diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json index 0583b5ff77da..729cfeb547cd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json +++ b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json @@ -1 +1 @@ -{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "modules": {"ABAQUS": [1, 1, 1, 1, 1, 1, 1, 1], "ABINIT": [0, 1, 1, 1, 1, 1, 1, 1], "ABRA2": [0, 1, 1, 1, 1, 1, 1, 1], "ABRicate": [0, 1, 1, 0, 1, 1, 0, 1], "ABySS": [0, 1, 1, 0, 1, 1, 0, 1], "ACTC": [0, 1, 1, 1, 1, 1, 1, 1], "ADMIXTURE": [0, 1, 1, 0, 1, 1, 1, 1], "AMAPVox": [1, 1, 1, 0, 1, 1, 1, 1], "AMOS": [1, 1, 1, 0, 1, 1, 1, 1], "AMPtk": [1, 1, 1, 0, 1, 1, 1, 1], "ANTLR": [0, 1, 1, 0, 1, 1, 1, 1], "ANTs": [0, 1, 1, 0, 1, 1, 0, 1], "APR": [1, 1, 1, 0, 1, 1, 1, 1], "APR-util": [1, 1, 1, 0, 1, 1, 1, 1], "ARAGORN": [1, 1, 1, 0, 1, 1, 1, 1], "ASCAT": [1, 1, 1, 1, 1, 1, 1, 1], "ASE": [1, 1, 1, 1, 1, 1, 1, 1], "ATK": [1, 1, 1, 1, 1, 1, 1, 1], "AUGUSTUS": [1, 1, 1, 1, 1, 1, 1, 1], "AdapterRemoval": [1, 1, 1, 0, 1, 1, 1, 1], "Albumentations": [1, 1, 1, 0, 1, 1, 1, 1], "AlphaFold": [1, 1, 1, 1, 1, 1, 1, 1], "AlphaPulldown": [1, 1, 1, 1, 1, 1, 1, 1], "Altair-EDEM": [0, 1, 1, 0, 1, 0, 1, 0], "AmberMini": [0, 1, 1, 0, 1, 1, 1, 1], "AmberTools": [0, 1, 1, 0, 1, 1, 1, 1], "Anaconda3": [1, 1, 1, 1, 1, 1, 1, 1], "Annocript": [1, 1, 1, 1, 1, 1, 1, 1], "ArchR": [1, 1, 1, 0, 1, 1, 1, 1], "Archive-Zip": [1, 1, 1, 1, 1, 1, 1, 1], "Arlequin": [0, 1, 1, 0, 1, 1, 0, 1], "Armadillo": [1, 1, 1, 1, 1, 1, 1, 1], "Arrow": [1, 1, 1, 1, 1, 1, 1, 1], "ArviZ": [1, 1, 1, 0, 1, 1, 1, 1], "Aspera-CLI": [0, 1, 1, 0, 1, 0, 0, 0], "AutoDock-Vina": [1, 1, 1, 0, 1, 1, 1, 1], "AutoGeneS": [0, 1, 1, 1, 1, 1, 1, 1], "AutoMap": [0, 1, 1, 0, 1, 1, 0, 1], "Autoconf": [1, 1, 1, 1, 1, 1, 1, 1], "Automake": [1, 1, 1, 1, 1, 1, 1, 1], "Autotools": [1, 1, 1, 1, 1, 1, 1, 1], "Avogadro2": [1, 1, 1, 0, 1, 1, 1, 1], "BAMSurgeon": [0, 1, 1, 0, 1, 0, 0, 0], "BBMap": [1, 1, 1, 1, 1, 1, 1, 1], "BCFtools": [1, 1, 1, 1, 1, 1, 1, 1], "BDBag": [1, 1, 1, 0, 1, 1, 1, 1], "BEDOPS": [1, 1, 1, 1, 1, 1, 1, 1], "BEDTools": [1, 1, 1, 1, 1, 1, 1, 1], "BLAST+": [1, 1, 1, 1, 1, 1, 1, 1], "BLAT": [1, 1, 1, 1, 1, 1, 1, 1], "BLIS": [1, 1, 1, 1, 1, 1, 1, 1], "BRAKER": [1, 1, 1, 1, 1, 1, 1, 1], "BSMAPz": [0, 1, 1, 0, 1, 1, 0, 1], "BSseeker2": [0, 1, 0, 0, 0, 0, 0, 0], "BUSCO": [1, 1, 1, 1, 1, 1, 1, 1], "BWA": [1, 1, 1, 1, 1, 1, 1, 1], "BamTools": [1, 1, 1, 1, 1, 1, 1, 1], "Bambi": [1, 1, 1, 0, 1, 1, 1, 1], "Bandage": [1, 1, 1, 1, 1, 1, 1, 1], "BatMeth2": [0, 1, 1, 0, 1, 1, 0, 1], "BayeScEnv": [0, 1, 1, 0, 1, 0, 0, 0], "BayeScan": [0, 1, 1, 0, 1, 1, 1, 1], "BayesAss3-SNPs": [1, 1, 1, 0, 1, 1, 1, 1], "BayesPrism": [1, 1, 1, 1, 1, 1, 1, 1], "Bazel": [1, 1, 1, 1, 1, 1, 1, 1], "Beast": [1, 1, 1, 1, 1, 1, 1, 1], "BeautifulSoup": [1, 1, 1, 1, 1, 1, 1, 1], "BerkeleyGW": [0, 1, 1, 0, 1, 1, 0, 1], "BiG-SCAPE": [0, 1, 1, 0, 1, 1, 0, 1], "BigDFT": [1, 1, 1, 0, 1, 1, 1, 1], "BinSanity": [0, 1, 1, 0, 1, 1, 0, 1], "Bio-DB-HTS": [1, 1, 1, 0, 1, 1, 1, 1], "Bio-EUtilities": [0, 1, 1, 0, 1, 1, 0, 1], "Bio-SearchIO-hmmer": [0, 1, 1, 1, 1, 1, 1, 1], "BioPerl": [1, 1, 1, 1, 1, 1, 1, 1], "Biopython": [1, 1, 1, 1, 1, 1, 1, 1], "Bismark": [1, 1, 1, 0, 1, 1, 1, 1], "Bison": [1, 1, 1, 1, 1, 1, 1, 1], "Blender": [1, 1, 1, 1, 1, 1, 1, 1], "Block": [0, 1, 1, 1, 1, 1, 1, 1], "Blosc": [1, 1, 1, 1, 1, 1, 1, 1], "Blosc2": [1, 1, 1, 1, 1, 1, 1, 1], "Bonito": [0, 1, 0, 0, 1, 1, 0, 1], "Bonnie++": [0, 1, 0, 0, 0, 0, 0, 0], "Boost": [1, 1, 1, 1, 1, 1, 1, 1], "Boost.MPI": [1, 1, 1, 1, 1, 1, 1, 1], "Boost.Python": [1, 1, 1, 1, 1, 1, 1, 1], "Boost.Python-NumPy": [0, 0, 1, 0, 1, 0, 0, 0], "Bottleneck": [0, 1, 1, 0, 1, 1, 1, 1], "Bowtie": [1, 1, 1, 1, 1, 1, 1, 1], "Bowtie2": [1, 1, 1, 1, 1, 1, 1, 1], "Bracken": [1, 1, 1, 0, 1, 1, 1, 1], "Brotli": [1, 1, 1, 1, 1, 1, 1, 1], "Brotli-python": [1, 1, 1, 1, 1, 1, 1, 1], "Brunsli": [1, 1, 1, 1, 1, 1, 1, 1], "CASPR": [1, 1, 1, 1, 1, 1, 1, 1], "CCL": [1, 1, 1, 0, 1, 1, 1, 1], "CD-HIT": [1, 1, 1, 1, 1, 1, 1, 1], "CDAT": [0, 1, 1, 0, 1, 1, 1, 1], "CDBtools": [1, 1, 1, 0, 1, 1, 1, 1], "CDO": [1, 1, 1, 1, 1, 1, 1, 1], "CESM-deps": [1, 1, 1, 0, 1, 1, 1, 1], "CFDEMcoupling": [0, 1, 1, 0, 1, 1, 1, 1], "CFITSIO": [1, 1, 1, 1, 1, 1, 1, 1], "CGAL": [1, 1, 1, 1, 1, 1, 1, 1], "CGmapTools": [0, 1, 1, 0, 1, 1, 0, 1], "CIRCexplorer2": [0, 1, 1, 1, 1, 1, 1, 1], "CIRI-long": [0, 1, 1, 1, 1, 1, 1, 1], "CITE-seq-Count": [0, 1, 1, 0, 1, 1, 0, 1], "CLHEP": [1, 1, 1, 1, 1, 1, 1, 1], "CMAverse": [1, 1, 1, 0, 1, 1, 1, 1], "CMSeq": [1, 1, 1, 1, 1, 1, 1, 1], "CMake": [1, 1, 1, 1, 1, 1, 1, 1], "CONCOCT": [0, 1, 1, 1, 1, 1, 1, 1], "CP2K": [1, 1, 1, 1, 1, 1, 1, 1], "CPC2": [1, 1, 1, 1, 1, 1, 1, 1], "CPLEX": [1, 1, 1, 1, 1, 1, 1, 1], "CPPE": [0, 1, 1, 1, 1, 1, 1, 1], "CRISPR-DAV": [0, 1, 1, 1, 1, 0, 1, 0], "CRISPResso2": [0, 1, 1, 1, 1, 1, 1, 1], "CRYSTAL17": [0, 1, 1, 0, 1, 1, 0, 1], "CUDA": [1, 1, 1, 1, 1, 1, 1, 1], "CUDAcore": [1, 1, 1, 1, 1, 1, 1, 1], "CUnit": [1, 1, 1, 1, 1, 1, 1, 1], "CVXOPT": [1, 1, 1, 1, 1, 1, 1, 1], "Calib": [0, 1, 1, 0, 1, 0, 1, 0], "Cantera": [1, 1, 1, 0, 1, 1, 1, 1], "CapnProto": [1, 1, 1, 1, 1, 1, 1, 1], "Cartopy": [1, 1, 1, 1, 1, 1, 1, 1], "Casanovo": [1, 1, 1, 1, 1, 1, 1, 1], "CatLearn": [1, 1, 1, 1, 1, 1, 1, 1], "CatMAP": [1, 1, 1, 1, 1, 1, 1, 1], "CellOracle": [1, 1, 1, 1, 1, 1, 1, 1], "CellProfiler": [1, 1, 1, 0, 1, 1, 1, 1], "CellRanger": [0, 1, 1, 1, 1, 1, 1, 1], "CellRanger-ATAC": [1, 1, 1, 1, 1, 1, 1, 1], "CellRank": [0, 1, 1, 0, 1, 1, 1, 1], "CellTypist": [1, 1, 1, 0, 1, 1, 1, 1], "Cellpose": [1, 0, 1, 1, 1, 1, 1, 1], "Centrifuge": [0, 1, 1, 0, 1, 1, 1, 1], "Cereal": [1, 1, 1, 1, 1, 1, 1, 1], "CharLS": [1, 1, 1, 1, 1, 1, 1, 1], "CheMPS2": [0, 1, 1, 1, 1, 1, 1, 1], "Check": [1, 1, 1, 1, 1, 1, 1, 1], "CheckM": [1, 1, 1, 1, 1, 