software/detail/glib-networking.md index 001a3f5ee574..8f4a09374bf6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/glib-networking.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/glib-networking.md @@ -6,6 +6,10 @@ hide: glib-networking =============== + +Network extensions for GLib + +https://gitlab.gnome.org/GNOME/glib-networking # Available modules @@ -17,7 +21,7 @@ To start using glib-networking, load one of these modules using a `module load` module load glib-networking/2.72.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/glibc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/glibc.md index 160e8854eeec..11013f0c953d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/glibc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/glibc.md @@ -6,6 +6,10 @@ hide: glibc ===== + +The GNU C Library project provides the core libraries for the GNU system and GNU/Linux systems, as well as many other systems that use Linux as the kernel. + +https://www.gnu.org/software/libc/ # Available modules @@ -17,7 +21,7 @@ To start using glibc, load one of these modules using a `module load` command li module load glibc/2.30-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/glog.md b/mkdocs/docs/HPC/only/gent/available_software/detail/glog.md index 3d74faf158c8..c76722f80c03 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/glog.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/glog.md @@ -6,6 +6,10 @@ hide: glog ==== + +A C++ implementation of the Google logging module. + +https://github.com/google/glog # Available modules @@ -17,7 +21,7 @@ To start using glog, load one of these modules using a `module load` command lik module load glog/0.6.0-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gmpy2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gmpy2.md index ff55c693a161..1b751fe42e07 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gmpy2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gmpy2.md @@ -6,6 +6,10 @@ hide: gmpy2 ===== + +GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x + +https://github.com/aleaxit/gmpy # Available modules @@ -17,7 +21,7 @@ To start using gmpy2, load one of these modules using a `module load` command li module load gmpy2/2.1.5-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gmsh.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gmsh.md index 1d4311c354d1..db25ca2c3c76 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gmsh.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gmsh.md @@ -6,6 +6,10 @@ hide: gmsh ==== + +Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor. + +https://gmsh.info # Available modules @@ -17,7 +21,7 @@ To start using gmsh, load one of these modules using a `module load` command lik module load gmsh/4.5.6-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gnuplot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gnuplot.md index 9ebb3c8bc054..3b2397b225db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gnuplot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gnuplot.md @@ -6,6 +6,10 @@ hide: gnuplot ======= + +Portable interactive, function plotting utility + +http://gnuplot.sourceforge.net/ # Available modules @@ -17,7 +21,7 @@ To start using gnuplot, load one of these modules using a `module load` command module load gnuplot/5.4.8-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/goalign.md b/mkdocs/docs/HPC/only/gent/available_software/detail/goalign.md index 34d1aa804532..1d3da841f7d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/goalign.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/goalign.md @@ -6,6 +6,10 @@ hide: goalign ======= + +Goalign is a set of command line tools to manipulate multiple alignments. + +https://github.com/evolbioinfo/goalign # Available modules @@ -17,7 +21,7 @@ To start using goalign, load one of these modules using a `module load` command module load goalign/0.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gobff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gobff.md index e14520e3dd58..c0faf95ae5bd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gobff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gobff.md @@ -6,6 +6,10 @@ hide: gobff ===== + +GCC and GFortran based compiler toolchain with OpenMPI, BLIS, libFLAME, ScaLAPACK and FFTW. + +(none) # Available modules @@ -17,7 +21,7 @@ To start using gobff, load one of these modules using a `module load` command li module load gobff/2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gomkl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gomkl.md index 88d9cce5eb03..669b2f66cdd5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gomkl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gomkl.md @@ -6,6 +6,10 @@ hide: gomkl ===== + +GNU Compiler Collection (GCC) based compiler toolchain with OpenMPI and MKL + +(none) # Available modules @@ -17,7 +21,7 @@ To start using gomkl, load one of these modules using a `module load` command li module load gomkl/2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gompi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gompi.md index 1a41b8e96e27..9bebe1fae048 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gompi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gompi.md @@ -6,6 +6,10 @@ hide: gompi ===== + +GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support. + +(none) # Available modules @@ -17,7 +21,7 @@ To start using gompi, load one of these modules using a `module load` command li module load gompi/2023b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gompic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gompic.md index bb663a5cc016..0d380e812104 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gompic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gompic.md @@ -6,6 +6,10 @@ hide: gompic ====== + +GNU Compiler Collection (GCC) based compiler toolchain along with CUDA toolkit, including OpenMPI for MPI support with CUDA features enabled. + +(none) # Available modules @@ -17,7 +21,7 @@ To start using gompic, load one of these modules using a `module load` command l module load gompic/2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/googletest.md b/mkdocs/docs/HPC/only/gent/available_software/detail/googletest.md index 32b31607e3b3..4ddbfe439b6d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/googletest.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/googletest.md @@ -6,6 +6,10 @@ hide: googletest ========== + +Google's framework for writing C++ tests on a variety of platforms + +https://github.com/google/googletest # Available modules @@ -17,7 +21,7 @@ To start using googletest, load one of these modules using a `module load` comma module load googletest/1.13.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gotree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gotree.md index 5272f36ea915..ce07159f2910 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gotree.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gotree.md @@ -6,6 +6,10 @@ hide: gotree ====== + +GoTree is a set of command line tools to manipulate phylogenetic trees. + +https://github.com/evolbioinfo/gotree # Available modules @@ -17,7 +21,7 @@ To start using gotree, load one of these modules using a `module load` command l module load gotree/0.4.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gperf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gperf.md index 4e5689dd1e4e..a32769c252d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gperf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gperf.md @@ -6,6 +6,10 @@ hide: gperf ===== + +GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. + +http://www.gnu.org/software/gperf/ # Available modules @@ -17,7 +21,7 @@ To start using gperf, load one of these modules using a `module load` command li module load gperf/3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gperftools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gperftools.md index c022851503fb..41f3885a68f6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gperftools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gperftools.md @@ -6,6 +6,10 @@ hide: gperftools ========== + +gperftools are for use by developers so that they can create more robust applications. Especially of use to those developing multi-threaded applications in C++ with templates. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler. + +https://github.com/gperftools/gperftools # Available modules @@ -17,7 +21,7 @@ To start using gperftools, load one of these modules using a `module load` comma module load gperftools/2.14-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gpustat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gpustat.md index 58dcbb68e5fe..40e4e1c08648 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gpustat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gpustat.md @@ -6,6 +6,10 @@ hide: gpustat ======= + +dstat-like utilization monitor for NVIDIA GPUs + +https://github.com/wookayin/gpustat # Available modules @@ -17,8 +21,15 @@ To start using gpustat, load one of these modules using a `module load` command module load gpustat/0.6.0-gcccuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |gpustat/0.6.0-gcccuda-2020b|-|-|-|-|x|-| + + +### gpustat/0.6.0-gcccuda-2020b + +This is a list of extensions included in the module: + +blessings-1.7, gpustat-0.6.0, nvidia-ml-py3-7.352.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/graphite2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/graphite2.md index a7b64d42a9d2..b95aa072dfef 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/graphite2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/graphite2.md @@ -6,6 +6,10 @@ hide: graphite2 ========= + +Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world. + +https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home # Available modules @@ -17,7 +21,7 @@ To start using graphite2, load one of these modules using a `module load` comman module load graphite2/1.3.14-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/graphviz-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/graphviz-python.md index dfd032bca214..c9473f55d6f8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/graphviz-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/graphviz-python.md @@ -6,6 +6,10 @@ hide: graphviz-python =============== + +Simple Python interface for Graphviz + +https://pypi.python.org/pypi/graphviz # Available modules @@ -17,7 +21,7 @@ To start using graphviz-python, load one of these modules using a `module load` module load graphviz-python/0.20.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/grid.md b/mkdocs/docs/HPC/only/gent/available_software/detail/grid.md index 7bb04dd7d837..a374ddadc94e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/grid.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/grid.md @@ -6,6 +6,10 @@ hide: grid ==== + +Grid is a free and open-source Python library for numerical integration, interpolation and differentiation of interest for the quantum chemistry community. + +https://grid.qcdevs.org/ # Available modules @@ -17,7 +21,7 @@ To start using grid, load one of these modules using a `module load` command lik module load grid/20220610-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/groff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/groff.md index 4cec9dba4faa..daefb7769d02 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/groff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/groff.md @@ -6,6 +6,10 @@ hide: groff ===== + +Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output. + +https://www.gnu.org/software/groff # Available modules @@ -17,7 +21,7 @@ To start using groff, load one of these modules using a `module load` command li module load groff/1.22.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gzip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gzip.md index 776c8943d19f..bd90399d4da7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gzip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gzip.md @@ -6,6 +6,10 @@ hide: gzip ==== + +gzip (GNU zip) is a popular data compression program as a replacement for compress + +https://www.gnu.org/software/gzip/ # Available modules @@ -17,7 +21,7 @@ To start using gzip, load one of these modules using a `module load` command lik module load gzip/1.13-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/h5netcdf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/h5netcdf.md index 885e99be48a4..012f2069ee86 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/h5netcdf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/h5netcdf.md @@ -6,6 +6,10 @@ hide: h5netcdf ======== + +A Python interface for the netCDF4 file-format that reads and writes local orremote HDF5 files directly via h5py or h5pyd, without relying on the UnidatanetCDF library. + +https://h5netcdf.org/ # Available modules @@ -17,8 +21,15 @@ To start using h5netcdf, load one of these modules using a `module load` command module load h5netcdf/1.2.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |h5netcdf/1.2.0-foss-2023a|x|x|x|x|x|x| + + +### h5netcdf/1.2.0-foss-2023a + +This is a list of extensions included in the module: + +h5netcdf-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/h5py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/h5py.md index 3eb9f1c8a4f7..73052820645f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/h5py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/h5py.md @@ -6,6 +6,10 @@ hide: h5py ==== + +HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data. + +https://www.h5py.org/ # Available modules @@ -17,7 +21,7 @@ To start using h5py, load one of these modules using a `module load` command lik module load h5py/3.9.0-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/harmony.md b/mkdocs/docs/HPC/only/gent/available_software/detail/harmony.md index 583c4fd94e9e..6235ce22a8ee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/harmony.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/harmony.md @@ -6,6 +6,10 @@ hide: harmony ======= + +Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. + +https://portals.broadinstitute.org/harmony # Available modules @@ -17,7 +21,7 @@ To start using harmony, load one of these modules using a `module load` command module load harmony/1.0.0-20200224-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hatchling.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hatchling.md index fc9c45233412..ae256836460d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hatchling.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hatchling.md @@ -6,6 +6,10 @@ hide: hatchling ========= + +Extensible, standards compliant build backend used by Hatch,a modern, extensible Python project manager. + +https://hatch.pypa.io # Available modules @@ -17,9 +21,22 @@ To start using hatchling, load one of these modules using a `module load` comman module load hatchling/1.18.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |hatchling/1.18.0-GCCcore-13.2.0|x|x|x|x|x|x| |hatchling/1.18.0-GCCcore-12.3.0|x|x|x|x|x|x| + + +### hatchling/1.18.0-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +editables-0.5, hatch_fancy_pypi_readme-23.1.0, hatch_vcs-0.3.0, hatchling-1.18.0, packaging-23.2, pathspec-0.11.2, pluggy-1.3.0, setuptools-scm-8.0.4, tomli-2.0.1, trove_classifiers-2023.10.18, typing_extensions-4.8.0 + +### hatchling/1.18.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +editables-0.3, hatch_fancy_pypi_readme-23.1.0, hatch_vcs-0.3.0, hatchling-1.18.0, packaging-23.1, pathspec-0.11.1, pluggy-1.2.0, setuptools_scm-7.1.0, tomli-2.0.1, trove_classifiers-2023.5.24, typing_extensions-4.6.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/help2man.md b/mkdocs/docs/HPC/only/gent/available_software/detail/help2man.md index 4722396fef61..90035ff7e5a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/help2man.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/help2man.md @@ -6,6 +6,10 @@ hide: help2man ======== + +help2man produces simple manual pages from the '--help' and '--version' output of other commands. + +https://www.gnu.org/software/help2man/ # Available modules @@ -17,7 +21,7 @@ To start using help2man, load one of these modules using a `module load` command module load help2man/1.49.3-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hierfstat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hierfstat.md index 6fceda1c19aa..8b79f6639d9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hierfstat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hierfstat.md @@ -6,6 +6,10 @@ hide: hierfstat ========= + +Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels inthe hierarchy. + +https://cran.r-project.org/package=hierfstat # Available modules @@ -17,8 +21,15 @@ To start using hierfstat, load one of these modules using a `module load` comman module load hierfstat/0.5-7-foss-2020a-R-4.0.0-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |hierfstat/0.5-7-foss-2020a-R-4.0.0-Python-3.8.2|-|x|x|-|x|x| + + +### hierfstat/0.5-7-foss-2020a-R-4.0.0-Python-3.8.2 + +This is a list of extensions included in the module: + +adegenet-2.1.3, gaston-1.5.6, hierfstat-0.5-7, RcppParallel-5.0.2, spdep-1.1-5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hifiasm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hifiasm.md index 8209c476ab37..7e90a7991dbc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hifiasm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hifiasm.md @@ -6,6 +6,10 @@ hide: hifiasm ======= + +Hifiasm: a haplotype-resolved assembler for accurate Hifi reads. + +https://github.com/chhylp123/hifiasm # Available modules @@ -17,7 +21,7 @@ To start using hifiasm, load one of these modules using a `module load` command module load hifiasm/0.19.7-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hiredis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hiredis.md index b1423f40d576..df258a48b355 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hiredis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hiredis.md @@ -6,6 +6,10 @@ hide: hiredis ======= + +Hiredis is a minimalistic C client library for the Redis database.It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command. + +https://github.com/redis/hiredis # Available modules @@ -17,7 +21,7 @@ To start using hiredis, load one of these modules using a `module load` command module load hiredis/1.0.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/histolab.md b/mkdocs/docs/HPC/only/gent/available_software/detail/histolab.md index 370f529f290d..7e510977f71e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/histolab.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/histolab.md @@ -6,6 +6,10 @@ hide: histolab ======== + +Library for Digital Pathology Image Processing + +https://github.com/histolab/histolab # Available modules @@ -17,7 +21,7 @@ To start using histolab, load one of these modules using a `module load` command module load histolab/0.4.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hmmlearn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hmmlearn.md index 954ae963b925..e88d1954f4dd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hmmlearn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hmmlearn.md @@ -6,6 +6,10 @@ hide: hmmlearn ======== + +hmmlearn is a set of algorithms for unsupervised learning and inference of Hidden Markov Models + +https://github.com/hmmlearn/hmmlearn # Available modules @@ -17,7 +21,7 @@ To start using hmmlearn, load one of these modules using a `module load` command module load hmmlearn/0.3.0-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/horton.md b/mkdocs/docs/HPC/only/gent/available_software/detail/horton.md index d97e934b74d7..725ffbc414bb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/horton.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/horton.md @@ -6,6 +6,10 @@ hide: horton ====== + +HORTON is a Helpful Open-source Research TOol for N-fermion systems, written primarily in the Python programming language. (HORTON is named after the helpful pachyderm, not the Canadian caffeine supply store.) The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost. Although HORTON is primarily designed to be a quantum-chemistry program, it can perform computations involving model Hamiltonians, and could be extended for computations in nuclear physics. + +https://theochem.github.io/horton # Available modules @@ -17,7 +21,7 @@ To start using horton, load one of these modules using a `module load` command l module load horton/2.1.1-intel-2020a-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/how_are_we_stranded_here.md b/mkdocs/docs/HPC/only/gent/available_software/detail/how_are_we_stranded_here.md index 3897b4a0c4b2..59a831a54208 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/how_are_we_stranded_here.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/how_are_we_stranded_here.md @@ -6,6 +6,10 @@ hide: how_are_we_stranded_here ======================== + +Python package for testing strandedness of RNA-Seq fastq files + +https://github.com/signalbash/how_are_we_stranded_here # Available modules @@ -17,7 +21,7 @@ To start using how_are_we_stranded_here, load one of these modules using a `modu module load how_are_we_stranded_here/1.0.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/humann.md b/mkdocs/docs/HPC/only/gent/available_software/detail/humann.md index 13a85aa9e10c..80f45f411bfb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/humann.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/humann.md @@ -6,6 +6,10 @@ hide: humann ====== + +HUMAnN v3 is a pipeline for efficiently and accurately determining the coverage and abundance of microbial pathways in a community from metagenomic data.Sequencing a metagenome typically produces millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question: What are the microbes in my community-of-interest doing (or capable of doing)? + +http://huttenhower.sph.harvard.edu/humann # Available modules @@ -17,8 +21,15 @@ To start using humann, load one of these modules using a `module load` command l module load humann/3.6-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |humann/3.6-foss-2022a|x|x|x|x|x|x| + + +### humann/3.6-foss-2022a + +This is a list of extensions included in the module: + +humann-3.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hunspell.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hunspell.md index 620811695e1f..74122c89a334 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hunspell.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hunspell.md @@ -6,6 +6,10 @@ hide: hunspell ======== + +Hunspell is a spell checker and morphological analyzer library and program designed for languageswith rich morphology and complex word compounding or character encoding. + +http://hunspell.github.io/ # Available modules @@ -17,7 +21,7 @@ To start using hunspell, load one of these modules using a `module load` command module load hunspell/1.7.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hwloc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hwloc.md index 81756bb0534b..9ed30ca3cf84 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hwloc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hwloc.md @@ -6,6 +6,10 @@ hide: hwloc ===== + +The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. + +https://www.open-mpi.org/projects/hwloc/ # Available modules @@ -17,7 +21,7 @@ To start using hwloc, load one of these modules using a `module load` command li module load hwloc/2.9.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hyperopt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hyperopt.md index ae832f4354dd..959546f9170a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hyperopt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hyperopt.md @@ -6,6 +6,10 @@ hide: hyperopt ======== + +Distributed Asynchronous Hyperparameter Optimization in Python + +https://github.com/hyperopt/hyperopt # Available modules @@ -17,9 +21,22 @@ To start using hyperopt, load one of these modules using a `module load` command module load hyperopt/0.2.5-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |hyperopt/0.2.5-fosscuda-2020b|-|-|-|-|x|-| |hyperopt/0.2.4-intel-2019b-Python-3.7.4-Java-1.8|-|x|x|-|x|-| + + +### hyperopt/0.2.5-fosscuda-2020b + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, hyperopt-0.2.5, lightgbm-3.2.0, py4j-0.10.9.2, pymongo-3.11.3 + +### hyperopt/0.2.4-intel-2019b-Python-3.7.4-Java-1.8 + +This is a list of extensions included in the module: + +cloudpickle-1.4.1, hyperopt-0.2.4, lightgbm-2.3.1, pymongo-3.10.1, tqdm-4.46.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hypothesis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hypothesis.md index cdf615784bf2..7a9ff6939078 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hypothesis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hypothesis.md @@ -6,6 +6,10 @@ hide: hypothesis ========== + +Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work. + +https://github.com/HypothesisWorks/hypothesis # Available modules @@ -17,7 +21,7 @@ To start using hypothesis, load one of these modules using a `module load` comma module load hypothesis/6.90.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -31,3 +35,10 @@ module load hypothesis/6.90.0-GCCcore-13.2.0 |hypothesis/5.41.2-GCCcore-10.2.0|x|x|x|x|x|x| |hypothesis/4.57.1-GCCcore-11.2.0-Python-2.7.18|x|x|x|x|x|x| |hypothesis/4.44.2-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| + + +### hypothesis/4.44.2-GCCcore-8.3.0-Python-3.7.4 + +This is a list of extensions included in the module: + +attrs-19.3.0, hypothesis-4.44.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iccifort.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iccifort.md index 825e4a49fb48..7d2aba60817d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iccifort.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iccifort.md @@ -6,6 +6,10 @@ hide: iccifort ======== + +Intel C, C++ & Fortran compilers + +https://software.intel.com/en-us/intel-compilers/ # Available modules @@ -17,7 +21,7 @@ To start using iccifort, load one of these modules using a `module load` command module load iccifort/2020.4.304 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iccifortcuda.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iccifortcuda.md index d6fe421ae8ba..e7562baeaebc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iccifortcuda.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iccifortcuda.md @@ -6,6 +6,10 @@ hide: iccifortcuda ============ + +Intel C, C++ & Fortran compilers with CUDA toolkit + +(none) # Available modules @@ -17,7 +21,7 @@ To start using iccifortcuda, load one of these modules using a `module load` com module load iccifortcuda/2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ichorCNA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ichorCNA.md index 023657e30768..9efdb9b47fe6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ichorCNA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ichorCNA.md @@ -6,6 +6,10 @@ hide: ichorCNA ======== + +ichorCNA is a tool for estimating the fraction of tumor in cell-free DNA from ultra-low-pass wholegenome sequencing + +https://github.com/broadinstitute/ichorCNA/wiki # Available modules @@ -17,7 +21,7 @@ To start using ichorCNA, load one of these modules using a `module load` command module load ichorCNA/0.3.2-20191219-foss-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/idemux.md b/mkdocs/docs/HPC/only/gent/available_software/detail/idemux.md index a11c7d78fa4d..b29c2a62c47d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/idemux.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/idemux.md @@ -6,6 +6,10 @@ hide: idemux ====== + +idemux - inline barcode demultiplexingIdemux is a command line tool designed to demultiplex paired-end FASTQ files from QuantSeq-Pool. + +https://github.com/Lexogen-Tools/idemux # Available modules @@ -17,8 +21,15 @@ To start using idemux, load one of these modules using a `module load` command l module load idemux/0.1.6-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |idemux/0.1.6-GCCcore-10.2.0|-|x|x|-|x|x| + + +### idemux/0.1.6-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +idemux-0.1.6, pytest-runner-5.3.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/igraph.md b/mkdocs/docs/HPC/only/gent/available_software/detail/igraph.md index 9e9761d2ab15..6cbfe2b9ddb2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/igraph.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/igraph.md @@ -6,6 +6,10 @@ hide: igraph ====== + +igraph is a collection of network analysis tools with the emphasis on efficiency, portability and ease of use. igraph is open source and free. igraph can be programmed in R, Python and C/C++. + +https://igraph.org # Available modules @@ -17,7 +21,7 @@ To start using igraph, load one of these modules using a `module load` command l module load igraph/0.10.10-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/igvShiny.md b/mkdocs/docs/HPC/only/gent/available_software/detail/igvShiny.md index d17efa9f0848..6395eabb1782 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/igvShiny.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/igvShiny.md @@ -6,6 +6,10 @@ hide: igvShiny ======== + +An htmlwidget version of igv, for RStudio and Shiny apps + +https://github.com/gladkia/igvShiny # Available modules @@ -17,7 +21,7 @@ To start using igvShiny, load one of these modules using a `module load` command module load igvShiny/20240112-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iibff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iibff.md index b81047466a66..07782c2edf04 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iibff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iibff.md @@ -6,6 +6,10 @@ hide: iibff ===== + +GCC and GFortran based compiler toolchain with OpenMPI, BLIS, libFLAME, ScaLAPACK and FFTW. + +(none) # Available modules @@ -17,7 +21,7 @@ To start using iibff, load one of these modules using a `module load` command li module load iibff/2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iimpi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iimpi.md index 4a00e518ab62..8c4cc70113b4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iimpi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iimpi.md @@ -6,6 +6,10 @@ hide: iimpi ===== + +Intel C/C++ and Fortran compilers, alongside Intel MPI. + +https://software.intel.com/parallel-studio-xe # Available modules @@ -17,7 +21,7 @@ To start using iimpi, load one of these modules using a `module load` command li module load iimpi/2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iimpic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iimpic.md index c67ca27a40e2..80b6b676a0f9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iimpic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iimpic.md @@ -6,6 +6,10 @@ hide: iimpic ====== + +Intel C/C++ and Fortran compilers, alongside Intel MPI and CUDA. + +(none) # Available modules @@ -17,7 +21,7 @@ To start using iimpic, load one of these modules using a `module load` command l module load iimpic/2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imagecodecs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imagecodecs.md index ed48fa37b199..21291bb316f3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imagecodecs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imagecodecs.md @@ -6,6 +6,10 @@ hide: imagecodecs =========== + +Imagecodecs is a Python library that provides block-oriented, in-memory buffer transformation,compression, and decompression functions for use in the tifffile, czifile, zarr, and otherscientific image input/output modules. + +https://github.com/cgohlke/imagecodecs # Available modules @@ -17,8 +21,15 @@ To start using imagecodecs, load one of these modules using a `module load` comm module load imagecodecs/2022.9.26-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |imagecodecs/2022.9.26-foss-2022a|x|x|x|x|x|x| + + +### imagecodecs/2022.9.26-foss-2022a + +This is a list of extensions included in the module: + +bitshuffle-0.5.1, imagecodecs-2022.9.26 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imageio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imageio.md index 67d7f1ebbc66..8bda5909b1c9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imageio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imageio.md @@ -6,6 +6,10 @@ hide: imageio ======= + +Imageio is a Python library that provides an easy interface to read and write a wide range of image data, including animated images, video, volumetric data, and scientific formats. + +https://imageio.github.io # Available modules @@ -17,7 +21,7 @@ To start using imageio, load one of these modules using a `module load` command module load imageio/2.22.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imbalanced-learn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imbalanced-learn.md index 69dfadbc424d..6719101bff22 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imbalanced-learn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imbalanced-learn.md @@ -6,6 +6,10 @@ hide: imbalanced-learn ================ + +imbalanced-learn is a Python package offering a number of re-sampling techniques commonly used in datasets showing strong between-class imbalance. + +https://github.com/scikit-learn-contrib/imbalanced-learn # Available modules @@ -17,8 +21,15 @@ To start using imbalanced-learn, load one of these modules using a `module load` module load imbalanced-learn/0.10.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |imbalanced-learn/0.10.1-foss-2022a|x|x|x|x|x|x| + + +### imbalanced-learn/0.10.1-foss-2022a + +This is a list of extensions included in the module: + +imbalanced-learn-0.10.1, joblib-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imgaug.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imgaug.md index a473267399f0..605a27fee5a4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imgaug.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imgaug.md @@ -6,6 +6,10 @@ hide: imgaug ====== + +This python library helps you with augmenting images for your machine learning projects. It converts a set of input images into a new, much larger set of slightly altered images. + +https://imgaug.readthedocs.io/en/latest/ # Available modules @@ -17,7 +21,7 @@ To start using imgaug, load one of these modules using a `module load` command l module load imgaug/0.4.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imkl-FFTW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imkl-FFTW.md index 4fb15e2771e5..92c87698162f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imkl-FFTW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imkl-FFTW.md @@ -6,6 +6,10 @@ hide: imkl-FFTW ========= + +FFTW interfaces using Intel oneAPI Math Kernel Library + +https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html # Available modules @@ -17,7 +21,7 @@ To start using imkl-FFTW, load one of these modules using a `module load` comman module load imkl-FFTW/2023.1.0-iimpi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imkl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imkl.md index c7bc636a2fcc..b60b066555af 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imkl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imkl.md @@ -6,6 +6,10 @@ hide: imkl ==== + +Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more. + +https://software.intel.com/mkl # Available modules @@ -17,7 +21,7 @@ To start using imkl, load one of these modules using a `module load` command lik module load imkl/2023.1.0-gompi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/impi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/impi.md index b58914a59269..63edf80d20b5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/impi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/impi.md @@ -6,6 +6,10 @@ hide: impi ==== + +Intel MPI Library, compatible with MPICH ABI + +https://software.intel.com/en-us/intel-mpi-library/ # Available modules @@ -17,7 +21,7 @@ To start using impi, load one of these modules using a `module load` command lik module load impi/2021.9.0-intel-compilers-2023.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imutils.md index ccd595ef9b76..bbc54a1ab3f8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imutils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imutils.md @@ -6,6 +6,10 @@ hide: imutils ======= + +A series of convenience functions to make basic image processing operations such as translation,rotation, resizing, skeletonization, and displaying Matplotlib images easier with OpenCV and Python. + +https://github.com/jrosebr1/imutils # Available modules @@ -17,7 +21,7 @@ To start using imutils, load one of these modules using a `module load` command module load imutils/0.5.4-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/inferCNV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/inferCNV.md index a639efd4658a..e5745254b5e1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/inferCNV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/inferCNV.md @@ -6,6 +6,10 @@ hide: inferCNV ======== + +InferCNV is used to explore tumor single cell RNA-Seq data to identify evidence for somatic large-scale chromosomal copy number alterations, such as gains or deletions of entire chromosomes or large segments of chromosomes. + +https://github.com/broadinstitute/inferCNV/wiki # Available modules @@ -17,10 +21,23 @@ To start using inferCNV, load one of these modules using a `module load` command module load inferCNV/1.12.0-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |inferCNV/1.12.0-foss-2022a-R-4.2.1|x|x|x|x|x|x| |inferCNV/1.12.0-foss-2021b-R-4.2.0|x|x|x|-|x|x| |inferCNV/1.3.3-foss-2020b|x|x|x|x|x|x| + + +### inferCNV/1.12.0-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +infercnv-1.12.0, phyclust-0.1-33 + +### inferCNV/1.12.0-foss-2021b-R-4.2.0 + +This is a list of extensions included in the module: + +infercnv-1.12.0, parallelDist-0.2.6, phyclust-0.1-30 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/infercnvpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/infercnvpy.md index eae060596e8c..06efdd93289f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/infercnvpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/infercnvpy.md @@ -6,6 +6,10 @@ hide: infercnvpy ========== + +Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy. + +https://github.com/icbi-lab/infercnvpy # Available modules @@ -17,9 +21,22 @@ To start using infercnvpy, load one of these modules using a `module load` comma module load infercnvpy/0.4.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |infercnvpy/0.4.2-foss-2022a|x|x|x|x|x|x| |infercnvpy/0.4.0-foss-2021b|x|x|x|-|x|x| + + +### infercnvpy/0.4.2-foss-2022a + +This is a list of extensions included in the module: + +gtfparse-2.0.1, infercnvpy-0.4.2, pyreadr-0.4.7, session-info-1.0.0, setuptools-67.6.1 + +### infercnvpy/0.4.0-foss-2021b + +This is a list of extensions included in the module: + +gtfparse-1.2.1, infercnvpy-0.4.0, pyreadr-0.4.7, session_info-1.0.0, setuptools-65.6.0, tqdm-4.64.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/inflection.md b/mkdocs/docs/HPC/only/gent/available_software/detail/inflection.md index 5cb59f078845..c4012338fa9e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/inflection.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/inflection.md @@ -6,6 +6,10 @@ hide: inflection ========== + +inflection is a package that finds the inflection point of a planar curve which is given as a data frame of discrete (xi,yi) points + +https://github.com/dchristop/inflection # Available modules @@ -17,7 +21,7 @@ To start using inflection, load one of these modules using a `module load` comma module load inflection/1.3.5-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intel-compilers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intel-compilers.md index f017f8db819e..47ebf594e144 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intel-compilers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intel-compilers.md @@ -6,6 +6,10 @@ hide: intel-compilers =============== + +Intel C, C++ & Fortran compilers (classic and oneAPI) + +https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html # Available modules @@ -17,7 +21,7 @@ To start using intel-compilers, load one of these modules using a `module load` module load intel-compilers/2023.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intel.md index 3d05388fe6bf..93a8afb443ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intel.md @@ -6,6 +6,10 @@ hide: intel ===== + +Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL). + +https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain # Available modules @@ -17,7 +21,7 @@ To start using intel, load one of these modules using a `module load` command li module load intel/2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intelcuda.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intelcuda.md index b65b62ceaa4f..85148a70198c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intelcuda.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intelcuda.md @@ -6,6 +6,10 @@ hide: intelcuda ========= + +Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL, with CUDA toolkit + +(none) # Available modules @@ -17,7 +21,7 @@ To start using intelcuda, load one of these modules using a `module load` comman module load intelcuda/2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree-python.md index 442409b9d92a..8c084ceb0064 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree-python.md @@ -6,6 +6,10 @@ hide: intervaltree-python =================== + +A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment. + +https://github.com/chaimleib/intervaltree # Available modules @@ -17,7 +21,7 @@ To start using intervaltree-python, load one of these modules using a `module lo module load intervaltree-python/3.1.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree.md index 6dd245d5effe..24e4f71f400f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree.md @@ -6,6 +6,10 @@ hide: intervaltree ============ + +An interval tree can be used to efficiently find a set of numeric intervals overlapping or containing another interval. This library provides a basic implementation of an interval tree using C++ templates, allowing the insertion of arbitrary types into the tree. + +https://github.com/ekg/intervaltree # Available modules @@ -17,7 +21,7 @@ To start using intervaltree, load one of these modules using a `module load` com module load intervaltree/0.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intltool.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intltool.md index 65d99e05160e..ba473e022295 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intltool.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intltool.md @@ -6,6 +6,10 @@ hide: intltool ======== + +intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files. + +http://freedesktop.org/wiki/Software/intltool/ # Available modules @@ -17,7 +21,7 @@ To start using intltool, load one of these modules using a `module load` command module load intltool/0.51.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iodata.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iodata.md index ed8b16e6c3f0..42b99ec03179 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iodata.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iodata.md @@ -6,6 +6,10 @@ hide: iodata ====== + +Python library for reading, writing, and converting computational chemistry file formats and generating input files. + +https://github.com/theochem/iodata # Available modules @@ -17,7 +21,7 @@ To start using iodata, load one of these modules using a `module load` command l module load iodata/1.0.0a2-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iomkl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iomkl.md index a4284638adbe..374bda424f60 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iomkl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iomkl.md @@ -6,6 +6,10 @@ hide: iomkl ===== + +Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI. + +https://software.intel.com/en-us/intel-cluster-toolkit-compiler/ # Available modules @@ -17,7 +21,7 @@ To start using iomkl, load one of these modules using a `module load` command li module load iomkl/2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iompi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iompi.md index fcba2880645c..33e255c07a27 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iompi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iompi.md @@ -6,6 +6,10 @@ hide: iompi ===== + +Intel C/C++ and Fortran compilers, alongside Open MPI. + +https://software.intel.com/en-us/intel-cluster-toolkit-compiler/ # Available modules @@ -17,7 +21,7 @@ To start using iompi, load one of these modules using a `module load` command li module load iompi/2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/isoCirc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/isoCirc.md index 4edd27a96443..9bec0c50c5b2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/isoCirc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/isoCirc.md @@ -6,6 +6,10 @@ hide: isoCirc ======= + +isoCirc: computational pipeline to identify high-confidenceBSJs and full-length circRNA isoforms from isoCirc long-read data + +https://github.com/Xinglab/isoCirc # Available modules @@ -17,8 +21,15 @@ To start using isoCirc, load one of these modules using a `module load` command module load isoCirc/1.0.4-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |isoCirc/1.0.4-foss-2020b|-|x|x|x|x|x| + + +### isoCirc/1.0.4-foss-2020b + +This is a list of extensions included in the module: + +argcomplete-1.12.3, argh-0.26.2, crlibm-1.0.3, gffutils-0.10.1, isoCirc-1.0.4, mappy-2.20, pyinterval-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jax.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jax.md index d97de4d3f6e3..b5adb8431052 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jax.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jax.md @@ -6,6 +6,10 @@ hide: jax === + +Composable transformations of Python+NumPy programs:differentiate, vectorize, JIT to GPU/TPU, and more + +https://pypi.python.org/pypi/jax # Available modules @@ -17,7 +21,7 @@ To start using jax, load one of these modules using a `module load` command like module load jax/0.3.25-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -30,3 +34,58 @@ module load jax/0.3.25-foss-2022a-CUDA-11.7.0 |jax/0.2.24-foss-2021a|-|x|x|-|x|x| |jax/0.2.19-fosscuda-2020b|x|-|-|-|x|-| |jax/0.2.19-foss-2020b|x|x|x|x|x|x| + + +### jax/0.3.25-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +etils-0.8.0, jax-0.3.25, opt_einsum-3.3.0 + +### jax/0.3.25-foss-2022a + +This is a list of extensions included in the module: + +etils-0.8.0, jax-0.3.25, opt_einsum-3.3.0 + +### jax/0.3.23-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +etils-0.8.0, jax-0.3.23, opt_einsum-3.3.0 + +### jax/0.3.9-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +jax-0.3.9, opt_einsum-3.3.0 + +### jax/0.3.9-foss-2021a + +This is a list of extensions included in the module: + +jax-0.3.9, opt_einsum-3.3.0 + +### jax/0.2.24-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +jax-0.2.24, opt_einsum-3.3.0 + +### jax/0.2.24-foss-2021a + +This is a list of extensions included in the module: + +jax-0.2.24, opt_einsum-3.3.0 + +### jax/0.2.19-fosscuda-2020b + +This is a list of extensions included in the module: + +jax-0.2.19, opt_einsum-3.3.0 + +### jax/0.2.19-foss-2020b + +This is a list of extensions included in the module: + +jax-0.2.19, opt_einsum-3.3.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jbigkit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jbigkit.md index 160d7cac8eef..00d82022113f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jbigkit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jbigkit.md @@ -6,6 +6,10 @@ hide: jbigkit ======= + +JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents. + +https://www.cl.cam.ac.uk/~mgk25/jbigkit/ # Available modules @@ -17,7 +21,7 @@ To start using jbigkit, load one of these modules using a `module load` command module load jbigkit/2.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jemalloc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jemalloc.md index 243e39708b45..1428db3d1bd5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jemalloc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jemalloc.md @@ -6,6 +6,10 @@ hide: jemalloc ======== + +jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support. + +http://jemalloc.net # Available modules @@ -17,7 +21,7 @@ To start using jemalloc, load one of these modules using a `module load` command module load jemalloc/5.3.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jobcli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jobcli.md index cb5edc0cca17..433e50c6021c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jobcli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jobcli.md @@ -6,6 +6,10 @@ hide: jobcli ====== + +Resource manager agnostic tool for submitting & managing jobs on HPC clusters + +https://github.com/hpcugent/jobcli # Available modules @@ -17,7 +21,7 @@ To start using jobcli, load one of these modules using a `module load` command l module load jobcli/0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/joypy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/joypy.md index f96f25ee6b4d..e1d1bb28d354 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/joypy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/joypy.md @@ -6,6 +6,10 @@ hide: joypy ===== + +Joyplots in Python with matplotlib & pandas + +https://github.com/sbebo/joypy # Available modules @@ -17,7 +21,7 @@ To start using joypy, load one of these modules using a `module load` command li module load joypy/0.2.4-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/json-c.md b/mkdocs/docs/HPC/only/gent/available_software/detail/json-c.md index 5bb1690491ae..583429beb48d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/json-c.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/json-c.md @@ -6,6 +6,10 @@ hide: json-c ====== + +JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSONobjects. + +https://github.com/json-c/json-c # Available modules @@ -17,7 +21,7 @@ To start using json-c, load one of these modules using a `module load` command l module load json-c/0.16-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-contrib-nbextensions.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-contrib-nbextensions.md index ee93cfb185be..7cb187548286 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-contrib-nbextensions.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-contrib-nbextensions.md @@ -6,6 +6,10 @@ hide: jupyter-contrib-nbextensions ============================ + +A collection of various notebook extensions for Jupyter + +https://github.com/ipython-contrib/jupyter_contrib_nbextensions # Available modules @@ -17,8 +21,15 @@ To start using jupyter-contrib-nbextensions, load one of these modules using a ` module load jupyter-contrib-nbextensions/0.7.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |jupyter-contrib-nbextensions/0.7.0-GCCcore-11.3.0|x|x|x|x|x|x| + + +### jupyter-contrib-nbextensions/0.7.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +jupyter_contrib_core-0.4.2, jupyter_contrib_nbextensions-0.7.0, jupyter_highlight_selected_word-0.2.0, jupyter_nbextensions_configurator-0.6.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server-proxy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server-proxy.md index 30e0fded80c2..a3fba35e14b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server-proxy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server-proxy.md @@ -6,6 +6,10 @@ hide: jupyter-server-proxy ==================== + +Jupyter Server Proxy lets you run arbitrary external processes(such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc)alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the pythonpackage that provides the main functionality, the JupyterLab extension(@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher windowto get to RStudio for example. + +https://github.com/jupyterhub/jupyter-server-proxy # Available modules @@ -17,8 +21,15 @@ To start using jupyter-server-proxy, load one of these modules using a `module l module load jupyter-server-proxy/3.2.2-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |jupyter-server-proxy/3.2.2-GCCcore-12.2.0|x|x|x|x|x|x| + + +### jupyter-server-proxy/3.2.2-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +jupyter-server-proxy-3.2.2, simpervisor-0.