1, 1, 1], "Chimera": [1, 1, 1, 0, 1, 1, 1, 1], "Circuitscape": [1, 1, 1, 1, 1, 1, 1, 1], "Clang": [1, 1, 1, 1, 1, 1, 1, 1], "Clp": [1, 1, 1, 0, 1, 1, 1, 1], "Clustal-Omega": [1, 1, 1, 0, 1, 1, 1, 1], "ClustalW2": [0, 1, 1, 0, 1, 1, 1, 1], "CmdStanR": [1, 1, 1, 1, 1, 1, 1, 1], "CodAn": [1, 1, 1, 1, 1, 1, 1, 1], "CoinUtils": [1, 1, 1, 0, 1, 1, 1, 1], "ColabFold": [1, 0, 1, 0, 1, 0, 0, 0], "CompareM": [1, 1, 1, 0, 1, 1, 1, 1], "Compress-Raw-Zlib": [1, 1, 1, 1, 1, 1, 1, 1], "CoordgenLibs": [1, 1, 1, 1, 1, 1, 1, 1], "CopyKAT": [1, 1, 1, 1, 1, 1, 1, 1], "Coreutils": [0, 1, 1, 0, 1, 1, 0, 1], "CppUnit": [0, 1, 1, 0, 1, 1, 1, 1], "CuPy": [0, 0, 0, 0, 1, 0, 0, 0], "Cufflinks": [0, 1, 1, 1, 1, 1, 1, 1], "Cython": [1, 1, 1, 1, 1, 1, 1, 1], "DALI": [1, 1, 1, 1, 1, 1, 1, 1], "DAS_Tool": [1, 1, 1, 0, 1, 1, 1, 1], "DB": [1, 1, 1, 1, 1, 1, 1, 1], "DBD-mysql": [1, 1, 1, 1, 1, 1, 1, 1], "DBG2OLC": [1, 1, 1, 1, 1, 1, 1, 1], "DB_File": [1, 1, 1, 1, 1, 1, 1, 1], "DBus": [1, 1, 1, 1, 1, 1, 1, 1], "DFT-D3": [0, 1, 1, 1, 1, 1, 1, 1], "DIA-NN": [1, 1, 1, 0, 1, 1, 1, 1], "DIALOGUE": [1, 1, 1, 1, 1, 1, 1, 1], "DIAMOND": [1, 1, 1, 1, 1, 1, 1, 1], "DIANA": [0, 1, 1, 0, 1, 0, 1, 0], "DIRAC": [0, 1, 1, 0, 1, 1, 1, 1], "DL_POLY_Classic": [0, 1, 1, 0, 1, 1, 0, 1], "DMCfun": [0, 1, 1, 0, 1, 1, 0, 1], "DOLFIN": [0, 1, 1, 0, 1, 0, 1, 0], "DRAGMAP": [1, 1, 1, 0, 1, 1, 1, 1], "DROP": [0, 1, 1, 1, 1, 1, 1, 1], "DUBStepR": [1, 1, 1, 0, 1, 1, 1, 1], "Dakota": [1, 1, 1, 0, 1, 1, 1, 1], "Dalton": [0, 1, 1, 0, 1, 1, 1, 1], "Delly": [0, 1, 1, 1, 1, 1, 1, 1], "DendroPy": [1, 1, 1, 1, 1, 1, 1, 1], "DensPart": [1, 1, 1, 1, 1, 1, 1, 1], "Deprecated": [1, 1, 1, 1, 1, 1, 1, 1], "DiCE-ML": [1, 1, 1, 1, 1, 1, 1, 1], "Dice": [0, 1, 1, 1, 1, 1, 1, 1], "DoubletFinder": [1, 1, 1, 1, 1, 1, 1, 1], "Doxygen": [1, 1, 1, 1, 1, 1, 1, 1], "Dsuite": [0, 1, 1, 0, 1, 1, 1, 1], "DualSPHysics": [1, 0, 0, 0, 1, 0, 0, 0], "DyMat": [1, 1, 1, 0, 1, 1, 1, 1], "ELPA": [1, 1, 1, 1, 1, 1, 1, 1], "EMBOSS": [1, 1, 1, 0, 1, 1, 1, 1], "ESM-2": [1, 1, 1, 0, 1, 1, 1, 1], "ESMF": [1, 1, 1, 1, 1, 1, 1, 1], "ESMPy": [0, 1, 1, 0, 1, 1, 1, 1], "ETE": [1, 1, 1, 0, 1, 1, 1, 1], "EUKulele": [0, 1, 1, 0, 1, 1, 0, 1], "EasyBuild": [1, 1, 1, 1, 1, 1, 1, 1], "Eigen": [1, 1, 1, 1, 1, 1, 1, 1], "Elk": [0, 1, 1, 1, 1, 1, 1, 1], "EpiSCORE": [1, 1, 1, 1, 1, 1, 1, 1], "Excel-Writer-XLSX": [0, 1, 1, 1, 1, 1, 1, 1], "Exonerate": [1, 1, 1, 1, 1, 1, 1, 1], "FALCON": [0, 1, 1, 0, 1, 1, 0, 1], "FASTX-Toolkit": [1, 1, 1, 1, 1, 1, 1, 1], "FDS": [1, 1, 1, 1, 1, 1, 1, 1], "FEniCS": [0, 1, 1, 0, 1, 0, 1, 0], "FFC": [0, 1, 1, 0, 1, 1, 1, 1], "FFTW": [1, 1, 1, 1, 1, 1, 1, 1], "FFTW.MPI": [1, 1, 1, 1, 1, 1, 1, 1], "FFmpeg": [1, 1, 1, 1, 1, 1, 1, 1], "FIAT": [0, 1, 1, 0, 1, 1, 1, 1], "FIGARO": [0, 0, 1, 0, 1, 1, 1, 1], "FLAC": [1, 1, 1, 1, 1, 1, 1, 1], "FLAIR": [0, 1, 1, 0, 1, 0, 0, 0], "FLASH": [1, 1, 1, 1, 1, 1, 1, 1], "FLTK": [0, 1, 1, 1, 1, 1, 1, 1], "FLUENT": [1, 1, 1, 1, 1, 1, 1, 1], "FMM3D": [0, 1, 1, 1, 1, 1, 1, 1], "FMPy": [0, 1, 1, 0, 1, 1, 1, 1], "FSL": [1, 1, 1, 1, 1, 1, 1, 1], "FabIO": [0, 1, 1, 1, 1, 1, 1, 1], "Faiss": [1, 0, 0, 0, 1, 0, 0, 0], "FastANI": [1, 1, 1, 1, 1, 1, 1, 1], "FastME": [0, 1, 1, 1, 1, 1, 1, 1], "FastQC": [1, 1, 1, 1, 1, 1, 1, 1], "FastQ_Screen": [1, 1, 1, 1, 1, 1, 1, 1], "FastTree": [1, 1, 1, 1, 1, 1, 1, 1], "FastViromeExplorer": [0, 1, 1, 0, 1, 1, 0, 1], "Fiji": [1, 1, 1, 0, 1, 1, 1, 1], "Filtlong": [0, 1, 1, 1, 1, 1, 1, 1], "Fiona": [1, 1, 1, 1, 1, 1, 1, 1], "Flask": [1, 1, 1, 1, 1, 1, 1, 1], "FlexiBLAS": [1, 1, 1, 1, 1, 1, 1, 1], "Flye": [0, 1, 1, 0, 1, 1, 1, 1], "FragGeneScan": [1, 1, 1, 1, 1, 1, 1, 1], "FreeBarcodes": [1, 1, 1, 0, 1, 1, 1, 1], "FreeFEM": [0, 1, 1, 0, 1, 1, 1, 1], "FreeSurfer": [1, 1, 1, 0, 1, 1, 1, 1], "FreeXL": [1, 1, 1, 1, 1, 1, 1, 1], "FriBidi": [1, 1, 1, 1, 1, 1, 1, 1], "FuSeq": [0, 1, 1, 0, 1, 1, 0, 1], "FusionCatcher": [0, 1, 1, 0, 1, 1, 0, 1], "GAPPadder": [1, 1, 1, 1, 1, 1, 1, 1], "GATB-Core": [1, 1, 1, 1, 1, 1, 1, 1], "GATE": [1, 1, 1, 1, 1, 1, 1, 1], "GATK": [1, 1, 1, 1, 1, 1, 1, 1], "GBprocesS": [1, 1, 1, 1, 1, 1, 1, 1], "GCC": [1, 1, 1, 1, 1, 1, 1, 1], "GCCcore": [1, 1, 1, 1, 1, 1, 1, 1], "GConf": [1, 1, 1, 1, 1, 1, 1, 1], "GDAL": [1, 1, 1, 1, 1, 1, 1, 1], "GDB": [0, 1, 1, 0, 1, 1, 1, 1], "GDCM": [1, 1, 1, 1, 1, 1, 1, 1], "GDGraph": [1, 1, 1, 1, 1, 1, 1, 1], "GDRCopy": [1, 1, 1, 1, 1, 1, 1, 1], "GEGL": [0, 1, 1, 0, 1, 1, 1, 1], "GEOS": [1, 1, 1, 1, 1, 1, 1, 1], "GIMP": [0, 1, 1, 0, 1, 0, 1, 0], "GL2PS": [1, 1, 1, 1, 1, 1, 1, 1], "GLFW": [1, 1, 1, 1, 1, 1, 1, 1], "GLIMPSE": [1, 1, 1, 1, 1, 1, 1, 1], "GLM": [1, 1, 1, 1, 1, 1, 1, 1], "GLPK": [1, 1, 1, 1, 1, 1, 1, 1], "GLib": [1, 1, 1, 1, 1, 1, 1, 1], "GLibmm": [0, 1, 1, 0, 1, 1, 1, 1], "GMAP-GSNAP": [1, 1, 1, 1, 1, 1, 1, 1], "GMP": [1, 1, 1, 1, 1, 1, 1, 1], "GOATOOLS": [1, 1, 1, 1, 1, 1, 1, 1], "GObject-Introspection": [1, 1, 1, 1, 1, 1, 1, 1], "GPAW": [1, 1, 1, 1, 1, 1, 1, 1], "GPAW-setups": [1, 1, 1, 1, 1, 1, 1, 1], "GPy": [1, 1, 1, 0, 1, 1, 1, 1], "GPyOpt": [0, 1, 1, 0, 1, 1, 1, 1], "GPyTorch": [1, 1, 1, 1, 1, 1, 1, 1], "GRASS": [1, 1, 1, 1, 1, 1, 1, 1], "GROMACS": [1, 1, 1, 1, 1, 1, 1, 1], "GSL": [1, 1, 1, 1, 1, 1, 1, 1], "GST-plugins-bad": [1, 1, 1, 1, 1, 1, 1, 1], "GST-plugins-base": [1, 1, 1, 1, 1, 1, 1, 1], "GStreamer": [1, 1, 1, 1, 1, 1, 1, 1], "GTDB-Tk": [1, 1, 1, 0, 1, 1, 1, 1], "GTK+": [0, 1, 1, 1, 1, 1, 1, 1], "GTK2": [1, 1, 1, 1, 1, 1, 1, 1], "GTK3": [1, 1, 1, 1, 1, 1, 1, 1], "GTK4": [1, 1, 1, 1, 1, 1, 1, 1], "GTS": [1, 1, 1, 1, 1, 1, 1, 1], "GUSHR": [1, 1, 1, 1, 1, 1, 1, 1], "GapFiller": [1, 1, 1, 1, 1, 1, 1, 1], "Gaussian": [1, 1, 1, 1, 1, 1, 1, 1], "Gblocks": [1, 1, 1, 0, 1, 1, 1, 1], "Gdk-Pixbuf": [1, 1, 1, 1, 1, 1, 1, 1], "Geant4": [1, 1, 1, 1, 1, 1, 1, 1], "GeneMark-ET": [1, 1, 1, 1, 1, 1, 1, 1], "GenomeThreader": [1, 1, 1, 1, 1, 1, 1, 1], "GenomeWorks": [0, 0, 0, 0, 1, 0, 0, 0], "GetOrganelle": [1, 1, 1, 1, 1, 1, 1, 1], "GffCompare": [1, 1, 1, 1, 1, 1, 1, 1], "Ghostscript": [1, 1, 1, 1, 1, 1, 1, 1], "GimmeMotifs": [1, 1, 1, 1, 1, 1, 1, 1], "Giotto-Suite": [1, 1, 1, 1, 1, 1, 1, 1], "GitPython": [1, 1, 1, 1, 1, 1, 1, 1], "GlimmerHMM": [0, 1, 1, 1, 1, 1, 1, 1], "GlobalArrays": [0, 1, 1, 0, 1, 1, 1, 1], "GnuTLS": [1, 1, 1, 1, 1, 1, 1, 1], "Go": [1, 1, 1, 0, 1, 1, 1, 1], "GraphMap": [0, 0, 1, 0, 1, 1, 0, 1], "GraphMap2": [0, 1, 1, 0, 1, 1, 0, 1], "Graphene": [1, 1, 1, 1, 1, 1, 1, 1], "GraphicsMagick": [0, 1, 1, 0, 1, 1, 0, 1], "Graphviz": [1, 1, 1, 1, 1, 1, 1, 1], "Greenlet": [1, 1, 1, 1, 1, 1, 1, 1], "GroIMP": [0, 1, 1, 0, 1, 1, 1, 1], "Guile": [1, 1, 1, 1, 1, 1, 1, 1], "Guppy": [1, 1, 1, 1, 1, 1, 1, 1], "Gurobi": [1, 1, 1, 1, 1, 1, 1, 1], "HAL": [0, 1, 1, 1, 1, 1, 1, 1], "HDDM": [0, 1, 0, 0, 0, 1, 0, 1], "HDF": [1, 1, 1, 1, 1, 1, 1, 1], "HDF5": [1, 1, 1, 1, 1, 1, 1, 1], "HH-suite": [1, 1, 1, 1, 1, 1, 1, 1], "HISAT2": [1, 1, 1, 1, 1, 1, 1, 1], "HMMER": [1, 1, 1, 1, 1, 1, 1, 1], "HMMER2": [0, 1, 1, 1, 1, 1, 1, 1], "HPL": [1, 1, 1, 0, 1, 1, 1, 1], "HTSeq": [1, 1, 1, 1, 1, 1, 1, 1], "HTSlib": [1, 1, 1, 1, 1, 1, 1, 1], "HTSplotter": [1, 1, 1, 1, 1, 1, 1, 1], "Hadoop": [0, 1, 1, 0, 1, 1, 1, 1], "HarfBuzz": [1, 1, 1, 1, 1, 1, 1, 1], "HiCExplorer": [1, 1, 1, 1, 1, 1, 1, 1], "HiCMatrix": [1, 1, 1, 1, 1, 1, 1, 1], "Highway": [1, 1, 1, 1, 1, 1, 1, 1], "Horovod": [1, 0, 0, 0, 1, 0, 0, 0], "HyPo": [0, 1, 1, 0, 1, 0, 0, 0], "Hybpiper": [1, 1, 1, 1, 1, 1, 1, 1], "Hydra": [1, 1, 1, 0, 1, 1, 1, 1], "Hyperopt": [1, 1, 1, 1, 1, 1, 1, 1], "Hypre": [1, 1, 1, 1, 1, 1, 1, 1], "ICU": [1, 1, 1, 1, 1, 1, 1, 1], "IDBA-UD": [1, 1, 1, 1, 1, 1, 1, 1], "IGMPlot": [0, 1, 0, 0, 0, 0, 0, 0], "IGV": [0, 1, 1, 0, 1, 1, 1, 1], "IOR": [0, 1, 1, 0, 1, 1, 0, 1], "IPython": [1, 1, 1, 1, 1, 1, 1, 1], "IQ-TREE": [1, 1, 1, 1, 1, 1, 1, 1], "IRkernel": [0, 1, 1, 0, 1, 1, 1, 1], "ISA-L": [1, 1, 1, 1, 1, 1, 1, 1], "ITK": [1, 1, 1, 1, 1, 1, 1, 1], "ImageMagick": [1, 1, 1, 1, 1, 1, 1, 1], "Imath": [1, 1, 1, 1, 1, 1, 1, 1], "Inferelator": [1, 1, 1, 1, 1, 1, 1, 1], "Infernal": [1, 1, 1, 0, 1, 1, 1, 1], "InterProScan": [1, 1, 1, 1, 1, 1, 1, 1], "IsoQuant": [1, 1, 1, 1, 1, 1, 1, 1], "IsoSeq": [1, 1, 1, 1, 1, 1, 1, 1], "JAGS": [1, 1, 1, 1, 1, 1, 1, 1], "JSON-GLib": [0, 1, 1, 0, 1, 1, 1, 1], "Jansson": [1, 1, 1, 1, 1, 1, 1, 1], "JasPer": [1, 1, 1, 1, 1, 1, 1, 1], "Java": [1, 1, 1, 1, 1, 1, 1, 1], "Jellyfish": [1, 1, 1, 1, 1, 1, 1, 1], "JsonCpp": [1, 1, 1, 1, 1, 1, 1, 1], "Judy": [1, 1, 1, 1, 1, 1, 1, 1], "Julia": [1, 1, 1, 1, 1, 1, 1, 1], "JupyterLab": [1, 1, 1, 1, 1, 1, 1, 1], "KMC": [1, 1, 1, 1, 1, 1, 1, 1], "KaHIP": [0, 0, 0, 1, 0, 0, 0, 0], "Kaleido": [0, 1, 1, 1, 1, 1, 1, 1], "Kalign": [1, 1, 1, 1, 1, 1, 1, 1], "Kent_tools": [1, 1, 1, 1, 1, 1, 1, 1], "Keras": [1, 1, 1, 1, 1, 1, 1, 1], "KerasTuner": [1, 1, 1, 1, 1, 1, 1, 1], "Kraken": [0, 1, 1, 1, 1, 1, 1, 1], "Kraken2": [0, 1, 1, 0, 1, 1, 1, 1], "KrakenUniq": [1, 1, 1, 1, 1, 1, 1, 1], "KronaTools": [1, 1, 1, 1, 1, 1, 1, 1], "LAME": [1, 1, 1, 1, 1, 1, 1, 1], "LAMMPS": [1, 1, 1, 0, 1, 1, 1, 1], "LAST": [0, 1, 1, 1, 1, 1, 1, 1], "LASTZ": [0, 1, 1, 0, 1, 1, 0, 1], "LDC": [1, 1, 1, 1, 1, 1, 1, 1], "LERC": [1, 1, 1, 1, 1, 1, 1, 1], "LIBSVM": [1, 1, 1, 1, 1, 1, 1, 1], "LLVM": [1, 1, 1, 1, 1, 1, 1, 1], "LMDB": [1, 1, 1, 1, 1, 1, 1, 1], "LMfit": [0, 1, 1, 0, 1, 1, 0, 1], "LPJmL": [0, 1, 1, 1, 1, 1, 1, 1], "LPeg": [0, 1, 1, 0, 1, 1, 1, 1], "LSD2": [1, 1, 1, 1, 1, 1, 1, 1], "LUMPY": [0, 1, 1, 1, 1, 1, 1, 1], "LZO": [1, 1, 1, 1, 1, 1, 1, 1], "L_RNA_scaffolder": [1, 1, 1, 1, 1, 1, 1, 1], "Lace": [1, 1, 1, 1, 1, 1, 1, 1], "LiBis": [0, 1, 1, 0, 1, 1, 0, 1], "LibLZF": [1, 1, 1, 1, 1, 1, 1, 1], "LibSoup": [1, 1, 1, 1, 1, 1, 1, 1], "LibTIFF": [1, 1, 1, 1, 1, 1, 1, 1], "Libint": [1, 1, 1, 1, 1, 1, 1, 1], "Lighter": [1, 1, 1, 0, 1, 1, 1, 1], "LittleCMS": [1, 1, 1, 1, 1, 1, 1, 1], "LncLOOM": [0, 1, 1, 1, 1, 1, 1, 1], "LoRDEC": [1, 1, 1, 1, 1, 1, 1, 1], "Longshot": [0, 1, 1, 0, 1, 0, 0, 0], "LtrDetector": [0, 1, 1, 0, 1, 1, 0, 1], "Lua": [1, 1, 1, 1, 1, 1, 1, 1], "M1QN3": [0, 1, 1, 0, 1, 0, 1, 0], "M4": [1, 1, 1, 1, 1, 1, 1, 1], "MACS2": [1, 1, 1, 0, 1, 1, 1, 1], "MAFFT": [1, 1, 1, 1, 1, 1, 1, 1], "MAGeCK": [1, 1, 1, 1, 1, 1, 1, 1], "MARS": [0, 1, 1, 0, 1, 1, 0, 1], "MATIO": [0, 1, 1, 0, 1, 1, 1, 1], "MATLAB": [1, 1, 1, 1, 1, 1, 1, 1], "MBROLA": [0, 1, 1, 0, 1, 1, 1, 1], "MCL": [0, 1, 1, 1, 1, 1, 1, 1], "MDAnalysis": [1, 1, 1, 1, 1, 1, 1, 1], "MDTraj": [1, 1, 1, 1, 1, 1, 1, 1], "MEGA": [0, 1, 1, 0, 1, 0, 1, 0], "MEGAHIT": [1, 1, 1, 1, 1, 1, 1, 1], "MEM": [0, 1, 1, 0, 1, 0, 0, 0], "MEME": [1, 1, 1, 0, 1, 1, 1, 1], "MESS": [0, 1, 1, 0, 1, 1, 0, 1], "METIS": [1, 1, 1, 1, 1, 1, 1, 1], "MIGRATE-N": [1, 1, 1, 0, 1, 1, 1, 1], "MMseqs2": [1, 1, 1, 1, 1, 1, 1, 1], "MOABS": [0, 1, 1, 0, 1, 1, 0, 1], "MONAI": [1, 1, 1, 1, 1, 1, 1, 1], "MOOSE": [1, 1, 1, 0, 1, 1, 1, 1], "MPC": [1, 1, 1, 1, 1, 1, 1, 1], "MPFR": [1, 1, 1, 1, 1, 1, 1, 1], "MRtrix": [1, 1, 1, 1, 1, 1, 1, 1], "MUMPS": [1, 1, 1, 1, 1, 1, 1, 1], "MUMmer": [1, 1, 1, 1, 1, 1, 1, 1], "MUSCLE": [1, 1, 1, 1, 1, 1, 1, 1], "MXNet": [1, 1, 1, 1, 1, 1, 1, 1], "MaSuRCA": [1, 1, 1, 1, 1, 1, 1, 1], "Mako": [1, 1, 1, 1, 1, 1, 1, 1], "MariaDB": [1, 1, 1, 1, 1, 1, 1, 1], "MariaDB-connector-c": [0, 1, 1, 0, 1, 1, 1, 1], "Mash": [1, 1, 1, 1, 1, 1, 1, 1], "Maven": [1, 1, 1, 1, 1, 1, 1, 1], "MaxBin": [1, 1, 1, 1, 1, 1, 1, 1], "MedPy": [1, 1, 1, 1, 1, 1, 1, 1], "Megalodon": [1, 1, 1, 1, 1, 1, 1, 1], "Mercurial": [1, 1, 1, 0, 1, 1, 1, 1], "Mesa": [1, 1, 1, 1, 1, 1, 1, 1], "Meson": [1, 1, 1, 1, 1, 1, 1, 1], "Mesquite": [0, 1, 1, 0, 1, 1, 0, 1], "MetaBAT": [1, 1, 1, 1, 1, 1, 1, 1], "MetaEuk": [1, 1, 1, 1, 1, 1, 1, 1], "MetaPhlAn": [1, 1, 