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server.md index a78f144c297b..32d7ec3e04d6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server.md @@ -6,6 +6,10 @@ hide: jupyter-server ============== + +The Jupyter Server provides the backend (i.e. the core services, APIs, and RESTendpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, andVoila. + +https://jupyter.org/ # Available modules @@ -17,10 +21,29 @@ To start using jupyter-server, load one of these modules using a `module load` c module load jupyter-server/2.7.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |jupyter-server/2.7.2-GCCcore-12.3.0|x|x|x|x|x|x| |jupyter-server/2.7.0-GCCcore-12.2.0|x|x|x|x|x|x| |jupyter-server/1.21.0-GCCcore-11.3.0|x|x|x|x|x|x| + + +### jupyter-server/2.7.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +anyio-3.7.1, argon2-cffi-bindings-21.2.0, argon2_cffi-23.1.0, arrow-1.2.3, bleach-6.0.0, comm-0.1.4, debugpy-1.6.7.post1, defusedxml-0.7.1, deprecation-2.1.0, fastjsonschema-2.18.0, hatch_jupyter_builder-0.8.3, hatch_nodejs_version-0.3.1, ipykernel-6.25.1, ipython_genutils-0.2.0, ipywidgets-8.1.0, jsonschema-4.18.0, jsonschema_specifications-2023.7.1, jupyter_client-8.3.0, jupyter_core-5.3.1, jupyter_events-0.7.0, jupyter_packaging-0.12.3, jupyter_server-2.7.2, jupyter_server_terminals-0.4.4, jupyterlab_pygments-0.2.2, jupyterlab_widgets-3.0.8, mistune-3.0.1, nbclient-0.8.0, nbconvert-7.7.4, nbformat-5.9.2, nest_asyncio-1.5.7, notebook_shim-0.2.3, overrides-7.4.0, pandocfilters-1.5.0, prometheus_client-0.17.1, python-json-logger-2.0.7, referencing-0.30.2, rfc3339_validator-0.1.4, rfc3986_validator-0.1.1, rpds_py-0.9.2, Send2Trash-1.8.2, sniffio-1.3.0, terminado-0.17.1, tinycss2-1.2.1, websocket-client-1.6.1, widgetsnbextension-4.0.8 + +### jupyter-server/2.7.0-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +anyio-3.7.1, argon2-cffi-21.3.0, argon2-cffi-bindings-21.2.0, arrow-1.2.3, bleach-6.0.0, comm-0.1.3, debugpy-1.6.7, defusedxml-0.7.1, deprecation-2.1.0, fastjsonschema-2.17.1, hatch_jupyter_builder-0.8.3, hatch_nodejs_version-0.3.1, ipykernel-6.25.0, ipython_genutils-0.2.0, ipywidgets-8.0.7, jupyter_client-8.3.0, jupyter_core-5.3.1, jupyter_events-0.6.3, jupyter_packaging-0.12.3, jupyter_server-2.7.0, jupyter_server_terminals-0.4.4, jupyterlab_pygments-0.2.2, jupyterlab_widgets-3.0.8, mistune-3.0.1, nbclassic-1.0.0, nbclient-0.8.0, nbconvert-7.7.2, nbformat-5.9.1, nest_asyncio-1.5.7, notebook_shim-0.2.3, overrides-7.3.1, pandocfilters-1.5.0, prometheus_client-0.17.1, python-json-logger-2.0.7, pyzmq-25.1.0, rfc3339_validator-0.1.4, rfc3986_validator-0.1.1, Send2Trash-1.8.2, sniffio-1.3.0, terminado-0.17.1, tinycss2-1.2.1, tornado-6.3.2, websocket-client-1.6.1, widgetsnbextension-4.0.8 + +### jupyter-server/1.21.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +anyio-3.6.1, jupyter_server-1.21.0, nbclassic-0.4.8, notebook_shim-0.1.0, sniffio-1.3.0, websocket-client-1.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jxrlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jxrlib.md index 1f6e958a908f..1b6ddf294006 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jxrlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jxrlib.md @@ -6,6 +6,10 @@ hide: jxrlib ====== + +Open source implementation of jpegxr + +https://github.com/4creators/jxrlib # Available modules @@ -17,7 +21,7 @@ To start using jxrlib, load one of these modules using a `module load` command l module load jxrlib/1.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kallisto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kallisto.md index 40aa813765ec..ef81ca81f420 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kallisto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kallisto.md @@ -6,6 +6,10 @@ hide: kallisto ======== + +kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. + +https://pachterlab.github.io/kallisto/ # Available modules @@ -17,7 +21,7 @@ To start using kallisto, load one of these modules using a `module load` command module load kallisto/0.48.0-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kb-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kb-python.md index 01295ba6478e..1396d58d1ed9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kb-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kb-python.md @@ -6,6 +6,10 @@ hide: kb-python ========= + +kallisto | bustools is a workflow for pre-processing single-cell RNA-seq data. Pre-processing single-cell RNA-seq involves: (1) association of reads with their cells of origin, (2) collapsing of reads according to unique molecular identifiers (UMIs), and (3) generation of gene or feature counts from the reads to generate a cell x gene matrix. + +https://www.kallistobus.tools/ # Available modules @@ -17,8 +21,15 @@ To start using kb-python, load one of these modules using a `module load` comman module load kb-python/0.27.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |kb-python/0.27.3-foss-2022a|x|x|x|x|x|x| + + +### kb-python/0.27.3-foss-2022a + +This is a list of extensions included in the module: + +kb-python-0.27.3, ngs-tools-1.8.3, plotly-5.15.0, shortuuid-1.0.11, tenacity-8.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kim-api.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kim-api.md index 374cf310fbcb..1edf76c9ea00 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kim-api.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kim-api.md @@ -6,6 +6,10 @@ hide: kim-api ======= + +Open Knowledgebase of Interatomic Models.KIM is an API and OpenKIM is a collection of interatomic models (potentials) foratomistic simulations. This is a library that can be used by simulation programsto get access to the models in the OpenKIM database.This EasyBuild only installs the API, the models can be installed with thepackage openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAMEor kim-api-collections-management install user OpenKIMto install them all. + +https://openkim.org/ # Available modules @@ -17,7 +21,7 @@ To start using kim-api, load one of these modules using a `module load` command module load kim-api/2.3.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kineto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kineto.md index 4ec5a99a028e..cd0fb59ba708 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kineto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kineto.md @@ -6,6 +6,10 @@ hide: kineto ====== + +A CPU+GPU Profiling library that provides access to timeline traces and hardware performance counters + +https://github.com/pytorch/kineto # Available modules @@ -17,7 +21,7 @@ To start using kineto, load one of these modules using a `module load` command l module load kineto/0.4.0-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kma.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kma.md index d583cc6f6309..5c0b1d6f854e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kma.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kma.md @@ -6,6 +6,10 @@ hide: kma === + +KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. + +https://bitbucket.org/genomicepidemiology/kma # Available modules @@ -17,7 +21,7 @@ To start using kma, load one of these modules using a `module load` command like module load kma/1.2.22-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kneaddata.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kneaddata.md index c847b5354f52..87d3ed721380 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kneaddata.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kneaddata.md @@ -6,6 +6,10 @@ hide: kneaddata ========= + +KneadData is a tool designed to perform quality control on metagenomic andmetatranscriptomic sequencing data, especially data from microbiome experiments. + +http://huttenhower.sph.harvard.edu/kneaddata # Available modules @@ -17,8 +21,15 @@ To start using kneaddata, load one of these modules using a `module load` comman module load kneaddata/0.12.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |kneaddata/0.12.0-foss-2022a|x|x|x|x|x|x| + + +### kneaddata/0.12.0-foss-2022a + +This is a list of extensions included in the module: + +kneaddata-0.12.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/krbalancing.md b/mkdocs/docs/HPC/only/gent/available_software/detail/krbalancing.md index b05904c1c0ad..d399206d00e7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/krbalancing.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/krbalancing.md @@ -6,6 +6,10 @@ hide: krbalancing =========== + +A C++ extension for Python which computes K.R. balanced matrices. + +https://github.com/deeptools/Knight-Ruiz-Matrix-balancing-algorithm # Available modules @@ -17,8 +21,15 @@ To start using krbalancing, load one of these modules using a `module load` comm module load krbalancing/0.5.0b0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |krbalancing/0.5.0b0-GCCcore-11.3.0|x|x|x|x|x|x| + + +### krbalancing/0.5.0b0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +krbalancing-0.5.0b0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lancet.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lancet.md index 7b0b04fff36c..27595e816125 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lancet.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lancet.md @@ -6,6 +6,10 @@ hide: lancet ====== + +Lancet is a somatic variant caller (SNVs and indels) for short read data. + +https://github.com/nygenome/lancet # Available modules @@ -17,7 +21,7 @@ To start using lancet, load one of these modules using a `module load` command l module load lancet/1.1.0-iccifort-2019.5.281 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lavaan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lavaan.md index 5607a2934e48..2e1dc997fc50 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lavaan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lavaan.md @@ -6,6 +6,10 @@ hide: lavaan ====== + +Fit a variety of latent variable models, including confirmatory factor analysis, structural equation modeling and latent growth curve models. + +https://cran.r-project.org/web/packages/lavaan # Available modules @@ -17,7 +21,7 @@ To start using lavaan, load one of these modules using a `module load` command l module load lavaan/0.6-9-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/leafcutter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/leafcutter.md index c89b6beedd19..adce0f532615 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/leafcutter.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/leafcutter.md @@ -6,6 +6,10 @@ hide: leafcutter ========== + +Leafcutter quantifies RNA splicing variation using short-read RNA-seq data. The core idea is to leverage spliced reads (reads that span an intron) to quantify (differential) intron usage across samples. The advantages of this approach include: easy detection of novel introns, modeling of more complex splicing events than exonic PSI, avoiding the challenge of isoform abundance estimation, simple, computationally efficient algorithms scaling to 100s or even 1000s of samples. For details please see our bioRxiv preprint and corresponding Nature Genetics publication. + +http://davidaknowles.github.io/leafcutter/index.html # Available modules @@ -17,7 +21,7 @@ To start using leafcutter, load one of these modules using a `module load` comma module load leafcutter/0.2.9-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/legacy-job-wrappers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/legacy-job-wrappers.md index be812eb63763..7c813d25cf57 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/legacy-job-wrappers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/legacy-job-wrappers.md @@ -6,6 +6,8 @@ hide: legacy-job-wrappers =================== + +Legacy wrappers for job commands (qsub, qstat, ...) # Available modules @@ -17,7 +19,7 @@ To start using legacy-job-wrappers, load one of these modules using a `module lo module load legacy-job-wrappers/0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/leidenalg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/leidenalg.md index edab42574a92..bcee071320cf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/leidenalg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/leidenalg.md @@ -6,6 +6,10 @@ hide: leidenalg ========= + +Implementation of the Leiden algorithm for various qualityfunctions to be used with igraph in Python. + +https://github.com/vtraag/leidenalg # Available modules @@ -17,7 +21,7 @@ To start using leidenalg, load one of these modules using a `module load` comman module load leidenalg/0.10.2-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,46 @@ module load leidenalg/0.10.2-foss-2023a |leidenalg/0.8.3-fosscuda-2020b|-|-|-|-|x|-| |leidenalg/0.8.3-foss-2020b|-|x|x|x|x|x| |leidenalg/0.8.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### leidenalg/0.10.2-foss-2023a + +This is a list of extensions included in the module: + +ddt-1.7.2, leidenalg-0.10.2 + +### leidenalg/0.9.1-foss-2022a + +This is a list of extensions included in the module: + +ddt-1.6.0, leidenalg-0.9.1 + +### leidenalg/0.8.8-foss-2021b + +This is a list of extensions included in the module: + +ddt-1.4.4, leidenalg-0.8.8 + +### leidenalg/0.8.7-foss-2021a + +This is a list of extensions included in the module: + +ddt-1.4.2, leidenalg-0.8.7 + +### leidenalg/0.8.3-fosscuda-2020b + +This is a list of extensions included in the module: + +ddt-1.4.2, leidenalg-0.8.3 + +### leidenalg/0.8.3-foss-2020b + +This is a list of extensions included in the module: + +ddt-1.4.2, leidenalg-0.8.3 + +### leidenalg/0.8.2-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +ddt-1.4.1, leidenalg-0.8.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lftp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lftp.md index db37576aa9b2..94fcb8a55646 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lftp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lftp.md @@ -6,6 +6,10 @@ hide: lftp ==== + +LFTP is a sophisticated ftp/http client, and a file transfer program supportinga number of network protocols. Like BASH, it has job control and uses the readline library forinput. It has bookmarks, a built-in mirror command, and can transfer several files in parallel.It was designed with reliability in mind. + +https://lftp.yar.ru # Available modules @@ -17,7 +21,7 @@ To start using lftp, load one of these modules using a `module load` command lik module load lftp/4.9.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libBigWig.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libBigWig.md index f597ffc8ee50..2f98575fa17b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libBigWig.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libBigWig.md @@ -6,6 +6,10 @@ hide: libBigWig ========= + +A C library for handling bigWig files + +https://github.com/dpryan79/libBigWig # Available modules @@ -17,7 +21,7 @@ To start using libBigWig, load one of these modules using a `module load` comman module load libBigWig/0.4.4-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libFLAME.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libFLAME.md index 978db959f088..c4f254b3fd71 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libFLAME.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libFLAME.md @@ -6,6 +6,10 @@ hide: libFLAME ======== + +libFLAME is a portable library for dense matrix computations,providing much of the functionality present in LAPACK. + +https://developer.amd.com/amd-cpu-libraries/blas-library/#libflame # Available modules @@ -17,7 +21,7 @@ To start using libFLAME, load one of these modules using a `module load` command module load libFLAME/5.2.0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libGLU.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libGLU.md index 07f5400ff497..aa3532016bec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libGLU.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libGLU.md @@ -6,6 +6,10 @@ hide: libGLU ====== + +The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. + +https://mesa.freedesktop.org/archive/glu/ # Available modules @@ -17,7 +21,7 @@ To start using libGLU, load one of these modules using a `module load` command l module load libGLU/9.0.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libRmath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libRmath.md index 65eb309387d9..68e0621b8d55 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libRmath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libRmath.md @@ -6,6 +6,10 @@ hide: libRmath ======== + +The routines supporting the distribution and special functions in R and a few others are declared in C header file Rmath.h. These can be compiled into a standalone library for linking to other applications. + +https://cran.r-project.org/doc/manuals/r-release/R-admin.html#The-standalone-Rmath-library # Available modules @@ -17,7 +21,7 @@ To start using libRmath, load one of these modules using a `module load` command module load libRmath/4.1.0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libaec.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libaec.md index e27141892722..f876e647535e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libaec.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libaec.md @@ -6,6 +6,10 @@ hide: libaec ====== + +Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers(samples). The library achieves best results for low entropy data as often encountered in space imaginginstrument data or numerical model output from weather or climate simulations. While floating point representationsare not directly supported, they can also be efficiently coded by grouping exponents and mantissa. + +https://gitlab.dkrz.de/k202009/libaec # Available modules @@ -17,7 +21,7 @@ To start using libaec, load one of these modules using a `module load` command l module load libaec/1.0.6-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libaio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libaio.md index bb4a0cb41145..4b03af53c176 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libaio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libaio.md @@ -6,6 +6,10 @@ hide: libaio ====== + +Asynchronous input/output library that uses the kernels native interface. + +https://pagure.io/libaio # Available modules @@ -17,7 +21,7 @@ To start using libaio, load one of these modules using a `module load` command l module load libaio/0.3.113-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libarchive.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libarchive.md index 916d6c8ddd53..b983ec3eb1e2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libarchive.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libarchive.md @@ -6,6 +6,10 @@ hide: libarchive ========== + +Multi-format archive and compression library + +https://www.libarchive.org/ # Available modules @@ -17,7 +21,7 @@ To start using libarchive, load one of these modules using a `module load` comma module load libarchive/3.7.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libavif.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libavif.md index 948aa5219931..46f459b5cc1e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libavif.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libavif.md @@ -6,6 +6,10 @@ hide: libavif ======= + +This library aims to be a friendly, portable C implementation of the AV1 Image File Format,as described here: https://aomediacodec.github.io/av1-avif/ + +https://github.com/AOMediaCodec/libavif # Available modules @@ -17,7 +21,7 @@ To start using libavif, load one of these modules using a `module load` command module load libavif/0.11.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libcdms.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libcdms.md index 675a94b65611..8bc218054115 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libcdms.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libcdms.md @@ -6,6 +6,10 @@ hide: libcdms ======= + +Climate Data Management System Library. + +https://github.com/CDAT/libcdms/ # Available modules @@ -17,7 +21,7 @@ To start using libcdms, load one of these modules using a `module load` command module load libcdms/3.1.2-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libcerf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libcerf.md index e8b2bd1952eb..abb1eb241829 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libcerf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libcerf.md @@ -6,6 +6,10 @@ hide: libcerf ======= + +libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions. + +https://jugit.fz-juelich.de/mlz/libcerf # Available modules @@ -17,7 +21,7 @@ To start using libcerf, load one of these modules using a `module load` command module load libcerf/2.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libcint.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libcint.md index 4a8d68aa6ab6..9b903b857161 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libcint.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libcint.md @@ -6,6 +6,10 @@ hide: libcint ======= + +libcint is an open source library for analytical Gaussian integrals. + +https://github.com/sunqm/libcint # Available modules @@ -17,7 +21,7 @@ To start using libcint, load one of these modules using a `module load` command module load libcint/5.5.0-gfbf-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libdap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libdap.md index 25da3322adbb..d5fc66e0875e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libdap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libdap.md @@ -6,6 +6,10 @@ hide: libdap ====== + +A C++ SDK which contains an implementation of DAP 2.0 and DAP4.0. This includes both Client- and Server-side support classes. + +https://www.opendap.org/software/libdap # Available modules @@ -17,7 +21,7 @@ To start using libdap, load one of these modules using a `module load` command l module load libdap/3.20.7-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libde265.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libde265.md index d4a66496da6a..a9442fb467a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libde265.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libde265.md @@ -6,6 +6,10 @@ hide: libde265 ======== + +libde265 is an open source implementation of the h.265 video codec + +https://github.com/strukturag/libde265 # Available modules @@ -17,7 +21,7 @@ To start using libde265, load one of these modules using a `module load` command module load libde265/1.0.11-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libdeflate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libdeflate.md index 1232cd6aa2c8..b7fdd2602c5e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libdeflate.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libdeflate.md @@ -6,6 +6,10 @@ hide: libdeflate ========== + +Heavily optimized library for DEFLATE/zlib/gzip compression and decompression. + +https://github.com/ebiggers/libdeflate # Available modules @@ -17,7 +21,7 @@ To start using libdeflate, load one of these modules using a `module load` comma module load libdeflate/1.19-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libdrm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libdrm.md index 132a858c2252..b09096a4dc5a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libdrm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libdrm.md @@ -6,6 +6,10 @@ hide: libdrm ====== + +Direct Rendering Manager runtime library. + +https://dri.freedesktop.org # Available modules @@ -17,7 +21,7 @@ To start using libdrm, load one of these modules using a `module load` command l module load libdrm/2.4.115-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libdrs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libdrs.md index ef71f7baa5b3..52fbf29fa336 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libdrs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libdrs.md @@ -6,6 +6,10 @@ hide: libdrs ====== + +PCMDI's old DRS format implementation + +https://github.com/CDAT/libdrs/ # Available modules @@ -17,7 +21,7 @@ To start using libdrs, load one of these modules using a `module load` command l module load libdrs/3.1.2-foss-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libepoxy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libepoxy.md index 75f07e3475f0..ab170e533820 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libepoxy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libepoxy.md @@ -6,6 +6,10 @@ hide: libepoxy ======== + +Epoxy is a library for handling OpenGL function pointer management for you + +https://github.com/anholt/libepoxy # Available modules @@ -17,7 +21,7 @@ To start using libepoxy, load one of these modules using a `module load` command module load libepoxy/1.5.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libev.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libev.md index 674ec6228ddc..2f8501ec8fd0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libev.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libev.md @@ -6,6 +6,10 @@ hide: libev ===== + +A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and bugs. It is used in GNU Virtual Private Ethernet, rxvt-unicode, auditd, the Deliantra MORPG Server and Client, and many other programs. + +http://software.schmorp.de/pkg/libev.html # Available modules @@ -17,7 +21,7 @@ To start using libev, load one of these modules using a `module load` command li module load libev/4.33-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libevent.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libevent.md index cc70e31ce84a..338d758048ba 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libevent.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libevent.md @@ -6,6 +6,10 @@ hide: libevent ======== + +The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. + +https://libevent.org # Available modules @@ -17,7 +21,7 @@ To start using libevent, load one of these modules using a `module load` command module load libevent/2.1.12-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libfabric.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libfabric.md index 02158b1a1f39..a18553313232 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libfabric.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libfabric.md @@ -6,6 +6,10 @@ hide: libfabric ========= + +Libfabric is a core component of OFI. It is the library that defines and exportsthe user-space API of OFI, and is typically the only software that applicationsdeal with directly. It works in conjunction with provider libraries, which areoften integrated directly into libfabric. + +https://ofiwg.github.io/libfabric/ # Available modules @@ -17,7 +21,7 @@ To start using libfabric, load one of these modules using a `module load` comman module load libfabric/1.19.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libffi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libffi.md index 96902ad233de..39256fa6a822 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libffi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libffi.md @@ -6,6 +6,10 @@ hide: libffi ====== + +The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time. + +http://sourceware.org/libffi/ # Available modules @@ -17,7 +21,7 @@ To start using libffi, load one of these modules using a `module load` command l module load libffi/3.4.4-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgcrypt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgcrypt.md index fe316cc7d7cb..77d5e7410748 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgcrypt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgcrypt.md @@ -6,6 +6,10 @@ hide: libgcrypt ========= + +Libgcrypt is a general purpose cryptographic library originally based on code from GnuPG + +https://gnupg.org/related_software/libgcrypt/index.html # Available modules @@ -17,7 +21,7 @@ To start using libgcrypt, load one of these modules using a `module load` comman module load libgcrypt/1.9.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgd.md index e236f165cedb..2ed6a3262405 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgd.md @@ -6,6 +6,10 @@ hide: libgd ===== + +GD is an open source code library for the dynamic creation of images by programmers. + +https://libgd.github.io/ # Available modules @@ -17,7 +21,7 @@ To start using libgd, load one of these modules using a `module load` command li module load libgd/2.3.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgeotiff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgeotiff.md index 873eccbaf868..de335178f29c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgeotiff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgeotiff.md @@ -6,6 +6,10 @@ hide: libgeotiff ========== + +Library for reading and writing coordinate system information from/to GeoTIFF files + +https://directory.fsf.org/wiki/Libgeotiff # Available modules @@ -17,7 +21,7 @@ To start using libgeotiff, load one of these modules using a `module load` comma module load libgeotiff/1.7.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgit2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgit2.md index da1724a2b5d1..dff7270d8330 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgit2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgit2.md @@ -6,6 +6,10 @@ hide: libgit2 ======= + +libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrantlinkable library with a solid API, allowing you to write native speed custom Git applications in any languagewhich supports C bindings. + +https://libgit2.org/ # Available modules @@ -17,7 +21,7 @@ To start using libgit2, load one of these modules using a `module load` command module load libgit2/1.7.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libglvnd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libglvnd.md index 3830fdb6b860..c33b90963c25 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libglvnd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libglvnd.md @@ -6,6 +6,10 @@ hide: libglvnd ======== + +libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. + +https://github.com/NVIDIA/libglvnd # Available modules @@ -17,7 +21,7 @@ To start using libglvnd, load one of these modules using a `module load` command module load libglvnd/1.6.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgpg-error.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgpg-error.md index e873d97eb97c..667fdf14747f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgpg-error.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgpg-error.md @@ -6,6 +6,10 @@ hide: libgpg-error ============ + +Libgpg-error is a small library that defines common error values for all GnuPG components. + +https://gnupg.org/related_software/libgpg-error/index.html # Available modules @@ -17,7 +21,7 @@ To start using libgpg-error, load one of these modules using a `module load` com module load libgpg-error/1.42-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgpuarray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgpuarray.md index 37bac435a909..858abb13a416 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgpuarray.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgpuarray.md @@ -6,6 +6,10 @@ hide: libgpuarray =========== + +Library to manipulate tensors on the GPU. + +http://deeplearning.net/software/libgpuarray/ # Available modules @@ -17,8 +21,15 @@ To start using libgpuarray, load one of these modules using a `module load` comm module load libgpuarray/0.7.6-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |libgpuarray/0.7.6-fosscuda-2020b|x|-|-|-|x|-| + + +### libgpuarray/0.7.6-fosscuda-2020b + +This is a list of extensions included in the module: + +libgpuarray-0.7.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libharu.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libharu.md index 14220e88c94e..49b24bef7e61 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libharu.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libharu.md @@ -6,6 +6,10 @@ hide: libharu ======= + +libHaru is a free, cross platform, open source library forgenerating PDF files. + +https://github.com/libharu/libharu/ # Available modules @@ -17,7 +21,7 @@ To start using libharu, load one of these modules using a `module load` command module load libharu/2.3.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libheif.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libheif.md index fe0c086b9e9a..4e996824c5e6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libheif.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libheif.md @@ -6,6 +6,10 @@ hide: libheif ======= + +libheif is an HEIF and AVIF file format decoder and encoder + +https://github.com/strukturag/libheif # Available modules @@ -17,7 +21,7 @@ To start using libheif, load one of these modules using a `module load` command module load libheif/1.16.2-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libiconv.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libiconv.md index 579aaff04a8f..0c380680f4d7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libiconv.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libiconv.md @@ -6,6 +6,10 @@ hide: libiconv ======== + +Libiconv converts from one character encoding to another through Unicode conversion + +https://www.gnu.org/software/libiconv # Available modules @@ -17,7 +21,7 @@ To start using libiconv, load one of these modules using a `module load` command module load libiconv/1.17-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libidn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libidn.md index 7f10eb7b5081..0a1e247e2e32 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libidn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libidn.md @@ -6,6 +6,10 @@ hide: libidn ====== + +GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications.Libidn's purpose is to encode and decode internationalized domain names. + +http://www.gnu.org/software/libidn # Available modules @@ -17,7 +21,7 @@ To start using libidn, load one of these modules using a `module load` command l module load libidn/1.38-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libidn2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libidn2.md index 1461229c3fd2..d8eed44e4403 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libidn2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libidn2.md @@ -6,6 +6,10 @@ hide: libidn2 ======= + +GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications.Libidn's purpose is to encode and decode internationalized domain names. + +https://www.gnu.org/software/libidn # Available modules @@ -17,7 +21,7 @@ To start using libidn2, load one of these modules using a `module load` command module load libidn2/2.3.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libjpeg-turbo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libjpeg-turbo.md index 3df2ae70089d..977660f273e2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libjpeg-turbo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libjpeg-turbo.md @@ -6,6 +6,10 @@ hide: libjpeg-turbo ============= + +libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. + +https://sourceforge.net/projects/libjpeg-turbo/ # Available modules @@ -17,7 +21,7 @@ To start using libjpeg-turbo, load one of these modules using a `module load` co module load libjpeg-turbo/3.0.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libjxl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libjxl.md index 3676e26ad8d5..cdb02927a851 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libjxl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libjxl.md @@ -6,6 +6,10 @@ hide: libjxl ====== + +JPEG XL image format reference implementation + +https://github.com/libjxl/libjxl # Available modules @@ -17,7 +21,7 @@ To start using libjxl, load one of these modules using a `module load` command l module load libjxl/0.8.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libleidenalg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libleidenalg.md index 21ad12a0eba8..e5f04ee8b27c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libleidenalg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libleidenalg.md @@ -6,6 +6,10 @@ hide: libleidenalg ============ + +Implements the Leiden algorithm in C++ + +https://github.com/vtraag/libleidenalg # Available modules @@ -17,7 +21,7 @@ To start using libleidenalg, load one of these modules using a `module load` com module load libleidenalg/0.11.1-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libmad.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libmad.md index 0d2209e483b9..cf0ade950cad 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libmad.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libmad.md @@ -6,6 +6,10 @@ hide: libmad ====== + +MAD is a high-quality MPEG audio decoder. + +https://www.underbit.com/products/mad/ # Available modules @@ -17,7 +21,7 @@ To start using libmad, load one of these modules using a `module load` command l module load libmad/0.15.1b-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libmatheval.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libmatheval.md index bbe8bf68db51..62f7820d5426 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libmatheval.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libmatheval.md @@ -6,6 +6,10 @@ hide: libmatheval =========== + +GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text. + +https://www.gnu.org/software/libmatheval/ # Available modules @@ -17,7 +21,7 @@ To start using libmatheval, load one of these modules using a `module load` comm module load libmatheval/1.1.11-GCCcore-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libmaus2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libmaus2.md index 0dca0218e8f9..0acf67a910c5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libmaus2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libmaus2.md @@ -6,6 +6,10 @@ hide: libmaus2 ======== + +libmaus2 is a collection of data structures and algorithms. + +https://github.com/gt1/libmaus2 # Available modules @@ -17,7 +21,7 @@ To start using libmaus2, load one of these modules using a `module load` command module load libmaus2/2.0.813-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libmypaint.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libmypaint.md index a240e05fd340..63bba205678d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libmypaint.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libmypaint.md @@ -6,6 +6,10 @@ hide: libmypaint ========== + +libmypaint, a.k.a. "brushlib", is a library for making brushstrokes which is used by MyPaint and other projects + +https://github.com/mypaint/libmypaint # Available modules @@ -17,7 +21,7 @@ To start using libmypaint, load one of these modules using a `module load` comma module load libmypaint/1.6.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libobjcryst.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libobjcryst.md index f653e65a05e2..97f1ed71a467 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libobjcryst.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libobjcryst.md @@ -6,6 +6,10 @@ hide: libobjcryst =========== + +ObjCryst++ is Object-Oriented Crystallographic Library for C++ + +https://github.com/diffpy/libobjcryst # Available modules @@ -17,7 +21,7 @@ To start using libobjcryst, load one of these modules using a `module load` comm module load libobjcryst/2021.1.2-intel-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libogg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libogg.md index fe2b44698d68..bede85d3e414 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libogg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libogg.md @@ -6,6 +6,10 @@ hide: libogg ====== + +Ogg is a multimedia container format, and the native file and stream format for the Xiph.orgmultimedia codecs. + +https://xiph.org/ogg/ # Available modules @@ -17,7 +21,7 @@ To start using libogg, load one of these modules using a `module load` command l module load libogg/1.3.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libopus.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libopus.md index ecd3fd01d3a7..19dd3486ec62 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libopus.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libopus.md @@ -6,6 +6,10 @@ hide: libopus ======= + +Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec. + +https://www.opus-codec.org/ # Available modules @@ -17,7 +21,7 @@ To start using libopus, load one of these modules using a `module load` command module load libopus/1.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libpciaccess.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libpciaccess.md index 1db6a7a1f16c..4d60eb3856ce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libpciaccess.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libpciaccess.md @@ -6,6 +6,10 @@ hide: libpciaccess ============ + +Generic PCI access library. + +https://cgit.freedesktop.org/xorg/lib/libpciaccess/ # Available modules @@ -17,7 +21,7 @@ To start using libpciaccess, load one of these modules using a `module load` com module load libpciaccess/0.17-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libpng.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libpng.md index c642cefb2638..e6ba0b842d77 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libpng.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libpng.md @@ -6,6 +6,10 @@ hide: libpng ====== + +libpng is the official PNG reference library + +http://www.libpng.org/pub/png/libpng.html # Available modules @@ -17,7 +21,7 @@ To start using libpng, load one of these modules using a `module load` command l module load libpng/1.6.40-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libpsl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libpsl.md index 0289e8a2de51..caa2ff55ffce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libpsl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libpsl.md @@ -6,6 +6,10 @@ hide: libpsl ====== + +C library for the Public Suffix List + +https://rockdaboot.github.io/libpsl # Available modules @@ -17,7 +21,7 @@ To start using libpsl, load one of these modules using a `module load` command l module load libpsl/0.21.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libreadline.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libreadline.md index e57ea060a11a..6970327e8217 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libreadline.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libreadline.md @@ -6,6 +6,10 @@ hide: libreadline =========== + +The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. + +http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html # Available modules @@ -17,7 +21,7 @@ To start using libreadline, load one of these modules using a `module load` comm module load libreadline/8.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/librosa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/librosa.md index aeb77ce7fa14..f0f822f5a04e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/librosa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/librosa.md @@ -6,6 +6,10 @@ hide: librosa ======= + +Python module for audio and music processing + +https://librosa.github.io # Available modules @@ -17,8 +21,15 @@ To start using librosa, load one of these modules using a `module load` command module load librosa/0.7.2-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |librosa/0.7.2-foss-2019b-Python-3.7.4|-|-|x|-|x|x| + + +### librosa/0.7.2-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +audioread-2.1.8, librosa-0.7.2, resampy-0.2.2, SoundFile-0.10.3.post1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/librsvg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/librsvg.md index 3243fbd01b4c..728677cdf494 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/librsvg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/librsvg.md @@ -6,6 +6,10 @@ hide: librsvg ======= + +Librsvg is a library to render SVG files using cairo. + +https://wiki.gnome.org/Projects/LibRsvg # Available modules @@ -17,7 +21,7 @@ To start using librsvg, load one of these modules using a `module load` command module load librsvg/2.51.2-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/librttopo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/librttopo.md index bcc2959d6fe0..5b9dae4a70d9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/librttopo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/librttopo.md @@ -6,6 +6,10 @@ hide: librttopo ========= + +The RT Topology Library exposes an API to create andmanage standard (ISO 13249 aka SQL/MM) topologies using user-provideddata stores. + +https://git.osgeo.org/gitea/rttopo/librttopo # Available modules @@ -17,7 +21,7 @@ To start using librttopo, load one of these modules using a `module load` comman module load librttopo/1.1.0-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libsigc++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libsigc++.md index d4c6daba2348..0b0bb201f415 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libsigc++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libsigc++.md @@ -6,6 +6,10 @@ hide: libsigc++ ========= + +The libsigc++ package implements a typesafe callback system for standard C++. + +https://libsigcplusplus.github.io/libsigcplusplus/ # Available modules @@ -17,7 +21,7 @@ To start using libsigc++, load one of these modules using a `module load` comman module load libsigc++/2.10.8-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libsndfile.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libsndfile.md index fd297bc295f3..1dcfeb1a3f8f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libsndfile.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libsndfile.md @@ -6,6 +6,10 @@ hide: libsndfile ========== + +Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface. + +http://www.mega-nerd.com/libsndfile # Available modules @@ -17,7 +21,7 @@ To start using libsndfile, load one of these modules using a `module load` comma module load libsndfile/1.2.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libsodium.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libsodium.md index d97720b4188a..4e93acdf95ac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libsodium.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libsodium.md @@ -6,6 +6,10 @@ hide: libsodium ========= + +Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. + +https://doc.libsodium.org/ # Available modules @@ -17,7 +21,7 @@ To start using libsodium, load one of these modules using a `module load` comman module load libsodium/1.0.18-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialindex.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialindex.md index 50f6df484b20..cd51607a1e09 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialindex.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialindex.md @@ -6,6 +6,10 @@ hide: libspatialindex =============== + +C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API + +https://libspatialindex.org # Available modules @@ -17,7 +21,7 @@ To start using libspatialindex, load one of these modules using a `module load` module load libspatialindex/1.9.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialite.md index 835c05ac84ca..9cc7f0f60e7b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialite.md @@ -6,6 +6,10 @@ hide: libspatialite ============= + +SpatiaLite is an open source library intended to extend the SQLite core to support fully fledged Spatial SQL capabilities. + +https://www.gaia-gis.it/fossil/libspatialite/home # Available modules @@ -17,7 +21,7 @@ To start using libspatialite, load one of these modules using a `module load` co module load libspatialite/5.0.1-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libtasn1.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libtasn1.md index 670d9cd59dea..4c5129f62144 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libtasn1.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libtasn1.md @@ -6,6 +6,10 @@ hide: libtasn1 ======== + +Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package. + +https://www.gnu.org/software/libtasn1/ # Available modules @@ -17,7 +21,7 @@ To start using libtasn1, load one of these modules using a `module load` command module load libtasn1/4.18.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libtirpc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libtirpc.md index fa48537c8fab..a2db392736bc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libtirpc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libtirpc.md @@ -6,6 +6,10 @@ hide: libtirpc ======== + +Libtirpc is a port of Suns Transport-Independent RPC library to Linux. + +https://sourceforge.net/projects/libtirpc/ # Available modules @@ -17,7 +21,7 @@ To start using libtirpc, load one of these modules using a `module load` command module load libtirpc/1.3.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libtool.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libtool.md index f6b51d6cefd1..b4e184543f74 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libtool.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libtool.md @@ -6,6 +6,10 @@ hide: libtool ======= + +GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. + +http://www.gnu.org/software/libtool # Available modules @@ -17,7 +21,7 @@ To start using libtool, load one of these modules using a `module load` command module load libtool/2.4.7-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libunistring.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libunistring.md index 0bbb106cf75e..44a460e12004 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libunistring.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libunistring.md @@ -6,6 +6,10 @@ hide: libunistring ============ + +This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard. + +https://www.gnu.org/software/libunistring/ # Available modules @@ -17,7 +21,7 @@ To start using libunistring, load one of these modules using a `module load` com module load libunistring/1.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libunwind.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libunwind.md index 40d825c35f3a..898bebd265f5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libunwind.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libunwind.md @@ -6,6 +6,10 @@ hide: libunwind ========= + +The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications + +https://www.nongnu.org/libunwind/ # Available modules @@ -17,7 +21,7 @@ To start using libunwind, load one of these modules using a `module load` comman module load libunwind/1.6.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libvdwxc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libvdwxc.md index da3bdaa12835..7d72b3602bf7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libvdwxc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libvdwxc.md @@ -6,6 +6,10 @@ hide: libvdwxc ======== + +libvdwxc is a general library for evaluating energy and potential forexchange-correlation (XC) functionals from the vdW-DF family that can be used with variousof density functional theory (DFT) codes. + +https://libvdwxc.org # Available modules @@ -17,7 +21,7 @@ To start using libvdwxc, load one of these modules using a `module load` command module load libvdwxc/0.4.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libvorbis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libvorbis.md index 00077ba92a2f..5dfd9542ff04 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libvorbis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libvorbis.md @@ -6,6 +6,10 @@ hide: libvorbis ========= + +Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressedaudio format + +https://xiph.org/vorbis/ # Available modules @@ -17,7 +21,7 @@ To start using libvorbis, load one of these modules using a `module load` comman module load libvorbis/1.3.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libvori.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libvori.md index e1efd0e8ad1f..cd3599609cb3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libvori.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libvori.md @@ -6,6 +6,10 @@ hide: libvori ======= + +C++ library implementing the Voronoi integration as well as the compressed bqbfile format. The present version of libvori is a very early developmentversion, which is hard-coded to work with the CP2k program package. + +https://brehm-research.de/libvori.php # Available modules @@ -17,7 +21,7 @@ To start using libvori, load one of these modules using a `module load` command module load libvori/220621-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libwebp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libwebp.md index 50f4edef4c71..1fa648c75441 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libwebp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libwebp.md @@ -6,6 +6,10 @@ hide: libwebp ======= + +WebP is a modern image format that provides superiorlossless and lossy compression for images on the web. Using WebP,webmasters and web developers can create smaller, richer images thatmake the web faster. + +https://developers.google.com/speed/webp/ # Available modules @@ -17,7 +21,7 @@ To start using libwebp, load one of these modules using a `module load` command module load libwebp/1.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libwpe.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libwpe.md index 3206bf40b0ed..9b96992cc9ae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libwpe.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libwpe.md @@ -6,6 +6,10 @@ hide: libwpe ====== + +WPE is the reference WebKit port for embedded andlow-consumption computer devices. It has been designed from theground-up with performance, small footprint, accelerated contentrendering, and simplicity of deployment in mind, bringing theexcellence of the WebKit engine to countless platforms and target devices. + +https://webkit.org/wpe # Available modules @@ -17,7 +21,7 @@ To start using libwpe, load one of these modules using a `module load` command l module load libwpe/1.13.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libxc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libxc.md index a06657212c73..9f2353aca0e8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libxc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libxc.md @@ -6,6 +6,10 @@ hide: libxc ===== + +Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. + +https://www.tddft.org/programs/libxc # Available modules @@ -17,7 +21,7 @@ To start using libxc, load one of these modules using a `module load` command li module load libxc/6.2.2-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libxml++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libxml++.md index 63fbd0c8dfca..4fbbc67945ed 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libxml++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libxml++.md @@ -6,6 +6,10 @@ hide: libxml++ ======== + +libxml++ is a C++ wrapper for the libxml XML parser library. + +http://libxmlplusplus.sourceforge.net # Available modules @@ -17,7 +21,7 @@ To start using libxml++, load one of these modules using a `module load` command module load libxml++/2.42.1-GCC-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libxml2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libxml2.md index cfd643625521..f65ad6ef9d65 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libxml2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libxml2.md @@ -6,6 +6,10 @@ hide: libxml2 ======= + +Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). + +http://xmlsoft.org/ # Available modules @@ -17,7 +21,7 @@ To start using libxml2, load one of these modules using a `module load` command module load libxml2/2.11.5-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libxslt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libxslt.md index 45b0c38cec8f..04a3ba9f44f5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libxslt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libxslt.md @@ -6,6 +6,10 @@ hide: libxslt ======= + +Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform). + +http://xmlsoft.org/ # Available modules @@ -17,7 +21,7 @@ To start using libxslt, load one of these modules using a `module load` command module load libxslt/1.1.38-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libxsmm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libxsmm.md index c14ac2446832..4cf678c8d61d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libxsmm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libxsmm.md @@ -6,6 +6,10 @@ hide: libxsmm ======= + +LIBXSMM is a library for small dense and small sparse matrix-matrix multiplicationstargeting Intel Architecture (x86). + +https://github.com/hfp/libxsmm # Available modules @@ -17,7 +21,7 @@ To start using libxsmm, load one of these modules using a `module load` command module load libxsmm/1.17-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libyaml.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libyaml.md index ea87215405d8..73fb4d764f9a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libyaml.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libyaml.md @@ -6,6 +6,10 @@ hide: libyaml ======= + +LibYAML is a YAML parser and emitter written in C. + +https://pyyaml.org/wiki/LibYAML # Available modules @@ -17,7 +21,7 @@ To start using libyaml, load one of these modules using a `module load` command module load libyaml/0.2.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libzip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libzip.md index b0d90c931f65..346cda0f23d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libzip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libzip.md @@ -6,6 +6,10 @@ hide: libzip ====== + +libzip is a C library for reading, creating, and modifying zip archives. + +https://libzip.org/ # Available modules @@ -17,7 +21,7 @@ To start using libzip, load one of these modules using a `module load` command l module load libzip/1.7.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lifelines.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lifelines.md index 5c235bb89685..07592a60cc3e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lifelines.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lifelines.md @@ -6,6 +6,10 @@ hide: lifelines ========= + +lifelines is a complete survival analysis library, written in pure Python. + +https://lifelines.readthedocs.io/en/latest/ # Available modules @@ -17,8 +21,15 @@ To start using lifelines, load one of these modules using a `module load` comman module load lifelines/0.27.4-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |lifelines/0.27.4-foss-2022a|x|x|x|x|x|x| + + +### lifelines/0.27.4-foss-2022a + +This is a list of extensions included in the module: + +astor-0.8.1, autograd-1.5, autograd-gamma-0.5.0, formulaic-0.4.0, interface_meta-1.3.0, lifelines-0.27.4, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/likwid.md b/mkdocs/docs/HPC/only/gent/available_software/detail/likwid.md index 6e5ac0f0db0d..4a8571a5505b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/likwid.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/likwid.md @@ -6,6 +6,10 @@ hide: likwid ====== + +Likwid stands for Like I knew what I am doing. This project contributes easy to use command line tools for Linux to support programmers in developing high performance multi threaded programs. + +https://github.com/RRZE-HPC/likwid # Available modules @@ -17,7 +21,7 @@ To start using likwid, load one of these modules using a `module load` command l module load likwid/5.0.1-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lmoments3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lmoments3.md index 12c031568a25..692601448c85 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lmoments3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lmoments3.md @@ -6,6 +6,10 @@ hide: lmoments3 ========= + +Estimate linear moments for statistical distribution functions. + +https://github.com/OpenHydrology/lmoments3 # Available modules @@ -17,8 +21,15 @@ To start using lmoments3, load one of these modules using a `module load` comman module load lmoments3/1.0.6-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |lmoments3/1.0.6-foss-2022a|x|x|x|x|x|x| + + +### lmoments3/1.0.6-foss-2022a + +This is a list of extensions included in the module: + +lmoments3-1.0.6, versioneer-0.29 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/longread_umi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/longread_umi.md index 2b68f715e562..c89f0032e274 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/longread_umi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/longread_umi.md @@ -6,6 +6,10 @@ hide: longread_umi ============ + +A collection of scripts for processing longread UMI data. + +https://github.com/SorenKarst/longread_umi # Available modules @@ -17,7 +21,7 @@ To start using longread_umi, load one of these modules using a `module load` com module load longread_umi/0.3.2-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/loomR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/loomR.md index 17eb9035d9a7..39ea2f4b5108 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/loomR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/loomR.md @@ -6,6 +6,10 @@ hide: loomR ===== + +An R interface for loom files + +https://github.com/mojaveazure/loomR # Available modules @@ -17,7 +21,7 @@ To start using loomR, load one of these modules using a `module load` command li module load loomR/0.2.0-20180425-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/loompy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/loompy.md index 9e82231e86da..73bd7a3438bc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/loompy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/loompy.md @@ -6,6 +6,10 @@ hide: loompy ====== + +Python implementation of the Loom file format, an efficient file format for large omics datasets + +https://loompy.org/ # Available modules @@ -17,7 +21,7 @@ To start using loompy, load one of these modules using a `module load` command l module load loompy/3.0.7-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,34 @@ module load loompy/3.0.7-intel-2021b |loompy/3.0.7-foss-2021b|x|x|x|-|x|x| |loompy/3.0.7-foss-2021a|x|x|x|x|x|x| |loompy/3.0.6-intel-2020b|-|x|x|-|x|x| + + +### loompy/3.0.7-intel-2021b + +This is a list of extensions included in the module: + +loompy-3.0.7, numpy_groupies-0.9.14 + +### loompy/3.0.7-foss-2022a + +This is a list of extensions included in the module: + +loompy-3.0.7, numpy-groupies-0.9.20 + +### loompy/3.0.7-foss-2021b + +This is a list of extensions included in the module: + +loompy-3.0.7, numpy_groupies-0.9.14 + +### loompy/3.0.7-foss-2021a + +This is a list of extensions included in the module: + +loompy-3.0.7, numpy_groupies-0.9.14 + +### loompy/3.0.6-intel-2020b + +This is a list of extensions included in the module: + +loompy-3.0.6, numpy_groupies-0.9.13 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/louvain.md b/mkdocs/docs/HPC/only/gent/available_software/detail/louvain.md index 3e4800985d91..715bf35ee078 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/louvain.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/louvain.md @@ -6,6 +6,10 @@ hide: louvain ======= + +louvain is a general algorithm for methods of community detection in large networks + +https://pypi.org/project/louvain # Available modules @@ -17,8 +21,15 @@ To start using louvain, load one of these modules using a `module load` command module load louvain/0.8.0-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |louvain/0.8.0-foss-2021a|x|x|x|x|x|x| + + +### louvain/0.8.0-foss-2021a + +This is a list of extensions included in the module: + +igraph-0.10.2, louvain-0.8.0, texttable-1.6.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lpsolve.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lpsolve.md index b518ba79e8f3..cd1ca56865bc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lpsolve.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lpsolve.md @@ -6,6 +6,10 @@ hide: lpsolve ======= + +Mixed Integer Linear Programming (MILP) solver + +https://sourceforge.net/projects/lpsolve/ # Available modules @@ -17,7 +21,7 @@ To start using lpsolve, load one of these modules using a `module load` command module load lpsolve/5.5.2.11-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lxml.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lxml.md index fbfa6facd0ec..27262d27e4d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lxml.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lxml.md @@ -6,6 +6,10 @@ hide: lxml ==== + +The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt. + +https://lxml.de/ # Available modules @@ -17,7 +21,7 @@ To start using lxml, load one of these modules using a `module load` command lik module load lxml/4.9.3-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lz4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lz4.md index 50be16ff22fb..2d185ab54504 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lz4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lz4.md @@ -6,6 +6,10 @@ hide: lz4 === + +LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core. + +https://lz4.github.io/lz4/ # Available modules @@ -17,7 +21,7 @@ To start using lz4, load one of these modules using a `module load` command like module load lz4/1.9.4-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/maeparser.md b/mkdocs/docs/HPC/only/gent/available_software/detail/maeparser.md index 0e9e504572d2..f19a100b1d4c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/maeparser.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/maeparser.md @@ -6,6 +6,10 @@ hide: maeparser ========= + +maeparser is a parser for Schrodinger Maestro files. + +https://github.com/schrodinger/maeparser # Available modules @@ -17,7 +21,7 @@ To start using maeparser, load one of these modules using a `module load` comman module load maeparser/1.3.0-iimpi-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/magma.md b/mkdocs/docs/HPC/only/gent/available_software/detail/magma.md index 85cab714d158..0e6932f87627 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/magma.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/magma.md @@ -6,6 +6,10 @@ hide: magma ===== + +The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems. + +https://icl.cs.utk.edu/magma/ # Available modules @@ -17,7 +21,7 @@ To start using magma, load one of these modules using a `module load` command li module load magma/2.7.2-foss-2023a-CUDA-12.1.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mahotas.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mahotas.md index 1e68e222b496..e3bb0c5a6fb2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mahotas.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mahotas.md @@ -6,6 +6,10 @@ hide: mahotas ======= + +Mahotas is a computer vision and image processing library for Python + +https://mahotas.readthedocs.io/ # Available modules @@ -17,7 +21,7 @@ To start using mahotas, load one of these modules using a `module load` command module load mahotas/1.4.13-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/make.md b/mkdocs/docs/HPC/only/gent/available_software/detail/make.md index 40270bacd1f5..d2f36f0223b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/make.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/make.md @@ -6,6 +6,10 @@ hide: make ==== + +GNU version of make utility + +https://www.gnu.org/software/make/make.html # Available modules @@ -17,7 +21,7 @@ To start using make, load one of these modules using a `module load` command lik module load make/4.4.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/makedepend.md b/mkdocs/docs/HPC/only/gent/available_software/detail/makedepend.md index bbae31a26828..3cc61a7c8bda 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/makedepend.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/makedepend.md @@ -6,6 +6,10 @@ hide: makedepend ========== + +The makedepend package contains a C-preprocessor like utility to determine build-time dependencies. + +https://linux.die.net/man/1/makedepend # Available modules @@ -17,7 +21,7 @@ To start using makedepend, load one of these modules using a `module load` comma module load makedepend/1.0.6-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/makeinfo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/makeinfo.md index 5d5cdacfa813..357c2e58fa8f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/makeinfo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/makeinfo.md @@ -6,6 +6,10 @@ hide: makeinfo ======== + +makeinfo is part of the Texinfo project, the official documentation format of the GNU project. + +https://www.gnu.org/software/texinfo/ # Available modules @@ -17,7 +21,7 @@ To start using makeinfo, load one of these modules using a `module load` command module load makeinfo/7.0.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/manta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/manta.md index 35e0b112c407..047018ebb2ad 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/manta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/manta.md @@ -6,6 +6,10 @@ hide: manta ===== + +Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads.It is optimized for analysis of germline variation in small sets of individuals andsomatic variation in tumor/normal sample pairs. Manta discovers, assembles andscores large-scale SVs, medium-sized indels and large insertions within asingle efficient workflow. + +https://github.com/Illumina/manta # Available modules @@ -17,7 +21,7 @@ To start using manta, load one of these modules using a `module load` command li module load manta/1.6.0-gompi-2020a-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mapDamage.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mapDamage.md index 915cdfbfe6c0..11c7476bee61 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mapDamage.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mapDamage.md @@ -6,6 +6,10 @@ hide: mapDamage ========= + +mapDamage2 is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms. + +https://ginolhac.github.io/mapDamage/ # Available modules @@ -17,7 +21,7 @@ To start using mapDamage, load one of these modules using a `module load` comman module load mapDamage/2.2.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/matplotlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/matplotlib.md index 68f5dea6b7b9..2880b51e8b9b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/matplotlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/matplotlib.md @@ -6,6 +6,10 @@ hide: matplotlib ========== + +matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits. + +https://matplotlib.org # Available modules @@ -17,7 +21,7 @@ To start using matplotlib, load one of these modules using a `module load` comma module load matplotlib/3.7.2-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -41,3 +45,124 @@ module load matplotlib/3.7.2-gfbf-2023a |matplotlib/2.2.5-foss-2020b-Python-2.7.18|-|x|x|x|x|x| |matplotlib/2.2.4-intel-2019b-Python-2.7.16|-|x|x|-|x|x| |matplotlib/2.2.4-foss-2019b-Python-2.7.16|-|x|x|-|x|x| + + +### matplotlib/3.7.2-gfbf-2023a + +This is a list of extensions included in the module: + +contourpy-1.1.0, Cycler-0.11.0, fonttools-4.42.0, kiwisolver-1.4.4, matplotlib-3.7.2 + +### matplotlib/3.7.0-gfbf-2022b + +This is a list of extensions included in the module: + +contourpy-1.0.7, Cycler-0.11.0, fonttools-4.38.0, kiwisolver-1.4.4, matplotlib-3.7.0 + +### matplotlib/3.5.2-intel-2022a + +This is a list of extensions included in the module: + +Cycler-0.11.0, fonttools-4.34.0, kiwisolver-1.4.3, matplotlib-3.5.2 + +### matplotlib/3.5.2-foss-2022a + +This is a list of extensions included in the module: + +Cycler-0.11.0, fonttools-4.34.0, kiwisolver-1.4.3, matplotlib-3.5.2 + +### matplotlib/3.5.2-foss-2021b + +This is a list of extensions included in the module: + +cppy-1.2.1, Cycler-0.11.0, fonttools-4.34.0, kiwisolver-1.4.3, matplotlib-3.5.2, Pillow-9.1.1, setuptools-62.1.0 + +### matplotlib/3.4.3-intel-2021b + +This is a list of extensions included in the module: + +Cycler-0.11.0, kiwisolver-1.3.2, matplotlib-3.4.3 + +### matplotlib/3.4.3-foss-2021b + +This is a list of extensions included in the module: + +Cycler-0.11.0, kiwisolver-1.3.2, matplotlib-3.4.3 + +### matplotlib/3.4.2-gomkl-2021a + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.3.1, matplotlib-3.4.2 + +### matplotlib/3.4.2-foss-2021a + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.3.1, matplotlib-3.4.2 + +### matplotlib/3.3.3-intel-2020b + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.3.0, matplotlib-3.3.3 + +### matplotlib/3.3.3-fosscuda-2020b + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.3.0, matplotlib-3.3.3 + +### matplotlib/3.3.3-foss-2020b + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.3.0, matplotlib-3.3.3 + +### matplotlib/3.2.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.2.1 + +### matplotlib/3.2.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.2.1 + +### matplotlib/3.1.1-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.1.1 + +### matplotlib/3.1.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.1.1 + +### matplotlib/2.2.5-intel-2020a-Python-2.7.18 + +This is a list of extensions included in the module: + +backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.5, subprocess32-3.5.4 + +### matplotlib/2.2.5-foss-2020b-Python-2.7.18 + +This is a list of extensions included in the module: + +backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.5, subprocess32-3.5.4 + +### matplotlib/2.2.4-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.4, subprocess32-3.5.4 + +### matplotlib/2.2.4-foss-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.4, subprocess32-3.5.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/maturin.md b/mkdocs/docs/HPC/only/gent/available_software/detail/maturin.md index ab2f3a57c4b9..57db3d2b83d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/maturin.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/maturin.md @@ -6,6 +6,10 @@ hide: maturin ======= + +This project is meant as a zero configurationreplacement for setuptools-rust and milksnake. It supports buildingwheels for python 3.5+ on windows, linux, mac and freebsd, can uploadthem to pypi and has basic pypy and graalpy support. + +https://github.com/pyo3/maturin # Available modules @@ -17,7 +21,7 @@ To start using maturin, load one of these modules using a `module load` command module load maturin/1.4.0-GCCcore-12.3.0-Rust-1.75.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mauveAligner.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mauveAligner.md index a87db59d5389..17fcbf5a328e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mauveAligner.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mauveAligner.md @@ -6,6 +6,10 @@ hide: mauveAligner ============ + +Mauve is a system for constructing multiple genome alignments in the presenceof large-scale evolutionary events such as rearrangement and inversion.Multiple genome alignments provide a basis for research into comparativegenomics and the study of genome-wide evolutionary dynamics.This version was built without Graphical User Interface. + +https://darlinglab.org/mauve/mauve.html # Available modules @@ -17,7 +21,7 @@ To start using mauveAligner, load one of these modules using a `module load` com module load mauveAligner/4736-gompi-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/maze.md b/mkdocs/docs/HPC/only/gent/available_software/detail/maze.md index b654864d6be9..e3dca7c69867 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/maze.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/maze.md @@ -6,6 +6,10 @@ hide: maze ==== + +In a similar manner to dot plots, maze highlights localsequence similarity between two DNA sequences. In particular, maximal exactsubstring matches are computed with MUMmer3 and visualised. + +https://github.com/dellytools/maze # Available modules @@ -17,7 +21,7 @@ To start using maze, load one of these modules using a `module load` command lik module load maze/20170124-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mcu.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mcu.md index e6c2ce610d7e..6b720deae246 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mcu.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mcu.md @@ -6,6 +6,10 @@ hide: mcu === + +A package for periodic wavefunction and crystallography analysis. mcu is designed to support large scale analysis and topological descriptions for periodic wavefunction. + +https://hungqpham.com/mcu/ # Available modules @@ -17,7 +21,7 @@ To start using mcu, load one of these modules using a `module load` command like module load mcu/2021-04-06-gomkl-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/medImgProc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/medImgProc.md index 4535b011a1e9..512c223804ae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/medImgProc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/medImgProc.md @@ -6,6 +6,10 @@ hide: medImgProc ========== + +Motion correction, explicit spatio-temporal regularization of motion tracking, random specklesenhancement, and segmentation. + +https://github.com/WeiXuanChan/motionSegmentation # Available modules @@ -17,8 +21,15 @@ To start using medImgProc, load one of these modules using a `module load` comma module load medImgProc/2.5.7-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |medImgProc/2.5.7-foss-2019b-Python-3.7.4|-|x|-|-|-|x| + + +### medImgProc/2.5.7-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +imageio-2.8.0, medImgProc-2.5.7, phasepack-1.5, PyWavelets-1.1.1, trimesh-3.6.15 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/medaka.md b/mkdocs/docs/HPC/only/gent/available_software/detail/medaka.md index a8a9d04eb218..89c526eca265 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/medaka.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/medaka.md @@ -6,6 +6,10 @@ hide: medaka ====== + +medaka is a tool to create a consensus sequence from nanopore sequencing data. + +https://github.com/nanoporetech/medaka # Available modules @@ -17,7 +21,7 @@ To start using medaka, load one of these modules using a `module load` command l module load medaka/1.11.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -30,3 +34,58 @@ module load medaka/1.11.3-foss-2022a |medaka/1.2.6-foss-2019b-Python-3.7.4|-|x|-|-|-|-| |medaka/1.1.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| |medaka/1.1.1-foss-2019b-Python-3.7.4|-|-|x|-|x|x| + + +### medaka/1.11.3-foss-2022a + +This is a list of extensions included in the module: + +mappy-2.24, medaka-1.11.3, pyspoa-0.2.1, wurlitzer-3.0.3 + +### medaka/1.9.1-foss-2022a + +This is a list of extensions included in the module: + +mappy-2.24, medaka-1.9.1 + +### medaka/1.8.1-foss-2022a + +This is a list of extensions included in the module: + +mappy-2.24, medaka-1.8.1 + +### medaka/1.6.0-foss-2021b + +This is a list of extensions included in the module: + +mappy-2.22, medaka-1.6.0 + +### medaka/1.4.3-foss-2020b + +This is a list of extensions included in the module: + +intervaltree-3.1.0, mappy-2.22, medaka-1.4.3, ont-fast5-api-3.3.0, parasail-1.2.4, progressbar33-2.4, sortedcontainers-2.4.0, whatshap-1.1, xopen-1.1.0 + +### medaka/1.4.3-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +intervaltree-3.1.0, isal-0.10.0, mappy-2.20, medaka-1.4.3, parasail-1.2.4, sortedcontainers-2.4.0, whatshap-1.1, xopen-1.1.0 + +### medaka/1.2.6-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +intervaltree-3.1.0, isal-0.9.0, mappy-2.17, medaka-1.2.6, ont-fast5-api-3.3.0, parasail-1.2.4, progressbar33-2.4, pyfaidx-0.5.9.5, sortedcontainers-2.3.0, whatshap-1.0, xopen-1.1.0 + +### medaka/1.1.3-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mappy-2.17, medaka-1.1.3, ont-fast5-api-3.1.6, parasail-1.2, progressbar33-2.4, pyfaidx-0.5.9.1, whatshap-1.0, xopen-0.9.0 + +### medaka/1.1.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mappy-2.17, medaka-1.1.1, ont-fast5-api-3.1.6, parasail-1.2, progressbar33-2.4, pyfaidx-0.5.9.1, whatshap-1.0, xopen-0.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/meshalyzer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/meshalyzer.md index e9b36687d746..6b5cc299a46b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/meshalyzer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/meshalyzer.md @@ -6,6 +6,10 @@ hide: meshalyzer ========== + +Graphical program for display time dependent data on 3D finite elment meshes + +https://git.opencarp.org/openCARP/meshalyzer # Available modules @@ -17,7 +21,7 @@ To start using meshalyzer, load one of these modules using a `module load` comma module load meshalyzer/20200308-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/meshtool.md b/mkdocs/docs/HPC/only/gent/available_software/detail/meshtool.md index 0171b8675c05..ecd988506b69 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/meshtool.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/meshtool.md @@ -6,6 +6,10 @@ hide: meshtool ======== + +Meshtool is a comand-line tool written in C++. It is designed to apply various manipulations tovolumetric meshes. + +https://bitbucket.org/aneic/meshtool # Available modules @@ -17,7 +21,7 @@ To start using meshtool, load one of these modules using a `module load` command module load meshtool/16-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/meson-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/meson-python.md index d3b7205630c7..6c10b229749f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/meson-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/meson-python.md @@ -6,6 +6,10 @@ hide: meson-python ============ + +Python build backend (PEP 517) for Meson projects + +https://github.com/mesonbuild/meson-python # Available modules @@ -17,9 +21,22 @@ To start using meson-python, load one of these modules using a `module load` com module load meson-python/0.15.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |meson-python/0.15.0-GCCcore-13.2.0|x|x|x|x|x|x| |meson-python/0.13.2-GCCcore-12.3.0|x|x|x|x|x|x| + + +### meson-python/0.15.0-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +meson-python-0.15.0, pyproject-metadata-0.7.1 + +### meson-python/0.13.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +meson-python-0.13.2, pyproject-metadata-0.7.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/metaWRAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/metaWRAP.md index 99666470ded0..69ab79060474 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/metaWRAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/metaWRAP.md @@ -6,6 +6,10 @@ hide: metaWRAP ======== + +MetaWRAP aims to be an easy-to-use metagenomic wrapper suitethat accomplishes the core tasks of metagenomic analysis from start to finish:read quality control, assembly, visualization, taxonomic profiling, extractingdraft genomes (binning), and functional annotation. + +https://github.com/bxlab/metaWRAP # Available modules @@ -17,7 +21,7 @@ To start using metaWRAP, load one of these modules using a `module load` command module load metaWRAP/1.3-foss-2020b-Python-2.7.18 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/metaerg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/metaerg.md index 8836b22f147e..6b57929df6b4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/metaerg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/metaerg.md @@ -6,6 +6,10 @@ hide: metaerg ======= + +MetaErg is a stand-alone and fully automated metagenomic and metaproteomic data annotation pipeline. + +https://github.com/xiaoli-dong/metaerg # Available modules @@ -17,7 +21,7 @@ To start using metaerg, load one of these modules using a `module load` command module load metaerg/1.2.3-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/methylpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/methylpy.md index 753d179414e9..6412ff5d956d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/methylpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/methylpy.md @@ -6,6 +6,10 @@ hide: methylpy ======== + +Bisulfite sequencing data processing and differential methylation analysis. + +https://pypi.python.org/pypi/methylpy # Available modules @@ -17,7 +21,7 @@ To start using methylpy, load one of these modules using a `module load` command module load methylpy/1.2.9-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mgen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mgen.md index 8d19709f78a5..22c61a2a738e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mgen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mgen.md @@ -6,6 +6,10 @@ hide: mgen ==== + +Convenient matrix generation functions + +https://github.com/NOhs/mgen/tree/master # Available modules @@ -17,7 +21,7 @@ To start using mgen, load one of these modules using a `module load` command lik module load mgen/1.2.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mgltools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mgltools.md index 17ad9b842cae..cc402cd8342f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mgltools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mgltools.md @@ -6,6 +6,10 @@ hide: mgltools ======== + +The MGLTools software suite can be used for visualization and analysis of molecular structures and comprises the Python Molecular Viewer (PMV, a general purpose molecular viewer), AutoDockTools (ADT, a set of PMV commands specifically developed to support AutoDock users) and Vision (a visual programming environment). + +https://ccsb.scripps.edu/mgltools/ # Available modules @@ -17,7 +21,7 @@ To start using mgltools, load one of these modules using a `module load` command module load mgltools/1.5.7 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mhcnuggets.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mhcnuggets.md index 1b6a969c0db0..7268828ef697 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mhcnuggets.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mhcnuggets.md @@ -6,6 +6,10 @@ hide: mhcnuggets ========== + +MHCnuggets: Neoantigen peptide MHC binding prediction for class I and II. + +https://github.com/KarchinLab/mhcnuggets # Available modules @@ -17,7 +21,7 @@ To start using mhcnuggets, load one of these modules using a `module load` comma module load mhcnuggets/2.3-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/microctools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/microctools.md index 959c5d494963..0111809a0d4d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/microctools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/microctools.md @@ -6,6 +6,10 @@ hide: microctools =========== + +Various worker functions for microclimc package + +https://github.com/ilyamaclean/microctools # Available modules @@ -17,7 +21,7 @@ To start using microctools, load one of these modules using a `module load` comm module load microctools/0.1.0-20201209-foss-2020b-R-4.0.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/minibar.md b/mkdocs/docs/HPC/only/gent/available_software/detail/minibar.md index b8adddfc8397..5edd07219d69 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/minibar.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/minibar.md @@ -6,6 +6,10 @@ hide: minibar ======= + +Dual barcode and primer demultiplexing for MinION sequenced reads + +https://github.com/calacademy-research/minibar # Available modules @@ -17,7 +21,7 @@ To start using minibar, load one of these modules using a `module load` command module load minibar/20200326-iccifort-2020.1.217-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md index e4ac79d60856..1130050305c8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md @@ -6,6 +6,10 @@ hide: minimap2 ======== + +Minimap2 is a fast sequence mapping and alignmentprogram that can find overlaps between long noisy reads, or map longreads or their assemblies to a reference genome optionally with detailedalignment (i.e. CIGAR). At present, it works efficiently with querysequences from a few kilobases to ~100 megabases in length at an errorrate ~15%. Minimap2 outputs in the PAF or the SAM format. On limitedtest data sets, minimap2 is over 20 times faster than most otherlong-read aligners. It will replace BWA-MEM for long reads and contigalignment. + +https://github.com/lh3/minimap2 # Available modules @@ -17,7 +21,7 @@ To start using minimap2, load one of these modules using a `module load` command module load minimap2/2.26-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/minizip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/minizip.md index 6fd8df6c78df..d001149c0dea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/minizip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/minizip.md @@ -6,6 +6,10 @@ hide: minizip ======= + +Mini zip and unzip based on zlib + +https://www.winimage.com/zLibDll/minizip.html # Available modules @@ -17,7 +21,7 @@ To start using minizip, load one of these modules using a `module load` command module load minizip/1.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/misha.md b/mkdocs/docs/HPC/only/gent/available_software/detail/misha.md index 2a94dcfab083..fa4e05c6a59a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/misha.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/misha.md @@ -6,6 +6,10 @@ hide: misha ===== + +The misha package is intended to help users to efficiently analyze genomic data achieved from various experiments. + +https://github.com/tanaylab/misha # Available modules @@ -17,7 +21,7 @@ To start using misha, load one of these modules using a `module load` command li module load misha/4.0.10-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mkl-service.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mkl-service.md index 5aa864793904..d2e9270d0e26 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mkl-service.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mkl-service.md @@ -6,6 +6,10 @@ hide: mkl-service =========== + +Python hooks for Intel(R) Math Kernel Library runtime control settings. + +https://github.com/IntelPython/mkl-service # Available modules @@ -17,7 +21,7 @@ To start using mkl-service, load one of these modules using a `module load` comm module load mkl-service/2.3.0-intel-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mm-common.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mm-common.md index 6be66eb2ce01..38359a398a97 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mm-common.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mm-common.md @@ -6,6 +6,10 @@ hide: mm-common ========= + +The mm-common module provides the build infrastructure and utilities shared among the GNOME C++ binding libraries. + +https://gitlab.gnome.org/GNOME/mm-common # Available modules @@ -17,7 +21,7 @@ To start using mm-common, load one of these modules using a `module load` comman module load mm-common/1.0.4-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/molmod.md b/mkdocs/docs/HPC/only/gent/available_software/detail/molmod.md index 81dfe95e156e..e4e4670e5c35 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/molmod.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/molmod.md @@ -6,6 +6,10 @@ hide: molmod ====== + +MolMod is a Python library with many compoments that are useful to write molecular modeling programs. + +https://molmod.github.io/molmod/ # Available modules @@ -17,7 +21,7 @@ To start using molmod, load one of these modules using a `module load` command l module load molmod/1.4.5-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mongolite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mongolite.md index 89de76e259f2..1f72b6beca80 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mongolite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mongolite.md @@ -6,6 +6,10 @@ hide: mongolite ========= + +High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'. Includes support for aggregation, indexing, map-reduce, streaming, encryption, enterprise authentication, and GridFS. The online user manual provides an overview of the available methods in the package: . + +https://cran.r-project.org/web/packages/mongolite # Available modules @@ -17,7 +21,7 @@ To start using mongolite, load one of these modules using a `module load` comman module load mongolite/2.3.0-foss-2020b-R-4.0.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/monitor.md b/mkdocs/docs/HPC/only/gent/available_software/detail/monitor.md index 72eedb8a5eb4..d3df5ab0b01d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/monitor.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/monitor.md @@ -6,6 +6,10 @@ hide: monitor ======= + +monitor logs cpu and memory usage of a running application + +https://github.com/gjbex/monitor # Available modules @@ -17,8 +21,15 @@ To start using monitor, load one of these modules using a `module load` command module load monitor/1.1.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |monitor/1.1.2|-|x|x|-|x|-| + + +### monitor/1.1.2 + +This is a list of extensions included in the module: + +Data::Dumper-2.183, Getopt::Long-2.52, IO-1.48, List::Util-1.60, Set::Scalar-1.29 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mosdepth.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mosdepth.md index 72567c17e1b7..fcdb039f5f11 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mosdepth.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mosdepth.md @@ -6,6 +6,10 @@ hide: mosdepth ======== + +Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing + +https://github.com/brentp/mosdepth # Available modules @@ -17,7 +21,7 @@ To start using mosdepth, load one of these modules using a `module load` command module load mosdepth/0.3.3-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/motionSegmentation.md b/mkdocs/docs/HPC/only/gent/available_software/detail/motionSegmentation.md index ddf5040d9c8c..7a842af6903e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/motionSegmentation.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/motionSegmentation.md @@ -6,6 +6,10 @@ hide: motionSegmentation ================== + +Motion correction, explicit spatio-temporal regularization of motion tracking, random specklesenhancement, and segmentation. + +https://github.com/WeiXuanChan/motionSegmentation # Available modules @@ -17,8 +21,15 @@ To start using motionSegmentation, load one of these modules using a `module loa module load motionSegmentation/2.7.9-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |motionSegmentation/2.7.9-foss-2019b-Python-3.7.4|-|x|-|-|-|x| + + +### motionSegmentation/2.7.9-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +autoD-3.9.2, imageio-2.8.0, motionSegmentation-2.7.9, trimesh-3.6.15 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mpath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mpath.md index 172f604fdc9a..a8569fadb051 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mpath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mpath.md @@ -6,6 +6,10 @@ hide: mpath ===== + +For now it's quit simple and get_path_info()method returns information about given path. It can be eithera directory or a file path. + +https://pypi.org/project/mpath/ # Available modules @@ -17,8 +21,15 @@ To start using mpath, load one of these modules using a `module load` command li module load mpath/1.1.3-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |mpath/1.1.3-GCCcore-11.3.0|x|x|x|x|x|x| + + +### mpath/1.1.3-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +mclass-1.3.4, mpath-1.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mpi4py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mpi4py.md index 0602a2eaaca7..4429a6b833d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mpi4py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mpi4py.md @@ -6,6 +6,10 @@ hide: mpi4py ====== + +MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. + +https://github.com/mpi4py/mpi4py # Available modules @@ -17,9 +21,22 @@ To start using mpi4py, load one of these modules using a `module load` command l module load mpi4py/3.1.4-gompi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |mpi4py/3.1.4-gompi-2023a|x|x|x|x|x|x| |mpi4py/3.1.4-gompi-2022b|x|x|x|x|x|x| + + +### mpi4py/3.1.4-gompi-2023a + +This is a list of extensions included in the module: + +mpi4py-3.1.4 + +### mpi4py/3.1.4-gompi-2022b + +This is a list of extensions included in the module: + +mpi4py-3.1.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mrcfile.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mrcfile.md index 2b17ed1735b3..840e42cf26e0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mrcfile.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mrcfile.md @@ -6,6 +6,10 @@ hide: mrcfile ======= + +mrcfile is a Python implementation of the MRC2014 file format, which is used in structural biology to store image and volume data.It allows MRC files to be created and opened easily using a very simple API, which exposes the file’s header and data as numpy arrays. The code runs in Python 2 and 3 and is fully unit-tested.This library aims to allow users and developers to read and write standard-compliant MRC files in Python as easily as possible, and with no dependencies onany compiled libraries except numpy. You can use it interactively to inspect files, correct headers and so on, or in scripts and larger software packages to provide basic MRC file I/O functions. + +https://github.com/ccpem/mrcfile # Available modules @@ -17,7 +21,7 @@ To start using mrcfile, load one of these modules using a `module load` command module load mrcfile/1.3.0-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/muParser.md b/mkdocs/docs/HPC/only/gent/available_software/detail/muParser.md index c3d3ac947a04..5ffa9c2774ad 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/muParser.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/muParser.md @@ -6,6 +6,10 @@ hide: muParser ======== + +muParser is an extensible high performance math expression parser library written in C++. It works by transforming a mathematical expression into bytecode and precalculating constant parts of the expression. + +https://beltoforion.de/article.php?a=muparser # Available modules @@ -17,7 +21,7 @@ To start using muParser, load one of these modules using a `module load` command module load muParser/2.3.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mujoco-py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mujoco-py.md index 665bb2b005e8..21e65319caa9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mujoco-py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mujoco-py.md @@ -6,6 +6,10 @@ hide: mujoco-py ========= + +MuJoCo Python Bindings + +https://github.com/deepmind/mujoco # Available modules @@ -17,9 +21,22 @@ To start using mujoco-py, load one of these modules using a `module load` comman module load mujoco-py/2.3.7-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |mujoco-py/2.3.7-foss-2023a|x|x|x|x|x|x| |mujoco-py/2.1.2.14-foss-2021b|x|x|x|x|x|x| + + +### mujoco-py/2.3.7-foss-2023a + +This is a list of extensions included in the module: + +absl-py-1.4.0, glfw-2.6.2, mujoco-2.3.7 + +### mujoco-py/2.1.2.14-foss-2021b + +This is a list of extensions included in the module: + +fasteners-0.17.2, glfw-2.5.0, mujoco-py-2.1.2.14 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/multichoose.md b/mkdocs/docs/HPC/only/gent/available_software/detail/multichoose.md index 7c4c3ec61a92..d6462920404d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/multichoose.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/multichoose.md @@ -6,6 +6,10 @@ hide: multichoose =========== + +generate multiset combinations (n multichoose k). + +https://github.com/ekg/multichoose # Available modules @@ -17,7 +21,7 @@ To start using multichoose, load one of these modules using a `module load` comm module load multichoose/1.0.3-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mygene.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mygene.md index d3a3f16da97b..136ddfb14564 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mygene.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mygene.md @@ -6,6 +6,10 @@ hide: mygene ====== + +Python Client for MyGene.Info services. + +https://github.com/biothings/mygene.py # Available modules @@ -17,9 +21,22 @@ To start using mygene, load one of these modules using a `module load` command l module load mygene/3.2.2-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |mygene/3.2.2-foss-2022b|x|x|x|x|x|x| |mygene/3.2.2-foss-2022a|x|x|x|x|x|x| + + +### mygene/3.2.2-foss-2022b + +This is a list of extensions included in the module: + +biothings_client-0.3.1, mygene-3.2.2 + +### mygene/3.2.2-foss-2022a + +This is a list of extensions included in the module: + +biothings_client-0.2.6, mygene-3.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mysqlclient.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mysqlclient.md index 62a00f61be59..61eaff4af658 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mysqlclient.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mysqlclient.md @@ -6,6 +6,10 @@ hide: mysqlclient =========== + +Python interface to MySQL + +https://github.com/PyMySQL/mysqlclient-python # Available modules @@ -17,7 +21,7 @@ To start using mysqlclient, load one of these modules using a `module load` comm module load mysqlclient/2.1.1-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/n2v.md b/mkdocs/docs/HPC/only/gent/available_software/detail/n2v.md index 43b6076cc530..6435ea7a1d66 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/n2v.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/n2v.md @@ -6,6 +6,10 @@ hide: n2v === + +Learning Denoising from Single Noisy Images + +https://github.com/juglab/n2v # Available modules @@ -17,9 +21,22 @@ To start using n2v, load one of these modules using a `module load` command like module load n2v/0.3.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |n2v/0.3.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |n2v/0.3.2-foss-2022a|x|x|x|x|x|x| + + +### n2v/0.3.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +n2v-0.3.2 + +### n2v/0.3.2-foss-2022a + +This is a list of extensions included in the module: + +n2v-0.3.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nanocompore.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nanocompore.md index 09f34ddc3125..045dfd864199 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nanocompore.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nanocompore.md @@ -6,6 +6,10 @@ hide: nanocompore =========== + +Nanocompore identifies differences in ONT nanopore sequencing raw signal corresponding to RNA modifications by comparing 2 samples + +https://nanocompore.rna.rocks/ # Available modules @@ -17,8 +21,15 @@ To start using nanocompore, load one of these modules using a `module load` comm module load nanocompore/1.0.0rc3-2-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |nanocompore/1.0.0rc3-2-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### nanocompore/1.0.0rc3-2-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +bedparse-0.2.3, nanocompore-1.0.0rc3-2, pyfaidx-0.5.9.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nanofilt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nanofilt.md index a720052cf913..9cde06722063 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nanofilt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nanofilt.md @@ -6,6 +6,10 @@ hide: nanofilt ======== + +Filtering and trimming of long read sequencing data. + +https://github.com/wdecoster/nanofilt # Available modules @@ -17,7 +21,7 @@ To start using nanofilt, load one of these modules using a `module load` command module load nanofilt/2.6.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nanoget.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nanoget.md index 93375510d17b..d823fdc78dc5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nanoget.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nanoget.md @@ -6,6 +6,10 @@ hide: nanoget ======= + +Functions to extract information from Oxford Nanopore sequencing data and alignments + +https://github.com/wdecoster/nanoget # Available modules @@ -17,7 +21,7 @@ To start using nanoget, load one of these modules using a `module load` command module load nanoget/1.18.