1, 1, 1, 1, 1, 1], "Metagenome-Atlas": [0, 1, 1, 0, 1, 1, 1, 1], "MethylDackel": [0, 1, 1, 0, 1, 0, 0, 0], "MiXCR": [0, 1, 1, 0, 1, 0, 1, 0], "MicrobeAnnotator": [0, 1, 1, 0, 1, 1, 1, 1], "MinCED": [0, 1, 1, 0, 1, 1, 0, 1], "MinPath": [1, 1, 1, 0, 1, 1, 1, 1], "Miniconda3": [1, 1, 1, 1, 1, 1, 1, 1], "Minipolish": [1, 1, 1, 0, 1, 1, 1, 1], "ModelTest-NG": [1, 1, 1, 0, 1, 1, 1, 1], "Molden": [0, 1, 1, 0, 1, 1, 1, 1], "Molekel": [1, 1, 1, 0, 1, 1, 1, 1], "Mono": [0, 1, 0, 0, 0, 1, 0, 1], "Monocle3": [1, 1, 1, 1, 1, 1, 1, 1], "MrBayes": [0, 1, 1, 1, 1, 1, 1, 1], "MuJoCo": [1, 1, 1, 1, 1, 1, 1, 1], "MultiQC": [1, 1, 1, 1, 1, 1, 1, 1], "MultilevelEstimators": [1, 1, 1, 0, 1, 1, 1, 1], "Multiwfn": [0, 1, 1, 0, 1, 1, 0, 1], "MyCC": [0, 1, 1, 0, 1, 1, 0, 1], "Myokit": [0, 1, 1, 1, 1, 1, 1, 1], "NAMD": [1, 0, 0, 0, 1, 0, 0, 0], "NASM": [1, 1, 1, 1, 1, 1, 1, 1], "NCCL": [1, 0, 1, 0, 1, 1, 0, 1], "NCL": [0, 0, 1, 0, 1, 1, 0, 1], "NCO": [0, 1, 1, 0, 1, 1, 1, 1], "NECI": [0, 1, 1, 1, 1, 1, 1, 1], "NEURON": [1, 1, 1, 0, 1, 1, 1, 1], "NGS": [1, 1, 1, 1, 1, 1, 1, 1], "NGSpeciesID": [1, 1, 1, 0, 1, 1, 1, 1], "NLMpy": [0, 1, 0, 0, 0, 1, 0, 1], "NLopt": [1, 1, 1, 1, 1, 1, 1, 1], "NOVOPlasty": [0, 1, 0, 0, 0, 1, 0, 1], "NSPR": [1, 1, 1, 1, 1, 1, 1, 1], "NSS": [1, 1, 1, 1, 1, 1, 1, 1], "NVHPC": [1, 0, 1, 0, 1, 0, 0, 0], "NanoComp": [0, 1, 1, 0, 1, 1, 1, 1], "NanoFilt": [0, 1, 1, 0, 1, 1, 0, 1], "NanoPlot": [0, 1, 1, 0, 1, 1, 1, 1], "NanoStat": [1, 1, 1, 1, 1, 1, 1, 1], "NanopolishComp": [0, 1, 1, 0, 1, 1, 1, 1], "NetPyNE": [1, 1, 1, 0, 1, 1, 1, 1], "NewHybrids": [0, 1, 1, 0, 1, 0, 1, 0], "NextGenMap": [1, 1, 1, 0, 1, 1, 1, 1], "Nextflow": [1, 1, 1, 1, 1, 1, 1, 1], "NiBabel": [1, 1, 1, 1, 1, 1, 1, 1], "Nim": [1, 1, 1, 0, 1, 1, 1, 1], "Ninja": [1, 1, 1, 1, 1, 1, 1, 1], "Nipype": [1, 1, 1, 0, 1, 1, 1, 1], "OPERA-MS": [0, 1, 1, 0, 1, 1, 1, 1], "ORCA": [1, 1, 1, 1, 1, 1, 1, 1], "OSU-Micro-Benchmarks": [1, 1, 1, 1, 1, 1, 1, 1], "Omnipose": [1, 1, 1, 1, 1, 1, 1, 1], "OpenAI-Gym": [0, 1, 1, 0, 1, 1, 0, 1], "OpenBLAS": [1, 1, 1, 1, 1, 1, 1, 1], "OpenBabel": [1, 1, 1, 1, 1, 1, 1, 1], "OpenCV": [1, 1, 1, 1, 1, 1, 1, 1], "OpenCoarrays": [0, 1, 1, 0, 1, 1, 0, 1], "OpenEXR": [1, 1, 1, 1, 1, 1, 1, 1], "OpenFOAM": [1, 1, 1, 1, 1, 1, 1, 1], "OpenFOAM-Extend": [0, 1, 1, 0, 1, 1, 0, 1], "OpenFace": [0, 1, 1, 0, 1, 1, 1, 1], "OpenFold": [1, 0, 0, 0, 1, 0, 0, 0], "OpenForceField": [0, 1, 1, 0, 1, 1, 1, 1], "OpenImageIO": [0, 1, 1, 0, 1, 1, 0, 1], "OpenJPEG": [1, 1, 1, 1, 1, 1, 1, 1], "OpenMM": [1, 1, 1, 1, 1, 1, 1, 1], "OpenMM-PLUMED": [0, 1, 1, 0, 1, 1, 1, 1], "OpenMMTools": [0, 1, 1, 0, 1, 1, 1, 1], "OpenMPI": [1, 1, 1, 1, 1, 1, 1, 1], "OpenMolcas": [0, 1, 1, 0, 1, 1, 1, 1], "OpenPGM": [1, 1, 1, 1, 1, 1, 1, 1], "OpenPIV": [0, 1, 1, 0, 1, 1, 0, 1], "OpenSSL": [1, 1, 1, 1, 1, 1, 1, 1], "OpenSees": [0, 1, 1, 0, 1, 1, 1, 1], "OpenSlide": [1, 1, 1, 0, 1, 1, 1, 1], "Optuna": [1, 1, 1, 1, 1, 1, 1, 1], "OrthoFinder": [0, 1, 1, 1, 1, 1, 1, 1], "Osi": [1, 1, 1, 0, 1, 1, 1, 1], "PBGZIP": [1, 1, 1, 0, 1, 1, 1, 1], "PCRE": [1, 1, 1, 1, 1, 1, 1, 1], "PCRE2": [1, 1, 1, 1, 1, 1, 1, 1], "PEAR": [1, 1, 1, 1, 1, 1, 1, 1], "PETSc": [1, 1, 1, 1, 1, 1, 1, 1], "PICRUSt2": [1, 1, 1, 1, 1, 1, 1, 1], "PLAMS": [1, 1, 1, 1, 1, 1, 1, 1], "PLINK": [1, 1, 1, 0, 1, 1, 1, 1], "PLUMED": [1, 1, 1, 1, 1, 1, 1, 1], "PLY": [0, 1, 1, 0, 1, 1, 1, 1], "PMIx": [1, 1, 1, 1, 1, 1, 1, 1], "POT": [1, 1, 1, 1, 1, 1, 1, 1], "POV-Ray": [0, 1, 1, 1, 1, 1, 1, 1], "PPanGGOLiN": [1, 1, 1, 0, 1, 1, 1, 1], "PRANK": [0, 1, 1, 1, 1, 1, 1, 1], "PRINSEQ": [1, 1, 1, 1, 1, 1, 1, 1], "PRISMS-PF": [0, 1, 1, 0, 1, 1, 1, 1], "PROJ": [1, 1, 1, 1, 1, 1, 1, 1], "Pandoc": [0, 1, 1, 1, 1, 1, 1, 1], "Pango": [1, 1, 1, 1, 1, 1, 1, 1], "ParMETIS": [1, 1, 1, 0, 1, 1, 1, 1], "ParMGridGen": [0, 1, 1, 0, 1, 1, 0, 1], "ParaView": [1, 1, 1, 1, 1, 1, 1, 1], "ParmEd": [0, 1, 1, 0, 1, 1, 1, 1], "PartitionFinder": [0, 1, 0, 0, 0, 1, 0, 1], "Perl": [1, 1, 1, 1, 1, 1, 1, 1], "Perl-bundle-CPAN": [1, 1, 1, 1, 1, 1, 1, 1], "Phenoflow": [1, 1, 1, 1, 1, 1, 1, 1], "PhyloPhlAn": [1, 1, 1, 1, 1, 1, 1, 1], "Pillow": [1, 1, 1, 1, 1, 1, 1, 1], "Pillow-SIMD": [1, 1, 1, 1, 1, 1, 1, 1], "Pilon": [1, 1, 1, 0, 1, 1, 1, 1], "PnetCDF": [1, 1, 1, 0, 1, 1, 1, 1], "Porechop": [0, 1, 1, 0, 1, 1, 0, 1], "PostgreSQL": [1, 1, 1, 1, 1, 1, 1, 1], "Primer3": [0, 1, 1, 0, 1, 0, 1, 0], "ProtHint": [1, 1, 1, 1, 1, 1, 1, 1], "PsiCLASS": [1, 1, 1, 1, 1, 1, 1, 1], "PyBerny": [0, 1, 1, 1, 1, 1, 1, 1], "PyCairo": [1, 1, 1, 1, 1, 1, 1, 1], "PyCalib": [1, 1, 1, 1, 1, 1, 1, 1], "PyCheMPS2": [0, 1, 1, 1, 1, 1, 1, 1], "PyFoam": [0, 1, 1, 1, 1, 1, 1, 1], "PyGEOS": [0, 1, 1, 0, 1, 1, 1, 1], "PyGObject": [1, 1, 1, 1, 1, 1, 1, 1], "PyKeOps": [1, 0, 0, 0, 1, 0, 0, 0], "PyMC3": [1, 1, 1, 0, 1, 1, 1, 1], "PyMOL": [1, 1, 1, 1, 1, 1, 1, 1], "PyOD": [0, 1, 1, 1, 1, 1, 1, 1], "PyOpenCL": [1, 1, 1, 1, 1, 1, 1, 1], "PyOpenGL": [1, 1, 1, 1, 1, 1, 1, 1], "PyQt5": [1, 1, 1, 1, 1, 1, 1, 1], "PyQtGraph": [1, 1, 1, 1, 1, 1, 1, 1], "PyRETIS": [0, 1, 1, 1, 1, 1, 1, 1], "PyRe": [0, 1, 0, 0, 0, 1, 0, 1], "PySCF": [1, 1, 1, 1, 1, 1, 1, 1], "PyStan": [0, 1, 1, 0, 1, 1, 1, 1], "PyTables": [1, 1, 1, 1, 1, 1, 1, 1], "PyTorch": [1, 1, 1, 1, 1, 1, 1, 1], "PyTorch-Geometric": [0, 1, 1, 0, 1, 1, 1, 1], "PyTorch-Lightning": [1, 1, 1, 1, 1, 1, 1, 1], "PyVCF": [0, 1, 1, 0, 1, 0, 0, 0], "PyVCF3": [1, 1, 1, 1, 1, 1, 1, 1], "PyWBGT": [1, 1, 1, 1, 1, 1, 1, 1], "PyWavelets": [0, 1, 1, 0, 1, 1, 0, 1], "PyYAML": [1, 1, 1, 1, 1, 1, 1, 1], "Pychopper": [0, 0, 1, 0, 1, 1, 0, 1], "Pyomo": [1, 1, 1, 0, 1, 1, 1, 1], "Pysam": [1, 1, 1, 1, 1, 1, 1, 1], "Python": [1, 1, 1, 1, 1, 1, 1, 1], "Python-bundle-PyPI": [1, 1, 1, 1, 1, 1, 1, 1], "QCA": [1, 1, 1, 1, 1, 1, 1, 1], "QD": [1, 0, 1, 0, 1, 0, 0, 0], "QGIS": [1, 1, 1, 1, 1, 1, 1, 1], "QIIME2": [1, 