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nanomath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nanomath.md index aa2e0a347ea2..4962d31b7555 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nanomath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nanomath.md @@ -6,6 +6,10 @@ hide: nanomath ======== + +A few simple math function for other Oxford Nanopore processing scripts + +https://github.com/wdecoster/nanomath # Available modules @@ -17,7 +21,7 @@ To start using nanomath, load one of these modules using a `module load` command module load nanomath/1.3.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,22 @@ module load nanomath/1.3.0-foss-2022a |nanomath/1.2.1-foss-2021a|x|x|x|x|x|x| |nanomath/1.2.0-intel-2020b|-|x|x|-|x|x| |nanomath/0.23.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### nanomath/1.3.0-foss-2022a + +This is a list of extensions included in the module: + +nanomath-1.3.0, Python-Deprecated-1.1.0 + +### nanomath/1.2.1-foss-2021a + +This is a list of extensions included in the module: + +nanomath-1.2.1, Python-Deprecated-1.1.0 + +### nanomath/1.2.0-intel-2020b + +This is a list of extensions included in the module: + +nanomath-1.2.0, Python-Deprecated-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nanopolish.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nanopolish.md index c29a164598c4..fbdf43ebae23 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nanopolish.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nanopolish.md @@ -6,6 +6,10 @@ hide: nanopolish ========== + +Software package for signal-level analysis of Oxford Nanopore sequencing data. + +https://github.com/jts/nanopolish # Available modules @@ -17,7 +21,7 @@ To start using nanopolish, load one of these modules using a `module load` comma module load nanopolish/0.14.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/napari.md b/mkdocs/docs/HPC/only/gent/available_software/detail/napari.md index 1f43fbcb3cd8..4827d33973fe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/napari.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/napari.md @@ -6,6 +6,10 @@ hide: napari ====== + +napari is a fast, interactive, multi-dimensional image viewer for Python. It's designed for browsing, annotating, and analyzing large multi-dimensional images.It's built on top of Qt (for the GUI), vispy (for performant GPU-based rendering), and the scientific Python stack (numpy, scipy). + +https://napari.org/ # Available modules @@ -17,9 +21,22 @@ To start using napari, load one of these modules using a `module load` command l module load napari/0.4.18-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |napari/0.4.18-foss-2022a|x|x|x|x|x|x| |napari/0.4.15-foss-2021b|x|x|x|-|x|x| + + +### napari/0.4.18-foss-2022a + +This is a list of extensions included in the module: + +app-model-0.1.1, build-0.10.0, cachey-0.2.1, docstring_parser-0.15, in_n_out-0.1.8, lazy_loader-0.3, magicgui-0.6.1, markdown-it-py-2.1.0, mdurl-0.1.2, mypy_extensions-1.0.0, napari-0.4.18, napari-console-0.0.8, napari-plugin-engine-0.2.0, napari-svg-0.1.10, npe2-0.7.2, numpydoc-1.5.0, psygnal-0.9.2, pyproject_hooks-1.0.0, rich-13.2.0, superqt-0.5.0, tornado-6.1, typer-0.7.0 + +### napari/0.4.15-foss-2021b + +This is a list of extensions included in the module: + +beniget-0.4.1, build-0.8.0, cachey-0.2.1, docstring-parser-0.14.1, freetype_py-2.3.0, gast-0.5.3, hsluv-5.0.3, magicgui-0.5.1, napari-0.4.15, napari-console-0.0.4, napari-plugin-engine-0.2.0, napari-svg-0.1.6, npe2-0.5.0, numpydoc-1.4.0, pep517-0.12.0, Pint-0.19.2, ply-3.11, psygnal-0.3.5, pydantic-1.9.1, pythran-0.10.0, pytomlpp-1.0.10, superqt-0.3.2, tifffile-2022.5.4, tomli-2.0.1, typer-0.4.1, vispy-0.10.0, wrapt-1.12.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ncbi-vdb.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ncbi-vdb.md index b0ebcb981dad..7730ab3e7aa8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ncbi-vdb.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ncbi-vdb.md @@ -6,6 +6,10 @@ hide: ncbi-vdb ======== + +The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. + +https://github.com/ncbi/ncbi-vdb # Available modules @@ -17,7 +21,7 @@ To start using ncbi-vdb, load one of these modules using a `module load` command module load ncbi-vdb/3.0.2-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ncdf4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ncdf4.md index 10b1bcdae20a..a03573cfdf22 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ncdf4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ncdf4.md @@ -6,6 +6,10 @@ hide: ncdf4 ===== + +ncdf4: Interface to Unidata netCDF (version 4 or earlier) format data files + +https://cran.r-project.org/web/packages/ncdf4 # Available modules @@ -17,7 +21,7 @@ To start using ncdf4, load one of these modules using a `module load` command li module load ncdf4/1.17-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ncolor.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ncolor.md index c78a6be1a8e9..4a8a4e6ecb83 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ncolor.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ncolor.md @@ -6,6 +6,10 @@ hide: ncolor ====== + +Fast remapping of instance labels 1,2,3,...,M toa smaller set of repeating, disjoint labels, 1,2,...,N. + +https://github.com/kevinjohncutler/ncolor # Available modules @@ -17,8 +21,15 @@ To start using ncolor, load one of these modules using a `module load` command l module load ncolor/1.2.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |ncolor/1.2.1-foss-2022a|x|x|x|x|x|x| + + +### ncolor/1.2.1-foss-2022a + +This is a list of extensions included in the module: + +edt-2.3.1, fastremap-1.13.5, ncolor-1.2.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ncurses.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ncurses.md index cc2b7c75decb..857f19fd0805 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ncurses.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ncurses.md @@ -6,6 +6,10 @@ hide: ncurses ======= + +The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. + +http://www.gnu.org/software/ncurses/ # Available modules @@ -17,7 +21,7 @@ To start using ncurses, load one of these modules using a `module load` command module load ncurses/6.4-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ncview.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ncview.md index 8717508df141..d7038657573f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ncview.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ncview.md @@ -6,6 +6,10 @@ hide: ncview ====== + +Ncview is a visual browser for netCDF format files.Typically you would use ncview to get a quick and easy, push-buttonlook at your netCDF files. You can view simple movies of the data,view along various dimensions, take a look at the actual data values,change color maps, invert the data, etc. + +http://meteora.ucsd.edu/~pierce/ncview_home_page.html # Available modules @@ -17,7 +21,7 @@ To start using ncview, load one of these modules using a `module load` command l module load ncview/2.1.7-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-C++4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-C++4.md index 090762c0b2c0..520a2f96791f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-C++4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-C++4.md @@ -6,6 +6,10 @@ hide: netCDF-C++4 =========== + +NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. + +https://www.unidata.ucar.edu/software/netcdf/ # Available modules @@ -17,7 +21,7 @@ To start using netCDF-C++4, load one of these modules using a `module load` comm module load netCDF-C++4/4.3.1-iimpi-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-Fortran.md b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-Fortran.md index 4368c92aa543..abd94c1381a1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-Fortran.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-Fortran.md @@ -6,6 +6,10 @@ hide: netCDF-Fortran ============== + +NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. + +https://www.unidata.ucar.edu/software/netcdf/ # Available modules @@ -17,7 +21,7 @@ To start using netCDF-Fortran, load one of these modules using a `module load` c module load netCDF-Fortran/4.6.0-iimpi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF.md index 440620861acd..8913afd3250d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF.md @@ -6,6 +6,10 @@ hide: netCDF ====== + +NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. + +https://www.unidata.ucar.edu/software/netcdf/ # Available modules @@ -17,7 +21,7 @@ To start using netCDF, load one of these modules using a `module load` command l module load netCDF/4.9.2-gompi-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/netcdf4-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/netcdf4-python.md index 7f961f3e52ee..75605bdc6a20 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/netcdf4-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/netcdf4-python.md @@ -6,6 +6,10 @@ hide: netcdf4-python ============== + +Python/numpy interface to netCDF. + +https://unidata.github.io/netcdf4-python/ # Available modules @@ -17,7 +21,7 @@ To start using netcdf4-python, load one of these modules using a `module load` c module load netcdf4-python/1.6.4-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -32,3 +36,70 @@ module load netcdf4-python/1.6.4-foss-2023a |netcdf4-python/1.5.3-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |netcdf4-python/1.5.3-foss-2020a-Python-3.8.2|-|x|x|-|x|x| |netcdf4-python/1.5.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### netcdf4-python/1.6.4-foss-2023a + +This is a list of extensions included in the module: + +cftime-1.6.2, netcdf4-python-1.6.4 + +### netcdf4-python/1.6.1-foss-2022a + +This is a list of extensions included in the module: + +cftime-1.6.2, netcdf4-python-1.6.1 + +### netcdf4-python/1.5.7-intel-2021b + +This is a list of extensions included in the module: + +cftime-1.5.0, netcdf4-python-1.5.7 + +### netcdf4-python/1.5.7-foss-2021b + +This is a list of extensions included in the module: + +cftime-1.5.0, netcdf4-python-1.5.7 + +### netcdf4-python/1.5.7-foss-2021a + +This is a list of extensions included in the module: + +cftime-1.5.0, netcdf4-python-1.5.7 + +### netcdf4-python/1.5.5.1-intel-2020b + +This is a list of extensions included in the module: + +cftime-1.2.0, netcdf4-python-1.5.5.1 + +### netcdf4-python/1.5.5.1-fosscuda-2020b + +This is a list of extensions included in the module: + +cftime-1.4.1, netcdf4-python-1.5.5.1 + +### netcdf4-python/1.5.3-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +cftime-1.2.0, netcdf4-python-1.5.3 + +### netcdf4-python/1.5.3-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cftime-1.1.1.2, netcdf4-python-1.5.3 + +### netcdf4-python/1.5.3-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +cftime-1.2.0, netcdf4-python-1.5.3 + +### netcdf4-python/1.5.3-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cftime-1.1.1.2, netcdf4-python-1.5.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nettle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nettle.md index 42824ddf480b..4ffb53a69d30 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nettle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nettle.md @@ -6,6 +6,10 @@ hide: nettle ====== + +Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space. + +https://www.lysator.liu.se/~nisse/nettle/ # Available modules @@ -17,7 +21,7 @@ To start using nettle, load one of these modules using a `module load` command l module load nettle/3.9.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/networkx.md b/mkdocs/docs/HPC/only/gent/available_software/detail/networkx.md index 655a4605d90a..6bab62108cca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/networkx.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/networkx.md @@ -6,6 +6,10 @@ hide: networkx ======== + +NetworkX is a Python package for the creation, manipulation,and study of the structure, dynamics, and functions of complex networks. + +https://pypi.python.org/pypi/networkx # Available modules @@ -17,7 +21,7 @@ To start using networkx, load one of these modules using a `module load` command module load networkx/3.1-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp2.md index f41900e9b6db..c97a4363b21c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp2.md @@ -6,6 +6,10 @@ hide: nghttp2 ======= + +This is an implementation of the Hypertext Transfer Protocol version 2 in C.The framing layer of HTTP/2 is implemented as a reusable C library. On top of that, we have implemented an HTTP/2 client, server and proxy. We have also developed load test and benchmarking tools for HTTP/2.An HPACK encoder and decoder are available as a public API. + +https://github.com/nghttp2/nghttp2 # Available modules @@ -17,7 +21,7 @@ To start using nghttp2, load one of these modules using a `module load` command module load nghttp2/1.48.0-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp3.md index 766ffcca061f..380d97e74c2b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp3.md @@ -6,6 +6,10 @@ hide: nghttp3 ======= + +nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 QPACK in C.It does not depend on any particular QUIC transport implementation. + +https://github.com/ngtcp2/nghttp3 # Available modules @@ -17,7 +21,7 @@ To start using nghttp3, load one of these modules using a `module load` command module load nghttp3/0.6.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nglview.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nglview.md index ff634657722d..6078243d89a4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nglview.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nglview.md @@ -6,6 +6,10 @@ hide: nglview ======= + +IPython widget to interactively view molecular structures and trajectories. + +https://github.com/arose/nglview # Available modules @@ -17,8 +21,15 @@ To start using nglview, load one of these modules using a `module load` command module load nglview/2.7.7-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |nglview/2.7.7-intel-2020a-Python-3.8.2|x|x|x|x|x|x| + + +### nglview/2.7.7-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +nglview-2.7.7, widgetsnbextension-3.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ngtcp2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ngtcp2.md index d730b31b702e..581b351bcc2f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ngtcp2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ngtcp2.md @@ -6,6 +6,10 @@ hide: ngtcp2 ====== + +'Call it TCP/2. One More Time.'ngtcp2 project is an effort to implement RFC9000 QUIC protocol. + +https://github.com/ngtcp2/ngtcp2 # Available modules @@ -17,7 +21,7 @@ To start using ngtcp2, load one of these modules using a `module load` command l module load ngtcp2/0.7.0-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nichenetr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nichenetr.md index 3df57a454a33..a8574a3e557c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nichenetr.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nichenetr.md @@ -6,6 +6,10 @@ hide: nichenetr ========= + +R implementation of the NicheNet method, to predict active ligand-target links between interacting cells + +https://github.com/saeyslab/nichenetr # Available modules @@ -17,7 +21,7 @@ To start using nichenetr, load one of these modules using a `module load` comman module load nichenetr/2.0.4-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nlohmann_json.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nlohmann_json.md index c8c1ec519cb8..179e6db63791 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nlohmann_json.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nlohmann_json.md @@ -6,6 +6,10 @@ hide: nlohmann_json ============= + +JSON for Modern C++ + +https://github.com/nlohmann/json # Available modules @@ -17,7 +21,7 @@ To start using nlohmann_json, load one of these modules using a `module load` co module load nlohmann_json/3.11.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nnU-Net.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nnU-Net.md index 14032bdf0a01..4f4743bf638f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nnU-Net.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nnU-Net.md @@ -6,6 +6,10 @@ hide: nnU-Net ======= + +nnU-Net is the first segmentation method that is designed to deal with the dataset diversity found in the domain It condenses and automates the keys decisions for designing a successful segmentation pipeline for any given dataset. + +https://github.com/MIC-DKFZ/nnUNet # Available modules @@ -17,9 +21,22 @@ To start using nnU-Net, load one of these modules using a `module load` command module load nnU-Net/1.7.0-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |nnU-Net/1.7.0-fosscuda-2020b|x|-|-|-|x|-| |nnU-Net/1.7.0-foss-2020b|-|x|x|x|x|x| + + +### nnU-Net/1.7.0-fosscuda-2020b + +This is a list of extensions included in the module: + +batchgenerators-0.23, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, immutabledict-2.1.0, linecache2-1.0.0, ml_collections-0.1.0, nnunet-1.7.0, tifffile-2021.8.30, traceback2-1.4.0, unittest2-1.1.0 + +### nnU-Net/1.7.0-foss-2020b + +This is a list of extensions included in the module: + +batchgenerators-0.23, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, immutabledict-2.1.0, linecache2-1.0.0, ml_collections-0.1.0, nnunet-1.7.0, tifffile-2021.8.30, traceback2-1.4.0, unittest2-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nodejs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nodejs.md index 355518c2698e..b1502472017b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nodejs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nodejs.md @@ -6,6 +6,10 @@ hide: nodejs ====== + +Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices. + +https://nodejs.org # Available modules @@ -17,7 +21,7 @@ To start using nodejs, load one of these modules using a `module load` command l module load nodejs/18.17.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/noise.md b/mkdocs/docs/HPC/only/gent/available_software/detail/noise.md index e9036ee2b6ba..7916e66754ed 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/noise.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/noise.md @@ -6,6 +6,10 @@ hide: noise ===== + +Native-code and shader implementations of Perlin noise for Python + +https://github.com/caseman/noise # Available modules @@ -17,8 +21,15 @@ To start using noise, load one of these modules using a `module load` command li module load noise/1.2.2-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |noise/1.2.2-gfbf-2023a|x|x|x|x|x|x| + + +### noise/1.2.2-gfbf-2023a + +This is a list of extensions included in the module: + +noise-1.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nsync.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nsync.md index b7d9eeaabb32..63ecdd8fe3d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nsync.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nsync.md @@ -6,6 +6,10 @@ hide: nsync ===== + +nsync is a C library that exports various synchronization primitives, such as mutexes + +https://github.com/google/nsync # Available modules @@ -17,7 +21,7 @@ To start using nsync, load one of these modules using a `module load` command li module load nsync/1.26.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ntCard.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ntCard.md index 1ba0ff73f6b0..daae91e8b915 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ntCard.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ntCard.md @@ -6,6 +6,10 @@ hide: ntCard ====== + +ntCard is a streaming algorithm for estimating the frequencies of k-mers in genomics datasets. + +https://www.bcgsc.ca/resources/software/ntcard # Available modules @@ -17,7 +21,7 @@ To start using ntCard, load one of these modules using a `module load` command l module load ntCard/1.2.2-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/num2words.md b/mkdocs/docs/HPC/only/gent/available_software/detail/num2words.md index 284431e424f9..732a0d30841e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/num2words.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/num2words.md @@ -6,6 +6,10 @@ hide: num2words ========= + +Modules to convert numbers to words. 42 --> forty-two + +https://github.com/savoirfairelinux/num2words # Available modules @@ -17,7 +21,7 @@ To start using num2words, load one of these modules using a `module load` comman module load num2words/0.5.10-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/numactl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/numactl.md index b8a9cc454e9b..0e8520e31f12 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/numactl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/numactl.md @@ -6,6 +6,10 @@ hide: numactl ======= + +The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. + +https://github.com/numactl/numactl # Available modules @@ -17,7 +21,7 @@ To start using numactl, load one of these modules using a `module load` command module load numactl/2.0.16-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/numba.md b/mkdocs/docs/HPC/only/gent/available_software/detail/numba.md index dab8b7b5120c..c6e9be798fb3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/numba.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/numba.md @@ -6,6 +6,10 @@ hide: numba ===== + +Numba is an Open Source NumPy-aware optimizing compiler forPython sponsored by Continuum Analytics, Inc. It uses the remarkable LLVMcompiler infrastructure to compile Python syntax to machine code. + +https://numba.pydata.org/ # Available modules @@ -17,7 +21,7 @@ To start using numba, load one of these modules using a `module load` command li module load numba/0.58.1-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -37,3 +41,100 @@ module load numba/0.58.1-foss-2023a |numba/0.50.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| |numba/0.50.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| |numba/0.47.0-foss-2019b-Python-3.7.4|x|x|x|-|x|x| + + +### numba/0.58.1-foss-2023a + +This is a list of extensions included in the module: + +llvmlite-0.41.1, numba-0.58.1 + +### numba/0.58.1-foss-2022b + +This is a list of extensions included in the module: + +llvmlite-0.41.1, numba-0.58.1 + +### numba/0.56.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +llvmlite-0.39.1, numba-0.56.4 + +### numba/0.56.4-foss-2022a + +This is a list of extensions included in the module: + +llvmlite-0.39.1, numba-0.56.4 + +### numba/0.54.1-intel-2021b + +This is a list of extensions included in the module: + +llvmlite-0.37.0, numba-0.54.1 + +### numba/0.54.1-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +llvmlite-0.37.0, numba-0.54.1 + +### numba/0.54.1-foss-2021b + +This is a list of extensions included in the module: + +llvmlite-0.37.0, numba-0.54.1 + +### numba/0.53.1-fosscuda-2020b + +This is a list of extensions included in the module: + +llvmlite-0.36.0, numba-0.53.1 + +### numba/0.53.1-foss-2021a + +This is a list of extensions included in the module: + +llvmlite-0.36.0, numba-0.53.1 + +### numba/0.53.1-foss-2020b + +This is a list of extensions included in the module: + +llvmlite-0.36.0, numba-0.53.1 + +### numba/0.52.0-intel-2020b + +This is a list of extensions included in the module: + +llvmlite-0.35.0, numba-0.52.0 + +### numba/0.52.0-fosscuda-2020b + +This is a list of extensions included in the module: + +llvmlite-0.35.0, numba-0.52.0 + +### numba/0.52.0-foss-2020b + +This is a list of extensions included in the module: + +llvmlite-0.35.0, numba-0.52.0 + +### numba/0.50.0-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +llvmlite-0.33.0, numba-0.50.0 + +### numba/0.50.0-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +llvmlite-0.33.0, numba-0.50.0 + +### numba/0.47.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +llvmlite-0.31.0, numba-0.47.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/numexpr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/numexpr.md index 411d6a49f3d6..2a3810ab7441 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/numexpr.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/numexpr.md @@ -6,6 +6,10 @@ hide: numexpr ======= + +The numexpr package evaluates multiple-operator array expressions many times faster than NumPy can. It accepts the expression as a string, analyzes it, rewrites it more efficiently, and compiles it on the fly into code for its internal virtual machine (VM). Due to its integrated just-in-time (JIT) compiler, it does not require a compiler at runtime. + +https://numexpr.readthedocs.io/en/latest/ # Available modules @@ -17,7 +21,7 @@ To start using numexpr, load one of these modules using a `module load` command module load numexpr/2.7.1-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nvtop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nvtop.md index 71d9441aebee..7ac2740b9a05 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nvtop.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nvtop.md @@ -6,6 +6,10 @@ hide: nvtop ===== + +htop-like GPU usage monitor + +https://github.com/Syllo/nvtop # Available modules @@ -17,7 +21,7 @@ To start using nvtop, load one of these modules using a `module load` command li module load nvtop/1.2.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/olaFlow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/olaFlow.md index 398c97235aa0..3947f6ed839e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/olaFlow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/olaFlow.md @@ -6,6 +6,10 @@ hide: olaFlow ======= + +olaFlow CFD Suite is a free and open source project committed to bringing the latestadvances for the simulation of wave dynamics to the OpenFOAM® and FOAM-extend communities. + +https://olaflow.github.io/ # Available modules @@ -17,7 +21,7 @@ To start using olaFlow, load one of these modules using a `module load` command module load olaFlow/20210820-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/olego.md b/mkdocs/docs/HPC/only/gent/available_software/detail/olego.md index 4e1bf1a4aee2..cf4a96af7b3e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/olego.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/olego.md @@ -6,6 +6,10 @@ hide: olego ===== + +OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adoptsa seed-and-extend scheme, and does not rely on a separate external mapper. + +https://github.com/chaolinzhanglab/olego # Available modules @@ -17,7 +21,7 @@ To start using olego, load one of these modules using a `module load` command li module load olego/1.1.9-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/onedrive.md b/mkdocs/docs/HPC/only/gent/available_software/detail/onedrive.md index ff4db7b01933..77654da5a864 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/onedrive.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/onedrive.md @@ -6,6 +6,10 @@ hide: onedrive ======== + +A free Microsoft OneDrive Client which supports OneDrive Personal, OneDrive for Business,OneDrive for Office365 and SharePoint. + +https://abraunegg.github.io/ # Available modules @@ -17,7 +21,7 @@ To start using onedrive, load one of these modules using a `module load` command module load onedrive/2.4.21-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ont-fast5-api.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ont-fast5-api.md index 5b78d08b40dd..cd52fd59682b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ont-fast5-api.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ont-fast5-api.md @@ -6,6 +6,10 @@ hide: ont-fast5-api ============= + +ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore .fast5 file format. + +https://github.com/nanoporetech/ont_fast5_api # Available modules @@ -17,7 +21,7 @@ To start using ont-fast5-api, load one of these modules using a `module load` co module load ont-fast5-api/4.1.1-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,46 @@ module load ont-fast5-api/4.1.1-foss-2022b |ont-fast5-api/3.3.0-fosscuda-2020b|-|-|-|-|x|-| |ont-fast5-api/3.3.0-foss-2020b|-|x|x|x|x|x| |ont-fast5-api/3.3.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### ont-fast5-api/4.1.1-foss-2022b + +This is a list of extensions included in the module: + +ont-fast5-api-4.1.1, progressbar33-2.4 + +### ont-fast5-api/4.1.1-foss-2022a + +This is a list of extensions included in the module: + +ont-fast5-api-4.1.1, progressbar33-2.4 + +### ont-fast5-api/4.0.2-foss-2021b + +This is a list of extensions included in the module: + +ont-fast5-api-4.0.2, progressbar33-2.4 + +### ont-fast5-api/4.0.0-foss-2021a + +This is a list of extensions included in the module: + +ont-fast5-api-4.0.0, progressbar33-2.4 + +### ont-fast5-api/3.3.0-fosscuda-2020b + +This is a list of extensions included in the module: + +ont-fast5-api-3.3.0, progressbar33-2.4 + +### ont-fast5-api/3.3.0-foss-2020b + +This is a list of extensions included in the module: + +ont-fast5-api-3.3.0, progressbar33-2.4 + +### ont-fast5-api/3.3.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +ont-fast5-api-3.3.0, progressbar33-2.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/openCARP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/openCARP.md index b3e97c0b6865..c4b1a1cbf4ab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/openCARP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/openCARP.md @@ -6,6 +6,10 @@ hide: openCARP ======== + +openCARP is an open cardiac electrophysiology simulator for in-silico experiments. + +https://opencarp.org # Available modules @@ -17,7 +21,7 @@ To start using openCARP, load one of these modules using a `module load` command module load openCARP/6.0-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/openkim-models.md b/mkdocs/docs/HPC/only/gent/available_software/detail/openkim-models.md index 973932303c06..5c6427af878d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/openkim-models.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/openkim-models.md @@ -6,6 +6,10 @@ hide: openkim-models ============== + +Open Knowledgebase of Interatomic Models.OpenKIM is an API and a collection of interatomic models (potentials) foratomistic simulations. It is a library that can be used by simulation programsto get access to the models in the OpenKIM database.This EasyBuild installs the models. The API itself is in the kim-apipackage. + +https://openkim.org/ # Available modules @@ -17,7 +21,7 @@ To start using openkim-models, load one of these modules using a `module load` c module load openkim-models/20190725-intel-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/openpyxl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/openpyxl.md index c891b5b16633..6f44ad3bea3b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/openpyxl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/openpyxl.md @@ -6,6 +6,10 @@ hide: openpyxl ======== + +A Python library to read/write Excel 2010 xlsx/xlsm files + +https://openpyxl.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using openpyxl, load one of these modules using a `module load` command module load openpyxl/3.1.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,46 @@ module load openpyxl/3.1.2-GCCcore-13.2.0 |openpyxl/3.0.9-GCCcore-11.2.0|x|x|x|x|x|x| |openpyxl/3.0.7-GCCcore-10.3.0|x|x|x|x|x|x| |openpyxl/2.6.4-GCCcore-8.3.0-Python-2.7.16|-|x|x|-|x|x| + + +### openpyxl/3.1.2-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.1.2 + +### openpyxl/3.1.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.1.2 + +### openpyxl/3.1.2-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.1.2 + +### openpyxl/3.0.10-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.0.10 + +### openpyxl/3.0.9-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.0.9 + +### openpyxl/3.0.7-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.0.7 + +### openpyxl/2.6.4-GCCcore-8.3.0-Python-2.7.16 + +This is a list of extensions included in the module: + +et_xmlfile-1.0.1, jdcal-1.4.1, openpyxl-2.6.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/openslide-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/openslide-python.md index f3e2c62725eb..d37b498b822f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/openslide-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/openslide-python.md @@ -6,6 +6,10 @@ hide: openslide-python ================ + +OpenSlide Python is a Python interface to the OpenSlide library. + +https://github.com/openslide/openslide-python # Available modules @@ -17,7 +21,7 @@ To start using openslide-python, load one of these modules using a `module load` module load openslide-python/1.2.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/orca.md b/mkdocs/docs/HPC/only/gent/available_software/detail/orca.md index 37c2deb4d4c2..2a74235d92d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/orca.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/orca.md @@ -6,6 +6,10 @@ hide: orca ==== + +Orca is an Electron app that generates images and reports of Plotly things like plotly.js graphs, dash apps, dashboards from the command line. + +https://github.com/plotly/orca # Available modules @@ -17,7 +21,7 @@ To start using orca, load one of these modules using a `module load` command lik module load orca/1.3.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/p11-kit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/p11-kit.md index 747f05fc2aa7..1568a0c36c3c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/p11-kit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/p11-kit.md @@ -6,6 +6,10 @@ hide: p11-kit ======= + +Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process. + +https://p11-glue.freedesktop.org/p11-kit.html # Available modules @@ -17,7 +21,7 @@ To start using p11-kit, load one of these modules using a `module load` command module load p11-kit/0.24.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/p4est.md b/mkdocs/docs/HPC/only/gent/available_software/detail/p4est.md index de8da3598440..dc05a94aaa9e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/p4est.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/p4est.md @@ -6,6 +6,10 @@ hide: p4est ===== + +p4est is a C library to manage a collection (a forest) of multipleconnected adaptive quadtrees or octrees in parallel. + +https://www.p4est.org # Available modules @@ -17,7 +21,7 @@ To start using p4est, load one of these modules using a `module load` command li module load p4est/2.8-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/p7zip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/p7zip.md index 28a2b9ab47e5..e4a4df4aceea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/p7zip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/p7zip.md @@ -6,6 +6,10 @@ hide: p7zip ===== + +p7zip is a quick port of 7z.exe and 7za.exe (CLI version of7zip) for Unix. 7-Zip is a file archiver with highest compression ratio. + +https://github.com/jinfeihan57/p7zip/ # Available modules @@ -17,7 +21,7 @@ To start using p7zip, load one of these modules using a `module load` command li module load p7zip/17.03-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pIRS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pIRS.md index 00b2a1dde943..d8ce7dc254ca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pIRS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pIRS.md @@ -6,6 +6,10 @@ hide: pIRS ==== + +pIRS (profile based Illumina pair-end Reads Simulator) is a program for simulating paired-end readsfrom a reference genome. It is optimized for simulating reads similar to those generated from the Illumina platform. + +https://github.com/galaxy001/pirs # Available modules @@ -17,7 +21,7 @@ To start using pIRS, load one of these modules using a `module load` command lik module load pIRS/2.0.2-gompi-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/packmol.md b/mkdocs/docs/HPC/only/gent/available_software/detail/packmol.md index c9a98eb8b8e0..4208068d3d53 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/packmol.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/packmol.md @@ -6,6 +6,10 @@ hide: packmol ======= + +Packing Optimization for Molecular Dynamics Simulations + +http://m3g.iqm.unicamp.br/packmol # Available modules @@ -17,7 +21,7 @@ To start using packmol, load one of these modules using a `module load` command module load packmol/v20.2.2-iccifort-2020.1.217 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pagmo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pagmo.md index a73fd638e1b8..610e0edf8d8c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pagmo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pagmo.md @@ -6,6 +6,10 @@ hide: pagmo ===== + +pagmo is a C++ scientific library for massively parallel optimization. + +https://esa.github.io/pagmo2 # Available modules @@ -17,7 +21,7 @@ To start using pagmo, load one of these modules using a `module load` command li module load pagmo/2.17.0-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pairtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pairtools.md index fb94ce0d043a..f84e8f742764 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pairtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pairtools.md @@ -6,6 +6,10 @@ hide: pairtools ========= + +pairtools is a simple and fast command-line framework to process sequencing data from a Hi-C experiment. + +https://github.com/mirnylab/pairtools # Available modules @@ -17,7 +21,7 @@ To start using pairtools, load one of these modules using a `module load` comman module load pairtools/0.3.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/panaroo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/panaroo.md index d61ed0a0200b..2e7bde2e86c0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/panaroo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/panaroo.md @@ -6,6 +6,10 @@ hide: panaroo ======= + +A pangenome analysis pipeline. + +https://gtonkinhill.github.io/panaroo/ # Available modules @@ -17,8 +21,15 @@ To start using panaroo, load one of these modules using a `module load` command module load panaroo/1.2.8-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |panaroo/1.2.8-foss-2020b|-|x|x|x|x|x| + + +### panaroo/1.2.8-foss-2020b + +This is a list of extensions included in the module: + +argcomplete-1.12.3, argh-0.26.2, gffutils-0.10.1, intbitset-2.4.1, panaroo-1.2.8, sklearn-0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pandas.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pandas.md index 086cda3ee128..c572ddbb64fe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pandas.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pandas.md @@ -6,6 +6,10 @@ hide: pandas ====== + +pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language. + +https://pypi.python.org/pypi/pandas/ # Available modules @@ -17,7 +21,7 @@ To start using pandas, load one of these modules using a `module load` command l module load pandas/1.1.2-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/parallel-fastq-dump.md b/mkdocs/docs/HPC/only/gent/available_software/detail/parallel-fastq-dump.md index 36341e42c622..2c0d7bc12a0b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/parallel-fastq-dump.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/parallel-fastq-dump.md @@ -6,6 +6,10 @@ hide: parallel-fastq-dump =================== + +parallel fastq-dump wrapper + +https://github.com/rvalieris/parallel-fastq-dump # Available modules @@ -17,7 +21,7 @@ To start using parallel-fastq-dump, load one of these modules using a `module lo module load parallel-fastq-dump/0.6.7-gompi-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/parallel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/parallel.md index 00ab49534818..ec5edfc3ed86 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/parallel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/parallel.md @@ -6,6 +6,10 @@ hide: parallel ======== + +parallel: Build and execute shell commands in parallel + +https://savannah.gnu.org/projects/parallel/ # Available modules @@ -17,7 +21,7 @@ To start using parallel, load one of these modules using a `module load` command module load parallel/20230722-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/parasail.md b/mkdocs/docs/HPC/only/gent/available_software/detail/parasail.md index f5f0e887edc5..7fcef291519d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/parasail.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/parasail.md @@ -6,6 +6,10 @@ hide: parasail ======== + +parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and semi-global pairwise sequence alignment algorithms. + +https://github.com/jeffdaily/parasail # Available modules @@ -17,7 +21,7 @@ To start using parasail, load one of these modules using a `module load` command module load parasail/2.6-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/patchelf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/patchelf.md index 1e2dffff6460..073a090ff54e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/patchelf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/patchelf.md @@ -6,6 +6,10 @@ hide: patchelf ======== + +PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables. + +https://github.com/NixOS/patchelf # Available modules @@ -17,7 +21,7 @@ To start using patchelf, load one of these modules using a `module load` command module load patchelf/0.18.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pauvre.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pauvre.md index 5de581b494ec..1a7186745887 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pauvre.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pauvre.md @@ -6,6 +6,10 @@ hide: pauvre ====== + +Tools for plotting Oxford Nanopore and other long-read data + +https://github.com/conchoecia/pauvre # Available modules @@ -17,7 +21,7 @@ To start using pauvre, load one of these modules using a `module load` command l module load pauvre/0.1924-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pblat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pblat.md index 4d41b5d9ab71..e8be5b3d4323 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pblat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pblat.md @@ -6,6 +6,10 @@ hide: pblat ===== + +When the query file format is fasta, you can specify many threads to process it. It can reduce run time linearly, and use almost equal memory as the original blat program. This is useful when you blat a big query file to a huge reference like human whole genome sequence. + +https://github.com/icebert/pblat # Available modules @@ -17,7 +21,7 @@ To start using pblat, load one of these modules using a `module load` command li module load pblat/2.5.1-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pdsh.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pdsh.md index f5c14186524a..893422595342 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pdsh.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pdsh.md @@ -6,6 +6,10 @@ hide: pdsh ==== + +A high performance, parallel remote shell utility + +https://github.com/chaos/pdsh # Available modules @@ -17,7 +21,7 @@ To start using pdsh, load one of these modules using a `module load` command lik module load pdsh/2.34-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/peakdetect.md b/mkdocs/docs/HPC/only/gent/available_software/detail/peakdetect.md index e1c0038e3fd4..f88ee4c7b8a4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/peakdetect.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/peakdetect.md @@ -6,6 +6,10 @@ hide: peakdetect ========== + +Simple peak detection library for Python based on Billauer's work and this gist. + +https://github.com/avhn/peakdetect # Available modules @@ -17,7 +21,7 @@ To start using peakdetect, load one of these modules using a `module load` comma module load peakdetect/1.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/petsc4py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/petsc4py.md index f4fc842fdbd5..a2b0e46aad18 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/petsc4py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/petsc4py.md @@ -6,6 +6,10 @@ hide: petsc4py ======== + +petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation. + +https://bitbucket.org/petsc/petsc4py # Available modules @@ -17,7 +21,7 @@ To start using petsc4py, load one of these modules using a `module load` command module load petsc4py/3.17.4-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pftoolsV3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pftoolsV3.md index 69b6881ded4e..bb56c4824f7a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pftoolsV3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pftoolsV3.md @@ -6,6 +6,10 @@ hide: pftoolsV3 ========= + +A suite of tools to build and search generalized profiles (protein and DNA). + +https://github.com/sib-swiss/pftools3 # Available modules @@ -17,7 +21,7 @@ To start using pftoolsV3, load one of these modules using a `module load` comman module load pftoolsV3/3.2.11-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/phonemizer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/phonemizer.md index 01eb41955b39..4d22cd8a35dc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/phonemizer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/phonemizer.md @@ -6,6 +6,10 @@ hide: phonemizer ========== + +The phonemizer allows simple phonemization of words and texts in many languages.Provides both the phonemize command-line tool and the Python function phonemizer.phonemize.It is using four backends: espeak, espeak-mbrola, festival and segments. + +https://github.com/bootphon/phonemizer # Available modules @@ -17,8 +21,15 @@ To start using phonemizer, load one of these modules using a `module load` comma module load phonemizer/2.2.1-gompi-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |phonemizer/2.2.1-gompi-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### phonemizer/2.2.1-gompi-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +clldutils-3.5.2, colorlog-4.2.1, csvw-1.8.0, isodate-0.6.0, phonemizer-2.2.1, regex-2020.7.14, rfc3986-1.4.0, segments-2.1.3, uritemplate-3.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md index f0ab64a8b2e3..27697ff9d549 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md @@ -6,6 +6,10 @@ hide: phonopy ======= + +Phonopy is an open source package of phonon calculations based on the supercell approach. + +https://atztogo.github.io/phonopy/ # Available modules @@ -17,7 +21,7 @@ To start using phonopy, load one of these modules using a `module load` command module load phonopy/2.7.1-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/phototonic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/phototonic.md index 42abec99e93d..d7fc11c625a3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/phototonic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/phototonic.md @@ -6,6 +6,10 @@ hide: phototonic ========== + +Phototonic is an image viewer and organizer + +https://github.com/oferkv/phototonic # Available modules @@ -17,7 +21,7 @@ To start using phototonic, load one of these modules using a `module load` comma module load phototonic/2.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/phyluce.md b/mkdocs/docs/HPC/only/gent/available_software/detail/phyluce.md index f52fc71b95da..8dbce9cc16d8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/phyluce.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/phyluce.md @@ -6,6 +6,10 @@ hide: phyluce ======= + +phyluce is a software package for working with data generated from sequence capture of UCE (ultra-conserved element) loci, as first published in [BCF2012]. Specifically, phyluce is a suite of programs to:1) assemble raw sequence reads from Illumina platforms into contigs2) determine which contigs represent UCE loci3) filter potentially paralagous UCE loci4) generate different sets of UCE loci across taxa of interest + +https://github.com/faircloth-lab/phyluce # Available modules @@ -17,8 +21,15 @@ To start using phyluce, load one of these modules using a `module load` command module load phyluce/1.7.3-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |phyluce/1.7.3-foss-2023a|x|x|x|x|x|x| + + +### phyluce/1.7.3-foss-2023a + +This is a list of extensions included in the module: + +phyluce-1.7.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/picard.md b/mkdocs/docs/HPC/only/gent/available_software/detail/picard.md index 86a8a0f4d65b..6b19d0102305 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/picard.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/picard.md @@ -6,6 +6,10 @@ hide: picard ====== + +A set of tools (in Java) for working with next generation sequencing data in the BAM format. + +http://sourceforge.net/projects/picard # Available modules @@ -17,7 +21,7 @@ To start using picard, load one of these modules using a `module load` command l module load picard/2.25.1-Java-11 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md index 584c38dc2bcc..4214269a80ed 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md @@ -6,6 +6,10 @@ hide: pigz ==== + +pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries. + +https://zlib.net/pigz/ # Available modules @@ -17,7 +21,7 @@ To start using pigz, load one of these modules using a `module load` command lik module load pigz/2.8-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pixman.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pixman.md index 8099ecc26855..d0fae88ea30b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pixman.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pixman.md @@ -6,6 +6,10 @@ hide: pixman ====== + +Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server. + +http://www.pixman.org/ # Available modules @@ -17,7 +21,7 @@ To start using pixman, load one of these modules using a `module load` command l module load pixman/0.42.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pkg-config.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pkg-config.md index 977977c2a35d..31a95ad30dbe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pkg-config.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pkg-config.md @@ -6,6 +6,10 @@ hide: pkg-config ========== + +pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries). + +http://www.freedesktop.org/wiki/Software/pkg-config/ # Available modules @@ -17,7 +21,7 @@ To start using pkg-config, load one of these modules using a `module load` comma module load pkg-config/0.29.2-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconf.md index 9ecfcfb103a5..0da5d6d7da39 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconf.md @@ -6,6 +6,10 @@ hide: pkgconf ======= + +pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. + +https://github.com/pkgconf/pkgconf # Available modules @@ -17,7 +21,7 @@ To start using pkgconf, load one of these modules using a `module load` command module load pkgconf/2.0.3-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconfig.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconfig.md index 4b003785282b..9e64116e0257 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconfig.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconfig.md @@ -6,6 +6,10 @@ hide: pkgconfig ========= + +pkgconfig is a Python module to interface with the pkg-config command line tool + +https://github.com/matze/pkgconfig # Available modules @@ -17,7 +21,7 @@ To start using pkgconfig, load one of these modules using a `module load` comman module load pkgconfig/1.5.5-GCCcore-12.3.0-python ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -29,3 +33,10 @@ module load pkgconfig/1.5.5-GCCcore-12.3.0-python |pkgconfig/1.5.1-GCCcore-10.2.0-python|x|x|x|x|x|x| |pkgconfig/1.5.1-GCCcore-9.3.0-Python-3.8.2|x|x|x|x|x|x| |pkgconfig/1.5.1-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| + + +### pkgconfig/1.5.1-GCCcore-8.3.0-Python-3.7.4 + +This is a list of extensions included in the module: + +pkgconfig-1.5.1, poetry-0.12.17 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/plot1cell.md b/mkdocs/docs/HPC/only/gent/available_software/detail/plot1cell.md index 5115976be619..e4afd98fb1d9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/plot1cell.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/plot1cell.md @@ -6,6 +6,10 @@ hide: plot1cell ========= + +plot1cell: a package for advanced single cell data visualization + +https://github.com/HaojiaWu/plot1cell # Available modules @@ -17,7 +21,7 @@ To start using plot1cell, load one of these modules using a `module load` comman module load plot1cell/0.0.1-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/plotly-orca.md b/mkdocs/docs/HPC/only/gent/available_software/detail/plotly-orca.md index d73e2c384caa..b7640888f921 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/plotly-orca.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/plotly-orca.md @@ -6,6 +6,10 @@ hide: plotly-orca =========== + +Orca is an Electron app that generates images and reports of Plotly things like plotly.js graphs, dash apps, dashboards from the command line. + +https://github.com/plotly/orca # Available modules @@ -17,7 +21,7 @@ To start using plotly-orca, load one of these modules using a `module load` comm module load plotly-orca/1.3.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/plotly.py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/plotly.py.md index 8dba5d4d464a..9b7941487d27 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/plotly.py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/plotly.py.md @@ -6,6 +6,10 @@ hide: plotly.py ========= + +An open-source, interactive graphing library for Python + +https://plot.ly/python # Available modules @@ -17,7 +21,7 @@ To start using plotly.py, load one of these modules using a `module load` comman module load plotly.py/5.16.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -30,3 +34,58 @@ module load plotly.py/5.16.0-GCCcore-12.3.0 |plotly.py/4.14.3-GCCcore-10.2.0|-|x|x|x|x|x| |plotly.py/4.8.1-GCCcore-9.3.0|-|x|x|-|x|x| |plotly.py/4.4.1-intel-2019b|-|x|x|-|x|x| + + +### plotly.py/5.16.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +packaging-23.1, plotly-5.16.0, tenacity-8.2.3 + +### plotly.py/5.13.1-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +plotly-5.13.1, tenacity-8.2.2 + +### plotly.py/5.12.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +plotly-5.12.0, tenacity-8.0.1 + +### plotly.py/5.10.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +plotly-5.10.0, tenacity-8.1.0 + +### plotly.py/5.4.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +plotly-5.4.0, tenacity-8.0.1 + +### plotly.py/5.1.0-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +plotly-5.1.0, tenacity-8.0.1 + +### plotly.py/4.14.3-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +plotly-4.14.3, retrying-1.3.3 + +### plotly.py/4.8.1-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +plotly-4.8.1, retrying-1.3.3 + +### plotly.py/4.4.1-intel-2019b + +This is a list of extensions included in the module: + +plotly-4.4.1, retrying-1.3.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pocl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pocl.md index 59aef340f976..70750da41d3c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pocl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pocl.md @@ -6,6 +6,10 @@ hide: pocl ==== + +Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard + +https://portablecl.org # Available modules @@ -17,7 +21,7 @@ To start using pocl, load one of these modules using a `module load` command lik module load pocl/4.0-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pod5-file-format.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pod5-file-format.md index 477846b3ef32..f3177896473c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pod5-file-format.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pod5-file-format.md @@ -6,6 +6,10 @@ hide: pod5-file-format ================ + +POD5 is a file format for storing nanopore dna data in an easily accessible way. The format is able to be written in a streaming manner which allows a sequencing instrument to directly write the format. + +https://github.com/nanoporetech/pod5-file-format # Available modules @@ -17,8 +21,15 @@ To start using pod5-file-format, load one of these modules using a `module load` module load pod5-file-format/0.1.8-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pod5-file-format/0.1.8-foss-2022a|x|x|x|x|x|x| + + +### pod5-file-format/0.1.8-foss-2022a + +This is a list of extensions included in the module: + +attrs-22.2.0, iso8601-1.1.0, pod5-0.1.8, vbz_h5py_plugin-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/poetry.md b/mkdocs/docs/HPC/only/gent/available_software/detail/poetry.md index 9bde95358e06..d08fd6a14e13 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/poetry.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/poetry.md @@ -6,6 +6,10 @@ hide: poetry ====== + +Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere. + +https://python-poetry.org # Available modules @@ -17,7 +21,7 @@ To start using poetry, load one of these modules using a `module load` command l module load poetry/1.7.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,28 @@ module load poetry/1.7.1-GCCcore-12.3.0 |poetry/1.6.1-GCCcore-13.2.0|x|x|x|x|x|x| |poetry/1.5.1-GCCcore-12.3.0|x|x|x|x|x|x| |poetry/1.0.9-GCCcore-9.3.0-Python-3.8.2|x|x|x|x|x|x| + + +### poetry/1.7.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +attrs-23.2.0, build-1.0.3, CacheControl-0.13.1, certifi-2023.11.17, charset-normalizer-3.3.2, cleo-2.1.0, crashtest-0.4.1, dulwich-0.21.7, fastjsonschema-2.19.1, html5lib-1.1, idna-3.6, importlib_metadata-7.0.1, installer-0.7.0, jaraco.classes-3.3.0, jeepney-0.8.0, jsonschema-4.21.0, jsonschema_specifications-2023.12.1, keyring-24.3.0, lockfile-0.12.2, more-itertools-10.2.0, msgpack-1.0.7, pexpect-4.9.0, pkginfo-1.9.6, platformdirs-3.11.0, poetry-1.7.1, poetry_core-1.8.1, poetry_plugin_export-1.6.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.20.0, rapidfuzz-3.6.1, referencing-0.32.1, requests-2.31.0, requests-toolbelt-1.0.0, rpds_py-0.17.1, SecretStorage-3.3.3, shellingham-1.5.4, six-1.16.0, tomlkit-0.12.3, urllib3-2.1.0, webencodings-0.5.1, zipp-3.17.0 + +### poetry/1.6.1-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +attrs-23.1.0, build-0.10.0, cachecontrol-0.13.1, certifi-2023.7.22, charset-normalizer-3.3.1, cleo-2.0.1, crashtest-0.4.1, dulwich-0.21.6, html5lib-1.1, idna-3.4, importlib_metadata-6.8.0, installer-0.7.0, jaraco.classes-3.3.0, jeepney-0.8.0, jsonschema-4.17.3, keyring-24.2.0, lockfile-0.12.2, more-itertools-10.1.0, msgpack-1.0.7, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.11.0, poetry-1.6.1, poetry_core-1.7.0, poetry_plugin_export-1.5.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.20.0, rapidfuzz-2.15.2, requests-2.31.0, requests-toolbelt-1.0.0, SecretStorage-3.3.3, shellingham-1.5.4, six-1.16.0, tomlkit-0.12.1, urllib3-2.0.7, webencodings-0.5.1, zipp-3.17.0 + +### poetry/1.5.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +attrs-23.1.0, build-0.10.0, CacheControl-0.12.14, certifi-2023.5.7, charset-normalizer-3.1.0, cleo-2.0.1, crashtest-0.4.1, dulwich-0.21.5, html5lib-1.1, idna-3.4, importlib_metadata-6.7.0, installer-0.7.0, jaraco.classes-3.2.3, jeepney-0.8.0, jsonschema-4.17.3, keyring-23.13.1, lockfile-0.12.2, more-itertools-9.1.0, msgpack-1.0.5, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.8.0, poetry-1.5.1, poetry_core-1.6.1, poetry_plugin_export-1.4.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.19.3, rapidfuzz-2.15.1, requests-2.31.0, requests-toolbelt-1.0.0, SecretStorage-3.3.3, shellingham-1.5.0, six-1.16.0, tomlkit-0.11.8, urllib3-1.26.16, webencodings-0.5.1, zipp-3.15.0 + +### poetry/1.0.9-GCCcore-9.3.0-Python-3.8.2 + +This is a list of extensions included in the module: + +CacheControl-0.12.6, cachy-0.3.0, cleo-0.7.6, clikit-0.4.3, crashtest-0.3.0, html5lib-1.1, intreehooks-1.0, jeepney-0.4.3, jsonschema-3.2.0, keyring-20.0.1, keyrings.alt-3.4.0, lockfile-0.12.2, msgpack-1.0.0, pastel-0.2.0, pexpect-4.8.0, pkginfo-1.5.0.1, poetry-1.0.9, ptyprocess-0.6.0, pylev-1.3.0, pyrsistent-0.14.11, pytoml-0.1.21, requests-toolbelt-0.8.0, SecretStorage-3.1.2, shellingham-1.3.2, tomlkit-0.5.11, webencodings-0.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md b/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md index d8aabf5cd839..a74e7e18a6bd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md @@ -6,6 +6,10 @@ hide: polars ====== + +Lightning-fast DataFrame library for Rust and Python. + +https://pola.rs/ # Available modules @@ -17,8 +21,15 @@ To start using polars, load one of these modules using a `module load` command l module load polars/0.15.6-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |polars/0.15.6-foss-2022a|x|x|x|x|x|x| + + +### polars/0.15.6-foss-2022a + +This is a list of extensions included in the module: + +connectorx-0.3.1, deltalake-0.6.4, maturin-0.14.6, polars-0.15.6, setuptools-65.6.3, setuptools-rust-1.5.2, xlsx2csv-0.8.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/poppler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/poppler.md index 4e3555c777f8..bb9766532e61 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/poppler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/poppler.md @@ -6,6 +6,10 @@ hide: poppler ======= + +Poppler is a PDF rendering library + +https://poppler.freedesktop.org # Available modules @@ -17,7 +21,7 @@ To start using poppler, load one of these modules using a `module load` command module load poppler/23.09.0-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/popscle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/popscle.md index ad96ece3c6f3..1a5af9f93957 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/popscle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/popscle.md @@ -6,6 +6,10 @@ hide: popscle ======= + +A suite ofpopulation scale analysis tools for single-cell genomics data includingimplementation of Demuxlet / Freemuxlet methods and auxilary tools + +https://github.com/statgen/popscle # Available modules @@ -17,7 +21,7 @@ To start using popscle, load one of these modules using a `module load` command module load popscle/0.1-beta-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/porefoam.md b/mkdocs/docs/HPC/only/gent/available_software/detail/porefoam.md index f3bdcd860f9b..300eaafa91fd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/porefoam.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/porefoam.md @@ -6,6 +6,10 @@ hide: porefoam ======== + +Direct pore-scale simulation of single- and two-phase flow through confined media + +https://github.com/ImperialCollegeLondon/porefoam # Available modules @@ -17,7 +21,7 @@ To start using porefoam, load one of these modules using a `module load` command module load porefoam/2021-09-21-foss-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/powerlaw.md b/mkdocs/docs/HPC/only/gent/available_software/detail/powerlaw.md index dd41e6049033..2d3955b9e484 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/powerlaw.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/powerlaw.md @@ -6,6 +6,10 @@ hide: powerlaw ======== + +powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions + +http://www.github.com/jeffalstott/powerlaw # Available modules @@ -17,7 +21,7 @@ To start using powerlaw, load one of these modules using a `module load` command module load powerlaw/1.5-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pplacer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pplacer.md index fe63c3000659..46f4e68d7e1d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pplacer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pplacer.md @@ -6,6 +6,10 @@ hide: pplacer ======= + +Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis. + +http://matsen.fhcrc.org/pplacer/ # Available modules @@ -17,7 +21,7 @@ To start using pplacer, load one of these modules using a `module load` command module load pplacer/1.1.alpha19 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/preseq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/preseq.md index 7f90424ce18a..f10dc0b47f52 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/preseq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/preseq.md @@ -6,6 +6,10 @@ hide: preseq ====== + +Software for predicting library complexity and genome coverage in high-throughput sequencing. + +https://smithlabresearch.org/software/preseq # Available modules @@ -17,7 +21,7 @@ To start using preseq, load one of these modules using a `module load` command l module load preseq/3.2.0-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/presto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/presto.md index 0dea054b12c5..5037cc9846af 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/presto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/presto.md @@ -6,6 +6,10 @@ hide: presto ====== + +Presto performs a fast Wilcoxon rank sum test and auROC analysis. + +https://github.com/immunogenomics/presto # Available modules @@ -17,7 +21,7 @@ To start using presto, load one of these modules using a `module load` command l module load presto/1.0.0-20230501-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pretty-yaml.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pretty-yaml.md index 9dd54545e166..7f3236ef4868 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pretty-yaml.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pretty-yaml.md @@ -6,6 +6,10 @@ hide: pretty-yaml =========== + +PyYAML-based python module to produce pretty and readable YAML-serialized data.This module is for serialization only, see ruamel.yaml module for literate YAMLparsing (keeping track of comments, spacing, line/column numbers of values, etc). + +https://github.com/mk-fg/pretty-yaml # Available modules @@ -17,7 +21,7 @@ To start using pretty-yaml, load one of these modules using a `module load` comm module load pretty-yaml/21.10.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/prodigal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/prodigal.md index c78e15344448..c60ebba9931f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/prodigal.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/prodigal.md @@ -6,6 +6,10 @@ hide: prodigal ======== + +Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. + +https://github.com/hyattpd/Prodigal/ # Available modules @@ -17,7 +21,7 @@ To start using prodigal, load one of these modules using a `module load` command module load prodigal/2.6.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/prokka.md b/mkdocs/docs/HPC/only/gent/available_software/detail/prokka.md index 63d808a46e43..f3fa880eadcd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/prokka.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/prokka.md @@ -6,6 +6,10 @@ hide: prokka ====== + +Prokka is a software tool for the rapid annotation of prokaryotic genomes. + +https://www.vicbioinformatics.com/software.prokka.shtml # Available modules @@ -17,7 +21,7 @@ To start using prokka, load one of these modules using a `module load` command l module load prokka/1.14.5-gompi-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf-python.md index 833dabe794dd..8eb539ac96d6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf-python.md @@ -6,6 +6,10 @@ hide: protobuf-python =============== + +Python Protocol Buffers runtime library. + +https://github.com/google/protobuf/ # Available modules @@ -17,7 +21,7 @@ To start using protobuf-python, load one of these modules using a `module load` module load protobuf-python/4.24.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf.md index 19805e20114e..c0e22afd8605 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf.md @@ -6,6 +6,10 @@ hide: protobuf ======== + +Google Protocol Buffers + +https://github.com/google/protobuf/ # Available modules @@ -17,7 +21,7 @@ To start using protobuf, load one of these modules using a `module load` command module load protobuf/24.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md b/mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md index bf6710c0bb58..554d074863b7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md @@ -6,6 +6,10 @@ hide: psutil ====== + +A cross-platform process and system utilities module for Python + +https://github.com/giampaolo/psutil # Available modules @@ -17,8 +21,15 @@ To start using psutil, load one of these modules using a `module load` command l module load psutil/5.9.5-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |psutil/5.9.5-GCCcore-12.2.0|x|x|x|x|x|x| + + +### psutil/5.9.5-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +psutil-5.9.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/psycopg2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/psycopg2.md index a6d363cc5996..99ce9dd20244 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/psycopg2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/psycopg2.md @@ -6,6 +6,10 @@ hide: psycopg2 ======== + +Psycopg is the most popular PostgreSQL adapter for the Python programming language. + +https://psycopg.org/ # Available modules @@ -17,7 +21,7 @@ To start using psycopg2, load one of these modules using a `module load` command module load psycopg2/2.9.6-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pugixml.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pugixml.md index d7e34c6bdcf5..b7a5405096e5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pugixml.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pugixml.md @@ -6,6 +6,10 @@ hide: pugixml ======= + +pugixml is a light-weight C++ XML processing library + +https://pugixml.org/ # Available modules @@ -17,7 +21,7 @@ To start using pugixml, load one of these modules using a `module load` command module load pugixml/1.12.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pullseq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pullseq.md index e87ef5c00f2b..536c7c05c620 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pullseq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pullseq.md @@ -6,6 +6,10 @@ hide: pullseq ======= + +Utility program for extracting sequences from a fasta/fastq file + +https://github.com/bcthomas/pullseq # Available modules @@ -17,7 +21,7 @@ To start using pullseq, load one of these modules using a `module load` command module load pullseq/1.0.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/purge_dups.md b/mkdocs/docs/HPC/only/gent/available_software/detail/purge_dups.md index ae98f3f259e5..a3e6a9f5d5b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/purge_dups.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/purge_dups.md @@ -6,6 +6,10 @@ hide: purge_dups ========== + +purge haplotigs and overlaps in an assembly based on read depth + +https://github.com/dfguan/purge_dups # Available modules @@ -17,8 +21,15 @@ To start using purge_dups, load one of these modules using a `module load` comma module load purge_dups/1.2.5-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |purge_dups/1.2.5-foss-2021b|x|x|x|-|x|x| + + +### purge_dups/1.2.5-foss-2021b + +This is a list of extensions included in the module: + +runner-20191220 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pv.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pv.md index 5b6618e016ee..22e7ffddc0fc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pv.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pv.md @@ -6,6 +6,10 @@ hide: pv == + +Pipe Viewer - monitor the progress of data through a pipe + +https://www.ivarch.com/programs/pv.shtml # Available modules @@ -17,7 +21,7 @@ To start using pv, load one of these modules using a `module load` command like: module load pv/1.7.24-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/py-cpuinfo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/py-cpuinfo.md index 448a1b99bc16..dbbde328a198 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/py-cpuinfo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/py-cpuinfo.md @@ -6,6 +6,10 @@ hide: py-cpuinfo ========== + +py-cpuinfo gets CPU info with pure Python. + +https://github.com/workhorsy/py-cpuinfo # Available modules @@ -17,7 +21,7 @@ To start using py-cpuinfo, load one of these modules using a `module load` comma module load py-cpuinfo/9.0.0-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/py3Dmol.md b/mkdocs/docs/HPC/only/gent/available_software/detail/py3Dmol.md index bf0e7475107e..cb87dd2a43af 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/py3Dmol.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/py3Dmol.md @@ -6,6 +6,10 @@ hide: py3Dmol ======= + +A simple IPython/Jupyter widget to embed an interactive 3Dmol.js viewer in a notebook. + +https://github.com/3dmol/3Dmol.js/tree/master/py3Dmol # Available modules @@ -17,8 +21,15 @@ To start using py3Dmol, load one of these modules using a `module load` command module load py3Dmol/2.0.1.post1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |py3Dmol/2.0.1.post1-GCCcore-11.3.0|x|-|x|-|x|-| + + +### py3Dmol/2.0.1.post1-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +py3Dmol-2.0.1.post1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyBigWig.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyBigWig.md index d5254bb6b8f5..cbb7433b05bd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyBigWig.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyBigWig.md @@ -6,6 +6,10 @@ hide: pyBigWig ======== + +A python extension, written in C, for quick access to bigBed files and access to and creation of bigWig files. + +https://github.com/deeptools/pyBigWig # Available modules @@ -17,7 +21,7 @@ To start using pyBigWig, load one of these modules using a `module load` command module load pyBigWig/0.3.18-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyEGA3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyEGA3.md index de1ed98dac3d..072582f137da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyEGA3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyEGA3.md @@ -6,6 +6,10 @@ hide: pyEGA3 ====== + +A basic Python-based EGA download client + +https://github.com/EGA-archive/ega-download-client # Available modules @@ -17,9 +21,22 @@ To start using pyEGA3, load one of these modules using a `module load` command l module load pyEGA3/5.0.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pyEGA3/5.0.2-GCCcore-12.3.0|x|x|x|x|x|x| |pyEGA3/4.0.0-GCCcore-11.2.0|x|x|x|-|x|x| + + +### pyEGA3/5.0.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +htsget-0.2.6, humanize-4.8.0, pyEGA3-5.0.2, urllib3-1.26.18 + +### pyEGA3/4.0.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +htsget-0.2.5, humanize-4.0.0, pyEGA3-4.0.0, urllib3-1.26.9 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyGenomeTracks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyGenomeTracks.md index 1d4c8128ea64..459df103a5ac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyGenomeTracks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyGenomeTracks.md @@ -6,6 +6,10 @@ hide: pyGenomeTracks ============== + +pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. + +https://pygenometracks.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using pyGenomeTracks, load one of these modules using a `module load` c module load pyGenomeTracks/3.8-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pyGenomeTracks/3.8-foss-2022a|x|x|x|x|x|x| |pyGenomeTracks/3.7-foss-2021b|x|x|x|-|x|x| + + +### pyGenomeTracks/3.8-foss-2022a + +This is a list of extensions included in the module: + +argcomplete-2.0.0, argh-0.27.2, gffutils-0.11.1, pyGenomeTracks-3.8, pypairix-0.3.7 + +### pyGenomeTracks/3.7-foss-2021b + +This is a list of extensions included in the module: + +argcomplete-2.0.0, argh-0.26.2, asciitree-0.3.3, cooler-0.8.11, cytoolz-0.10.1, dill-0.3.5.1, gffutils-0.11.0, HiCMatrix-15, multiprocess-0.70.13, pyGenomeTracks-3.7, pypairix-0.3.7, toolz-0.12.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pySCENIC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pySCENIC.md index b068ac5ffb23..c72282a9a3a7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pySCENIC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pySCENIC.md @@ -6,6 +6,10 @@ hide: pySCENIC ======== + +pySCENIC is a lightning-fast python implementation of the SCENICpipeline (Single-Cell rEgulatory Network Inference and Clustering) which enablesbiologists to infer transcription factors, gene regulatory networks andcell types from single-cell RNA-seq data. + +https://github.com/aertslab/pySCENIC # Available modules @@ -17,9 +21,22 @@ To start using pySCENIC, load one of these modules using a `module load` command module load pySCENIC/0.10.3-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pySCENIC/0.10.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x| |pySCENIC/0.10.3-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### pySCENIC/0.10.3-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +arboreto-0.1.5, boltons-20.2.0, cytoolz-0.10.1, dill-0.3.2, frozendict-1.2, interlap-0.2.6, loompy-3.0.6, multiprocessing_on_dill-3.5.0a4, numpy_groupies-0.9.10, pyscenic-0.10.3, umap-learn-0.4.6 + +### pySCENIC/0.10.3-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +arboreto-0.1.5, boltons-20.2.0, cytoolz-0.10.1, dill-0.3.2, frozendict-1.2, interlap-0.2.6, loompy-3.0.6, multiprocessing_on_dill-3.5.0a4, numpy_groupies-0.9.10, pyscenic-0.10.3, umap-learn-0.4.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyWannier90.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyWannier90.md index 49014454113e..160e52299a1e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyWannier90.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyWannier90.md @@ -6,6 +6,10 @@ hide: pyWannier90 =========== + +A Wannier90 Python interface for VASP and PySCF + +https://github.com/hungpham2017/pyWannier90 # Available modules @@ -17,7 +21,7 @@ To start using pyWannier90, load one of these modules using a `module load` comm module load pyWannier90/2021-12-07-gomkl-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pybedtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pybedtools.md index 883bec9a2e5c..b223efce6723 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pybedtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pybedtools.md @@ -6,6 +6,10 @@ hide: pybedtools ========== + +pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python. + +https://daler.github.io/pybedtools # Available modules @@ -17,7 +21,7 @@ To start using pybedtools, load one of these modules using a `module load` comma module load pybedtools/0.9.0-GCC-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,16 @@ module load pybedtools/0.9.0-GCC-12.2.0 |pybedtools/0.8.2-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x| |pybedtools/0.8.2-GCC-10.2.0|-|x|x|x|x|x| |pybedtools/0.8.1-foss-2019b|-|x|x|-|x|x| + + +### pybedtools/0.9.0-GCC-12.2.0 + +This is a list of extensions included in the module: + +pybedtools-0.9.0 + +### pybedtools/0.9.0-GCC-11.3.0 + +This is a list of extensions included in the module: + +pybedtools-0.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pybind11.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pybind11.md index 10f209fb2800..7b8bbf053aea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pybind11.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pybind11.md @@ -6,6 +6,10 @@ hide: pybind11 ======== + +pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code. + +https://pybind11.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using pybind11, load one of these modules using a `module load` command module load pybind11/2.11.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pycocotools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pycocotools.md index a626382de9a4..1256f73babf4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pycocotools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pycocotools.md @@ -6,6 +6,10 @@ hide: pycocotools =========== + +Official APIs for the MS-COCO dataset + +https://pypi.org/project/pycocotools # Available modules @@ -17,7 +21,7 @@ To start using pycocotools, load one of these modules using a `module load` comm module load pycocotools/2.0.4-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pycodestyle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pycodestyle.md index 166a99398a43..593f89eaa914 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pycodestyle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pycodestyle.md @@ -6,6 +6,10 @@ hide: pycodestyle =========== + +pycodestyle is a tool to check your Python code against some of the style conventions in PEP 8. + +https://pycodestyle.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using pycodestyle, load one of these modules using a `module load` comm module load pycodestyle/2.11.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pydantic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pydantic.md index ace87be84873..3baea4f3bba8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pydantic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pydantic.md @@ -6,6 +6,10 @@ hide: pydantic ======== + +Data validation and settings management using Python type hinting. + +https://github.com/samuelcolvin/pydantic # Available modules @@ -17,7 +21,7 @@ To start using pydantic, load one of these modules using a `module load` command module load pydantic/2.5.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,28 @@ module load pydantic/2.5.3-GCCcore-12.3.0 |pydantic/2.5.3-GCCcore-12.2.0|x|x|x|x|x|x| |pydantic/1.10.13-GCCcore-12.3.0|x|x|x|x|x|x| |pydantic/1.10.4-GCCcore-11.3.0|x|x|x|x|x|x| + + +### pydantic/2.5.3-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +annotated_types-0.6.0, pydantic-2.5.3, pydantic_core-2.14.6 + +### pydantic/2.5.3-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +annotated_types-0.6.0, pydantic-2.5.3, pydantic_core-2.14.6 + +### pydantic/1.10.13-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +pydantic-1.10.13 + +### pydantic/1.10.4-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +pydantic-1.10.4, typing_extensions-4.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pydicom.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pydicom.md index a3cd0d158b83..6a8af493785a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pydicom.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pydicom.md @@ -6,6 +6,10 @@ hide: pydicom ======= + +Pure python package for DICOM medical file reading and writing. + +https://github.com/pydicom/pydicom # Available modules @@ -17,7 +21,7 @@ To start using pydicom, load one of these modules using a `module load` command module load pydicom/2.3.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pydot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pydot.md index e2fd8e92ae57..978a8a04e6ad 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pydot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pydot.md @@ -6,6 +6,10 @@ hide: pydot ===== + +Python interface to Graphviz's Dot language. + +https://github.com/pydot/pydot # Available modules @@ -17,7 +21,7 @@ To start using pydot, load one of these modules using a `module load` command li module load pydot/1.4.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyfaidx.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyfaidx.md index e9f84804cc54..72dab5e2fe15 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyfaidx.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyfaidx.md @@ -6,6 +6,10 @@ hide: pyfaidx ======= + +pyfaidx: efficient pythonic random access to fasta subsequences + +https://pypi.python.org/pypi/pyfaidx # Available modules @@ -17,7 +21,7 @@ To start using pyfaidx, load one of these modules using a `module load` command module load pyfaidx/0.7.2.1-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyfasta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyfasta.md index baf60240bf2e..879c0d3ad62e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyfasta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyfasta.md @@ -6,6 +6,10 @@ hide: pyfasta ======= + +fast, memory-efficient, pythonic (and command-line) access to fasta sequence files + +https://pypi.org/project/pyfasta/ # Available modules @@ -17,7 +21,7 @@ To start using pyfasta, load one of these modules using a `module load` command module load pyfasta/0.5.2-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pygmo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pygmo.md index 9e00a025dd5c..6295200d0336 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pygmo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pygmo.md @@ -6,6 +6,10 @@ hide: pygmo ===== + +pygmo is a scientific Python library for massively parallel optimization. + +https://esa.github.io/pygmo2 # Available modules @@ -17,8 +21,15 @@ To start using pygmo, load one of these modules using a `module load` command li module load pygmo/2.16.1-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pygmo/2.16.1-foss-2020b|-|x|x|x|x|x| + + +### pygmo/2.16.1-foss-2020b + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, dill-0.3.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pygraphviz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pygraphviz.md index a69a9acadab3..c9a479e61fa7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pygraphviz.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pygraphviz.md @@ -6,6 +6,10 @@ hide: pygraphviz ========== + +PyGraphviz is a Python interface to the Graphviz graph layout and visualization package. With PyGraphviz you can create, edit, read, write, and draw graphs using Python to access the Graphviz graph data structure and layout algorithms. + +https://pygraphviz.github.io # Available modules @@ -17,8 +21,15 @@ To start using pygraphviz, load one of these modules using a `module load` comma module load pygraphviz/1.11-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pygraphviz/1.11-GCCcore-12.3.0|x|x|x|x|x|x| + + +### pygraphviz/1.11-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +pygraphviz-1.11 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyiron.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyiron.md index 4066c9517bec..b2de2c56b72f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyiron.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyiron.md @@ -6,6 +6,10 @@ hide: pyiron ====== + +An integrated development environment (IDE) for computational materials science. + +https://github.com/pyiron/pyiron # Available modules @@ -17,7 +21,7 @@ To start using pyiron, load one of these modules using a `module load` command l module load pyiron/0.2.6-hpcugent-2023-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -27,3 +31,40 @@ module load pyiron/0.2.6-hpcugent-2023-intel-2020a-Python-3.8.2 |pyiron/0.2.6-hpcugent-2022-intel-2020a-Python-3.8.2|-|x|x|-|x|-| |pyiron/0.2.6-hpcugent-2021-intel-2020a-Python-3.8.2|-|x|x|-|x|-| |pyiron/0.2.6-hpcugent-2020-intel-2020a-Python-3.8.2|-|x|x|-|x|-| + + +### pyiron/0.2.6-hpcugent-2023-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.5, defusedxml-0.7.1, dill-0.3.5.1, gitdb-4.0.9, GitPython-3.1.27, greenlet-1.1.3, h5io-0.1.7, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2023, pysqa-0.0.3, seekpath-2.0.1, smmap-5.0.0, SQLAlchemy-1.4.41 + +### pyiron/0.2.6-hpcugent-2022c-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2022c, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19 + +### pyiron/0.2.6-hpcugent-2022b-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2022b, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19 + +### pyiron/0.2.6-hpcugent-2022-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2022, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19 + +### pyiron/0.2.6-hpcugent-2021-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2021, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19 + +### pyiron/0.2.6-hpcugent-2020-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2020, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pymatgen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pymatgen.md index f06e04cff446..c509c0ae3860 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pymatgen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pymatgen.md @@ -6,6 +6,10 @@ hide: pymatgen ======== + +Python Materials Genomics is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. + +https://pypi.python.org/pypi/pymatgen # Available modules @@ -17,9 +21,22 @@ To start using pymatgen, load one of these modules using a `module load` command module load pymatgen/2022.9.21-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pymatgen/2022.9.21-foss-2022a|x|x|x|-|x|x| |pymatgen/2022.0.4-foss-2020b|-|x|x|x|x|x| + + +### pymatgen/2022.9.21-foss-2022a + +This is a list of extensions included in the module: + +emmet-core-0.36.8, latexcodec-2.0.1, monty-2022.9.9, mp-api-0.27.5, palettable-3.3.0, pybtex-0.24.0, pydantic-1.10.2, pymatgen-2022.9.21, spglib-1.16.5, uncertainties-3.1.7 + +### pymatgen/2022.0.4-foss-2020b + +This is a list of extensions included in the module: + +monty-2021.3.3, numpy-1.20.1, palettable-3.3.0, pymatgen-2022.0.4, ruamel.yaml-0.16.13, ruamel.yaml.clib-0.2.2, uncertainties-3.1.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pymbar.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pymbar.md index 2ec354b9488a..68197d0d912c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pymbar.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pymbar.md @@ -6,6 +6,10 @@ hide: pymbar ====== + +The pymbar package contains the pymbar suite of tools for the analysis ofsimulated and experimental data with the multistate Bennett acceptanceratio (MBAR) estimator. + +http://pymbar.readthedocs.io/en/master/ # Available modules @@ -17,7 +21,7 @@ To start using pymbar, load one of these modules using a `module load` command l module load pymbar/3.0.3-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pymca.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pymca.md index e2e76a2f7abc..b33c8c8d8454 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pymca.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pymca.md @@ -6,6 +6,10 @@ hide: pymca ===== + +The PyMca X-Ray Fluorescence Toolkit, including PyMca5 and fisx. + +https://github.com/vasole/pymca # Available modules @@ -17,8 +21,15 @@ To start using pymca, load one of these modules using a `module load` command li module load pymca/5.6.3-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pymca/5.6.3-foss-2020b|-|x|x|x|x|x| + + +### pymca/5.6.3-foss-2020b + +This is a list of extensions included in the module: + +fisx-1.2.0, pymca-5.6.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyobjcryst.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyobjcryst.md index 263abaa53492..9ce9db358843 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyobjcryst.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyobjcryst.md @@ -6,6 +6,10 @@ hide: pyobjcryst ========== + +Python bindings to ObjCryst++, the Object-Oriented Crystallographic Library. + +https://github.com/diffpy/pyobjcryst # Available modules @@ -17,7 +21,7 @@ To start using pyobjcryst, load one of these modules using a `module load` comma module load pyobjcryst/2.2.1-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyodbc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyodbc.md index b50b458a819a..3f348ed8f8ab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyodbc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyodbc.md @@ -6,6 +6,10 @@ hide: pyodbc ====== + +pyodbc is an open source Python module that makes accessing ODBC databases simple. It implements the DB API 2.0 specification but is packed with even more Pythonic convenience. + +https://github.com/mkleehammer/pyodbc # Available modules @@ -17,8 +21,15 @@ To start using pyodbc, load one of these modules using a `module load` command l module load pyodbc/4.0.39-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pyodbc/4.0.39-foss-2022b|x|x|x|x|x|x| + + +### pyodbc/4.0.39-foss-2022b + +This is a list of extensions included in the module: + +pyodbc-4.0.39 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md index 117724bc230c..fb7708013848 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md @@ -6,6 +6,10 @@ hide: pyparsing ========= + +The pyparsing module is an alternative approach to creating andexecuting simple grammars, vs. the traditional lex/yacc approach, or the use ofregular expressions. The pyparsing module provides a library of classes thatclient code uses to construct the grammar directly in Python code. + +https://github.com/pyparsing/pyparsing # Available modules @@ -17,7 +21,7 @@ To start using pyparsing, load one of these modules using a `module load` comman module load pyparsing/2.4.6-GCCcore-8.3.0-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyproj.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyproj.md index 617a457f22a1..da34d148b1ab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyproj.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyproj.md @@ -6,6 +6,10 @@ hide: pyproj ====== + +Python interface to PROJ4 library for cartographic transformations + +https://pyproj4.github.io/pyproj # Available modules @@ -17,7 +21,7 @@ To start using pyproj, load one of these modules using a `module load` command l module load pyproj/3.6.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-api.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-api.md index 455d266e7c72..a91a07f14c9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-api.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-api.md @@ -6,6 +6,10 @@ hide: pyro-api ======== + +Pyro is a flexible, scalable deep probabilistic programming library built on PyTorch. + +https://github.com/pyro-ppl/pyro-api # Available modules @@ -17,7 +21,7 @@ To start using pyro-api, load one of these modules using a `module load` command module load pyro-api/0.1.2-fosscuda-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-ppl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-ppl.md index 506f4938f76e..a686d4aee03d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-ppl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-ppl.md @@ -6,6 +6,10 @@ hide: pyro-ppl ======== + +Pyro is a flexible, scalable deep probabilistic programming library built on PyTorch. + +https://github.com/pyro-ppl/pyro # Available modules @@ -17,10 +21,29 @@ To start using pyro-ppl, load one of these modules using a `module load` command module load pyro-ppl/1.8.4-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pyro-ppl/1.8.4-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| |pyro-ppl/1.8.4-foss-2022a|x|x|x|x|x|x| |pyro-ppl/1.5.2-fosscuda-2020b|-|-|-|-|x|-| + + +### pyro-ppl/1.8.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +opt_einsum-3.3.0, pyro-api-0.1.2, pyro-ppl-1.8.4 + +### pyro-ppl/1.8.4-foss-2022a + +This is a list of extensions included in the module: + +opt_einsum-3.3.0, pyro-api-0.1.2, pyro-ppl-1.8.4 + +### pyro-ppl/1.5.2-fosscuda-2020b + +This is a list of extensions included in the module: + +opt_einsum-3.3.0, pyro-ppl-1.5.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pysamstats.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pysamstats.md index 3d075746fe3e..2db83bb8e590 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pysamstats.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pysamstats.md @@ -6,6 +6,10 @@ hide: pysamstats ========== + +A Python utility for calculating statisticsagainst genome positions based on sequence alignments from a SAM or BAM file. + +https://github.com/alimanfoo/pysamstats # Available modules @@ -17,7 +21,7 @@ To start using pysamstats, load one of these modules using a `module load` comma module load pysamstats/1.1.2-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pysndfx.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pysndfx.md index 29c58bcc0266..84dc1a9e6d08 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pysndfx.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pysndfx.md @@ -6,6 +6,10 @@ hide: pysndfx ======= + +A lightweight Python wrapper for SoX - Sound eXchange. Supported effects range from EQ and compression to phasers, reverb and pitch shifters. + +https://github.com/carlthome/python-audio-effects # Available modules @@ -17,7 +21,7 @@ To start using pysndfx, load one of these modules using a `module load` command module load pysndfx/0.3.6-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyspoa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyspoa.md index 3c29d096c706..806ff1e2ec9b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyspoa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyspoa.md @@ -6,6 +6,10 @@ hide: pyspoa ====== + +Python bindings to spoa. + +https://github.com/nanoporetech/pyspoa # Available modules @@ -17,7 +21,7 @@ To start using pyspoa, load one of these modules using a `module load` command l module load pyspoa/0.0.9-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-flakefinder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-flakefinder.md index 37f9042ccbcd..48f11c1e9dd4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-flakefinder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-flakefinder.md @@ -6,6 +6,10 @@ hide: pytest-flakefinder ================== + +Runs tests multiple times to expose flakiness. + +https://github.com/dropbox/pytest-flakefinder # Available modules @@ -17,7 +21,7 @@ To start using pytest-flakefinder, load one of these modules using a `module loa module load pytest-flakefinder/1.1.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-rerunfailures.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-rerunfailures.md index e260b4295bc4..6cbc2ce3fb49 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-rerunfailures.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-rerunfailures.md @@ -6,6 +6,10 @@ hide: pytest-rerunfailures ==================== + +pytest plugin to re-run tests to eliminate flaky failures. + +https://github.com/pytest-dev/pytest-rerunfailures # Available modules @@ -17,7 +21,7 @@ To start using pytest-rerunfailures, load one of these modules using a `module l module load pytest-rerunfailures/12.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-shard.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-shard.md index 1d674f8bf159..adb75aaf028b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-shard.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-shard.md @@ -6,6 +6,10 @@ hide: pytest-shard ============ + +pytest plugin to support parallelism across multiple machines.Shards tests based on a hash of their test name enabling easy parallelism across machines,suitable for a wide variety of continuous integration services.Tests are split at the finest level of granularity, individual test cases,enabling parallelism even if all of your tests are in a single file(or even single parameterized test method). + +https://github.com/AdamGleave/pytest-shard # Available modules @@ -17,7 +21,7 @@ To start using pytest-shard, load one of these modules using a `module load` com module load pytest-shard/0.1.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-xdist.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-xdist.md index 9246f93056c5..aa5ad1464af2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-xdist.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-xdist.md @@ -6,6 +6,10 @@ hide: pytest-xdist ============ + +xdist: pytest distributed testing pluginThe pytest-xdist plugin extends pytest with some unique test execution modes: * test run parallelization: if you have multiple CPUs or hosts you can use those for a combined test run. This allows to speed up development or to use special resources of remote machines. * --looponfail: run your tests repeatedly in a subprocess. After each run pytest waits until a file in your project changes and then re-runs the previously failing tests. This is repeated until all tests pass after which again a full run is performed. * Multi-Platform coverage: you can specify different Python interpreters or different platforms and run tests in parallel on all of them.Before running tests remotely, pytest efficiently “rsyncs” yourprogram source code to the remote place. All test results are reportedback and displayed to your local terminal. You may specify differentPython versions and interpreters. + +https://github.com/pytest-dev/pytest-xdist # Available modules @@ -17,7 +21,7 @@ To start using pytest-xdist, load one of these modules using a `module load` com module load pytest-xdist/3.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -26,3 +30,34 @@ module load pytest-xdist/3.3.1-GCCcore-12.3.0 |pytest-xdist/2.5.0-GCCcore-11.2.0|x|-|x|-|x|-| |pytest-xdist/2.3.0-GCCcore-10.3.0|x|x|x|x|x|x| |pytest-xdist/2.3.0-GCCcore-10.2.0|x|x|x|x|x|x| + + +### pytest-xdist/3.3.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +apipkg-3.0.2, execnet-2.0.2, pytest-xdist-3.3.1 + +### pytest-xdist/2.5.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +apipkg-1.5, execnet-1.9.0, pytest-forked-1.4.0, pytest-xdist-2.5.0 + +### pytest-xdist/2.5.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +apipkg-1.5, execnet-1.9.0, pytest-forked-1.4.0, pytest-xdist-2.5.0 + +### pytest-xdist/2.3.0-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +apipkg-1.5, execnet-1.9.0, pytest-forked-1.3.0, pytest-xdist-2.3.0 + +### pytest-xdist/2.3.0-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +apipkg-1.5, execnet-1.9.0, pytest-forked-1.3.0, pytest-xdist-2.3.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest.md index b09a71211771..d1de89bcd4a8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest.md @@ -6,6 +6,10 @@ hide: pytest ====== + +The pytest framework makes it easy to write small,readable tests, and can scale to support complex functional testing forapplications and libraries. + +https://docs.pytest.org/en/latest/ # Available modules @@ -17,8 +21,15 @@ To start using pytest, load one of these modules using a `module load` command l module load pytest/7.4.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pytest/7.4.2-GCCcore-12.3.0|x|x|x|x|x|x| + + +### pytest/7.4.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +elementpath-4.1.5, flit-core-3.9.0, hypothesis-6.88.1, pytest-7.4.2, setuptools-scm-8.0.4, xmlschema-2.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pythermalcomfort.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pythermalcomfort.md index 574d410700a5..de057828d290 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pythermalcomfort.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pythermalcomfort.md @@ -6,6 +6,10 @@ hide: pythermalcomfort ================ + +Package to calculate several thermal comfort indices (e.g. PMV, PPD, SET, adaptive) and convert physical variables. + +https://github.com/CenterForTheBuiltEnvironment/pythermalcomfort # Available modules @@ -17,7 +21,7 @@ To start using pythermalcomfort, load one of these modules using a `module load` module load pythermalcomfort/2.8.10-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-Levenshtein.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-Levenshtein.md index 079b1f9e8861..2fbc3a02ebc7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-Levenshtein.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-Levenshtein.md @@ -6,6 +6,10 @@ hide: python-Levenshtein ================== + +Python extension for computing string edit distances and similarities. + +https://pypi.org/project/python-Levenshtein/ # Available modules @@ -17,7 +21,7 @@ To start using python-Levenshtein, load one of these modules using a `module loa module load python-Levenshtein/0.12.1-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-igraph.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-igraph.md index 6ad4c817b068..40fc6ac6fe1e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-igraph.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-igraph.md @@ -6,6 +6,10 @@ hide: python-igraph ============= + +Python interface to the igraph high performance graph library, primarily aimed at complex network research and analysis. + +https://igraph.org/python # Available modules @@ -17,7 +21,7 @@ To start using python-igraph, load one of these modules using a `module load` co module load python-igraph/0.11.4-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,46 @@ module load python-igraph/0.11.4-foss-2023a |python-igraph/0.9.0-fosscuda-2020b|-|-|-|-|x|-| |python-igraph/0.9.0-foss-2020b|-|x|x|x|x|x| |python-igraph/0.8.0-foss-2020a|-|x|x|-|x|x| + + +### python-igraph/0.11.4-foss-2023a + +This is a list of extensions included in the module: + +cairocffi-1.6.1, igraph-0.11.4, texttable-1.7.0 + +### python-igraph/0.10.3-foss-2022a + +This is a list of extensions included in the module: + +igraph-0.10.3, texttable-1.6.7 + +### python-igraph/0.9.8-foss-2021b + +This is a list of extensions included in the module: + +igraph-0.9.8, texttable-1.6.4 + +### python-igraph/0.9.6-foss-2021a + +This is a list of extensions included in the module: + +python-igraph-0.9.6, texttable-1.6.4 + +### python-igraph/0.9.0-fosscuda-2020b + +This is a list of extensions included in the module: + +python-igraph-0.9.0, texttable-1.6.3 + +### python-igraph/0.9.0-foss-2020b + +This is a list of extensions included in the module: + +python-igraph-0.9.0, texttable-1.6.3 + +### python-igraph/0.8.0-foss-2020a + +This is a list of extensions included in the module: + +python-igraph-0.8.0, texttable-1.6.