1, 1, 1, 1, 1, 1, 1], "QScintilla": [1, 1, 1, 1, 1, 1, 1, 1], "QUAST": [1, 1, 1, 1, 1, 1, 1, 1], "Qhull": [1, 1, 1, 1, 1, 1, 1, 1], "Qt5": [1, 1, 1, 1, 1, 1, 1, 1], "Qt5Webkit": [1, 1, 1, 1, 1, 1, 1, 1], "QtKeychain": [1, 1, 1, 1, 1, 1, 1, 1], "QtPy": [1, 1, 1, 1, 1, 1, 1, 1], "Qtconsole": [1, 1, 1, 1, 1, 1, 1, 1], "Qualimap": [0, 1, 1, 1, 1, 1, 1, 1], "QuantumESPRESSO": [1, 1, 1, 0, 1, 1, 1, 1], "QuickFF": [1, 1, 1, 1, 1, 1, 1, 1], "Qwt": [1, 1, 1, 1, 1, 1, 1, 1], "R": [1, 1, 1, 1, 1, 1, 1, 1], "R-INLA": [0, 1, 1, 1, 1, 1, 1, 1], "R-bundle-Bioconductor": [1, 1, 1, 1, 1, 1, 1, 1], "R2jags": [1, 1, 1, 1, 1, 1, 1, 1], "RASPA2": [0, 1, 1, 1, 1, 1, 1, 1], "RAxML": [1, 1, 1, 0, 1, 1, 1, 1], "RAxML-NG": [0, 1, 1, 0, 1, 1, 1, 1], "RDFlib": [1, 1, 1, 0, 1, 1, 1, 1], "RDKit": [1, 1, 1, 1, 1, 1, 1, 1], "RDP-Classifier": [1, 1, 1, 0, 1, 1, 1, 1], "RE2": [1, 1, 1, 1, 1, 1, 1, 1], "RLCard": [1, 1, 1, 0, 1, 1, 1, 1], "RMBlast": [1, 1, 1, 1, 1, 1, 1, 1], "RNA-Bloom": [0, 1, 1, 0, 1, 0, 0, 0], "ROOT": [1, 1, 1, 1, 1, 1, 1, 1], "RSEM": [1, 1, 1, 1, 1, 1, 1, 1], "RSeQC": [1, 1, 1, 0, 1, 1, 1, 1], "RStudio-Server": [1, 1, 1, 1, 1, 1, 1, 1], "Racon": [1, 1, 1, 1, 1, 1, 1, 1], "RagTag": [0, 1, 1, 1, 1, 1, 1, 1], "Ragout": [0, 1, 1, 1, 1, 1, 1, 1], "RapidJSON": [1, 1, 1, 1, 1, 1, 1, 1], "Raven": [1, 1, 1, 1, 1, 1, 1, 1], "Ray": [0, 1, 0, 0, 0, 0, 0, 0], "Ray-project": [1, 1, 1, 0, 1, 1, 1, 1], "ReFrame": [1, 1, 1, 1, 1, 1, 1, 1], "Redis": [1, 1, 1, 1, 1, 1, 1, 1], "RegTools": [1, 1, 1, 1, 1, 1, 1, 1], "RepeatMasker": [1, 1, 1, 1, 1, 1, 1, 1], "ResistanceGA": [1, 1, 1, 0, 1, 1, 1, 1], "RevBayes": [1, 1, 1, 1, 1, 1, 1, 1], "Rgurobi": [1, 1, 1, 0, 1, 1, 1, 1], "RheoTool": [1, 1, 1, 0, 1, 1, 1, 1], "Rmath": [0, 1, 1, 1, 1, 1, 1, 1], "RnBeads": [0, 1, 1, 0, 1, 1, 1, 1], "Roary": [0, 1, 1, 0, 1, 1, 1, 1], "Ruby": [1, 1, 1, 1, 1, 1, 1, 1], "Rust": [1, 1, 1, 1, 1, 1, 1, 1], "SAMtools": [1, 1, 1, 1, 1, 1, 1, 1], "SBCL": [1, 1, 1, 0, 1, 1, 1, 1], "SCENIC": [0, 1, 1, 0, 1, 1, 1, 1], "SCGid": [1, 1, 1, 0, 1, 1, 1, 1], "SCOTCH": [1, 1, 1, 1, 1, 1, 1, 1], "SCons": [1, 1, 1, 0, 1, 1, 1, 1], "SCopeLoomR": [1, 1, 1, 1, 1, 1, 1, 1], "SDL2": [1, 1, 1, 1, 1, 1, 1, 1], "SDSL": [0, 1, 1, 0, 1, 1, 0, 1], "SECAPR": [0, 1, 1, 0, 1, 1, 0, 1], "SELFIES": [1, 1, 1, 0, 1, 1, 1, 1], "SEPP": [1, 1, 1, 1, 1, 1, 1, 1], "SHAP": [1, 1, 1, 1, 1, 1, 1, 1], "SISSO": [1, 1, 1, 0, 1, 1, 1, 1], "SISSO++": [1, 1, 1, 0, 1, 1, 1, 1], "SKESA": [1, 1, 1, 0, 1, 1, 1, 1], "SLATEC": [0, 1, 1, 0, 1, 1, 0, 1], "SLEPc": [1, 1, 1, 1, 1, 1, 1, 1], "SLiM": [0, 1, 1, 0, 1, 0, 1, 0], "SMAP": [1, 1, 1, 1, 1, 1, 1, 1], "SMC++": [1, 1, 1, 0, 1, 1, 1, 1], "SMV": [0, 1, 1, 0, 1, 1, 1, 1], "SNAP": [1, 1, 1, 1, 1, 1, 1, 1], "SPAdes": [1, 1, 1, 1, 1, 1, 1, 1], "SPM": [1, 1, 1, 0, 1, 1, 1, 1], "SPOTPY": [1, 1, 1, 0, 1, 1, 1, 1], "SQLite": [1, 1, 1, 1, 1, 1, 1, 1], "SRA-Toolkit": [1, 1, 1, 1, 1, 1, 1, 1], "SRPRISM": [0, 1, 1, 1, 1, 1, 1, 1], "SRST2": [0, 1, 1, 1, 1, 1, 1, 1], "SSPACE_Basic": [0, 1, 1, 0, 1, 0, 1, 0], "SSW": [0, 1, 1, 0, 1, 1, 1, 1], "STACEY": [0, 1, 1, 0, 1, 0, 1, 0], "STAR": [1, 1, 1, 1, 1, 1, 1, 1], "STREAM": [0, 1, 1, 0, 1, 1, 1, 1], "STRique": [1, 1, 1, 0, 1, 1, 1, 1], "SUNDIALS": [1, 1, 1, 1, 1, 1, 1, 1], "SVIM": [1, 1, 1, 1, 1, 1, 1, 1], "SWIG": [1, 1, 1, 1, 1, 1, 1, 1], "Sabre": [1, 1, 1, 1, 1, 1, 1, 1], "Sailfish": [0, 1, 0, 0, 0, 1, 0, 1], "Salmon": [1, 1, 1, 1, 1, 1, 1, 1], "Sambamba": [0, 1, 1, 1, 1, 1, 1, 1], "Satsuma2": [1, 1, 1, 0, 1, 1, 1, 1], "ScaFaCoS": [1, 1, 1, 0, 1, 1, 1, 1], "ScaLAPACK": [1, 1, 1, 1, 1, 1, 1, 1], "SciPy-bundle": [1, 1, 1, 1, 1, 1, 1, 1], "Seaborn": [1, 1, 1, 1, 1, 1, 1, 1], "SentencePiece": [1, 1, 1, 1, 1, 1, 1, 1], "SeqAn": [1, 1, 1, 1, 1, 1, 1, 1], "SeqKit": [0, 1, 1, 0, 1, 1, 1, 1], "SeqLib": [0, 1, 1, 0, 1, 0, 1, 0], "Serf": [1, 1, 1, 0, 1, 1, 1, 1], "Seurat": [1, 1, 1, 1, 1, 1, 1, 1], "SeuratData": [0, 1, 1, 1, 1, 1, 1, 1], "SeuratDisk": [1, 1, 1, 0, 1, 1, 1, 1], "SeuratWrappers": [0, 1, 1, 1, 1, 1, 1, 1], "Shapely": [1, 1, 1, 1, 1, 1, 1, 1], "Shasta": [0, 1, 1, 1, 1, 1, 1, 1], "Short-Pair": [1, 1, 1, 0, 1, 1, 1, 1], "SiNVICT": [0, 1, 1, 0, 1, 1, 1, 1], "Sibelia": [0, 1, 1, 1, 1, 1, 1, 1], "SimNIBS": [0, 1, 1, 1, 1, 1, 1, 1], "SimPEG": [1, 1, 1, 0, 1, 1, 1, 1], "SimpleElastix": [0, 1, 1, 0, 1, 1, 0, 1], "SimpleITK": [1, 1, 1, 1, 1, 1, 1, 1], "SlamDunk": [1, 1, 1, 0, 1, 1, 1, 1], "Sniffles": [1, 1, 1, 1, 1, 1, 1, 1], "SoX": [1, 1, 1, 0, 1, 1, 0, 1], "Spark": [1, 1, 1, 0, 1, 1, 1, 1], "SpatialDE": [1, 1, 1, 1, 1, 1, 1, 1], "Spyder": [0, 1, 1, 0, 1, 1, 1, 1], "SqueezeMeta": [1, 1, 1, 0, 1, 1, 1, 1], "Squidpy": [1, 1, 1, 0, 1, 1, 1, 1], "Stacks": [0, 1, 1, 0, 1, 1, 1, 1], "Stata": [0, 1, 1, 0, 1, 1, 1, 1], "Statistics-R": [0, 1, 1, 0, 1, 1, 1, 1], "StringTie": [0, 1, 1, 0, 1, 0, 0, 0], "Structure": [0, 1, 0, 0, 0, 0, 0, 0], "Structure_threader": [1, 1, 1, 1, 1, 1, 1, 1], "SuAVE-biomat": [1, 1, 1, 1, 1, 1, 1, 1], "Subread": [0, 1, 1, 0, 1, 1, 1, 1], "Subversion": [1, 1, 1, 0, 1, 1, 1, 1], "SuiteSparse": [1, 1, 1, 1, 1, 1, 1, 1], "SuperLU": [0, 1, 1, 0, 1, 1, 1, 1], "SuperLU_DIST": [1, 1, 1, 0, 1, 1, 1, 1], "Szip": [1, 1, 1, 1, 1, 1, 1, 1], "TALON": [0, 1, 1, 1, 1, 1, 1, 1], "TAMkin": [1, 1, 1, 1, 1, 1, 1, 1], "TCLAP": [0, 1, 1, 0, 1, 1, 1, 1], "TELEMAC-MASCARET": [1, 1, 1, 0, 1, 1, 1, 1], "TEtranscripts": [0, 1, 1, 0, 1, 1, 1, 1], "TOBIAS": [1, 1, 1, 0, 1, 1, 1, 1], "TOPAS": [1, 1, 1, 1, 1, 1, 1, 1], "TRF": [1, 1, 1, 1, 1, 1, 1, 1], "TRUST4": [1, 1, 1, 0, 1, 1, 1, 1], "Tcl": [1, 1, 1, 1, 1, 1, 1, 1], "TensorFlow": [1, 1, 1, 1, 1, 1, 1, 1], "Theano": [1, 1, 1, 1, 1, 1, 1, 1], "Tk": [1, 1, 1, 1, 1, 1, 1, 1], "Tkinter": [1, 1, 1, 1, 1, 1, 1, 1], "Togl": [1, 1, 1, 0, 1, 1, 1, 1], "Tombo": [0, 1, 1, 0, 1, 1, 0, 1], "TopHat": [1, 1, 1, 1, 1, 1, 1, 1], "TransDecoder": [0, 