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-irodsclient.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-irodsclient.md index 07e7c6410b4d..734b46fdec03 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-irodsclient.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-irodsclient.md @@ -6,6 +6,10 @@ hide: python-irodsclient ================== + +A python API for iRODS + +https://github.com/irods/python-irodsclient # Available modules @@ -17,9 +21,22 @@ To start using python-irodsclient, load one of these modules using a `module loa module load python-irodsclient/1.1.4-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |python-irodsclient/1.1.4-GCCcore-11.2.0|x|x|x|-|x|x| |python-irodsclient/1.1.4-GCCcore-10.3.0|x|x|x|-|x|x| + + +### python-irodsclient/1.1.4-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +defusedxml-0.7.1, prettytable-3.3.0, python-irodsclient-1.1.4 + +### python-irodsclient/1.1.4-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +defusedxml-0.7.1, prettytable-3.3.0, python-irodsclient-1.1.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-isal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-isal.md index 8291f0bd2f14..1e2a26e40063 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-isal.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-isal.md @@ -6,6 +6,10 @@ hide: python-isal =========== + +Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library. + +https://github.com/pycompression/python-isal # Available modules @@ -17,7 +21,7 @@ To start using python-isal, load one of these modules using a `module load` comm module load python-isal/1.1.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-louvain.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-louvain.md index dc81b43be166..377cba88db42 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-louvain.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-louvain.md @@ -6,6 +6,10 @@ hide: python-louvain ============== + +Louvain algorithm for community detection + +https://pypi.org/project/python-louvain # Available modules @@ -17,7 +21,7 @@ To start using python-louvain, load one of these modules using a `module load` c module load python-louvain/0.16-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-parasail.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-parasail.md index 4bc891da4e09..f1583deb477c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-parasail.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-parasail.md @@ -6,6 +6,10 @@ hide: python-parasail =============== + +Python Bindings for the Parasail C Library + +https://github.com/jeffdaily/parasail-python # Available modules @@ -17,7 +21,7 @@ To start using python-parasail, load one of these modules using a `module load` module load python-parasail/1.3.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-telegram-bot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-telegram-bot.md index 2d102aa26b7d..776b213d8d01 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-telegram-bot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-telegram-bot.md @@ -6,6 +6,10 @@ hide: python-telegram-bot =================== + +This library provides a pure Python, asynchronous interface for the Telegram Bot API. It's compatible with Python versions 3.7+. + +https://python-telegram-bot.org/ # Available modules @@ -17,8 +21,15 @@ To start using python-telegram-bot, load one of these modules using a `module lo module load python-telegram-bot/20.0a0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |python-telegram-bot/20.0a0-GCCcore-10.2.0|x|x|x|-|x|x| + + +### python-telegram-bot/20.0a0-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +anyio-3.6.2, APScheduler-3.9.1, backports.zoneinfo-0.2.1, cachetools-5.0.0, charset-normalizer-2.1.1, flit_core-3.7.1, h11-0.12.0, httpcore-0.14.7, httpx-0.22.0, idna-3.4, python-telegram-bot-20.0a0, pytz_deprecation_shim-0.1.0.post0, requests-2.28.1, rfc3986-1.5.0, sniffio-1.3.0, tornado-6.1, tzdata-2022.5, tzlocal-4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-weka-wrapper3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-weka-wrapper3.md index 09aac4b91f7d..4c6f3120e0ae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-weka-wrapper3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-weka-wrapper3.md @@ -6,6 +6,10 @@ hide: python-weka-wrapper3 ==================== + +Python3 wrapper for the Weka Machine Learning Workbench + +https://github.com/fracpete/python-weka-wrapper3 # Available modules @@ -17,8 +21,15 @@ To start using python-weka-wrapper3, load one of these modules using a `module l module load python-weka-wrapper3/0.1.11-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |python-weka-wrapper3/0.1.11-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### python-weka-wrapper3/0.1.11-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +javabridge-1.0.18, python-weka-wrapper3-0.1.11 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pythran.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pythran.md index 89186646b36d..c9480d542b69 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pythran.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pythran.md @@ -6,6 +6,10 @@ hide: pythran ======= + +Pythran is an ahead of time compiler for a subset of the Python language,with a focus on scientific computing. It takes a Python module annotated with a few interface descriptionand turns it into a native Python module with the same interface, but (hopefully) faster. + +https://pythran.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using pythran, load one of these modules using a `module load` command module load pythran/0.9.4.post1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |pythran/0.9.4.post1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### pythran/0.9.4.post1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +beniget-0.2.0, gast-0.3.2, ply-3.11, pythran-0.9.4.post1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/qcat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/qcat.md index 1f95571d665c..b283cd7ca829 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/qcat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/qcat.md @@ -6,6 +6,10 @@ hide: qcat ==== + +qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files + +https://github.com/nanoporetech/qcat/releases # Available modules @@ -17,7 +21,7 @@ To start using qcat, load one of these modules using a `module load` command lik module load qcat/1.1.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/qnorm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/qnorm.md index 6344160c94cf..0c89d127c419 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/qnorm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/qnorm.md @@ -6,6 +6,10 @@ hide: qnorm ===== + +Fast-ish (and correct!) quantile normalization in Python + +https://github.com/Maarten-vd-Sande/qnorm # Available modules @@ -17,7 +21,7 @@ To start using qnorm, load one of these modules using a `module load` command li module load qnorm/0.8.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rMATS-turbo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rMATS-turbo.md index 257547795bdc..6894463139f6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rMATS-turbo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rMATS-turbo.md @@ -6,6 +6,10 @@ hide: rMATS-turbo =========== + +rMATS turbo is the C/Cython version of rMATS (refer to http://rnaseq-mats.sourceforge.net). + +https://github.com/Xinglab/rmats-turbo # Available modules @@ -17,7 +21,7 @@ To start using rMATS-turbo, load one of these modules using a `module load` comm module load rMATS-turbo/4.1.1-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/radian.md b/mkdocs/docs/HPC/only/gent/available_software/detail/radian.md index 26f3f79e5579..893881752323 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/radian.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/radian.md @@ -6,6 +6,10 @@ hide: radian ====== + +radian is an alternative console for the R program with multiline editing and rich syntax highlight. + +https://github.com/randy3k/radian # Available modules @@ -17,8 +21,15 @@ To start using radian, load one of these modules using a `module load` command l module load radian/0.6.9-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |radian/0.6.9-foss-2022b|x|x|x|x|x|x| + + +### radian/0.6.9-foss-2022b + +This is a list of extensions included in the module: + +prompt-toolkit-3.0.43, radian-0.6.9, rchitect-0.4.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rasterio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rasterio.md index af7017b06875..cd28684bf023 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rasterio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rasterio.md @@ -6,6 +6,10 @@ hide: rasterio ======== + +Rasterio reads and writes geospatial raster data. + +https://github.com/mapbox/rasterio # Available modules @@ -17,10 +21,29 @@ To start using rasterio, load one of these modules using a `module load` command module load rasterio/1.3.8-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |rasterio/1.3.8-foss-2022b|x|x|x|x|x|x| |rasterio/1.2.10-foss-2021b|x|x|x|-|x|x| |rasterio/1.1.7-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### rasterio/1.3.8-foss-2022b + +This is a list of extensions included in the module: + +affine-2.4.0, click-plugins-1.1.1, cligj-0.7.2, rasterio-1.3.8, snuggs-1.4.7 + +### rasterio/1.2.10-foss-2021b + +This is a list of extensions included in the module: + +affine-2.3.1, boto3-1.24.3, botocore-1.27.3, click-plugins-1.1.1, cligj-0.7.2, jmespath-1.0.0, rasterio-1.2.10, s3transfer-0.6.0, snuggs-1.4.7 + +### rasterio/1.1.7-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +affine-2.3.0, attrs-20.2.0, boto3-1.15.16, botocore-1.18.16, click-7.1.2, click-plugins-1.1.1, cligj-0.5.0, jmespath-0.10.0, rasterio-1.1.7, s3transfer-0.3.3, snuggs-1.4.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rasterstats.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rasterstats.md index f66c91fae692..668ad8e91f94 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rasterstats.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rasterstats.md @@ -6,6 +6,10 @@ hide: rasterstats =========== + +rasterstats is a Python module for summarizing geospatial raster datasets based on vector geometries. + +https://github.com/perrygeo/python-rasterstats # Available modules @@ -17,8 +21,15 @@ To start using rasterstats, load one of these modules using a `module load` comm module load rasterstats/0.15.0-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |rasterstats/0.15.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### rasterstats/0.15.0-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +affine-2.3.0, cligj-0.5.0, rasterstats-0.15.0, simplejson-3.17.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rclone.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rclone.md index 0f620260ee9a..cdd1f6c569ee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rclone.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rclone.md @@ -6,6 +6,10 @@ hide: rclone ====== + +Rclone is a command line program to sync files and directories to and from a variety of online storage services + +https://rclone.org # Available modules @@ -17,7 +21,7 @@ To start using rclone, load one of these modules using a `module load` command l module load rclone/1.65.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/re2c.md b/mkdocs/docs/HPC/only/gent/available_software/detail/re2c.md index a5402615e5a9..e5ca3d85e87f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/re2c.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/re2c.md @@ -6,6 +6,10 @@ hide: re2c ==== + +re2c is a free and open-source lexer generator for C and C++. Its main goal is generatingfast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of usingtraditional table-driven approach, re2c encodes the generated finite state automata directly in the formof conditional jumps and comparisons. + +https://re2c.org/ # Available modules @@ -17,7 +21,7 @@ To start using re2c, load one of these modules using a `module load` command lik module load re2c/3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/redis-py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/redis-py.md index ad04aa7d6627..2205a727c7a6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/redis-py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/redis-py.md @@ -6,6 +6,10 @@ hide: redis-py ======== + +The Python interface to the Redis key-value store. + +https://github.com/redis/redis-py # Available modules @@ -17,10 +21,29 @@ To start using redis-py, load one of these modules using a `module load` command module load redis-py/4.5.1-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |redis-py/4.5.1-foss-2022a|x|x|x|x|x|x| |redis-py/4.3.3-foss-2021b|x|x|x|-|x|x| |redis-py/4.3.1-foss-2021a|x|x|x|-|x|x| + + +### redis-py/4.5.1-foss-2022a + +This is a list of extensions included in the module: + +async-timeout-4.0.2, redis-py-4.5.1 + +### redis-py/4.3.3-foss-2021b + +This is a list of extensions included in the module: + +async-timeout-4.0.2, Deprecated-1.2.13, redis-py-4.3.3, wrapt-1.14.1 + +### redis-py/4.3.1-foss-2021a + +This is a list of extensions included in the module: + +async-timeout-4.0.2, Deprecated-1.2.13, redis-py-4.3.1, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/regionmask.md b/mkdocs/docs/HPC/only/gent/available_software/detail/regionmask.md index 26487738a05b..dc7a7915aa29 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/regionmask.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/regionmask.md @@ -6,6 +6,10 @@ hide: regionmask ========== + +regionmask creates masks of geographical regions. It determines to whichgeographic region each grid point belongs. + +https://regionmask.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using regionmask, load one of these modules using a `module load` comma module load regionmask/0.10.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |regionmask/0.10.0-foss-2022b|x|x|x|x|x|x| + + +### regionmask/0.10.0-foss-2022b + +This is a list of extensions included in the module: + +regionmask-0.10.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/request.md b/mkdocs/docs/HPC/only/gent/available_software/detail/request.md index 478875402e43..b4405d40c736 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/request.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/request.md @@ -6,6 +6,10 @@ hide: request ======= + +Request is designed to be the simplest way possible to make http calls. It supports HTTPS and follows redirects by default. + +https://github.com/request/request/ # Available modules @@ -17,7 +21,7 @@ To start using request, load one of these modules using a `module load` command module load request/2.88.1-fosscuda-2020b-nodejs-12.19.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rethinking.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rethinking.md index 28183cc5d633..2f7b1cb91735 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rethinking.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rethinking.md @@ -6,6 +6,10 @@ hide: rethinking ========== + +R package that contains tools for conducting both quick quadratic approximation of the posterior distribution as well as Hamiltonian Monte Carlo. + +https://github.com/rmcelreath/rethinking # Available modules @@ -17,7 +21,7 @@ To start using rethinking, load one of these modules using a `module load` comma module load rethinking/2.40-20230914-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rgdal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rgdal.md index f0de39b03281..2b06bda5ce13 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rgdal.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rgdal.md @@ -6,6 +6,10 @@ hide: rgdal ===== + +Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4 and <= 2.5.0) and access to projection/transformation operations from the 'PROJ.4' library. + +https://rgdal.r-forge.r-project.org/ # Available modules @@ -17,7 +21,7 @@ To start using rgdal, load one of these modules using a `module load` command li module load rgdal/1.5-23-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rgeos.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rgeos.md index 3017bf8476bc..a97c76f05d56 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rgeos.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rgeos.md @@ -6,6 +6,10 @@ hide: rgeos ===== + +R interface to Geometry Engine - Open Source (GEOS) using the C API for topology operations on geometries + +https://cran.r-project.org/web/packages/rgeos/ # Available modules @@ -17,7 +21,7 @@ To start using rgeos, load one of these modules using a `module load` command li module load rgeos/0.5-5-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rickflow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rickflow.md index 4f11ba3fda12..fea6150151d7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rickflow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rickflow.md @@ -6,6 +6,10 @@ hide: rickflow ======== + +Running and Analyzing OpenMM Jobs + +https://gitlab.com/Olllom/rickflow # Available modules @@ -17,9 +21,22 @@ To start using rickflow, load one of these modules using a `module load` command module load rickflow/0.7.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |rickflow/0.7.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |rickflow/0.7.0-20200529-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### rickflow/0.7.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mpiplus-0.0.1, openmmtools-0.19.0, pymbar-3.0.5, rickflow-0.7.0 + +### rickflow/0.7.0-20200529-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mpiplus-0.0.1, openmmtools-0.19.0, pymbar-3.0.5, rickflow-0.7.0-20200529 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rioxarray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rioxarray.md index 89516902a150..a139febfc363 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rioxarray.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rioxarray.md @@ -6,6 +6,10 @@ hide: rioxarray ========= + +geospatial xarray extension powered by rasterio + +https://github.com/corteva/rioxarray # Available modules @@ -17,7 +21,7 @@ To start using rioxarray, load one of these modules using a `module load` comman module load rioxarray/0.11.1-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rjags.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rjags.md index 0440e52b7cf0..2b765079b88b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rjags.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rjags.md @@ -6,6 +6,10 @@ hide: rjags ===== + +The rjags package is an interface to the JAGS library. + +https://cran.r-project.org/web/packages/rjags # Available modules @@ -17,7 +21,7 @@ To start using rjags, load one of these modules using a `module load` command li module load rjags/4-13-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rmarkdown.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rmarkdown.md index 9a475c248b34..7b14d46d091f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rmarkdown.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rmarkdown.md @@ -6,6 +6,10 @@ hide: rmarkdown ========= + +Convert R Markdown documents into a variety of formats. + +https://cran.r-project.org/web/packages/rmarkdown # Available modules @@ -17,7 +21,7 @@ To start using rmarkdown, load one of these modules using a `module load` comman module load rmarkdown/2.20-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rpy2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rpy2.md index 912c60639d24..74e66489a14a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rpy2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rpy2.md @@ -6,6 +6,10 @@ hide: rpy2 ==== + +rpy2 is an interface to R running embedded in a Python process. + +https://rpy2.bitbucket.io/ # Available modules @@ -17,7 +21,7 @@ To start using rpy2, load one of these modules using a `module load` command lik module load rpy2/3.5.10-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,28 @@ module load rpy2/3.5.10-foss-2022a |rpy2/3.4.5-foss-2021b|x|x|x|x|x|x| |rpy2/3.4.5-foss-2021a|x|x|x|x|x|x| |rpy2/3.2.6-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### rpy2/3.5.10-foss-2022a + +This is a list of extensions included in the module: + +pytz-deprecation-shim-0.1.0.post0, rpy2-3.5.10, tzdata-2023.3, tzlocal-2.1 + +### rpy2/3.4.5-foss-2021b + +This is a list of extensions included in the module: + +backports-zoneinfo-0.2.1, cffi-1.15.0, pytz-deprecation-shim-0.1.0.post0, rpy2-3.4.5, simplegeneric-0.8.1, tzdata-2021.5, tzlocal-2.1 + +### rpy2/3.4.5-foss-2021a + +This is a list of extensions included in the module: + +backports-zoneinfo-0.2.1, cffi-1.15.1, pytz-deprecation-shim-0.1.0.post0, rpy2-3.4.5, simplegeneric-0.8.1, tzdata-2023.3, tzlocal-2.1 + +### rpy2/3.2.6-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cffi-1.14.0, rpy2-3.2.6, simplegeneric-0.8.1, tzlocal-2.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rstanarm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rstanarm.md index 86a82e8e7225..9f81b55d11ce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rstanarm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rstanarm.md @@ -6,6 +6,10 @@ hide: rstanarm ======== + +Estimates previously compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. + +https://r-forge.r-project.org/projects/rstanarm # Available modules @@ -17,8 +21,15 @@ To start using rstanarm, load one of these modules using a `module load` command module load rstanarm/2.19.3-foss-2019b-R-3.6.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |rstanarm/2.19.3-foss-2019b-R-3.6.2|-|x|x|-|x|x| + + +### rstanarm/2.19.3-foss-2019b-R-3.6.2 + +This is a list of extensions included in the module: + +bayesplot-1.7.1, BH-1.72.0-3, colourpicker-1.0, dygraphs-1.1.1.6, packrat-0.5.0, RcppParallel-4.4.4, rsconnect-0.8.16, rstanarm-2.19.3, rstantools-2.0.0, shinyjs-1.1, shinystan-2.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rstudio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rstudio.md index 3d5799594535..224e4b94da91 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rstudio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rstudio.md @@ -6,6 +6,10 @@ hide: rstudio ======= + +This RStudio Server version.RStudio is a set of integrated tools designed to help you be more productive with R.The server can be started with: rserver --server-daemonize=0 --www-port 8787 --rsession-which-r=$(which R) + +https://www.rstudio.com/ # Available modules @@ -17,7 +21,7 @@ To start using rstudio, load one of these modules using a `module load` command module load rstudio/1.3.959-foss-2020a-Java-11-R-4.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ruamel.yaml.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ruamel.yaml.md index 735c9d9f2b46..4801b69b1a7c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ruamel.yaml.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ruamel.yaml.md @@ -6,6 +6,10 @@ hide: ruamel.yaml =========== + +ruamel.yaml is a YAML 1.2 loader/dumper package for Python. + +https://sourceforge.net/projects/ruamel-yaml # Available modules @@ -17,10 +21,29 @@ To start using ruamel.yaml, load one of these modules using a `module load` comm module load ruamel.yaml/0.17.32-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |ruamel.yaml/0.17.32-GCCcore-12.3.0|x|x|x|x|x|x| |ruamel.yaml/0.17.21-GCCcore-11.3.0|x|x|x|x|x|x| |ruamel.yaml/0.17.21-GCCcore-11.2.0|x|x|x|-|x|x| + + +### ruamel.yaml/0.17.32-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +configobj-5.0.8, lz4-4.3.2, ruamel.yaml-0.17.32, ruamel.yaml.base-0.3.2, ruamel.yaml.clib-0.2.7, ruamel.yaml.cmd-0.6.5, ruamel.yaml.convert-0.3.2 + +### ruamel.yaml/0.17.21-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +configobj-5.0.6, lz4-4.0.2, ruamel.yaml-0.17.21, ruamel.yaml.base-0.3.0, ruamel.yaml.clib-0.2.6, ruamel.yaml.cmd-0.6.3, ruamel.yaml.convert-0.3.2 + +### ruamel.yaml/0.17.21-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +configobj-5.0.6, ruamel.yaml-0.17.21, ruamel.yaml.base-0.3.0, ruamel.yaml.clib-0.2.6, ruamel.yaml.cmd-0.5.10, ruamel.yaml.convert-0.3.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ruffus.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ruffus.md index 158c789df4c5..ef8f2db448c3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ruffus.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ruffus.md @@ -6,6 +6,10 @@ hide: ruffus ====== + +Ruffus is a Computation Pipeline library for python. It is open-sourced, powerful and user-friendly, and widely used in science and bioinformatics. + +http://www.ruffus.org.uk/ # Available modules @@ -17,7 +21,7 @@ To start using ruffus, load one of these modules using a `module load` command l module load ruffus/2.8.4-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/s3fs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/s3fs.md index b12e7cbdae59..17de8201e9fb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/s3fs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/s3fs.md @@ -6,6 +6,10 @@ hide: s3fs ==== + +S3FS builds on aiobotocore to provide a convenient Python filesystem interface for S3.. + +https://github.com/fsspec/s3fs/ # Available modules @@ -17,8 +21,15 @@ To start using s3fs, load one of these modules using a `module load` command lik module load s3fs/2023.12.2-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |s3fs/2023.12.2-foss-2023a|x|x|x|x|x|x| + + +### s3fs/2023.12.2-foss-2023a + +This is a list of extensions included in the module: + +aiobotocore-2.9.0, aioitertools-0.11.0, botocore-1.33.13, fsspec-2023.12.2, jmespath-1.0.1, s3fs-2023.12.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/samblaster.md b/mkdocs/docs/HPC/only/gent/available_software/detail/samblaster.md index 78d0d8e5d50e..98686c98263a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/samblaster.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/samblaster.md @@ -6,6 +6,10 @@ hide: samblaster ========== + +samblaster is a fast and flexible program for marking duplicates in read-id grouped1 paired-end SAM files. + +https://github.com/GregoryFaust/samblaster # Available modules @@ -17,7 +21,7 @@ To start using samblaster, load one of these modules using a `module load` comma module load samblaster/0.1.26-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/samclip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/samclip.md index 9ba388ddaa13..bd41887e7d51 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/samclip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/samclip.md @@ -6,6 +6,10 @@ hide: samclip ======= + +Filter SAM file for soft and hard clipped alignments. + +https://github.com/tseemann/samclip # Available modules @@ -17,7 +21,7 @@ To start using samclip, load one of these modules using a `module load` command module load samclip/0.4.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sansa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sansa.md index 6a8517f9642d..0c25c2d2e2b2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sansa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sansa.md @@ -6,6 +6,10 @@ hide: sansa ===== + +Structural variant (SV) annotation, a companion to the 'dolly'tool. + +https://github.com/dellytools/sansa/ # Available modules @@ -17,7 +21,7 @@ To start using sansa, load one of these modules using a `module load` command li module load sansa/0.0.7-gompi-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sbt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sbt.md index 3859ec242d4c..55ec839fc45a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sbt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sbt.md @@ -6,6 +6,10 @@ hide: sbt === + +sbt is a build tool for Scala, Java, and more. + +http://www.scala-sbt.org/ # Available modules @@ -17,7 +21,7 @@ To start using sbt, load one of these modules using a `module load` command like module load sbt/1.3.13-Java-1.8 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scArches.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scArches.md index 0c297f669711..c4552cba8a32 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scArches.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scArches.md @@ -6,6 +6,10 @@ hide: scArches ======== + +Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. + +https://github.com/theislab/scarches # Available modules @@ -17,9 +21,22 @@ To start using scArches, load one of these modules using a `module load` command module load scArches/0.5.6-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |scArches/0.5.6-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| |scArches/0.5.6-foss-2021a|x|x|x|x|x|x| + + +### scArches/0.5.6-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +gdown-4.6.0, muon-0.1.2, newick-1.4.0, scArches-0.5.6, scHPL-1.0.2, sklearn-0.0 + +### scArches/0.5.6-foss-2021a + +This is a list of extensions included in the module: + +gdown-4.6.0, muon-0.1.2, newick-1.4.0, scArches-0.5.6, scHPL-1.0.2, sklearn-0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scCODA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scCODA.md index d970d62bb048..5f84ac56e290 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scCODA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scCODA.md @@ -6,6 +6,10 @@ hide: scCODA ====== + +scCODA allows for identification of compositional changes in high-throughput sequencing count data,especially cell compositions from scRNA-seq. + +https://github.com/theislab/scCODA # Available modules @@ -17,8 +21,15 @@ To start using scCODA, load one of these modules using a `module load` command l module load scCODA/0.1.9-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |scCODA/0.1.9-foss-2021a|x|x|x|x|x|x| + + +### scCODA/0.1.9-foss-2021a + +This is a list of extensions included in the module: + +scCODA-0.1.9 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scGeneFit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scGeneFit.md index 3d652e3db0d3..069e7df9a347 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scGeneFit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scGeneFit.md @@ -6,6 +6,10 @@ hide: scGeneFit ========= + +Python code for genetic marker selection using linear programming. + +https://github.com/solevillar/scGeneFit-python # Available modules @@ -17,7 +21,7 @@ To start using scGeneFit, load one of these modules using a `module load` comman module load scGeneFit/1.0.2-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scHiCExplorer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scHiCExplorer.md index 4ff2ee6495af..b87435cbaeb1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scHiCExplorer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scHiCExplorer.md @@ -6,6 +6,10 @@ hide: scHiCExplorer ============= + +The scHiCExplorer is a software to demultiplex, process, correct, normalize, manipulate, analyse andvisualize single-cell Hi-C data. + +https://schicexplorer.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using scHiCExplorer, load one of these modules using a `module load` co module load scHiCExplorer/7-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |scHiCExplorer/7-foss-2022a|x|x|x|x|x|x| + + +### scHiCExplorer/7-foss-2022a + +This is a list of extensions included in the module: + +scHiCExplorer-7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scPred.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scPred.md index b6505c43011b..1eeee8ddb893 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scPred.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scPred.md @@ -6,6 +6,10 @@ hide: scPred ====== + +scPred package for cell type prediction from scRNA-seq data + +https://github.com/powellgenomicslab/scPred # Available modules @@ -17,7 +21,7 @@ To start using scPred, load one of these modules using a `module load` command l module load scPred/1.9.2-foss-2021b-R-4.1.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scVelo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scVelo.md index a39919643009..d3c94e6d892f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scVelo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scVelo.md @@ -6,6 +6,10 @@ hide: scVelo ====== + +scVelo is a scalable toolkit for estimating and analyzing RNA velocities in single cells using dynamical modeling. + +https://scvelo.org # Available modules @@ -17,10 +21,29 @@ To start using scVelo, load one of these modules using a `module load` command l module load scVelo/0.2.5-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |scVelo/0.2.5-foss-2022a|x|x|x|x|x|x| |scVelo/0.2.3-foss-2021a|-|x|x|-|x|x| |scVelo/0.1.24-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### scVelo/0.2.5-foss-2022a + +This is a list of extensions included in the module: + +scVelo-0.2.5 + +### scVelo/0.2.3-foss-2021a + +This is a list of extensions included in the module: + +anndata-0.7.6, get_version-3.2, legacy-api-wrap-1.2, loompy-3.0.6, natsort-7.1.1, numpy-groupies-0.9.13, scanpy-1.8.1, scVelo-0.2.3, seaborn-0.11.1, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.4.6, xlrd-1.2.0 + +### scVelo/0.1.24-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +anndata-0.7.1, get_version-2.1, legacy-api-wrap-1.2, loompy-3.0.6, natsort-7.0.0, numpy-groupies-0.9.10, scanpy-1.4.5.post2, scVelo-0.1.24, seaborn-0.9.0, umap-learn-0.3.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scanpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scanpy.md index fe52d1d2dadc..676ac454a69a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scanpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scanpy.md @@ -6,6 +6,10 @@ hide: scanpy ====== + +Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells. + +https://scanpy.readthedocs.io/en/stable/ # Available modules @@ -17,7 +21,7 @@ To start using scanpy, load one of these modules using a `module load` command l module load scanpy/1.9.8-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -27,3 +31,40 @@ module load scanpy/1.9.8-foss-2023a |scanpy/1.8.2-foss-2021b|x|x|x|x|x|x| |scanpy/1.8.1-foss-2021a|x|x|x|x|x|x| |scanpy/1.8.1-foss-2020b|-|x|x|x|x|x| + + +### scanpy/1.9.8-foss-2023a + +This is a list of extensions included in the module: + +joblib-1.3.2, legacy_api_wrap-1.4, natsort-8.4.0, packaging-23.2, scanpy-1.9.8, session-info-1.0.0, stdlib_list-0.10.0 + +### scanpy/1.9.1-foss-2022a + +This is a list of extensions included in the module: + +anndata-0.8.0, natsort-8.2.0, scanpy-1.9.1, session_info-1.0.0, sinfo-0.3.4, stdlib-list-0.8.0, xlrd-2.0.1 + +### scanpy/1.9.1-foss-2021b + +This is a list of extensions included in the module: + +anndata-0.8.0, natsort-8.2.0, pynndescent-0.5.8, scanpy-1.9.1, session_info-1.0.0, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.3, xlrd-2.0.1 + +### scanpy/1.8.2-foss-2021b + +This is a list of extensions included in the module: + +anndata-0.7.8, natsort-8.0.2, pynndescent-0.5.5, scanpy-1.8.2, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.2, xlrd-1.2.0 + +### scanpy/1.8.1-foss-2021a + +This is a list of extensions included in the module: + +anndata-0.7.6, natsort-7.1.1, pynndescent-0.5.4, scanpy-1.8.1, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.1, xlrd-1.2.0 + +### scanpy/1.8.1-foss-2020b + +This is a list of extensions included in the module: + +anndata-0.7.6, natsort-7.1.1, pynndescent-0.5.4, scanpy-1.8.1, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sceasy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sceasy.md index f4e1481320de..d862448d987d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sceasy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sceasy.md @@ -6,6 +6,10 @@ hide: sceasy ====== + +sceasy is a package that helps easy conversion of different single-cell data formats to each other + +https://github.com/cellgeni/sceasy # Available modules @@ -17,7 +21,7 @@ To start using sceasy, load one of these modules using a `module load` command l module load sceasy/0.0.7-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scib-metrics.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scib-metrics.md index 855632af847c..c056981113de 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scib-metrics.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scib-metrics.md @@ -6,6 +6,10 @@ hide: scib-metrics ============ + +Accelerated and Python-only metrics for benchmarking single-cell integration outputs + +https://scib-metrics.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using scib-metrics, load one of these modules using a `module load` com module load scib-metrics/0.3.3-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |scib-metrics/0.3.3-foss-2021a|x|x|x|x|x|x| + + +### scib-metrics/0.3.3-foss-2021a + +This is a list of extensions included in the module: + +chex-0.1.6, markdown-it-py-2.2.0, mdurl-0.1.2, plottable-0.1.5, pynndescent-0.5.10, rich-13.2.0, scib-metrics-0.3.3, setuptools-68.1.2, toolz-0.12.0, typing-extensions-4.7.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scib.md index c3429ada5817..b144ec377aa5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scib.md @@ -6,6 +6,10 @@ hide: scib ==== + +Benchmarking atlas-level data integration in single-cell genomics. + +https://github.com/theislab/scib # Available modules @@ -17,7 +21,7 @@ To start using scib, load one of these modules using a `module load` command lik module load scib/1.1.3-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-bio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-bio.md index 7c3f2c642d30..7d93e5ab1687 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-bio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-bio.md @@ -6,6 +6,10 @@ hide: scikit-bio ========== + +scikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithmsand educational resources for bioinformatics. + +http://scikit-bio.org # Available modules @@ -17,9 +21,22 @@ To start using scikit-bio, load one of these modules using a `module load` comma module load scikit-bio/0.5.7-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |scikit-bio/0.5.7-foss-2022a|x|x|x|x|x|x| |scikit-bio/0.5.7-foss-2021a|x|x|x|x|x|x| + + +### scikit-bio/0.5.7-foss-2022a + +This is a list of extensions included in the module: + +CacheControl-0.12.11, hdmedians-0.14.2, lockfile-0.12.2, msgpack-1.0.4, natsort-8.1.0, scikit-bio-0.5.7 + +### scikit-bio/0.5.7-foss-2021a + +This is a list of extensions included in the module: + +CacheControl-0.12.14, hdmedians-0.14.2, lockfile-0.12.2, msgpack-1.0.5, natsort-8.4.0, scikit-bio-0.5.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build.md index 7f521116b7b8..f5531e3b7e08 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build.md @@ -6,6 +6,10 @@ hide: scikit-build ============ + +Scikit-Build, or skbuild, is an improved build system generatorfor CPython C/C++/Fortran/Cython extensions. + +https://scikit-build.readthedocs.io/en/latest # Available modules @@ -17,7 +21,7 @@ To start using scikit-build, load one of these modules using a `module load` com module load scikit-build/0.17.6-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,46 @@ module load scikit-build/0.17.6-GCCcore-13.2.0 |scikit-build/0.11.1-fosscuda-2020b|x|-|-|-|x|-| |scikit-build/0.11.1-foss-2020b|-|x|x|x|x|x| |scikit-build/0.11.1-GCCcore-10.3.0|x|-|x|-|x|-| + + +### scikit-build/0.17.6-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +distro-1.8.0, packaging-23.1, scikit_build-0.17.6 + +### scikit-build/0.17.6-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +distro-1.8.0, packaging-23.1, scikit_build-0.17.6 + +### scikit-build/0.17.2-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +distro-1.8.0, scikit_build-0.17.2 + +### scikit-build/0.15.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +distro-1.7.0, scikit-build-0.15.0 + +### scikit-build/0.11.1-fosscuda-2020b + +This is a list of extensions included in the module: + +distro-1.5.0, scikit-build-0.11.1 + +### scikit-build/0.11.1-foss-2020b + +This is a list of extensions included in the module: + +distro-1.5.0, scikit-build-0.11.1 + +### scikit-build/0.11.1-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +distro-1.5.0, scikit-build-0.11.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-extremes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-extremes.md index 696de3e6ff48..4033c528bd1b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-extremes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-extremes.md @@ -6,6 +6,10 @@ hide: scikit-extremes =============== + +scikit-extremes is a basic statistical package to perform univariate extreme value calculations using Python + +https://github.com/kikocorreoso/scikit-extremes # Available modules @@ -17,8 +21,15 @@ To start using scikit-extremes, load one of these modules using a `module load` module load scikit-extremes/2022.4.10-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |scikit-extremes/2022.4.10-foss-2022a|x|x|x|x|x|x| + + +### scikit-extremes/2022.4.10-foss-2022a + +This is a list of extensions included in the module: + +numdifftools-0.9.41, scikit-extremes-2022.4.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-image.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-image.md index 771ddfe9187c..e588788e0b1d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-image.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-image.md @@ -6,6 +6,10 @@ hide: scikit-image ============ + +scikit-image is a collection of algorithms for image processing. + +https://scikit-image.org/ # Available modules @@ -17,7 +21,7 @@ To start using scikit-image, load one of these modules using a `module load` com module load scikit-image/0.19.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -29,3 +33,52 @@ module load scikit-image/0.19.3-foss-2022a |scikit-image/0.17.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| |scikit-image/0.16.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |scikit-image/0.16.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### scikit-image/0.19.3-foss-2022a + +This is a list of extensions included in the module: + +imread-0.7.4, pooch-1.6.0, PyWavelets-1.4.1, scikit-image-0.19.3, tifffile-2022.10.10 + +### scikit-image/0.19.1-foss-2021b + +This is a list of extensions included in the module: + +imread-0.7.4, pooch-1.5.2, PyWavelets-1.2.0, scikit-image-0.19.1, tifffile-2021.11.2 + +### scikit-image/0.18.3-foss-2021a + +This is a list of extensions included in the module: + +imageio-2.9.0, imread-0.7.4, pooch-1.5.2, PyWavelets-1.1.1, scikit-image-0.18.3, tifffile-2021.10.12 + +### scikit-image/0.18.1-fosscuda-2020b + +This is a list of extensions included in the module: + +imageio-2.9.0, imread-0.7.4, pooch-1.3.0, PyWavelets-1.1.1, scikit-image-0.18.1, tifffile-2021.2.1 + +### scikit-image/0.18.1-foss-2020b + +This is a list of extensions included in the module: + +imageio-2.9.0, imread-0.7.4, pooch-1.3.0, PyWavelets-1.1.1, scikit-image-0.18.1, tifffile-2021.2.1 + +### scikit-image/0.17.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +imageio-2.9.0, imread-0.7.4, networkx-2.4, pooch-1.1.1, PyWavelets-1.1.1, scikit-image-0.17.1, tifffile-2020.7.17 + +### scikit-image/0.16.2-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +imageio-2.6.1, imread-0.7.1, networkx-2.4, PyWavelets-1.1.1, scikit-image-0.16.2 + +### scikit-image/0.16.2-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +imageio-2.6.1, imread-0.7.1, networkx-2.4, PyWavelets-1.1.1, scikit-image-0.16.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-learn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-learn.md index 649ab8f07fb8..e9df9f49b070 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-learn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-learn.md @@ -6,6 +6,10 @@ hide: scikit-learn ============ + +Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world,building upon numpy, scipy, and matplotlib. As a machine-learning module,it provides versatile tools for data mining and analysis in any field of science and engineering.It strives to be simple and efficient, accessible to everybody, and reusable in various contexts. + +https://scikit-learn.org/stable/index.html # Available modules @@ -17,7 +21,7 @@ To start using scikit-learn, load one of these modules using a `module load` com module load scikit-learn/1.4.0-gfbf-2023b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -40,3 +44,70 @@ module load scikit-learn/1.4.0-gfbf-2023b |scikit-learn/0.20.4-intel-2019b-Python-2.7.16|-|x|x|-|x|x| |scikit-learn/0.20.4-foss-2021b-Python-2.7.18|x|x|x|x|x|x| |scikit-learn/0.20.4-foss-2020b-Python-2.7.18|-|x|x|x|x|x| + + +### scikit-learn/1.4.0-gfbf-2023b + +This is a list of extensions included in the module: + +scikit-learn-1.4.0, sklearn-0.0 + +### scikit-learn/1.3.2-gfbf-2023b + +This is a list of extensions included in the module: + +scikit-learn-1.3.2, sklearn-0.0 + +### scikit-learn/1.3.1-gfbf-2023a + +This is a list of extensions included in the module: + +scikit-learn-1.3.1, sklearn-0.0 + +### scikit-learn/1.2.1-gfbf-2022b + +This is a list of extensions included in the module: + +scikit-learn-1.2.1, sklearn-0.0 + +### scikit-learn/1.1.2-intel-2022a + +This is a list of extensions included in the module: + +scikit-learn-1.1.2, sklearn-0.0 + +### scikit-learn/1.1.2-foss-2022a + +This is a list of extensions included in the module: + +scikit-learn-1.1.2, sklearn-0.0 + +### scikit-learn/1.0.1-intel-2021b + +This is a list of extensions included in the module: + +scikit-learn-1.0.1, sklearn-0.0 + +### scikit-learn/1.0.1-foss-2021b + +This is a list of extensions included in the module: + +scikit-learn-1.0.1, sklearn-0.0 + +### scikit-learn/0.23.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +flit-2.3.0, flit-core-2.3.0, pytoml-0.1.21, scikit-learn-0.23.1, threadpoolctl-2.1.0 + +### scikit-learn/0.23.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +flit-2.3.0, flit-core-2.3.0, pytoml-0.1.21, scikit-learn-0.23.1, threadpoolctl-2.1.0 + +### scikit-learn/0.20.4-foss-2021b-Python-2.7.18 + +This is a list of extensions included in the module: + +scikit-learn-0.20.4, sklearn-0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-misc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-misc.md index d1ce7a545ca1..75378e3217dc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-misc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-misc.md @@ -6,6 +6,10 @@ hide: scikit-misc =========== + +Miscellaneous tools for data analysis and scientific computing + +https://github.com/has2k1/scikit-misc # Available modules @@ -17,7 +21,7 @@ To start using scikit-misc, load one of these modules using a `module load` comm module load scikit-misc/0.1.4-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-optimize.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-optimize.md index 7021bd2b4f68..edb5a4556797 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-optimize.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-optimize.md @@ -6,6 +6,10 @@ hide: scikit-optimize =============== + +Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) expensive and noisy black-box functions. + +https://scikit-optimize.github.io # Available modules @@ -17,7 +21,7 @@ To start using scikit-optimize, load one of these modules using a `module load` module load scikit-optimize/0.9.0-foss-2021a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scipy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scipy.md index ab1846c37d3c..50b2741a7ac1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scipy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scipy.md @@ -6,6 +6,10 @@ hide: scipy ===== + +SciPy is a collection of mathematical algorithms and convenience functions built on the Numpy extension for Python. + +https://www.scipy.org # Available modules @@ -17,7 +21,7 @@ To start using scipy, load one of these modules using a `module load` command li module load scipy/1.4.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scrublet.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scrublet.md index 9fa1f3b0b52b..3102e871a433 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scrublet.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scrublet.md @@ -6,6 +6,10 @@ hide: scrublet ======== + +Single-Cell Remover of Doublets - Python code for identifying doublets in single-cell RNA-seq data + +https://github.com/swolock/scrublet # Available modules @@ -17,8 +21,15 @@ To start using scrublet, load one of these modules using a `module load` command module load scrublet/0.2.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |scrublet/0.2.3-foss-2022a|x|x|x|x|x|x| + + +### scrublet/0.2.3-foss-2022a + +This is a list of extensions included in the module: + +annoy-1.17.1, pynndescent-0.5.7, scrublet-0.2.3, umap-learn-0.5.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scvi-tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scvi-tools.md index 4b6aa450b989..4d147d9a9c63 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scvi-tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scvi-tools.md @@ -6,6 +6,10 @@ hide: scvi-tools ========== + +scvi-tools (single-cell variational inference tools) is a package for probabilistic modeling andanalysis of single-cell omics data, built on top of PyTorch and AnnData. + +https://github.com/scverse/scvi-tools # Available modules @@ -17,9 +21,22 @@ To start using scvi-tools, load one of these modules using a `module load` comma module load scvi-tools/0.16.4-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |scvi-tools/0.16.4-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| |scvi-tools/0.16.4-foss-2021a|x|x|x|x|x|x| + + +### scvi-tools/0.16.4-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +anndata-0.8.0, chex-0.1.5, commonmark-0.9.1, contextlib2-21.6.0, docrep-0.3.2, flax-0.5.2, ml_collections-0.1.1, mudata-0.2.0, multipledispatch-0.6.0, natsort-8.1.0, numpyro-0.10.1, optax-0.1.3, pyro-api-0.1.2, pyro-ppl-1.8.0, rich-11.1.0, scvi-tools-0.16.4, toolz-0.12.0, typing_extensions-4.4.0 + +### scvi-tools/0.16.4-foss-2021a + +This is a list of extensions included in the module: + +anndata-0.8.0, chex-0.1.5, commonmark-0.9.1, contextlib2-21.6.0, docrep-0.3.2, flax-0.5.2, ml_collections-0.1.1, mudata-0.2.0, multipledispatch-0.6.0, natsort-8.1.0, numpyro-0.10.1, optax-0.1.3, pyro-api-0.1.2, pyro-ppl-1.8.0, rich-11.1.0, scvi-tools-0.16.4, toolz-0.12.0, typing_extensions-4.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/segemehl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/segemehl.md index da9a8b1a6690..8627a5a6f632 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/segemehl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/segemehl.md @@ -6,6 +6,10 @@ hide: segemehl ======== + +segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is able to mapprimer- or polyadenylation contaminated reads correctly. segemehl implements a matching strategy based on enhanced suffix arrays (ESA). Segemehl now supports the SAM format, reads gziped queries to save both disk and memory space and allows bisulfite sequencing mapping and split read mapping. + +https://www.bioinf.uni-leipzig.de/Software/segemehl/ # Available modules @@ -17,7 +21,7 @@ To start using segemehl, load one of these modules using a `module load` command module load segemehl/0.3.4-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/segmentation-models.md b/mkdocs/docs/HPC/only/gent/available_software/detail/segmentation-models.md index b9907ad00d56..e68f6e57e657 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/segmentation-models.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/segmentation-models.md @@ -6,6 +6,10 @@ hide: segmentation-models =================== + +Python library with Neural Networks for Image Segmentation based on Keras and TensorFlow. + +https://github.com/qubvel/segmentation_models # Available modules @@ -17,8 +21,15 @@ To start using segmentation-models, load one of these modules using a `module lo module load segmentation-models/1.0.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |segmentation-models/1.0.1-foss-2019b-Python-3.7.4|-|x|-|-|-|x| + + +### segmentation-models/1.0.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +efficientnet-1.0.0, image_classifiers-1.0.0, imageio-2.8.0, PyWavelets-1.1.1, segmentation_models-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/semla.md b/mkdocs/docs/HPC/only/gent/available_software/detail/semla.md index da21c1844abc..ab9c94ca1afe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/semla.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/semla.md @@ -6,6 +6,10 @@ hide: semla ===== + +R interface to the Apache Arrow C++ library + +https://cran.r-project.org/web/packages/arrow # Available modules @@ -17,7 +21,7 @@ To start using semla, load one of these modules using a `module load` command li module load semla/1.1.6-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/seqtk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/seqtk.md index 9020aaf1bd4a..d90d0ea9a7a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/seqtk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/seqtk.md @@ -6,6 +6,10 @@ hide: seqtk ===== + +Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip. + +https://github.com/lh3/seqtk/ # Available modules @@ -17,7 +21,7 @@ To start using seqtk, load one of these modules using a `module load` command li module load seqtk/1.4-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools-rust.md b/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools-rust.md index 81cea23262b7..9efefc3fd934 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools-rust.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools-rust.md @@ -6,6 +6,10 @@ hide: setuptools-rust =============== + +setuptools-rust is a plugin for setuptools to build Rust Python extensionsimplemented with PyO3 or rust-cpython. + +https://github.com/PyO3/setuptools-rust # Available modules @@ -17,9 +21,22 @@ To start using setuptools-rust, load one of these modules using a `module load` module load setuptools-rust/1.8.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |setuptools-rust/1.8.0-GCCcore-13.2.0|x|x|x|x|x|x| |setuptools-rust/1.6.0-GCCcore-12.3.0|x|x|x|x|x|x| + + +### setuptools-rust/1.8.0-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +semantic_version-2.10.0, setuptools-rust-1.8.0, typing_extensions-4.8.0 + +### setuptools-rust/1.6.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +semantic_version-2.10.0, setuptools-rust-1.6.0, typing_extensions-4.6.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools.md index fc8e74c8b328..056d3b278439 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools.md @@ -6,6 +6,10 @@ hide: setuptools ========== + +Easily download, build, install, upgrade, and uninstall Python packages + +https://pypi.org/project/setuptools # Available modules @@ -17,7 +21,7 @@ To start using setuptools, load one of these modules using a `module load` comma module load setuptools/64.0.3-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sf.md index 0d6856a3ba8c..48ebfaadd0ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sf.md @@ -6,6 +6,10 @@ hide: sf == + +Support for simple features, a standardized way to encode spatial vector data. Binds to GDAL forreading and writing data, to GEOS for geometrical operations, and to PROJ for projection conversions and datumtransformations. + +https://cran.r-project.org/package=sf # Available modules @@ -17,7 +21,7 @@ To start using sf, load one of these modules using a `module load` command like: module load sf/0.9-5-foss-2020a-R-4.0.0-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/shovill.md b/mkdocs/docs/HPC/only/gent/available_software/detail/shovill.md index 745c7860ef9d..9fab18d1ca44 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/shovill.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/shovill.md @@ -6,6 +6,10 @@ hide: shovill ======= + +Faster SPAdes assembly of Illumina reads + +https://github.com/tseemann/shovill # Available modules @@ -17,7 +21,7 @@ To start using shovill, load one of these modules using a `module load` command module load shovill/1.1.0-gompi-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/silhouetteRank.md b/mkdocs/docs/HPC/only/gent/available_software/detail/silhouetteRank.md index f4b6cceedd7f..145e5d16c5da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/silhouetteRank.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/silhouetteRank.md @@ -6,6 +6,10 @@ hide: silhouetteRank ============== + +silhouetteRank is a tool for finding spatially variable genes based on computing silhouette coefficient from binarized spatial gene expression data + +https://pypi.org/project/silhouetteRank # Available modules @@ -17,7 +21,7 @@ To start using silhouetteRank, load one of these modules using a `module load` c module load silhouetteRank/1.0.5.13-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/silx.md b/mkdocs/docs/HPC/only/gent/available_software/detail/silx.md index 1a8ef5c65098..5ac9c6f7cad7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/silx.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/silx.md @@ -6,6 +6,10 @@ hide: silx ==== + +The silx project provides a collection of Python packages to support the development of data assessment, reduction and analysis applications at synchrotron radiation facilities. + +http://www.silx.org/ # Available modules @@ -17,8 +21,15 @@ To start using silx, load one of these modules using a `module load` command lik module load silx/0.14.0-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |silx/0.14.0-foss-2020b|-|x|x|x|x|x| + + +### silx/0.14.0-foss-2020b + +This is a list of extensions included in the module: + +hdf5plugin-2.3.1, silx-0.14.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/slepc4py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/slepc4py.md index 5528ee6b36eb..c759a9f7c6e2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/slepc4py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/slepc4py.md @@ -6,6 +6,10 @@ hide: slepc4py ======== + +Python bindings for SLEPc, the Scalable Library for Eigenvalue Problem Computations. + +https://bitbucket.org/slepc/slepc4py # Available modules @@ -17,7 +21,7 @@ To start using slepc4py, load one of these modules using a `module load` command module load slepc4py/3.17.2-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/slow5tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/slow5tools.md index ff50eefdcf2a..88163f50e332 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/slow5tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/slow5tools.md @@ -6,6 +6,10 @@ hide: slow5tools ========== + +slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format. + +https://hasindu2008.github.io/slow5tools # Available modules @@ -17,7 +21,7 @@ To start using slow5tools, load one of these modules using a `module load` comma module load slow5tools/0.4.0-gompi-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/slurm-drmaa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/slurm-drmaa.md index 5e69d5daf0c7..247d9e8c57ff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/slurm-drmaa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/slurm-drmaa.md @@ -6,6 +6,10 @@ hide: slurm-drmaa =========== + +DRMAA for Slurm Workload Manager (Slurm) is an implementation of Open Grid Forum Distributed Resource Management Application API (DRMAA) version 1 for submission and control of jobs to Slurm. Using DRMAA, grid applications builders, portal developers and ISVs can use the same high-level API to link their software with different cluster/resource management systems. + +https://github.com/natefoo/slurm-drmaa # Available modules @@ -17,7 +21,7 @@ To start using slurm-drmaa, load one of these modules using a `module load` comm module load slurm-drmaa/1.1.3-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/smfishHmrf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/smfishHmrf.md index 24f7b94c030e..836ba905efe9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/smfishHmrf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/smfishHmrf.md @@ -6,6 +6,10 @@ hide: smfishHmrf ========== + +smFish spatial pattern mining and cell type prediction + +https://pypi.org/project/smfishHmrf # Available modules @@ -17,7 +21,7 @@ To start using smfishHmrf, load one of these modules using a `module load` comma module load smfishHmrf/1.3.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/smithwaterman.md b/mkdocs/docs/HPC/only/gent/available_software/detail/smithwaterman.md index 0fdb4357eb38..773d9bdb9de9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/smithwaterman.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/smithwaterman.md @@ -6,6 +6,10 @@ hide: smithwaterman ============= + +smith-waterman-gotoh alignment algorithm. + +https://github.com/ekg/smithwaterman # Available modules @@ -17,7 +21,7 @@ To start using smithwaterman, load one of these modules using a `module load` co module load smithwaterman/20160702-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/smooth-topk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/smooth-topk.md index 835188ce497e..eb9927eb1253 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/smooth-topk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/smooth-topk.md @@ -6,6 +6,10 @@ hide: smooth-topk =========== + +Smooth Loss Functions for Deep Top-k Classification + +https://github.com/oval-group/smooth-topk # Available modules @@ -17,9 +21,22 @@ To start using smooth-topk, load one of these modules using a `module load` comm module load smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| |smooth-topk/1.0-20210817-foss-2021a|-|x|x|-|x|x| + + +### smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +logger-1.4, smooth-topk-1.0-20210817 + +### smooth-topk/1.0-20210817-foss-2021a + +This is a list of extensions included in the module: + +logger-1.4, smooth-topk-1.0-20210817 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snakemake.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snakemake.md index a1fedd194bbc..6bea491eb090 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/snakemake.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/snakemake.md @@ -6,6 +6,10 @@ hide: snakemake ========= + +The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. + +https://snakemake.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using snakemake, load one of these modules using a `module load` comman module load snakemake/8.4.2-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -28,3 +32,46 @@ module load snakemake/8.4.2-foss-2023a |snakemake/6.10.0-foss-2021b|x|x|x|-|x|x| |snakemake/6.1.0-foss-2020b|-|x|x|x|x|x| |snakemake/5.26.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### snakemake/8.4.2-foss-2023a + +This is a list of extensions included in the module: + +argparse-dataclass-2.0.0, conda-inject-1.3.1, ConfigArgParse-1.7, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.6, fastjsonschema-2.19.1, humanfriendly-10.0, immutables-0.20, jupyter-core-5.7.1, nbformat-5.9.2, plac-1.4.2, reretry-0.11.8, smart-open-6.4.0, snakemake-8.4.2, snakemake-executor-plugin-cluster-generic-1.0.7, snakemake-executor-plugin-cluster-sync-0.1.3, snakemake-executor-plugin-flux-0.1.0, snakemake-executor-plugin-slurm-0.2.1, snakemake-executor-plugin-slurm-jobstep-0.1.10, snakemake-interface-common-1.15.2, snakemake-interface-executor-plugins-8.2.0, snakemake-interface-storage-plugins-3.0.0, stopit-1.1.2, throttler-1.2.2, toposort-1.10, yte-1.5.4 + +### snakemake/7.32.3-foss-2022b + +This is a list of extensions included in the module: + +amply-0.1.6, ConfigArgParse-1.7, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.6, fastjsonschema-2.18.0, humanfriendly-10.0, jupyter-core-5.3.1, nbformat-5.9.2, plac-1.3.5, reretry-0.11.8, smart-open-6.3.0, snakemake-7.32.3, stopit-1.1.2, throttler-1.2.2, toposort-1.10, yte-1.5.1 + +### snakemake/7.22.0-foss-2022a + +This is a list of extensions included in the module: + +amply-0.1.5, ConfigArgParse-1.5.3, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.4, humanfriendly-10.0, plac-1.3.5, PuLP-2.7.0, reretry-0.11.8, smart-open-6.3.0, snakemake-7.22.0, stopit-1.1.2, throttler-1.2.2, toposort-1.9, wrapt-1.14.1, yte-1.5.1 + +### snakemake/7.18.2-foss-2021b + +This is a list of extensions included in the module: + +amply-0.1.5, ConfigArgParse-1.5.3, connection_pool-0.0.3, datrie-0.8.2, dpath-2.0.6, plac-1.3.5, PuLP-2.7.0, PyYAML-6.0, ratelimiter-1.2.0.post0, reretry-0.11.1, smart_open-6.2.0, snakemake-7.18.2, stopit-1.1.2, throttler-1.2.1, toposort-1.7, wrapt-1.14.1, yte-1.5.1 + +### snakemake/6.10.0-foss-2021b + +This is a list of extensions included in the module: + +amply-0.1.4, ConfigArgParse-1.5.3, connection_pool-0.0.3, datrie-0.8.2, PuLP-2.5.1, ratelimiter-1.2.0.post0, smart_open-5.2.1, snakemake-6.10.0, stopit-1.1.2, toposort-1.7, wrapt-1.13.3 + +### snakemake/6.1.0-foss-2020b + +This is a list of extensions included in the module: + +amply-0.1.4, ConfigArgParse-1.4, datrie-0.8.2, PuLP-2.4, ratelimiter-1.2.0.post0, smart_open-4.1.2, snakemake-6.1.0, toposort-1.6, wrapt-1.12.1 + +### snakemake/5.26.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +amply-0.1.4, ConfigArgParse-1.2.3, datrie-0.8.2, ipython_genutils-0.2.0, jsonschema-3.2.0, jupyter-core-4.6.3, nbformat-5.0.8, PuLP-2.3, pyrsistent-0.17.3, ratelimiter-1.2.0.post0, snakemake-5.26.1, toposort-1.5, traitlets-5.0.5, wrapt-1.12.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snappy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snappy.md index 17bd2c666554..34fb80c6993f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/snappy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/snappy.md @@ -6,6 +6,10 @@ hide: snappy ====== + +Snappy is a compression/decompression library. It does not aimfor maximum compression, or compatibility with any other compression library;instead, it aims for very high speeds and reasonable compression. + +https://github.com/google/snappy # Available modules @@ -17,7 +21,7 @@ To start using snappy, load one of these modules using a `module load` command l module load snappy/1.1.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snippy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snippy.md index 72ad14fa1adb..9cd79cef3ffc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/snippy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/snippy.md @@ -6,6 +6,10 @@ hide: snippy ====== + +Rapid haploid variant calling and core genome alignment + +https://github.com/tseemann/snippy # Available modules @@ -17,7 +21,7 @@ To start using snippy, load one of these modules using a `module load` command l module load snippy/4.6.0-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snp-sites.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snp-sites.md index 10c4a4709e59..37fe166aef53 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/snp-sites.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/snp-sites.md @@ -6,6 +6,10 @@ hide: snp-sites ========= + +Finds SNP sites from a multi-FASTA alignment file. + +https://sanger-pathogens.github.io/snp-sites/ # Available modules @@ -17,7 +21,7 @@ To start using snp-sites, load one of these modules using a `module load` comman module load snp-sites/2.5.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snpEff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snpEff.md index 941fcd63f33a..035f55214145 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/snpEff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/snpEff.md @@ -6,6 +6,10 @@ hide: snpEff ====== + +SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes). + +https://pcingola.github.io/SnpEff/ # Available modules @@ -17,7 +21,7 @@ To start using snpEff, load one of these modules using a `module load` command l module load snpEff/5.0e-GCCcore-10.2.0-Java-13 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/solo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/solo.md index 51fde70ee36c..fe4cb0eb3e30 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/solo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/solo.md @@ -6,6 +6,10 @@ hide: solo ==== + +Doublet detection via semi-supervised deep learning + +https://github.com/calico/solo # Available modules @@ -17,8 +21,15 @@ To start using solo, load one of these modules using a `module load` command lik module load solo/1.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |solo/1.3-foss-2022a|x|x|x|x|x|x| + + +### solo/1.3-foss-2022a + +This is a list of extensions included in the module: + +commonmark-0.9.1, ConfigArgParse-1.5.3, docrep-0.3.2, opt-einsum-3.3.0, pyDeprecate-0.3.2, pyro-api-0.1.2, pyro-ppl-1.8.4, pytorch-lightning-1.3.8, PyYAML-5.4.1, rich-12.6.0, scvi-tools-0.14.6, solo-sc-1.3, torchmetrics-0.7.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sonic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sonic.md index 4c63a1be56d8..b84479f2f894 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sonic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sonic.md @@ -6,6 +6,10 @@ hide: sonic ===== + +Sonic is a simple algorithm for speeding up or slowing down speech. However,it's optimized for speed ups of over 2X, unlike previous algorithms for changingspeech rate. The Sonic library is a very simple ANSI C library that is designedto easily be integrated into streaming voice applications, like TTS back ends. + +https://github.com/espeak-ng/sonic # Available modules @@ -17,7 +21,7 @@ To start using sonic, load one of these modules using a `module load` command li module load sonic/20180202-gompi-2020a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spaCy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spaCy.md index 243e608898b2..84b0c9bc5e37 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/spaCy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/spaCy.md @@ -6,6 +6,10 @@ hide: spaCy ===== + +Industrial-strength Natural Language Processing (NLP) in Python. + +https://spacy.io/ # Available modules @@ -17,8 +21,15 @@ To start using spaCy, load one of these modules using a `module load` command li module load spaCy/3.4.4-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |spaCy/3.4.4-foss-2022a|x|x|x|x|x|x| + + +### spaCy/3.4.4-foss-2022a + +This is a list of extensions included in the module: + +blis-0.7.9, catalogue-2.0.8, confection-0.0.3, cymem-2.0.7, langcodes-3.3.0, ml_datasets-0.2.0, murmurhash-1.0.9, pathy-0.10.1, preshed-3.0.8, pydantic-1.10.2, smart-open-6.3.0, spaCy-3.4.4, spacy-legacy-3.0.10, spacy-loggers-1.0.4, srsly-2.4.5, thinc-8.1.6, tqdm-4.64.1, typer-0.7.0, wasabi-0.10.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spaln.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spaln.md index c46ee8c92ac8..ca23931cecad 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/spaln.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/spaln.md @@ -6,6 +6,10 @@ hide: spaln ===== + +Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. + +https://github.com/ogotoh/spaln # Available modules @@ -17,7 +21,7 @@ To start using spaln, load one of these modules using a `module load` command li module load spaln/2.4.13f-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sparse-neighbors-search.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sparse-neighbors-search.md index 4203e1ca5a82..90d1c509ff61 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sparse-neighbors-search.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sparse-neighbors-search.md @@ -6,6 +6,10 @@ hide: sparse-neighbors-search ======================= + +A Python/C++ implementation of an approximate nearest neighbor search for sparse data structures based on the idea of local sensitiv hash functions. + +https://github.com/joachimwolff/sparse-neighbors-search # Available modules @@ -17,8 +21,15 @@ To start using sparse-neighbors-search, load one of these modules using a `modul module load sparse-neighbors-search/0.7-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |sparse-neighbors-search/0.7-foss-2022a|x|x|x|x|x|x| + + +### sparse-neighbors-search/0.7-foss-2022a + +This is a list of extensions included in the module: + +sparse-neighbors-search-0.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sparsehash.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sparsehash.md index c95e20f1522e..1255af9be57b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sparsehash.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sparsehash.md @@ -6,6 +6,10 @@ hide: sparsehash ========== + +An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed. + +https://github.com/sparsehash/sparsehash # Available modules @@ -17,7 +21,7 @@ To start using sparsehash, load one of these modules using a `module load` comma module load sparsehash/2.0.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spatialreg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spatialreg.md index 62996244b333..df2a85ac5e27 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/spatialreg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/spatialreg.md @@ -6,6 +6,10 @@ hide: spatialreg ========== + +A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep', 'sphet' and 'spse'. + +https://cran.r-project.org/package=spatialreg # Available modules @@ -17,9 +21,22 @@ To start using spatialreg, load one of these modules using a `module load` comma module load spatialreg/1.1-8-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |spatialreg/1.1-8-foss-2021a-R-4.1.0|-|x|x|-|x|x| |spatialreg/1.1-5-foss-2019b-R-3.6.2|-|x|x|-|x|x| + + +### spatialreg/1.1-8-foss-2021a-R-4.1.0 + +This is a list of extensions included in the module: + +s2-1.0.6, sf-1.0-2, spatialreg-1.1-8, spdep-1.1-8, wk-0.5.0 + +### spatialreg/1.1-5-foss-2019b-R-3.6.2 + +This is a list of extensions included in the module: + +sf-0.8-0, spatialreg-1.1-5, spdep-1.1-3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/speech_tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/speech_tools.md index 98e4083a0eed..3df15e16d47d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/speech_tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/speech_tools.md @@ -6,6 +6,10 @@ hide: speech_tools ============ + +The Edinburgh Speech Tools Library is a collection of C++ class,functions and related programs for manipulating the sorts of objectsused in speech processing. It includes support for reading and writingwaveforms, parameter files (LPC, Ceptra, F0) in various formatsand converting between them.It also includes support for linguistic type objects and supportfor various label files and ngrams (with smoothing). + +['http://festvox.org/festival/'] # Available modules @@ -17,7 +21,7 @@ To start using speech_tools, load one of these modules using a `module load` com module load speech_tools/2.5.0-GCCcore-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spglib-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spglib-python.md index 6dfccec484a6..d97c884c00b0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/spglib-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/spglib-python.md @@ -6,6 +6,10 @@ hide: spglib-python ============= + +Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C. + +https://pypi.python.org/pypi/spglib # Available modules @@ -17,7 +21,7 @@ To start using spglib-python, load one of these modules using a `module load` co module load spglib-python/2.0.0-intel-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md index 91f9c151f15f..535d86eab595 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md @@ -6,6 +6,10 @@ hide: spoa ==== + +Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm which is used to generate consensus sequences + +https://github.com/rvaser/spoa # Available modules @@ -17,7 +21,7 @@ To start using spoa, load one of these modules using a `module load` command lik module load spoa/4.0.7-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/stardist.md b/mkdocs/docs/HPC/only/gent/available_software/detail/stardist.md index 9fa140f6aa3d..0200c59f739c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/stardist.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/stardist.md @@ -6,6 +6,10 @@ hide: stardist ======== + +Object Detection with Star-convex Shapes. + +https://github.com/stardist/stardist # Available modules @@ -17,9 +21,22 @@ To start using stardist, load one of these modules using a `module load` command module load stardist/0.8.3-foss-2021b-CUDA-11.4.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |stardist/0.8.3-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-| |stardist/0.8.3-foss-2021b|x|x|x|x|x|x| + + +### stardist/0.8.3-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +configparser-5.3.0, csbdeep-0.7.2, edt-2.3.0, funcsigs-1.0.2, gputools-0.2.14, reikna-0.7.6, scikit-tensor-py3-20210331, stardist-0.8.3, tifffile-2022.10.10 + +### stardist/0.8.3-foss-2021b + +This is a list of extensions included in the module: + +csbdeep-0.7.2, edt-2.3.0, stardist-0.8.3, tifffile-2022.10.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/stars.md b/mkdocs/docs/HPC/only/gent/available_software/detail/stars.md index 54277743024d..9e36bbd21d80 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/stars.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/stars.md @@ -6,6 +6,10 @@ hide: stars ===== + +Reading, manipulating, writing and plotting spatiotemporal arrays (raster and vector data cubes) in R, using GDAL bindings provided by sf, and NetCDF bindings by ncmeta and RNetCDF. + +https://cran.r-project.org/package=stars # Available modules @@ -17,8 +21,15 @@ To start using stars, load one of these modules using a `module load` command li module load stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2|-|x|x|-|x|x| + + +### stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2 + +This is a list of extensions included in the module: + +lwgeom-0.2-5, ncmeta-0.3.0, RNetCDF-2.3-1, stars-0.4-3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/statsmodels.md b/mkdocs/docs/HPC/only/gent/available_software/detail/statsmodels.md index 125dabd4bd58..29b98a6c6c14 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/statsmodels.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/statsmodels.md @@ -6,6 +6,10 @@ hide: statsmodels =========== + +Statsmodels is a Python module that allows users to explore data, estimate statistical models,and perform statistical tests. + +https://www.statsmodels.org/ # Available modules @@ -17,7 +21,7 @@ To start using statsmodels, load one of these modules using a `module load` comm module load statsmodels/0.14.1-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -34,3 +38,82 @@ module load statsmodels/0.14.1-gfbf-2023a |statsmodels/0.11.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |statsmodels/0.11.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| |statsmodels/0.9.0-intel-2019b-Python-2.7.16|-|x|-|-|-|x| + + +### statsmodels/0.14.1-gfbf-2023a + +This is a list of extensions included in the module: + +patsy-0.5.6, statsmodels-0.14.1 + +### statsmodels/0.14.0-gfbf-2022b + +This is a list of extensions included in the module: + +patsy-0.5.3, statsmodels-0.14.0 + +### statsmodels/0.13.1-intel-2021b + +This is a list of extensions included in the module: + +patsy-0.5.2, statsmodels-0.13.1 + +### statsmodels/0.13.1-foss-2022a + +This is a list of extensions included in the module: + +patsy-0.5.2, statsmodels-0.13.1 + +### statsmodels/0.13.1-foss-2021b + +This is a list of extensions included in the module: + +patsy-0.5.2, statsmodels-0.13.1 + +### statsmodels/0.12.2-foss-2021a + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.12.2 + +### statsmodels/0.12.1-intel-2020b + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.12.1 + +### statsmodels/0.12.1-fosscuda-2020b + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.12.1 + +### statsmodels/0.12.1-foss-2020b + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.12.1 + +### statsmodels/0.11.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.11.1 + +### statsmodels/0.11.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.11.0 + +### statsmodels/0.11.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.11.0 + +### statsmodels/0.9.0-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/suave.md b/mkdocs/docs/HPC/only/gent/available_software/detail/suave.md index af371a9e0787..56874fda5573 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/suave.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/suave.md @@ -6,6 +6,10 @@ hide: suave ===== + +suave is an interactive web application to visualize read depthratios between two samples and the structural variants of one of the samples(typically the "case" sample in a case/control setup such as tumor/normalcomparison). + +https://github.com/dellytools/suave # Available modules @@ -17,7 +21,7 @@ To start using suave, load one of these modules using a `module load` command li module load suave/20160529-foss-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/supernova.md b/mkdocs/docs/HPC/only/gent/available_software/detail/supernova.md index 9111a2de1bf1..6646efb0701b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/supernova.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/supernova.md @@ -6,6 +6,10 @@ hide: supernova ========= + +Supernova is a software package for de novo assembly from Chromium Linked-Reads that are made from a single whole-genome library from an individual DNA source + +https://support.10xgenomics.com/de-novo-assembly/software/overview/latest/welcome # Available modules @@ -17,7 +21,7 @@ To start using supernova, load one of these modules using a `module load` comman module load supernova/2.0.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/swissknife.md b/mkdocs/docs/HPC/only/gent/available_software/detail/swissknife.md index 75633ba8668b..0ef2262e6833 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/swissknife.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/swissknife.md @@ -6,6 +6,10 @@ hide: swissknife ========== + +Perl module for reading and writing UniProtKB data in plain text format. + +https://sourceforge.net/projects/swissknife/ # Available modules @@ -17,7 +21,7 @@ To start using swissknife, load one of these modules using a `module load` comma module load swissknife/1.80-GCCcore-8.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sympy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sympy.md index 98b93472fa2e..a310e2e282e2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sympy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sympy.md @@ -6,6 +6,10 @@ hide: sympy ===== + +SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries. + +https://sympy.org/ # Available modules @@ -17,7 +21,7 @@ To start using sympy, load one of these modules using a `module load` command li module load sympy/1.12-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/synapseclient.md b/mkdocs/docs/HPC/only/gent/available_software/detail/synapseclient.md index fd25e7708b8a..29e0cb381e45 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/synapseclient.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/synapseclient.md @@ -6,6 +6,10 @@ hide: synapseclient ============= + +The synapseclient package provides an interface to Synapse, a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate, providing support for: integrated presentation of data, code and text fine grained access control provenance tracking The synapseclient package lets you communicate with the cloud-hosted Synapse service to access data and create shared data analysis projects from within Python scripts or at the interactive Python console. Other Synapse clients exist for R, Java, and the web. The Python client can also be used from the command line. + +https://help.synapse.org/docs/ # Available modules @@ -17,8 +21,15 @@ To start using synapseclient, load one of these modules using a `module load` co module load synapseclient/3.0.0-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |synapseclient/3.0.0-GCCcore-12.2.0|x|x|x|x|x|x| + + +### synapseclient/3.0.0-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +cryptography-3.3.2, Deprecated-1.2.14, keyring-23.4.1, keyrings.alt-3.1, synapseclient-3.0.0, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/synthcity.md b/mkdocs/docs/HPC/only/gent/available_software/detail/synthcity.md index 590fa8767287..4c5574ee2498 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/synthcity.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/synthcity.md @@ -6,6 +6,10 @@ hide: synthcity ========= + +A library for generating and evaluating synthetic tabular data. + +https://github.com/vanderschaarlab/synthcity # Available modules @@ -17,8 +21,15 @@ To start using synthcity, load one of these modules using a `module load` comman module load synthcity/0.2.4-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |synthcity/0.2.4-foss-2022a|x|x|x|x|x|x| + + +### synthcity/0.2.4-foss-2022a + +This is a list of extensions included in the module: + +decaf_synthetic_data-0.1.6, feather-format-0.4.1, fflows-0.0.3, fsspec-2022.7.1, functorch-0.2.0, geomloss-0.2.5, inflate64-0.3.1, keopscore-2.1.1, loguru-0.6.0, multivolumefile-0.2.3, nflows-0.14, opacus-1.3.0, opt_einsum-3.3.0, pgmpy-0.1.21, py7zr-0.20.4, pybcj-1.0.1, pycox-0.2.3, pycryptodomex-3.17, pykeops-2.1.1, pyppmd-1.0.0, pyts-0.12.0, pyzstd-0.15.4, synthcity-0.2.4, texttable-1.6.7, thinc-8.1.9, torchtuples-0.2.2, tsai-0.3.5, xgbse-0.2.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tMAE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tMAE.md index 8978dab39ee0..96254dc3e136 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tMAE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tMAE.md @@ -6,6 +6,10 @@ hide: tMAE ==== + +Package containing functions to: perform a negative binomial test on allele-specific counts add gnomAD minor allele frequencies MAplot (FC vs total counts) of allele-specific counts and results allelic counts (ALT vs REF) + +https://github.com/mumichae/tMAE # Available modules @@ -17,7 +21,7 @@ To start using tMAE, load one of these modules using a `module load` command lik module load tMAE/1.0.0-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tabixpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tabixpp.md index 9010f545618a..978f736fa0db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tabixpp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tabixpp.md @@ -6,6 +6,10 @@ hide: tabixpp ======= + +C++ wrapper to tabix indexer + +https://github.com/ekg/tabixpp # Available modules @@ -17,7 +21,7 @@ To start using tabixpp, load one of these modules using a `module load` command module load tabixpp/1.1.2-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/task-spooler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/task-spooler.md index 04558f40a42f..3d7b3e76077a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/task-spooler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/task-spooler.md @@ -6,6 +6,10 @@ hide: task-spooler ============ + +task spooler is a Unix batch system where the tasks spooled run one after the other. + +http://viric.name/soft/ts/ # Available modules @@ -17,7 +21,7 @@ To start using task-spooler, load one of these modules using a `module load` com module load task-spooler/1.0.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/taxator-tk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/taxator-tk.md index ec8615fc0c02..ab12d545f41e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/taxator-tk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/taxator-tk.md @@ -6,6 +6,10 @@ hide: taxator-tk ========== + +A set of programs for the taxonomic analysis of nucleotide sequence data + +https://github.com/fungs/taxator-tk # Available modules @@ -17,7 +21,7 @@ To start using taxator-tk, load one of these modules using a `module load` comma module load taxator-tk/1.3.3-gompi-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tbb.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tbb.md index 1318614e35db..81bc9e15422b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tbb.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tbb.md @@ -6,6 +6,10 @@ hide: tbb === + +Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. + +https://github.com/oneapi-src/oneTBB # Available modules @@ -17,7 +21,7 @@ To start using tbb, load one of these modules using a `module load` command like module load tbb/2021.5.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tbl2asn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tbl2asn.md index 436ae41a0a21..ff9021a5aea5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tbl2asn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tbl2asn.md @@ -6,6 +6,10 @@ hide: tbl2asn ======= + +Tbl2asn is a command-line program that automates the creation of sequence records for submission to GenBank + +https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/ # Available modules @@ -17,7 +21,7 @@ To start using tbl2asn, load one of these modules using a `module load` command module load tbl2asn/20220427-linux64 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tcsh.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tcsh.md index 12174155a500..cb16ba82c6dd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tcsh.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tcsh.md @@ -6,6 +6,10 @@ hide: tcsh ==== + +Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax. + +https://www.tcsh.org # Available modules @@ -17,7 +21,7 @@ To start using tcsh, load one of these modules using a `module load` command lik module load tcsh/6.24.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboard.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboard.md index adaa23142367..7db2e9762bc4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboard.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboard.md @@ -6,6 +6,10 @@ hide: tensorboard =========== + +TensorBoard is a suite of web applications for inspecting and understanding your TensorFlow runsand graphs. + +https://github.com/tensorflow/tensorboard # Available modules @@ -17,9 +21,22 @@ To start using tensorboard, load one of these modules using a `module load` comm module load tensorboard/2.10.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |tensorboard/2.10.0-foss-2022a|x|x|x|x|x|x| |tensorboard/2.8.0-foss-2021a|x|x|x|x|x|x| + + +### tensorboard/2.10.0-foss-2022a + +This is a list of extensions included in the module: + +absl-py-1.2.0, cachetools-5.2.0, google-auth-2.11.1, google-auth-oauthlib-0.4.6, grpcio-1.49.1, Markdown-3.4.1, oauthlib-3.2.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.1, rsa-4.9, tensorboard-2.10.0, tensorboard_data_server-0.6.1, tensorboard_plugin_wit-1.8.1, Werkzeug-2.2.2 + +### tensorboard/2.8.0-foss-2021a + +This is a list of extensions included in the module: + +absl-py-1.0.0, cachetools-5.0.0, google-auth-2.5.0, google-auth-2.5.0, google-auth-oauthlib-0.4.6, grpcio-1.43.0, importlib_metadata-4.10.1, Markdown-3.3.6, oauthlib-3.1.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.8, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_wit-1.8.1, Werkzeug-2.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboardX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboardX.md index 4579e4647b1f..eb8e39ad7308 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboardX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboardX.md @@ -6,6 +6,10 @@ hide: tensorboardX ============ + +Tensorboard for PyTorch. + +https://github.com/lanpa/tensorboardX # Available modules @@ -17,7 +21,7 @@ To start using tensorboardX, load one of these modules using a `module load` com module load tensorboardX/2.6.2.2-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -27,3 +31,22 @@ module load tensorboardX/2.6.2.2-foss-2023a |tensorboardX/2.2-fosscuda-2020b-PyTorch-1.7.1|-|-|-|-|x|-| |tensorboardX/2.2-foss-2020b-PyTorch-1.7.1|-|x|x|x|x|x| |tensorboardX/2.1-fosscuda-2020b-PyTorch-1.7.1|-|-|-|-|x|-| + + +### tensorboardX/2.6.2.2-foss-2023a + +This is a list of extensions included in the module: + +tensorboardX-2.6.2.2 + +### tensorboardX/2.6.2.2-foss-2022b + +This is a list of extensions included in the module: + +tensorboardX-2.6.2.2 + +### tensorboardX/2.5.1-foss-2022a + +This is a list of extensions included in the module: + +tensorboardX-2.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorflow-probability.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorflow-probability.md index b978426026b6..53b8f2d69f19 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorflow-probability.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorflow-probability.md @@ -6,6 +6,10 @@ hide: tensorflow-probability ====================== + +TensorFlow Probability (TFP) is a library for probabilistic reasoning and statistical analysis. + +https://www.tensorflow.org/probability # Available modules @@ -17,9 +21,22 @@ To start using tensorflow-probability, load one of these modules using a `module module load tensorflow-probability/0.19.0-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |tensorflow-probability/0.19.0-foss-2022a|x|x|x|x|x|x| |tensorflow-probability/0.14.0-foss-2021a|x|x|x|x|x|x| + + +### tensorflow-probability/0.19.0-foss-2022a + +This is a list of extensions included in the module: + +cloudpickle-2.2.0, tensorflow-probability-0.19.0 + +### tensorflow-probability/0.14.0-foss-2021a + +This is a list of extensions included in the module: + +cloudpickle-2.2.1, tensorflow-probability-0.14.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/texinfo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/texinfo.md index fadc8b57b1c3..e9c18b9fb93c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/texinfo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/texinfo.md @@ -6,6 +6,10 @@ hide: texinfo ======= + +Texinfo is the official documentation format of the GNU project. + +https://www.gnu.org/software/texinfo/ # Available modules @@ -17,7 +21,7 @@ To start using texinfo, load one of these modules using a `module load` command module load texinfo/6.7-GCCcore-9.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/texlive.md b/mkdocs/docs/HPC/only/gent/available_software/detail/texlive.md index 845705640c56..c9f592da772d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/texlive.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/texlive.md @@ -6,6 +6,10 @@ hide: texlive ======= + +TeX is a typesetting language. Instead of visually formatting your text, you enter your manuscript text intertwined with TeX commands in a plain text file. You then run TeX to produce formatted output, such as a PDF file. Thus, in contrast to standard word processors, your document is a separate file that does not pretend to be a representation of the final typeset output, and so can be easily edited and manipulated. + +https://tug.org # Available modules @@ -17,7 +21,7 @@ To start using texlive, load one of these modules using a `module load` command module load texlive/20230313-GCC-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tidymodels.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tidymodels.md index db32e1d8fc30..3d10535d33ef 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tidymodels.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tidymodels.md @@ -6,6 +6,10 @@ hide: tidymodels ========== + +tidymodels is a 'meta-package' for modeling and statistical analysis that shares the underlying design philosophy, grammar, and data structures of the tidyverse. + +https://tidymodels.tidymodels.org # Available modules @@ -17,8 +21,15 @@ To start using tidymodels, load one of these modules using a `module load` comma module load tidymodels/1.1.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |tidymodels/1.1.0-foss-2022b|x|x|x|x|x|x| + + +### tidymodels/1.1.0-foss-2022b + +This is a list of extensions included in the module: + +cli-3.6.1, conflicted-1.2.0, dials-1.2.0, DiceDesign-1.9, dplyr-1.1.2, ggplot2-3.4.2, GPfit-1.0-8, hardhat-1.3.0, infer-1.0.4, modeldata-1.1.0, modelenv-0.1.1, parsnip-1.1.0, pillar-1.9.0, recipes-1.0.6, rsample-1.1.1, slider-0.3.0, tibble-3.2.1, tidymodels-1.1.0, tune-1.1.1, vctrs-0.6.3, warp-0.2.0, workflows-1.1.3, workflowsets-1.0.1, yardstick-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/time.md b/mkdocs/docs/HPC/only/gent/available_software/detail/time.md index f0665b2557e0..4a7689df5f9a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/time.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/time.md @@ -6,6 +6,10 @@ hide: time ==== + +The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running. + +https://www.gnu.org/software/time/ # Available modules @@ -17,7 +21,7 @@ To start using time, load one of these modules using a `module load` command lik module load time/1.9-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/timm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/timm.md index cc095e37f914..c4225f711426 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/timm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/timm.md @@ -6,6 +6,10 @@ hide: timm ==== + +timm is a library containing SOTA computer vision models, layers, utilities,optimizers, schedulers, data-loaders, augmentations, and training/evaluationscripts. It comes packaged with >700 pretrained models, and is designed to beflexible and easy to use. + +https://huggingface.co/docs/timm # Available modules @@ -17,9 +21,22 @@ To start using timm, load one of these modules using a `module load` command lik module load timm/0.9.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |timm/0.9.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |timm/0.6.13-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| + + +### timm/0.9.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +huggingface_hub-0.15.1, safetensors-0.3.1, timm-0.9.2 + +### timm/0.6.13-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +huggingface_hub-0.13.4, safetensors-0.3.0, timm-0.6.13 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tmux.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tmux.md index e479282590fa..f526576b3a96 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tmux.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tmux.md @@ -6,6 +6,10 @@ hide: tmux ==== + +tmux is a terminal multiplexer: it enables a number ofterminals to be created, accessed, and controlled from a single screen. tmuxmay be detached from a screen and continue running in the background, thenlater reattached. + +https://github.com/tmux/tmux/ # Available modules @@ -17,7 +21,7 @@ To start using tmux, load one of these modules using a `module load` command lik module load tmux/3.2a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tokenizers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tokenizers.md index 8c37b7de6ee4..5427b0cec1d9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tokenizers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tokenizers.md @@ -6,6 +6,10 @@ hide: tokenizers ========== + +Fast State-of-the-Art Tokenizers optimized for Research and Production + +https://github.com/huggingface/tokenizers # Available modules @@ -17,7 +21,7 @@ To start using tokenizers, load one of these modules using a `module load` comma module load tokenizers/0.13.3-GCCcore-12.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/torchaudio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/torchaudio.md index dae2d73bbe82..af61d285244b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/torchaudio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/torchaudio.md @@ -6,6 +6,10 @@ hide: torchaudio ========== + +Data manipulation and transformation for audio signalprocessing, powered by PyTorch + +https://github.com/pytorch/audio # Available modules @@ -17,7 +21,7 @@ To start using torchaudio, load one of these modules using a `module load` comma module load torchaudio/0.12.0-foss-2022a-PyTorch-1.12.0-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/torchtext.md b/mkdocs/docs/HPC/only/gent/available_software/detail/torchtext.md index 4ffaf43c277f..67f590a52ac3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/torchtext.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/torchtext.md @@ -6,6 +6,10 @@ hide: torchtext ========= + +Data loaders and abstractions for text and NLP + +https://github.com/pytorch/text # Available modules @@ -17,7 +21,7 @@ To start using torchtext, load one of these modules using a `module load` comman module load torchtext/0.14.1-foss-2022a-PyTorch-1.12.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/torchvf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/torchvf.md index f12918cf587b..bb92248a898a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/torchvf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/torchvf.md @@ -6,6 +6,10 @@ hide: torchvf ======= + +TorchVF is a unifying Python library for using vector fields for efficient proposal-free instance segmentation. + +https://github.com/ryanirl/torchvf # Available modules @@ -17,9 +21,22 @@ To start using torchvf, load one of these modules using a `module load` command module load torchvf/0.1.3-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |torchvf/0.1.3-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| |torchvf/0.1.3-foss-2022a|x|x|x|x|x|x| + + +### torchvf/0.1.3-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +edt-2.3.1, torchvf-0.1.3 + +### torchvf/0.1.3-foss-2022a + +This is a list of extensions included in the module: + +edt-2.3.1, torchvf-0.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/torchvision.md b/mkdocs/docs/HPC/only/gent/available_software/detail/torchvision.md index 94cb9ac31f42..24e292273467 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/torchvision.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/torchvision.md @@ -6,6 +6,10 @@ hide: torchvision =========== + +Datasets, Transforms and Models specific to Computer Vision + +https://github.com/pytorch/vision # Available modules @@ -17,7 +21,7 @@ To start using torchvision, load one of these modules using a `module load` comm module load torchvision/0.14.1-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tornado.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tornado.md index f90aa6c6002d..80a4d6583014 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tornado.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tornado.md @@ -6,6 +6,10 @@ hide: tornado ======= + +Tornado is a Python web framework and asynchronous networking library. + +https://github.com/tornadoweb/tornado # Available modules @@ -17,7 +21,7 @@ To start using tornado, load one of these modules using a `module load` command module load tornado/6.3.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tqdm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tqdm.md index fc5d931165ec..cc5acf3b2e51 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tqdm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tqdm.md @@ -6,6 +6,10 @@ hide: tqdm ==== + +A fast, extensible progress bar for Python and CLI + +https://github.com/tqdm/tqdm # Available modules @@ -17,7 +21,7 @@ To start using tqdm, load one of these modules using a `module load` command lik module load tqdm/4.66.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/treatSens.md b/mkdocs/docs/HPC/only/gent/available_software/detail/treatSens.md index 6828fd02b78d..f3cbc295f6de 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/treatSens.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/treatSens.md @@ -6,6 +6,10 @@ hide: treatSens ========= + +Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment. + +https://github.com/vdorie/treatSens # Available modules @@ -17,7 +21,7 @@ To start using treatSens, load one of these modules using a `module load` comman module load treatSens/3.0-20201002-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/trimAl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/trimAl.md index c2a8a7fa3eef..3b4cbef55f43 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/trimAl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/trimAl.md @@ -6,6 +6,10 @@ hide: trimAl ====== + +EVB, FEP and LIE simulator. + +https://github.com/scapella/trimal # Available modules @@ -17,7 +21,7 @@ To start using trimAl, load one of these modules using a `module load` command l module load trimAl/1.4.