1, 1, 0, 1, 1, 0, 1], "TranscriptClean": [0, 1, 1, 1, 1, 1, 1, 1], "Transformers": [1, 1, 1, 1, 1, 1, 1, 1], "TreeMix": [1, 1, 1, 0, 1, 1, 1, 1], "Trilinos": [0, 1, 1, 0, 1, 1, 1, 1], "Trim_Galore": [0, 1, 1, 1, 1, 1, 1, 1], "Trimmomatic": [1, 1, 1, 1, 1, 1, 1, 1], "Trinity": [1, 1, 1, 1, 1, 1, 1, 1], "Trycycler": [0, 1, 1, 0, 1, 1, 1, 1], "TurboVNC": [1, 1, 1, 1, 1, 1, 1, 1], "UCC": [1, 1, 1, 1, 1, 1, 1, 1], "UCLUST": [0, 1, 1, 0, 1, 1, 0, 1], "UCX": [1, 1, 1, 1, 1, 1, 1, 1], "UCX-CUDA": [1, 0, 1, 0, 1, 0, 0, 0], "UDUNITS": [1, 1, 1, 1, 1, 1, 1, 1], "UFL": [0, 1, 1, 0, 1, 1, 1, 1], "UMI-tools": [0, 1, 1, 0, 1, 1, 0, 1], "UQTk": [0, 0, 1, 0, 1, 1, 0, 1], "USEARCH": [1, 1, 1, 1, 1, 1, 1, 1], "UnZip": [1, 1, 1, 1, 1, 1, 1, 1], "Unicycler": [0, 1, 1, 0, 1, 1, 1, 1], "Unidecode": [1, 1, 1, 1, 1, 1, 1, 1], "VASP": [1, 1, 1, 1, 1, 1, 1, 1], "VBZ-Compression": [0, 0, 1, 1, 1, 1, 0, 1], "VCFtools": [0, 1, 1, 0, 1, 1, 1, 1], "VEP": [1, 1, 1, 0, 1, 1, 1, 1], "VESTA": [1, 1, 1, 0, 1, 1, 1, 1], "VMD": [0, 1, 1, 1, 1, 1, 1, 1], "VMTK": [0, 1, 1, 0, 1, 1, 1, 1], "VSEARCH": [1, 1, 1, 1, 1, 1, 1, 1], "VTK": [1, 1, 1, 1, 1, 1, 1, 1], "VTune": [0, 0, 0, 0, 0, 1, 0, 1], "Vala": [0, 1, 1, 0, 1, 1, 1, 1], "Valgrind": [1, 1, 1, 0, 1, 1, 1, 1], "VarScan": [1, 1, 1, 0, 1, 1, 1, 1], "Velvet": [1, 1, 1, 1, 1, 1, 1, 1], "VirSorter2": [1, 1, 1, 1, 1, 1, 1, 1], "Voro++": [1, 1, 1, 0, 1, 1, 1, 1], "WHAM": [0, 1, 1, 0, 1, 1, 1, 1], "WIEN2k": [0, 1, 1, 1, 1, 1, 1, 1], "WPS": [0, 1, 1, 0, 1, 1, 0, 1], "WRF": [0, 1, 1, 1, 1, 1, 1, 1], "Wannier90": [1, 1, 1, 1, 1, 1, 1, 1], "Wayland": [1, 1, 1, 1, 1, 1, 1, 1], "Waylandpp": [1, 1, 1, 1, 1, 1, 1, 1], "WebKitGTK+": [1, 1, 1, 1, 1, 1, 1, 1], "WhatsHap": [1, 1, 1, 1, 1, 1, 1, 1], "Winnowmap": [0, 1, 0, 0, 0, 1, 0, 1], "WisecondorX": [0, 1, 1, 0, 1, 1, 1, 1], "X11": [1, 1, 1, 1, 1, 1, 1, 1], "XCFun": [1, 1, 1, 1, 1, 1, 1, 1], "XCrySDen": [1, 1, 1, 0, 1, 1, 1, 1], "XGBoost": [1, 1, 1, 1, 1, 1, 1, 1], "XML-Compile": [1, 1, 1, 0, 1, 1, 1, 1], "XML-LibXML": [1, 1, 1, 1, 1, 1, 1, 1], "XZ": [1, 1, 1, 1, 1, 1, 1, 1], "Xerces-C++": [1, 1, 1, 1, 1, 1, 1, 1], "XlsxWriter": [1, 1, 1, 1, 1, 1, 1, 1], "Xvfb": [1, 1, 1, 1, 1, 1, 1, 1], "YACS": [1, 0, 0, 0, 1, 0, 0, 0], "YANK": [0, 1, 1, 0, 1, 1, 1, 1], "YAXT": [1, 1, 1, 0, 1, 1, 1, 1], "Yambo": [1, 1, 1, 1, 1, 1, 1, 1], "Yasm": [1, 1, 1, 1, 1, 1, 1, 1], "Z3": [1, 1, 1, 1, 1, 1, 1, 1], "ZeroMQ": [1, 1, 1, 1, 1, 1, 1, 1], "Zip": [1, 1, 1, 1, 1, 1, 1, 1], "Zopfli": [1, 1, 1, 1, 1, 1, 1, 1], "adjustText": [1, 1, 1, 0, 1, 1, 1, 1], "aiohttp": [1, 1, 1, 1, 1, 1, 1, 1], "alevin-fry": [0, 1, 0, 0, 0, 0, 1, 0], "alleleCount": [1, 1, 1, 1, 1, 1, 1, 1], "alleleIntegrator": [1, 1, 1, 1, 1, 1, 1, 1], "angsd": [1, 1, 1, 1, 1, 1, 1, 1], "anndata": [1, 1, 1, 1, 1, 1, 1, 1], "ant": [1, 1, 1, 1, 1, 1, 1, 1], "antiSMASH": [0, 1, 1, 1, 1, 1, 1, 1], "anvio": [0, 1, 1, 0, 1, 1, 0, 1], "any2fasta": [0, 1, 1, 0, 1, 1, 1, 1], "apex": [0, 0, 0, 0, 1, 0, 0, 0], "archspec": [1, 1, 1, 0, 1, 1, 1, 1], "argtable": [1, 1, 1, 0, 1, 1, 1, 1], "aria2": [0, 1, 1, 0, 1, 1, 1, 1], "arpack-ng": [1, 1, 1, 1, 1, 1, 1, 1], "arrow": [0, 1, 1, 0, 1, 1, 1, 1], "arrow-R": [1, 1, 1, 1, 1, 1, 1, 1], "at-spi2-atk": [1, 1, 1, 1, 1, 1, 1, 1], "at-spi2-core": [1, 1, 1, 1, 1, 1, 1, 1], "atools": [1, 1, 1, 0, 1, 1, 1, 1], "attr": [1, 1, 1, 0, 1, 1, 1, 1], "attrdict": [0, 1, 1, 0, 1, 1, 0, 1], "attrdict3": [1, 1, 1, 1, 1, 1, 1, 1], "augur": [0, 1, 1, 0, 1, 1, 0, 1], "awscli": [1, 1, 1, 1, 1, 1, 1, 1], "babl": [0, 1, 1, 0, 1, 1, 1, 1], "bam-readcount": [0, 1, 1, 0, 1, 1, 1, 1], "bamFilters": [1, 1, 1, 0, 1, 1, 1, 1], "barrnap": [1, 1, 1, 1, 1, 1, 1, 1], "basemap": [0, 1, 1, 0, 1, 1, 0, 1], "bcbio-gff": [1, 1, 1, 1, 1, 1, 1, 1], "bcgTree": [1, 1, 1, 0, 1, 1, 1, 1], "bcl-convert": [1, 1, 1, 0, 1, 1, 1, 1], "bcl2fastq2": [1, 1, 1, 0, 1, 1, 1, 1], "beagle-lib": [1, 1, 1, 1, 1, 1, 1, 1], "binutils": [1, 1, 1, 1, 1, 1, 1, 1], "biobambam2": [1, 1, 1, 1, 1, 1, 1, 1], "biogeme": [1, 1, 1, 0, 1, 1, 1, 1], "biom-format": [1, 1, 1, 1, 1, 1, 1, 1], "bmtagger": [0, 1, 1, 1, 1, 1, 1, 1], "bokeh": [1, 1, 1, 1, 1, 1, 1, 1], "boto3": [1, 1, 1, 1, 1, 1, 1, 1], "bpp": [0, 1, 1, 0, 1, 0, 1, 0], "build": [1, 1, 1, 1, 1, 1, 1, 1], "buildenv": [0, 1, 1, 0, 1, 1, 0, 1], "buildingspy": [1, 1, 1, 0, 1, 1, 1, 1], "bwa-meth": [1, 1, 1, 1, 1, 1, 1, 1], "bwidget": [1, 1, 1, 0, 1, 1, 1, 1], "bx-python": [1, 1, 1, 1, 1, 1, 1, 1], "bzip2": [1, 1, 1, 1, 1, 1, 1, 1], "c-ares": [1, 1, 1, 1, 1, 1, 1, 1], "cURL": [1, 1, 1, 1, 1, 1, 1, 1], "cairo": [1, 1, 1, 1, 1, 1, 1, 1], "canu": [1, 1, 1, 0, 1, 1, 1, 1], "carputils": [0, 1, 1, 1, 1, 1, 1, 1], "ccache": [1, 1, 1, 1, 1, 1, 1, 1], "cctbx-base": [1, 1, 1, 1, 1, 1, 1, 1], "cdbfasta": [0, 1, 1, 0, 1, 0, 0, 0], "cdo-bindings": [1, 1, 1, 1, 1, 1, 1, 1], "cdsapi": [1, 1, 1, 0, 1, 1, 1, 1], "cell2location": [0, 0, 0, 0, 1, 0, 0, 0], "cffi": [1, 1, 1, 1, 1, 1, 1, 1], "chemprop": [1, 1, 1, 1, 1, 1, 1, 1], "chewBBACA": [0, 1, 1, 0, 1, 1, 1, 1], "cicero": [1, 1, 1, 1, 1, 1, 1, 1], "code-server": [1, 1, 1, 1, 1, 1, 1, 1], "colossalai": [1, 0, 0, 0, 1, 0, 0, 0], "conan": [1, 1, 1, 1, 1, 1, 1, 1], "cooler": [1, 1, 1, 1, 1, 1, 1, 1], "coverage": [0, 1, 1, 0, 1, 1, 1, 1], "cppy": [1, 1, 1, 1, 1, 1, 1, 1], "cpu_features": [0, 1, 1, 1, 1, 1, 1, 1], "cryoDRGN": [1, 0, 0, 0, 1, 0, 0, 0], "cryptography": [1, 1, 1, 1, 1, 1, 1, 1], "cuDNN": [1, 1, 1, 0, 1, 1, 1, 1], "cuTENSOR": [0, 0, 0, 0, 1, 0, 0, 0], "cutadapt": [1, 1, 1, 1, 1, 1, 1, 1], "cuteSV": [1, 1, 1, 1, 1, 1, 1, 1], "cython-blis": [1, 1, 1, 1, 1, 1, 1, 1], "dask": [1, 1, 1, 1, 1, 1, 1, 1], "dbus-glib": [1, 1, 1, 1, 1, 1, 1, 1], "dclone": [1, 1, 1, 1, 1, 1, 1, 1], "deal.II": [0, 1, 1, 0, 1, 1, 1, 1], "decona": [0, 1, 1, 0, 1, 1, 1, 1], "deepTools": [1, 1, 1, 0, 1, 1, 1, 1], "deepdiff": [1, 1, 1, 