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tsne.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tsne.md index ea08e2baff8b..d82bb329cbd9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tsne.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tsne.md @@ -6,6 +6,10 @@ hide: tsne ==== + +Python library containing T-SNE algorithms. + +https://github.com/danielfrg/tsne # Available modules @@ -17,7 +21,7 @@ To start using tsne, load one of these modules using a `module load` command lik module load tsne/0.1.8-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/typing-extensions.md b/mkdocs/docs/HPC/only/gent/available_software/detail/typing-extensions.md index fa53eb516618..51404d646eee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/typing-extensions.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/typing-extensions.md @@ -6,6 +6,10 @@ hide: typing-extensions ================= + +Typing Extensions – Backported and Experimental Type Hints for Python + +https://github.com/python/typing/blob/master/typing_extensions/README.rst # Available modules @@ -17,7 +21,7 @@ To start using typing-extensions, load one of these modules using a `module load module load typing-extensions/4.9.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/umap-learn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/umap-learn.md index 90dd854dbb79..656de3679c01 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/umap-learn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/umap-learn.md @@ -6,6 +6,10 @@ hide: umap-learn ========== + +Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction. + +https://pypi.org/project/umap-learn/ # Available modules @@ -17,7 +21,7 @@ To start using umap-learn, load one of these modules using a `module load` comma module load umap-learn/0.5.5-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -25,3 +29,22 @@ module load umap-learn/0.5.5-foss-2023a |umap-learn/0.5.3-foss-2022a|x|x|x|x|x|x| |umap-learn/0.5.3-foss-2021a|x|x|x|x|x|x| |umap-learn/0.4.6-fosscuda-2020b|-|-|-|-|x|-| + + +### umap-learn/0.5.5-foss-2023a + +This is a list of extensions included in the module: + +pynndescent-0.5.11, umap-learn-0.5.5 + +### umap-learn/0.5.3-foss-2022a + +This is a list of extensions included in the module: + +pynndescent-0.5.7, umap-learn-0.5.3 + +### umap-learn/0.5.3-foss-2021a + +This is a list of extensions included in the module: + +pynndescent-0.5.7, umap-learn-0.5.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/umi4cPackage.md b/mkdocs/docs/HPC/only/gent/available_software/detail/umi4cPackage.md index ce647377bba3..db50e3d827f0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/umi4cPackage.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/umi4cPackage.md @@ -6,6 +6,10 @@ hide: umi4cPackage ============ + +umi4cPackage is a processing and analysis pipeline for UMI-4C experiment. + +https://github.com/tanaylab/umi4cpackage # Available modules @@ -17,7 +21,7 @@ To start using umi4cPackage, load one of these modules using a `module load` com module load umi4cPackage/20200116-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainties.md b/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainties.md index 1534c340272e..b92102ae76a5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainties.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainties.md @@ -6,6 +6,10 @@ hide: uncertainties ============= + +Transparent calculations with uncertainties on the quantities involved (aka error propagation); fast calculation of derivatives + +http://uncertainties-python-package.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using uncertainties, load one of these modules using a `module load` co module load uncertainties/3.1.7-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |uncertainties/3.1.7-foss-2021b|x|x|x|x|x|x| + + +### uncertainties/3.1.7-foss-2021b + +This is a list of extensions included in the module: + +uncertainties-3.1.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainty-calibration.md b/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainty-calibration.md index a6c5218a4ce4..ad1a80294aca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainty-calibration.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainty-calibration.md @@ -6,6 +6,10 @@ hide: uncertainty-calibration ======================= + +Python library to measure the calibration error of models, including confidence intervals computed byBootstrap resampling, and code to recalibrate models. + +https://github.com/p-lambda/verified_calibration # Available modules @@ -17,8 +21,15 @@ To start using uncertainty-calibration, load one of these modules using a `modul module load uncertainty-calibration/0.0.9-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |uncertainty-calibration/0.0.9-foss-2021b|x|x|x|-|x|x| + + +### uncertainty-calibration/0.0.9-foss-2021b + +This is a list of extensions included in the module: + +parameterized-0.8.1, uncertainty-calibration-0.0.9 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/unimap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/unimap.md index 0d808be67a75..5261a5298de8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/unimap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/unimap.md @@ -6,6 +6,10 @@ hide: unimap ====== + +Unimap is a fork of minimap2 optimized for assembly-to-referencealignment. It integrates the minigraph chaining algorithm and can align throughlong INDELs (up to 100kb by default) much faster than minimap2. Unimap is abetter fit for resolving segmental duplications and is recommended over minimap2for alignment between high-quality assemblies.Unimap does not replace minimap2 for other types of alignment. It drops thesupport of multi-part index and short-read mapping. Its long-read alignment isdifferent from minimap2 but is not necessarily better. Unimap is more of aspecialized minimap2 at the moment. + +https://github.com/lh3/unimap # Available modules @@ -17,7 +21,7 @@ To start using unimap, load one of these modules using a `module load` command l module load unimap/0.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/unixODBC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/unixODBC.md index fe2c644aeaac..fd3f82824326 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/unixODBC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/unixODBC.md @@ -6,6 +6,10 @@ hide: unixODBC ======== + +unixODBC provides a uniform interface betweenapplication and database driver + +https://www.unixodbc.org # Available modules @@ -17,7 +21,7 @@ To start using unixODBC, load one of these modules using a `module load` command module load unixODBC/2.3.11-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/utf8proc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/utf8proc.md index cde84608676b..f6b4d52e351c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/utf8proc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/utf8proc.md @@ -6,6 +6,10 @@ hide: utf8proc ======== + +utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding. + +https://github.com/JuliaStrings/utf8proc # Available modules @@ -17,7 +21,7 @@ To start using utf8proc, load one of these modules using a `module load` command module load utf8proc/2.8.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/util-linux.md b/mkdocs/docs/HPC/only/gent/available_software/detail/util-linux.md index aa07c0680d22..5f457b8b6614 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/util-linux.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/util-linux.md @@ -6,6 +6,10 @@ hide: util-linux ========== + +Set of Linux utilities + +http://www.kernel.org/pub/linux/utils/util-linux # Available modules @@ -17,7 +21,7 @@ To start using util-linux, load one of these modules using a `module load` comma module load util-linux/2.39-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vConTACT2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vConTACT2.md index 1b4562f27bdd..a002c344b05c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vConTACT2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vConTACT2.md @@ -6,6 +6,10 @@ hide: vConTACT2 ========= + +vConTACT2 is a tool to perform guilt-by-contig-association classification of viral genomic sequence data. + +https://bitbucket.org/MAVERICLab/vcontact2 # Available modules @@ -17,8 +21,15 @@ To start using vConTACT2, load one of these modules using a `module load` comman module load vConTACT2/0.11.3-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |vConTACT2/0.11.3-foss-2022a|x|x|x|x|x|x| + + +### vConTACT2/0.11.3-foss-2022a + +This is a list of extensions included in the module: + +click-log-0.1.8, clusterone-0.15.3, coreapi-2.3.3, coreapi-cli-1.0.9, coreschema-0.0.4, iso8601-1.1.0, itypes-1.2.0, pytz-deprecation-shim-0.1.0.post0, raven-6.10.0, terminaltables-3.1.10, tzdata-2022.7, tzlocal-4.2, uritemplate-4.1.1, vConTACT2-0.11.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vaeda.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vaeda.md index 6b63f6f8cf0f..58dbc8bcef07 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vaeda.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vaeda.md @@ -6,6 +6,10 @@ hide: vaeda ===== + +vaeda (variaitonal auto-encoder (vae) for doublet annotation (da)) is a Python package for doubletannotation in single cell RNA-sequencing. + +https://github.com/kostkalab/vaeda # Available modules @@ -17,8 +21,15 @@ To start using vaeda, load one of these modules using a `module load` command li module load vaeda/0.0.30-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |vaeda/0.0.30-foss-2022a|x|x|x|x|x|x| + + +### vaeda/0.0.30-foss-2022a + +This is a list of extensions included in the module: + +kneed-0.8.1, vaeda-0.0.30 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vbz_compression.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vbz_compression.md index e09652902ba4..01c6b3101cbb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vbz_compression.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vbz_compression.md @@ -6,6 +6,10 @@ hide: vbz_compression =============== + +VBZ HDF5 plugin for nanopolish + +https://github.com/nanoporetech/vbz_compression # Available modules @@ -17,7 +21,7 @@ To start using vbz_compression, load one of these modules using a `module load` module load vbz_compression/1.0.1-gompi-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vcflib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vcflib.md index f0e087d17294..a353aa3901cd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vcflib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vcflib.md @@ -6,6 +6,10 @@ hide: vcflib ====== + +vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed genetic variations between individuals. + +https://github.com/vcflib/vcflib # Available modules @@ -17,7 +21,7 @@ To start using vcflib, load one of these modules using a `module load` command l module load vcflib/1.0.9-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/velocyto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/velocyto.md index 081ceabcfa95..ff9e8658a0d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/velocyto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/velocyto.md @@ -6,6 +6,10 @@ hide: velocyto ======== + +Velocyto is a library for the analysis of RNA velocity. + +https://velocyto.org/velocyto.py/ # Available modules @@ -17,9 +21,22 @@ To start using velocyto, load one of these modules using a `module load` command module load velocyto/0.17.17-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |velocyto/0.17.17-intel-2020a-Python-3.8.2|-|x|x|-|x|x| |velocyto/0.17.17-foss-2022a|x|x|x|x|x|x| + + +### velocyto/0.17.17-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +loompy-3.0.6, numpy_groupies-0.9.13, velocyto-0.17.17 + +### velocyto/0.17.17-foss-2022a + +This is a list of extensions included in the module: + +loompy-3.0.7, numpy_groupies-0.9.20, velocyto-0.17.17 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/virtualenv.md b/mkdocs/docs/HPC/only/gent/available_software/detail/virtualenv.md index 54ffe8f0a539..dc70f85552b2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/virtualenv.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/virtualenv.md @@ -6,6 +6,10 @@ hide: virtualenv ========== + +A tool for creating isolated virtual python environments. + +https://github.com/pypa/virtualenv # Available modules @@ -17,9 +21,22 @@ To start using virtualenv, load one of these modules using a `module load` comma module load virtualenv/20.24.6-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |virtualenv/20.24.6-GCCcore-13.2.0|x|x|x|x|x|x| |virtualenv/20.23.1-GCCcore-12.3.0|x|x|x|x|x|x| + + +### virtualenv/20.24.6-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +distlib-0.3.7, filelock-3.13.0, platformdirs-3.11.0, virtualenv-20.24.6 + +### virtualenv/20.23.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +distlib-0.3.6, filelock-3.12.2, platformdirs-3.8.0, virtualenv-20.23.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vispr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vispr.md index 154e6dfb9e7a..c2cfd633b220 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vispr.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vispr.md @@ -6,6 +6,10 @@ hide: vispr ===== + +VISPR - A visualization framework for CRISPR data. + +https://pypi.org/project/vispr/ # Available modules @@ -17,7 +21,7 @@ To start using vispr, load one of these modules using a `module load` command li module load vispr/0.4.14-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vitessce-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vitessce-python.md index f5ed47d97cee..0371c32db3ff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vitessce-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vitessce-python.md @@ -6,6 +6,10 @@ hide: vitessce-python =============== + +Python API and Jupyter widget facilitating interactivevisualization of spatial single-cell data with Vitessce. + +https://github.com/vitessce/vitessce-python # Available modules @@ -17,8 +21,15 @@ To start using vitessce-python, load one of these modules using a `module load` module load vitessce-python/20230222-foss-2022a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |vitessce-python/20230222-foss-2022a|x|x|x|x|x|x| + + +### vitessce-python/20230222-foss-2022a + +This is a list of extensions included in the module: + +anndata-0.8.0, black-23.1.0, fsspec-2023.1.0, hatch-fancy-pypi-readme-22.8.0, hatch-vcs-0.3.0, hatchling-1.11.1, mypy_extensions-1.0.0, natsort-8.2.0, negspy-0.2.24, ome-zarr-0.2.1, pathspec-0.10.1, tifffile-2022.10.10, vitessce-python-20230222 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vitessceR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vitessceR.md index f75e6128c6aa..be49bf26bed4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vitessceR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vitessceR.md @@ -6,6 +6,10 @@ hide: vitessceR ========= + +Vitessce is a visual integration tool for exploration of spatial single-cell experiments. + +https://github.com/vitessce/vitessceR # Available modules @@ -17,8 +21,15 @@ To start using vitessceR, load one of these modules using a `module load` comman module load vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1|x|x|x|x|x|x| + + +### vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +plumber-1.2.1, sodium-1.2.1, vitessceR-0.99.0-20230110 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vsc-mympirun.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vsc-mympirun.md index 99ae51abc36b..7ff67fc94936 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vsc-mympirun.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vsc-mympirun.md @@ -6,6 +6,10 @@ hide: vsc-mympirun ============ + +mympirun is a tool to make it easier for users of HPC clusters torun MPI programs with good performance. + +https://github.com/hpcugent/vsc-mympirun # Available modules @@ -17,7 +21,7 @@ To start using vsc-mympirun, load one of these modules using a `module load` com module load vsc-mympirun/5.3.1 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -34,3 +38,82 @@ module load vsc-mympirun/5.3.1 |vsc-mympirun/5.2.2|-|x|-|-|-|-| |vsc-mympirun/5.2.0|-|x|-|-|-|-| |vsc-mympirun/5.1.0|-|x|-|-|-|-| + + +### vsc-mympirun/5.3.1 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.3, IPy-1.01, mock-5.0.2, pbr-5.11.1, setuptools-41.6.0, vsc-base-3.5.3, vsc-install-0.18.5, vsc-mympirun-5.3.1 + +### vsc-mympirun/5.3.0 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.3, IPy-1.01, mock-5.0.1, pbr-5.11.1, setuptools-41.6.0, vsc-base-3.5.2, vsc-install-0.18.0, vsc-mympirun-5.3.0 + +### vsc-mympirun/5.2.11 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.1, setuptools-41.6.0, vsc-base-3.4.3, vsc-install-0.17.22, vsc-mympirun-5.2.11 + +### vsc-mympirun/5.2.10 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.1, setuptools-41.6.0, vsc-base-3.4.3, vsc-install-0.17.21, vsc-mympirun-5.2.10 + +### vsc-mympirun/5.2.9 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.1, setuptools-41.6.0, vsc-base-3.4.3, vsc-install-0.17.21, vsc-mympirun-5.2.9 + +### vsc-mympirun/5.2.7 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.0, setuptools-41.6.0, vsc-base-3.4.0, vsc-install-0.17.19, vsc-mympirun-5.2.7 + +### vsc-mympirun/5.2.6 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.6.0, setuptools-41.6.0, vsc-base-3.3.1, vsc-install-0.17.15, vsc-mympirun-5.2.6 + +### vsc-mympirun/5.2.5 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.5 + +### vsc-mympirun/5.2.4 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.4 + +### vsc-mympirun/5.2.3 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.3 + +### vsc-mympirun/5.2.2 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.2 + +### vsc-mympirun/5.2.0 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.0 + +### vsc-mympirun/5.1.0 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.4.5, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.15.14, vsc-mympirun-5.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vt.md index 5332e2b7025f..ad329c2a3ef9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vt.md @@ -6,6 +6,10 @@ hide: vt == + +A tool set for short variant discovery in genetic sequence data. + +https://genome.sph.umich.edu/wiki/Vt # Available modules @@ -17,7 +21,7 @@ To start using vt, load one of these modules using a `module load` command like: module load vt/0.57721-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wandb.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wandb.md index b2d0a5848556..9eaeed57227c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wandb.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wandb.md @@ -6,6 +6,10 @@ hide: wandb ===== + +CLI and Python API for Weights and Biases: a tool for visualizing and trackingyour machine learning experiments. + +https://www.wandb.com/ # Available modules @@ -17,9 +21,22 @@ To start using wandb, load one of these modules using a `module load` command li module load wandb/0.13.6-GCC-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |wandb/0.13.6-GCC-11.3.0|x|x|x|-|x|x| |wandb/0.13.4-GCCcore-11.3.0|-|-|x|-|x|-| + + +### wandb/0.13.6-GCC-11.3.0 + +This is a list of extensions included in the module: + +docker-pycreds-0.4.0, pathtools-0.1.2, promise-2.3, sentry-sdk-1.11.1, setproctitle-1.3.2, shortuuid-1.0.11, urllib3-1.26.13, wandb-0.13.6 + +### wandb/0.13.4-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +charset-normalizer-2.0.12, docker-pycreds-0.4.0, pathtools-0.1.2, promise-2.3, sentry-sdk-1.8.0, setproctitle-1.3.2, shortuuid-1.0.9, termcolor-1.1.0, wandb-0.13.4, yaspin-2.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/waves2Foam.md b/mkdocs/docs/HPC/only/gent/available_software/detail/waves2Foam.md index edf17ed94f68..a6e16e56352a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/waves2Foam.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/waves2Foam.md @@ -6,6 +6,10 @@ hide: waves2Foam ========== + +The library waves2Foam is a toolbox used to generate and absorb free surface water waves. + +https://openfoamwiki.net/index.php/Contrib/waves2Foam # Available modules @@ -17,7 +21,7 @@ To start using waves2Foam, load one of these modules using a `module load` comma module load waves2Foam/20200703-foss-2019b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wget.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wget.md index 53e8fb26e86b..b79708d22377 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wget.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wget.md @@ -6,6 +6,10 @@ hide: wget ==== + +GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It is a non-interactive commandline tool, so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc. + +https://www.gnu.org/software/wget # Available modules @@ -17,7 +21,7 @@ To start using wget, load one of these modules using a `module load` command lik module load wget/1.21.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wgsim.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wgsim.md index 316c4977a991..9efc7fefc6be 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wgsim.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wgsim.md @@ -6,6 +6,10 @@ hide: wgsim ===== + +Wgsim is a small tool for simulating sequence reads from a reference genome. + +https://github.com/lh3/wgsim/ # Available modules @@ -17,7 +21,7 @@ To start using wgsim, load one of these modules using a `module load` command li module load wgsim/20111017-GCC-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/worker.md b/mkdocs/docs/HPC/only/gent/available_software/detail/worker.md index c8ed6e4f6aca..2e70f29dc099 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/worker.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/worker.md @@ -6,6 +6,10 @@ hide: worker ====== + +The Worker framework has been developed to help deal with parameter exploration experiments that would otherwise result in many jobs, forcing the user resort to scripting to retain her sanity; see also https://vscentrum.be/neutral/documentation/cluster-doc/running-jobs/worker-framework. + +https://github.com/gjbex/worker # Available modules @@ -17,7 +21,7 @@ To start using worker, load one of these modules using a `module load` command l module load worker/1.6.13-iimpi-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wpebackend-fdo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wpebackend-fdo.md index 59b59dff625d..90de993c1a1b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wpebackend-fdo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wpebackend-fdo.md @@ -6,6 +6,10 @@ hide: wpebackend-fdo ============== + +WPE WebKit allows embedders to create simple and performant systems based on Web platform technologies. It is a WebKit port designed with flexibility and hardware acceleration in mind, leveraging common 3D graphics APIs for best performance. + +https://wpewebkit.org/ # Available modules @@ -17,7 +21,7 @@ To start using wpebackend-fdo, load one of these modules using a `module load` c module load wpebackend-fdo/1.13.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wrapt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wrapt.md index 969feca677cb..351f9f8b32c1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wrapt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wrapt.md @@ -6,6 +6,10 @@ hide: wrapt ===== + +The aim of the wrapt module is to provide a transparent objectproxy for Python, which can be used as the basis for the construction offunction wrappers and decorator functions. + +https://pypi.org/project/wrapt/ # Available modules @@ -17,10 +21,29 @@ To start using wrapt, load one of these modules using a `module load` command li module load wrapt/1.15.0-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |wrapt/1.15.0-gfbf-2023a|x|x|x|x|x|x| |wrapt/1.15.0-foss-2022b|x|x|x|x|x|x| |wrapt/1.15.0-foss-2022a|x|x|x|x|x|x| + + +### wrapt/1.15.0-gfbf-2023a + +This is a list of extensions included in the module: + +wrapt-1.15.0 + +### wrapt/1.15.0-foss-2022b + +This is a list of extensions included in the module: + +wrapt-1.15.0 + +### wrapt/1.15.0-foss-2022a + +This is a list of extensions included in the module: + +wrapt-1.15.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wrf-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wrf-python.md index 467f64cc836f..d25819524dfa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wrf-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wrf-python.md @@ -6,6 +6,10 @@ hide: wrf-python ========== + +A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model. + +https://wrf-python.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using wrf-python, load one of these modules using a `module load` comma module load wrf-python/1.3.4.1-foss-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |wrf-python/1.3.4.1-foss-2023a|x|x|x|x|x|x| + + +### wrf-python/1.3.4.1-foss-2023a + +This is a list of extensions included in the module: + +wrapt-1.16.0, wrf-python-1.3.4.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wtdbg2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wtdbg2.md index 70520e7038ac..63866206474a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wtdbg2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wtdbg2.md @@ -6,6 +6,10 @@ hide: wtdbg2 ====== + +Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. + +https://github.com/ruanjue/wtdbg2 # Available modules @@ -17,7 +21,7 @@ To start using wtdbg2, load one of these modules using a `module load` command l module load wtdbg2/2.5-GCCcore-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wxPython.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wxPython.md index f8df232b3c05..102086bcd760 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wxPython.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wxPython.md @@ -6,6 +6,10 @@ hide: wxPython ======== + +Wraps the wxWidgets C++ toolkit and provides access to the user interface portions of the wxWidgets API, enabling Python applications to have a native GUI on Windows, Macs or Unix systems, with a native look and feel and requiring very little (if any) platform specific code. + +https://www.wxpython.org/ # Available modules @@ -17,7 +21,7 @@ To start using wxPython, load one of these modules using a `module load` command module load wxPython/4.2.0-foss-2021b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wxWidgets.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wxWidgets.md index e779513e3500..f254e8ff2f60 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wxWidgets.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wxWidgets.md @@ -6,6 +6,10 @@ hide: wxWidgets ========= + +wxWidgets is a C++ library that lets developers createapplications for Windows, Mac OS X, Linux and other platforms with asingle code base. It has popular language bindings for Python, Perl,Ruby and many other languages, and unlike other cross-platform toolkits,wxWidgets gives applications a truly native look and feel because ituses the platform's native API rather than emulating the GUI. + +https://www.wxwidgets.org # Available modules @@ -17,7 +21,7 @@ To start using wxWidgets, load one of these modules using a `module load` comman module load wxWidgets/3.2.0-GCC-11.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/x264.md b/mkdocs/docs/HPC/only/gent/available_software/detail/x264.md index 648e22f337b4..6f606ffe54f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/x264.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/x264.md @@ -6,6 +6,10 @@ hide: x264 ==== + +x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. + +https://www.videolan.org/developers/x264.html # Available modules @@ -17,7 +21,7 @@ To start using x264, load one of these modules using a `module load` command lik module load x264/20230226-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/x265.md b/mkdocs/docs/HPC/only/gent/available_software/detail/x265.md index f5575aec87a3..d3ee9da01e55 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/x265.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/x265.md @@ -6,6 +6,10 @@ hide: x265 ==== + +x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. + +https://x265.org/ # Available modules @@ -17,7 +21,7 @@ To start using x265, load one of these modules using a `module load` command lik module load x265/3.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xESMF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xESMF.md index cc1c0ca158b9..e00a366b6a40 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xESMF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xESMF.md @@ -6,6 +6,10 @@ hide: xESMF ===== + +xESMF: Universal Regridder for Geospatial Data + +https://xesmf.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using xESMF, load one of these modules using a `module load` command li module load xESMF/0.3.0-intel-2020b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xarray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xarray.md index e58011ac2392..2af0538eef9e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xarray.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xarray.md @@ -6,6 +6,10 @@ hide: xarray ====== + +xarray (formerly xray) is an open source project and Python package that aims to bring the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the core pandas data structures. + +https://github.com/pydata/xarray # Available modules @@ -17,7 +21,7 @@ To start using xarray, load one of these modules using a `module load` command l module load xarray/2023.9.0-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | @@ -32,3 +36,16 @@ module load xarray/2023.9.0-gfbf-2023a |xarray/0.16.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| |xarray/0.15.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| |xarray/0.15.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### xarray/2023.9.0-gfbf-2023a + +This is a list of extensions included in the module: + +xarray-2023.9.0 + +### xarray/2023.4.2-gfbf-2022b + +This is a list of extensions included in the module: + +xarray-2023.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xorg-macros.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xorg-macros.md index 77f94b1eb15c..bfa66a43adc9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xorg-macros.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xorg-macros.md @@ -6,6 +6,10 @@ hide: xorg-macros =========== + +X.org macros utilities. + +https://cgit.freedesktop.org/xorg/util/macros # Available modules @@ -17,7 +21,7 @@ To start using xorg-macros, load one of these modules using a `module load` comm module load xorg-macros/1.20.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xprop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xprop.md index 1a45be1675d5..e1f9b2392eb5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xprop.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xprop.md @@ -6,6 +6,10 @@ hide: xprop ===== + +The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information. + +https://www.x.org/wiki/ # Available modules @@ -17,7 +21,7 @@ To start using xprop, load one of these modules using a `module load` command li module load xprop/1.2.5-GCCcore-10.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xproto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xproto.md index f7ad71bb671d..2963e7ffa9ef 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xproto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xproto.md @@ -6,6 +6,10 @@ hide: xproto ====== + +X protocol and ancillary headers + +https://www.freedesktop.org/wiki/Software/xlibs # Available modules @@ -17,7 +21,7 @@ To start using xproto, load one of these modules using a `module load` command l module load xproto/7.0.31-GCCcore-10.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xtb.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xtb.md index 5d33e8224818..8d282474389d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xtb.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xtb.md @@ -6,6 +6,10 @@ hide: xtb === + +xtb - An extended tight-binding semi-empirical program package. + +https://xtb-docs.readthedocs.io # Available modules @@ -17,7 +21,7 @@ To start using xtb, load one of these modules using a `module load` command like module load xtb/6.6.1-gfbf-2023a ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xxd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xxd.md index b5069d76047f..569d856837e3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xxd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xxd.md @@ -6,6 +6,10 @@ hide: xxd === + +xxd is part of the VIM package and this will only install xxd, not vim!xxd converts to/from hexdumps of binary files. + +https://www.vim.org # Available modules @@ -17,7 +21,7 @@ To start using xxd, load one of these modules using a `module load` command like module load xxd/9.0.2112-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/yaff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/yaff.md index 7c470ef7d000..bafc907521b2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/yaff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/yaff.md @@ -6,6 +6,10 @@ hide: yaff ==== + +Yaff stands for 'Yet another force field'. It is a pythonic force-field code. + +https://molmod.github.io/yaff/ # Available modules @@ -17,7 +21,7 @@ To start using yaff, load one of these modules using a `module load` command lik module load yaff/1.6.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/yaml-cpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/yaml-cpp.md index bc7e20c05532..161942698e10 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/yaml-cpp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/yaml-cpp.md @@ -6,6 +6,10 @@ hide: yaml-cpp ======== + +yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec + +https://github.com/jbeder/yaml-cpp # Available modules @@ -17,7 +21,7 @@ To start using yaml-cpp, load one of these modules using a `module load` command module load yaml-cpp/0.7.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zUMIs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zUMIs.md index 7ef18e883c93..828959338dee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zUMIs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zUMIs.md @@ -6,6 +6,10 @@ hide: zUMIs ===== + +A fast and flexible pipeline to process RNA sequencing data with UMIs. + +https://github.com/sdparekh/zUMIs # Available modules @@ -17,7 +21,7 @@ To start using zUMIs, load one of these modules using a `module load` command li module load zUMIs/2.9.7-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zarr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zarr.md index 23cf0d80a607..9dfab567c4a5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zarr.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zarr.md @@ -6,6 +6,10 @@ hide: zarr ==== + +Zarr is a Python package providing an implementation of compressed, chunked, N-dimensional arrays, designed for use in parallel computing. + +https://zarr.readthedocs.io/en/stable/ # Available modules @@ -17,10 +21,29 @@ To start using zarr, load one of these modules using a `module load` command lik module load zarr/2.16.0-foss-2022b ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | |zarr/2.16.0-foss-2022b|x|x|x|x|x|x| |zarr/2.13.3-foss-2022a|x|x|x|x|x|x| |zarr/2.13.3-foss-2021b|x|x|x|x|x|x| + + +### zarr/2.16.0-foss-2022b + +This is a list of extensions included in the module: + +asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.11.0, zarr-2.16.0 + +### zarr/2.13.3-foss-2022a + +This is a list of extensions included in the module: + +asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.10.2, zarr-2.13.3 + +### zarr/2.13.3-foss-2021b + +This is a list of extensions included in the module: + +asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.10.2, zarr-2.13.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zfp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zfp.md index c359c65f99db..05c58caf8b7f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zfp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zfp.md @@ -6,6 +6,10 @@ hide: zfp === + +zfp is a compressed format for representing multidimensional floating-point and integer arrays.zfp provides compressed-array classes that support high throughput read and write random access to individual arrayelements. zfp also supports serial and parallel (OpenMP and CUDA) compression of whole arrays, e.g., for applicationsthat read and write large data sets to and from disk. + +https://github.com/LLNL/zfp # Available modules @@ -17,7 +21,7 @@ To start using zfp, load one of these modules using a `module load` command like module load zfp/1.0.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zlib-ng.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zlib-ng.md index 7c5574d370f9..27f5f4c49801 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zlib-ng.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zlib-ng.md @@ -6,6 +6,10 @@ hide: zlib-ng ======= + +zlib data compression library for the next generation systems + +https://github.com/zlib-ng/zlib-ng # Available modules @@ -17,7 +21,7 @@ To start using zlib-ng, load one of these modules using a `module load` command module load zlib-ng/2.0.7-GCCcore-11.3.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zlib.md index 090bc520e359..486b28c6d28c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zlib.md @@ -6,6 +6,10 @@ hide: zlib ==== + +zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. + +http://www.zlib.net/ # Available modules @@ -17,7 +21,7 @@ To start using zlib, load one of these modules using a `module load` command lik module load zlib/1.2.13-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zstd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zstd.md index 416e94d08119..cc9c6ff94cde 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zstd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zstd.md @@ -6,6 +6,10 @@ hide: zstd ==== + +Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. + +https://facebook.github.io/zstd # Available modules @@ -17,7 +21,7 @@ To start using zstd, load one of these modules using a `module load` command lik module load zstd/1.5.5-GCCcore-13.2.0 ``` -*(This data was automatically generated on Wed, 06 Mar 2024 at 15:51:26 CET)* +*(This data was automatically generated on Fri, 08 Mar 2024 at 09:35:19 CET)* | |accelgor|doduo|donphan|gallade|joltik|skitty| | :---: | :---: | :---: | :---: | :---: | :---: | :---: | diff --git a/scripts/available_software/available_software.py b/scripts/available_software/available_software.py index f04744dcd5fa..9011f8aec6dc 100644 --- a/scripts/available_software/available_software.py +++ b/scripts/available_software/available_software.py @@ -59,19 +59,29 @@ def main(): ) path_data_dir = os.path.join(root_dir, "mkdocs/docs/HPC/only/gent/available_software/data") - # Generate the JSON overviews and detail markdown pages. + # Generate the JSON overviews if args.eessi: - modules = modules_eesi() + modules = modules_eessi() else: - modules = modules_ugent() + modules, paths = modules_ugent() + print(paths) print(modules) print("Generate JSON overview... ", end="", flush=True) generate_json_overview(modules, path_data_dir) print("Done!") + + # Generate the JSON detail + json_data = generate_json_detailed_data(modules) + if args.eessi: + json_data = json_data + else: + json_data = get_extra_info_ugent(json_data, paths) print("Generate JSON detailed... ", end="", flush=True) - json_path = generate_json_detailed(modules, path_data_dir) + json_path = generate_json_detailed(json_data, path_data_dir) print("Done!") + + # Generate detail markdown pages print("Generate detailed pages... ", end="", flush=True) generate_detail_pages(json_path, os.path.join(root_dir, "mkdocs/docs/HPC/only/gent/available_software/detail")) print("Done!") @@ -168,6 +178,35 @@ def module_whatis(name: str) -> dict: return whatis +def module_info(info: str) -> dict: + """ + Function to parse through lua file. + + @param info: String with the contents of the lua file. + """ + whatis = {} + data = np.array(info.split("\n")) + # index of start description to handle multi lined description + i = np.flatnonzero(np.char.startswith(data, "whatis([==[Description"))[0] + if np.char.endswith(data[i], "]==])"): + content = re.sub(pattern=r'whatis\(\[==\[(.*)\]==\]\)', repl='\\1', string=data[i]).strip('"') + else: + description = re.sub(pattern=r'whatis\(\[==\[(.*)', repl='\\1', string=data[i]).strip('"') + while not np.char.endswith(data[i], "]==])"): + i += 1 + description += data[i] + content = re.sub(pattern=r'(.*)\]==\]\)', repl='\\1', string=description).strip('"') + key, value = tuple(content.split(":", maxsplit=1)) + whatis[key.strip()] = value.strip() + + for line in data[np.char.startswith(data, "whatis")]: + if not np.char.startswith(line, "whatis([==[Description"): + content = re.sub(pattern=r'whatis\(\[==\[(.*)\]==\]\)', repl='\\1', string=line).strip('"') + key, value = tuple(content.split(":", maxsplit=1)) + whatis[key.strip()] = value.strip() + return whatis + + # -------------------------------------------------------------------------------------------------------- # Fetch data EESSI # -------------------------------------------------------------------------------------------------------- @@ -199,7 +238,7 @@ def clusters_eessi() -> np.ndarray: return clusters -def modules_eesi() -> dict: +def modules_eessi() -> dict: """ Returns names of all software module that are installed on EESSI. They are grouped by cluster. @@ -250,6 +289,15 @@ def filter_fn_gent_modules(data: np.ndarray) -> np.ndarray: ] +def filter_fn_gent_software_path(data: np.ndarray) -> np.ndarray: + """ + Filter function for the software path of the cluster + @param data: Output + @return: Filtered output + """ + return data[np.char.endswith(data, "/modules/all:")] + + def clusters_ugent() -> np.ndarray: """ Returns all the cluster names of the HPC at UGent. @@ -259,6 +307,45 @@ def clusters_ugent() -> np.ndarray: return module_avail(name="cluster/", filter_fn=filter_fn_gent_cluster) +def get_extra_info_ugent(json_data, paths) -> dict: + """ + add a list of extentions to all modules with extensions + @return: Dictionary with all the modules and their site_packages + """ + modules = json_data['software'] + for software in modules: + for mod in modules[software]['versions']: + cluster = modules[software]['versions'][mod]['clusters'][0] + if software == "Java": + # Java has a strange naming sceme which causes probplems + continue + if mod in ["imkl/2020.4.304-NVHPC-21.2"]: + base_path = "/apps/gent/RHEL8/cascadelake-volta-ib/modules/all/" + elif mod in ['OpenFold/1.0.1-foss-2022a-CUDA-11.7.0', + 'OpenMM/7.7.0-foss-2022a-CUDA-11.7.0', + 'PyTorch-Lightning/1.7.7-foss-2022a-CUDA-11.7.0', + 'PyTorch/1.12.1-foss-2022a-CUDA-11.7.0', + 'Triton/1.1.1-foss-2022a-CUDA-11.7.0']: + base_path = "/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all/" + elif cluster == "donphan": + base_path = "/apps/gent/RHEL8/cascadelake-ib/modules/all/" + elif cluster == "joltik": + base_path = "/apps/gent/RHEL8/cascadelake-volta-ib/modules/all/" + else: + base_path = paths[cluster][0][:-1] + "/" + path = base_path + mod + ".lua" + file = open(path, "r") + info = file.read() + if info != "": + whatis = module_info(info) + json_data['software'][software]['description'] = whatis['Description'] + if "Homepage" in whatis.keys(): + json_data['software'][software]['homepage'] = whatis['Homepage'] + if "Extensions" in whatis.keys(): + json_data["software"][software]["versions"][mod]["extensions"] = whatis['Extensions'] + return json_data + + def modules_ugent() -> dict: """ Returns names of all software module that are installed on the HPC on UGent. @@ -267,15 +354,17 @@ def modules_ugent() -> dict: """ print("Start collecting modules:") data = {} + mapping = {} for cluster in clusters_ugent(): print(f"\t Collecting available modules for {cluster}... ", end="", flush=True) module_swap(cluster) cluster_name = cluster.split("/", maxsplit=1)[1] + mapping[cluster_name] = module_avail(filter_fn=filter_fn_gent_software_path) data[cluster_name] = module_avail(filter_fn=filter_fn_gent_modules) print(f"found {len(data[cluster_name])} modules!") print("All data collected!\n") - return data + return data, mapping # -------------------------------------------------------------------------------------------------------- @@ -343,7 +432,7 @@ def generate_software_table_data(software_data: dict, clusters: list) -> list: row = [module_name] for cluster in clusters: - row += ("x" if cluster in available else "-") + row += ("x" if cluster in available["clusters"] else "-") table_data += row return table_data @@ -370,6 +459,13 @@ def generate_software_detail_page( filename = f"{path}/{software_name}.md" md_file = MdUtils(file_name=filename, title=f"{software_name}") + if 'description' in software_data.keys(): + description = software_data['description'] + md_file.new_paragraph(f"{description}") + if 'homepage' in software_data.keys(): + homepage = software_data['homepage'] + md_file.new_paragraph(f"{homepage}") + md_file.new_header(level=1, title="Available modules") md_file.new_paragraph(f"The overview below shows which {software_name} installations are available per HPC-UGent " @@ -386,6 +482,13 @@ def generate_software_detail_page( text=generate_software_table_data(sorted_versions, clusters) ) + for version, details in list(sorted_versions.items())[::-1]: + if 'extensions' in details: + md_file.new_paragraph(f"### {version}") + md_file.new_paragraph("This is a list of extensions included in the module:") + packages = details['extensions'] + md_file.new_paragraph(f"{packages}") + md_file.create_md_file() # Remove the TOC @@ -570,20 +673,20 @@ def generate_json_detailed_data(modules: dict) -> dict: # If the version is not yet present, add it. if mod not in json_data["software"][software]["versions"]: - json_data["software"][software]["versions"][mod] = [] + json_data["software"][software]["versions"][mod] = {'clusters': []} # If the cluster is not yet present, add it. if cluster not in json_data["software"][software]["clusters"]: json_data["software"][software]["clusters"].append(cluster) # If the cluster is not yet present, add it. - if cluster not in json_data["software"][software]["versions"][mod]: - json_data["software"][software]["versions"][mod].append(cluster) + if cluster not in json_data["software"][software]["versions"][mod]["clusters"]: + json_data["software"][software]["versions"][mod]["clusters"].append(cluster) return json_data -def generate_json_detailed(modules: dict, path_data_dir: str) -> str: +def generate_json_detailed(json_data: dict, path_data_dir: str) -> str: """ Generate the detailed JSON. @@ -591,7 +694,6 @@ def generate_json_detailed(modules: dict, path_data_dir: str) -> str: @param path_data_dir: Path to the directory where the JSON will be placed. @return: Absolute path to the json file. """ - json_data = generate_json_detailed_data(modules) filepath = os.path.join(path_data_dir, "json_data_detail.json") with open(filepath, 'w') as outfile: json.dump(json_data, outfile) diff --git a/scripts/available_software/test.sh b/scripts/available_software/test.sh index 85fd00b1a50f..33e8376a8153 100755 --- a/scripts/available_software/test.sh +++ b/scripts/available_software/test.sh @@ -1,3 +1,3 @@ #!/bin/bash -PYTHONPATH=$PWD:$PYTHONPATH pytest -v -s \ No newline at end of file +PYTHONPATH=$PWD:$PYTHONPATH pytest -v -s diff --git a/scripts/available_software/tests/data/test_json_simple_sol_detail.json b/scripts/available_software/tests/data/test_json_simple_sol_detail.json index 64bc33891323..8ff9aa66455b 100644 --- a/scripts/available_software/tests/data/test_json_simple_sol_detail.json +++ b/scripts/available_software/tests/data/test_json_simple_sol_detail.json @@ -1 +1 @@ -{"clusters": ["dialga", "pikachu"], "software": {"cfd": {"clusters": ["dialga", "pikachu"], "versions": {"cfd/1.0": ["dialga", "pikachu"], "cfd/2.0": ["dialga", "pikachu"], "cfd/24": ["dialga", "pikachu"], "cfd/5.0": ["dialga", "pikachu"], "cfd/2.0afqsdf": ["dialga", "pikachu"], "cfd/3.0": ["pikachu"]}}, "Markov": {"clusters": ["dialga"], "versions": {"Markov/hidden-1.0.5": ["dialga"], "Markov/hidden-1.0.10": ["dialga"]}}, "science": {"clusters": ["dialga", "pikachu"], "versions": {"science/5.3.0": ["dialga", "pikachu"], "science/7.2.0": ["dialga", "pikachu"]}}, "llm": {"clusters": ["pikachu"], "versions": {"llm/20230627": ["pikachu"]}}}, "time_generated": "Thu, 31 Aug 2023 at 14:00:22 CEST"} \ No newline at end of file +{"clusters": ["dialga", "pikachu"], "software": {"cfd": {"clusters": ["dialga", "pikachu"], "versions": {"cfd/1.0": {"clusters": ["dialga", "pikachu"]}, "cfd/2.0": {"clusters": ["dialga", "pikachu"]}, "cfd/24": {"clusters": ["dialga", "pikachu"]}, "cfd/5.0": {"clusters": ["dialga", "pikachu"]}, "cfd/2.0afqsdf": {"clusters": ["dialga", "pikachu"]}, "cfd/3.0": {"clusters": ["pikachu"]}}}, "Markov": {"clusters": ["dialga"], "versions": {"Markov/hidden-1.0.5": {"clusters": ["dialga"]}, "Markov/hidden-1.0.10": {"clusters": ["dialga"]}}}, "science": {"clusters": ["dialga", "pikachu"], "versions": {"science/5.3.0": {"clusters": ["dialga", "pikachu"]}, "science/7.2.0": {"clusters": ["dialga", "pikachu"]}}}, "llm": {"clusters": ["pikachu"], "versions": {"llm/20230627": {"clusters": ["pikachu"]}}}}, "time_generated": "Thu, 31 Aug 2023 at 14:00:22 CEST"} diff --git a/scripts/available_software/tests/test_data.py b/scripts/available_software/tests/test_data.py index 57a1b3b5073f..ff358c010fad 100644 --- a/scripts/available_software/tests/test_data.py +++ b/scripts/available_software/tests/test_data.py @@ -20,7 +20,7 @@ def setup_class(cls): # --------------------------- def test_data_ugent(self): - sol = modules_ugent() + sol = modules_ugent()[0] assert len(sol) == 2 assert len(sol["dialga"]) == 13 assert len(sol["pikachu"]) == 15 diff --git a/scripts/available_software/tests/test_json.py b/scripts/available_software/tests/test_json.py index dd84b92856ce..80df5c2cc401 100644 --- a/scripts/available_software/tests/test_json.py +++ b/scripts/available_software/tests/test_json.py @@ -1,7 +1,8 @@ from available_software import (generate_json_overview_data, generate_json_overview, modules_ugent, - generate_json_detailed) + generate_json_detailed, + generate_json_detailed_data) import os import json @@ -32,7 +33,7 @@ def teardown_class(cls): # --------------------------- def test_json_generate_simple(self): - modules = modules_ugent() + modules = modules_ugent()[0] json_data = generate_json_overview_data(modules) assert len(json_data.keys()) == 3 assert list(json_data["clusters"]) == ["dialga", "pikachu"] @@ -44,7 +45,7 @@ def test_json_generate_simple(self): } def test_json_simple(self): - modules = modules_ugent() + modules = modules_ugent()[0] json_path = generate_json_overview(modules, ".") with open(json_path) as json_data: data_generated = json.load(json_data) @@ -57,8 +58,9 @@ def test_json_simple(self): assert data_generated["clusters"] == data_solution["clusters"] def test_json_detail_simple(self): - modules = modules_ugent() - json_path = generate_json_detailed(modules, ".") + modules = modules_ugent()[0] + json_data = generate_json_detailed_data(modules) + json_path = generate_json_detailed(json_data, ".") assert os.path.exists("json_data_detail.json") with open(json_path) as json_data: diff --git a/scripts/available_software/tests/test_md.py b/scripts/available_software/tests/test_md.py index d4b757a3fddc..7d45f68ddb67 100644 --- a/scripts/available_software/tests/test_md.py +++ b/scripts/available_software/tests/test_md.py @@ -28,7 +28,7 @@ def teardown_class(cls): # --------------------------- def test_table_generate_simple(self): - simple_data = get_unique_software_names(modules_ugent()) + simple_data = get_unique_software_names(modules_ugent()[0]) table_data, col, row = generate_table_data(simple_data) assert col == 3 assert row == 5 @@ -36,7 +36,7 @@ def test_table_generate_simple(self): def test_md_simple(self): md_file = MdUtils(file_name='test_simple', title='Overview Modules') - simple_data = get_unique_software_names(modules_ugent()) + simple_data = get_unique_software_names(modules_ugent()[0]) generate_module_table(simple_data, md_file) md_file.create_md_file() assert os.path.exists("test_simple.md")