1, 1, 1, 1, 1], "detectron2": [1, 0, 0, 0, 1, 0, 0, 0], "dicom2nifti": [1, 1, 1, 1, 1, 1, 1, 1], "dijitso": [0, 1, 1, 0, 1, 1, 1, 1], "dill": [1, 1, 1, 1, 1, 1, 1, 1], "dlib": [0, 1, 1, 0, 1, 1, 1, 1], "dm-haiku": [1, 0, 0, 0, 1, 0, 0, 0], "dm-tree": [1, 1, 1, 1, 1, 1, 1, 1], "dorado": [1, 0, 0, 0, 1, 0, 0, 0], "double-conversion": [1, 1, 1, 1, 1, 1, 1, 1], "dtcwt": [0, 1, 1, 0, 1, 1, 0, 1], "duplex-tools": [1, 1, 1, 1, 1, 1, 1, 1], "eSpeak-NG": [0, 1, 1, 0, 1, 1, 1, 1], "ecCodes": [1, 1, 1, 1, 1, 1, 1, 1], "edlib": [1, 1, 1, 1, 1, 1, 1, 1], "eggnog-mapper": [1, 1, 1, 1, 1, 1, 1, 1], "einops": [1, 1, 1, 1, 1, 1, 1, 1], "elfutils": [1, 1, 1, 1, 1, 1, 1, 1], "elprep": [0, 1, 1, 0, 1, 0, 1, 0], "enchant-2": [1, 1, 1, 1, 1, 1, 1, 1], "epiScanpy": [1, 1, 1, 1, 1, 1, 1, 1], "exiv2": [1, 1, 1, 1, 1, 1, 1, 1], "expat": [1, 1, 1, 1, 1, 1, 1, 1], "expecttest": [1, 1, 1, 1, 1, 1, 1, 1], "fastahack": [0, 1, 1, 0, 1, 1, 1, 1], "fastai": [1, 1, 1, 1, 1, 1, 1, 1], "fastp": [1, 1, 1, 0, 1, 1, 1, 1], "fermi-lite": [0, 1, 1, 0, 1, 1, 1, 1], "festival": [0, 1, 1, 0, 1, 1, 1, 1], "fetchMG": [0, 1, 1, 0, 1, 1, 0, 1], "ffnvcodec": [1, 1, 1, 1, 1, 1, 1, 1], "file": [1, 1, 1, 1, 1, 1, 1, 1], "filevercmp": [0, 1, 1, 0, 1, 1, 1, 1], "finder": [1, 1, 1, 1, 1, 1, 1, 1], "flair-NLP": [1, 1, 1, 0, 1, 1, 1, 1], "flatbuffers": [1, 1, 1, 1, 1, 1, 1, 1], "flatbuffers-python": [1, 1, 1, 1, 1, 1, 1, 1], "flex": [1, 1, 1, 1, 1, 1, 1, 1], "flit": [1, 1, 1, 1, 1, 1, 1, 1], "flowFDA": [1, 1, 1, 1, 1, 1, 1, 1], "fmt": [1, 1, 1, 0, 1, 1, 1, 1], "fontconfig": [1, 1, 1, 1, 1, 1, 1, 1], "foss": [1, 1, 1, 1, 1, 1, 1, 1], "fosscuda": [1, 0, 0, 0, 1, 0, 0, 0], "freebayes": [0, 1, 1, 0, 1, 0, 1, 0], "freeglut": [1, 1, 1, 1, 1, 1, 1, 1], "freetype": [1, 1, 1, 1, 1, 1, 1, 1], "freetype-py": [0, 1, 1, 0, 1, 1, 1, 1], "fsom": [0, 1, 1, 0, 1, 1, 1, 1], "funannotate": [1, 1, 1, 1, 1, 1, 1, 1], "g2clib": [0, 1, 1, 0, 1, 1, 1, 1], "g2lib": [0, 1, 1, 0, 1, 1, 0, 1], "g2log": [0, 1, 1, 0, 1, 1, 0, 1], "garnett": [0, 1, 1, 1, 1, 1, 1, 1], "gawk": [0, 1, 1, 1, 1, 1, 1, 1], "gbasis": [1, 1, 1, 1, 1, 1, 1, 1], "gc": [1, 1, 1, 1, 1, 1, 1, 1], "gcccuda": [1, 1, 1, 1, 1, 1, 1, 1], "gcloud": [0, 1, 1, 0, 1, 1, 1, 1], "gdbm": [0, 1, 1, 0, 1, 1, 1, 1], "gdc-client": [1, 1, 1, 1, 0, 1, 1, 1], "gengetopt": [0, 1, 1, 1, 1, 1, 1, 1], "genomepy": [1, 1, 1, 1, 1, 1, 1, 1], "genozip": [1, 1, 1, 0, 1, 1, 1, 1], "gensim": [1, 1, 1, 1, 1, 1, 1, 1], "geopandas": [1, 1, 1, 1, 1, 1, 1, 1], "gettext": [1, 1, 1, 1, 1, 1, 1, 1], "gexiv2": [0, 1, 1, 0, 1, 1, 1, 1], "gfbf": [1, 1, 1, 1, 1, 1, 1, 1], "gffread": [1, 1, 1, 1, 1, 1, 1, 1], "gffutils": [1, 1, 1, 1, 1, 1, 1, 1], "gflags": [0, 1, 1, 0, 1, 1, 0, 1], "giflib": [1, 1, 1, 1, 1, 1, 1, 1], "git": [1, 1, 1, 1, 1, 1, 1, 1], "git-lfs": [1, 1, 1, 0, 1, 1, 1, 1], "glew": [1, 1, 1, 1, 1, 1, 1, 1], "glib-networking": [1, 1, 1, 1, 1, 1, 1, 1], "glibc": [0, 1, 0, 0, 0, 1, 0, 1], "glog": [0, 1, 1, 0, 1, 1, 0, 1], "gmpy2": [1, 1, 1, 1, 1, 1, 1, 1], "gmsh": [0, 1, 1, 0, 1, 1, 1, 1], "gnuplot": [1, 1, 1, 1, 1, 1, 1, 1], "goalign": [0, 0, 1, 0, 1, 0, 0, 0], "gobff": [0, 1, 0, 0, 0, 0, 0, 0], "gomkl": [1, 1, 1, 1, 1, 1, 1, 1], "gompi": [1, 1, 1, 1, 1, 1, 1, 1], "gompic": [1, 1, 0, 0, 1, 1, 1, 1], "googletest": [1, 1, 1, 1, 1, 1, 1, 1], "gotree": [0, 0, 1, 0, 1, 0, 0, 0], "gperf": [1, 1, 1, 1, 1, 1, 1, 1], "gperftools": [1, 1, 1, 1, 1, 1, 1, 1], "gpustat": [0, 0, 0, 0, 1, 0, 0, 0], "graphite2": [1, 1, 1, 1, 1, 1, 1, 1], "graphviz-python": [1, 1, 1, 1, 1, 1, 1, 1], "grid": [1, 1, 1, 1, 1, 1, 1, 1], "groff": [1, 1, 1, 1, 1, 1, 1, 1], "gzip": [1, 1, 1, 1, 1, 1, 1, 1], "h5py": [1, 1, 1, 1, 1, 1, 1, 1], "harmony": [0, 1, 1, 0, 1, 1, 1, 1], "hatchling": [1, 1, 1, 1, 1, 1, 1, 1], "help2man": [1, 1, 1, 1, 1, 1, 1, 1], "hierfstat": [0, 1, 1, 0, 1, 1, 1, 1], "hiredis": [1, 1, 1, 1, 1, 1, 1, 1], "histolab": [1, 1, 1, 0, 1, 1, 1, 1], "horton": [0, 1, 1, 0, 1, 1, 1, 1], "how_are_we_stranded_here": [1, 1, 1, 0, 1, 1, 1, 1], "hunspell": [1, 1, 1, 1, 1, 1, 1, 1], "hwloc": [1, 1, 1, 1, 1, 1, 1, 1], "hyperopt": [0, 1, 1, 0, 1, 0, 0, 0], "hypothesis": [1, 1, 1, 1, 1, 1, 1, 1], "iccifort": [1, 1, 1, 1, 1, 1, 1, 1], "iccifortcuda": [0, 0, 0, 0, 1, 0, 0, 0], "ichorCNA": [0, 1, 1, 0, 1, 1, 1, 1], "idemux": [0, 1, 1, 0, 1, 1, 1, 1], "igraph": [1, 1, 1, 1, 1, 1, 1, 1], "iibff": [0, 1, 0, 0, 0, 0, 0, 0], "iimpi": [1, 1, 1, 1, 1, 1, 1, 1], "iimpic": [0, 0, 0, 0, 1, 0, 0, 0], "imagecodecs": [1, 1, 1, 1, 1, 1, 1, 1], "imageio": [1, 1, 1, 1, 1, 1, 1, 1], "imbalanced-learn": [1, 1, 1, 1, 1, 1, 1, 1], "imgaug": [1, 1, 1, 0, 1, 1, 1, 1], "imkl": [1, 1, 1, 1, 1, 1, 1, 1], "imkl-FFTW": [1, 1, 1, 1, 1, 1, 1, 1], "impi": [1, 1, 1, 1, 1, 1, 1, 1], "inferCNV": [1, 1, 1, 1, 1, 1, 1, 1], "infercnvpy": [1, 1, 1, 1, 1, 1, 1, 1], "intel": [1, 1, 1, 1, 1, 1, 1, 1], "intel-compilers": [1, 1, 1, 1, 1, 1, 1, 1], "intelcuda": [0, 0, 0, 0, 1, 0, 0, 0], "intervaltree": [0, 1, 1, 0, 1, 1, 1, 1], "intervaltree-python": [1, 1, 1, 1, 1, 1, 1, 1], "intltool": [1, 1, 1, 1, 1, 1, 1, 1], "iodata": [1, 1, 1, 1, 1, 1, 1, 1], "iomkl": [1, 1, 1, 1, 1, 1, 1, 1], "iompi": [1, 1, 1, 1, 1, 1, 1, 1], "isoCirc": [0, 1, 1, 1, 1, 1, 1, 1], "jax": [1, 1, 1, 1, 1, 1, 1, 1], "jbigkit": [1, 1, 1, 1, 1, 1, 1, 1], "jemalloc": [1, 1, 1, 1, 1, 1, 1, 1], "jobcli": [0, 1, 0, 0, 0, 0, 1, 0], "joypy": [0, 1, 1, 0, 1, 1, 1, 1], "json-c": [1, 1, 1, 1, 1, 1, 1, 1], "jupyter-server": [0, 0, 1, 0, 1, 0, 0, 0], "jxrlib": [1, 1, 1, 1, 1, 1, 1, 1], "kallisto": [1, 1, 1, 1, 1, 1, 1, 1], "kb-python": [1, 1, 1, 1, 1, 1, 1, 1], "kim-api": [1, 1, 1, 0, 1, 1, 1, 1], "kineto": [1, 1, 1, 1, 1, 1, 1, 1], "kma": [0, 1, 1, 0, 1, 1, 0, 1], "krbalancing": [1, 1, 1, 1, 1, 1, 1, 1], "lancet": [0, 1, 0, 0, 0, 0, 0, 0], "lavaan": [0, 1, 1, 0, 1, 1, 1, 1], "leafcutter": [1, 1, 1, 1, 1, 1, 1, 1], "legacy-job-wrappers": [0, 1, 1, 0, 1, 0, 1, 0], "leidenalg": [1, 1, 1, 1, 1, 1, 1, 1], "lftp": [1, 1, 1, 0, 1, 1, 1, 1], "libBigWig": [0, 1, 1, 0, 1, 1, 0, 1], "libFLAME": [0, 1, 0, 0, 0, 0, 0, 0], "libGLU": [1, 1, 1, 1, 1, 1, 1, 1], "libRmath": [0, 1, 1, 0, 1, 1, 1, 1], "libaec": [1, 1, 1, 1, 1, 1, 1, 1], "libaio": [1, 1, 1, 1, 1, 1, 1, 1], "libarchive": [1, 1, 1, 1, 1, 1, 1, 1], "libavif": [1, 1, 1, 1, 1, 1, 1, 1], "libcdms": [0, 1, 1, 0, 1, 1, 1, 1], "libcerf": [1, 1, 1, 1, 1, 1, 1, 1], "libcint": [1, 1, 1, 1, 1, 1, 1, 1], "libdap": [0, 1, 1, 0, 1, 1, 1, 1], "libde265": [1, 1, 1, 1, 1, 1, 1, 1], "libdeflate": [1, 1, 1, 1, 1, 1, 1, 1], "libdrm": [1, 1, 1, 1, 1, 1, 1, 1], "libdrs": [0, 1, 1, 0, 1, 1, 1, 1], "libepoxy": [1, 1, 1, 1, 1, 1, 1, 1], "libev": [1, 1, 1, 1, 1, 1, 1, 1], "libevent": [1, 1, 1, 1, 1, 1, 1, 1], "libfabric": [1, 1, 1, 1, 1, 1, 1, 1], "libffi": [1, 1, 1, 1, 1, 1, 1, 1], "libgcrypt": [1, 1, 1, 1, 1, 1, 1, 1], "libgd": [1, 1, 1, 1, 1, 1, 1, 1], "libgeotiff": [1, 1, 1, 1, 1, 1, 1, 1], "libgit2": [1, 1, 1, 1, 1, 1, 1, 1], "libglvnd": [1, 1, 1, 1, 1, 1, 1, 1], "libgpg-error": [1, 1, 1, 1, 1, 1, 1, 1], "libgpuarray": [1, 0, 0, 0, 1, 0, 0, 0], "libharu": [1, 1, 1, 0, 1, 1, 1, 1], "libheif": [1, 1, 1, 1, 1, 1, 1, 1], "libiconv": [1, 1, 1, 1, 1, 1, 1, 1], "libidn": [1, 1, 1, 1, 1, 1, 1, 1], "libidn2": [1, 1, 1, 1, 1, 1, 1, 1], "libjpeg-turbo": [1, 1, 1, 1, 1, 1, 1, 1], "libjxl": [1, 1, 1, 1, 1, 1, 1, 1], "libmad": [1, 0, 1, 0, 1, 0, 0, 0], "libmatheval": [0, 1, 1, 0, 1, 1, 1, 1], "libmaus2": [1, 1, 1, 1, 1, 1, 1, 1], "libmypaint": [0, 1, 1, 0, 1, 1, 1, 1], "libobjcryst": [1, 1, 1, 0, 1, 1, 1, 1], "libogg": [1, 1, 1, 1, 1, 1, 1, 1], "libopus": [1, 1, 1, 1, 1, 1, 1, 1], "libpciaccess": [1, 1, 1, 1, 1, 1, 1, 1], "libpng": [1, 1, 1, 1, 1, 1, 1, 1], "libpsl": [1, 1, 1, 1, 1, 1, 1, 1], "libreadline": [1, 1, 1, 1, 1, 1, 1, 1], "librosa": [0, 0, 1, 0, 1, 1, 0, 1], "librsvg": [0, 1, 1, 0, 1, 1, 1, 1], "librttopo": [1, 1, 1, 1, 1, 1, 1, 1], "libsigc++": [0, 1, 1, 0, 1, 1, 1, 1], "libsndfile": [1, 1, 1, 1, 1, 1, 1, 1], "libsodium": [1, 1, 1, 1, 1, 1, 1, 1], "libspatialindex": [1, 1, 1, 1, 1, 1, 1, 1], "libspatialite": [1, 1, 1, 1, 1, 1, 1, 1], "libtasn1": [1, 1, 1, 1, 1, 1, 1, 1], "libtirpc": [1, 1, 1, 1, 1, 1, 1, 1], "libtool": [1, 1, 1, 1, 1, 1, 1, 1], "libunistring": [1, 1, 1, 1, 1, 1, 1, 1], "libunwind": [1, 1, 1, 1, 1, 1, 1, 1], "libvdwxc": [1, 1, 1, 0, 1, 1, 1, 1], "libvorbis": [1, 1, 1, 1, 1, 1, 1, 1], "libvori": [1, 1, 1, 1, 1, 1, 1, 1], "libwebp": [1, 1, 1, 1, 1, 1, 1, 1], "libwpe": [1, 1, 1, 1, 1, 1, 1, 1], "libxc": [1, 1, 1, 1, 1, 1, 1, 1], "libxml++": [0, 1, 1, 0, 1, 1, 1, 1], "libxml2": [1, 1, 1, 1, 1, 1, 1, 1], "libxslt": [1, 1, 1, 1, 1, 1, 1, 1], "libxsmm": [1, 1, 1, 1, 1, 1, 1, 1], "libyaml": [1, 1, 1, 1, 1, 1, 1, 1], "libzip": [1, 1, 1, 1, 1, 1, 1, 1], "lifelines": [1, 1, 1, 1, 1, 1, 1, 1], "likwid": [0, 0, 1, 0, 1, 0, 0, 0], "longread_umi": [0, 1, 1, 1, 1, 1, 1, 1], "loomR": [1, 1, 1, 1, 1, 1, 1, 1], "loompy": [1, 1, 1, 1, 1, 1, 1, 1], "louvain": [1, 1, 1, 1, 1, 1, 1, 1], "lpsolve": [1, 1, 1, 1, 1, 1, 1, 1], "lxml": [1, 1, 1, 1, 1, 1, 1, 1], "lz4": [1, 1, 1, 1, 1, 1, 1, 1], "maeparser": [1, 1, 1, 1, 1, 1, 1, 1], "magma": [1, 0, 1, 0, 1, 0, 0, 0], "mahotas": [1, 1, 1, 1, 1, 1, 1, 1], "make": [1, 1, 1, 1, 1, 1, 1, 1], "makedepend": [0, 1, 1, 0, 1, 1, 1, 1], "makeinfo": [1, 1, 1, 1, 1, 1, 1, 1], "manta": [0, 1, 1, 0, 1, 1, 1, 1], "mapDamage": [1, 1, 1, 0, 1, 1, 1, 1], "matplotlib": [1, 1, 1, 1, 1, 1, 1, 1], "mauveAligner": [0, 1, 1, 0, 1, 1, 0, 1], "maze": [0, 1, 1, 1, 1, 1, 1, 1], "mcu": [1, 1, 1, 0, 1, 1, 1, 1], "medImgProc": [0, 1, 0, 0, 0, 1, 0, 1], "medaka": [1, 1, 1, 1, 1, 1, 1, 1], "meshalyzer": [0, 1, 1, 1, 1, 1, 1, 1], "meshtool": [0, 1, 1, 1, 1, 1, 1, 1], "metaWRAP": [0, 1, 1, 1, 1, 1, 1, 1], "metaerg": [0, 1, 1, 0, 1, 1, 0, 1], "methylpy": [1, 1, 1, 0, 1, 1, 1, 1], "mgen": [1, 1, 1, 1, 1, 1, 1, 1], "mgltools": [1, 1, 1, 0, 1, 1, 1, 1], "mhcnuggets": [0, 1, 1, 1, 1, 1, 1, 1], "microctools": [0, 1, 1, 1, 1, 1, 1, 1], "minibar": [0, 1, 1, 0, 1, 0, 0, 0], "minimap2": [1, 1, 1, 1, 1, 1, 1, 1], "minizip": [1, 1, 1, 1, 1, 1, 1, 1], "misha": [0, 1, 1, 0, 1, 1, 1, 1], "mkl-service": [1, 1, 1, 0, 1, 1, 1, 1], "mm-common": [0, 1, 1, 0, 1, 1, 1, 1], "molmod": [1, 1, 1, 1, 1, 1, 1, 1], "mongolite": [0, 1, 1, 1, 1, 1, 1, 1], "monitor": [0, 1, 1, 0, 1, 0, 1, 0], "mosdepth": [1, 1, 1, 0, 1, 1, 1, 1], "motionSegmentation": [0, 1, 0, 0, 0, 1, 0, 1], "mpi4py": [1, 1, 1, 1, 1, 1, 1, 1], "mrcfile": [1, 1, 1, 1, 1, 1, 1, 1], "muParser": [0, 1, 1, 1, 1, 1, 1, 1], "mujoco-py": [1, 1, 1, 1, 1, 1, 1, 1], "multichoose": [0, 1, 1, 0, 1, 1, 1, 1], "mygene": [1, 1, 1, 1, 1, 1, 1, 1], "mysqlclient": [1, 1, 1, 0, 1, 1, 1, 1], "nanocompore": [0, 1, 1, 0, 1, 1, 1, 1], "nanofilt": [0, 1, 1, 0, 1, 1, 1, 1], "nanoget": [1, 1, 1, 1, 1, 1, 1, 1], "nanomath": [1, 1, 1, 1, 1, 1, 1, 1], "nanopolish": [0, 1, 1, 1, 1, 1, 1, 1], "napari": [1, 1, 1, 0, 1, 1, 1, 1], "ncbi-vdb": [1, 1, 1, 1, 1, 1, 1, 1], "ncdf4": [1, 1, 1, 1, 1, 1, 1, 1], "ncolor": [1, 1, 1, 1, 1, 1, 1, 1], "ncurses": [1, 1, 1, 1, 1, 1, 1, 1], "ncview": [0, 1, 1, 0, 1, 1, 0, 1], "netCDF": [1, 1, 1, 1, 1, 1, 1, 1], "netCDF-C++4": [1, 1, 1, 1, 1, 1, 1, 1], "netCDF-Fortran": [1, 1, 1, 1, 1, 1, 1, 1], "netcdf4-python": [1, 1, 1, 1, 1, 1, 1, 1], "nettle": [1, 1, 1, 1, 1, 1, 1, 1], "networkx": [1, 1, 1, 1, 1, 1, 1, 1], "nghttp2": [1, 1, 1, 1, 1, 1, 1, 1], "nghttp3": [1, 1, 1, 1, 1, 1, 1, 1], "nglview": [1, 1, 1, 1, 1, 1, 1, 1], "ngtcp2": [1, 1, 1, 1, 1, 1, 1, 1], "nichenetr": [1, 1, 1, 1, 1, 1, 1, 1], "nlohmann_json": [1, 1, 1, 1, 1, 1, 1, 1], "nnU-Net": [1, 1, 1, 1, 1, 1, 1, 1], "nodejs": [1, 1, 1, 1, 1, 1, 1, 1], "nsync": [1, 1, 1, 1, 1, 1, 1, 1], "ntCard": [0, 1, 1, 0, 1, 0, 0, 0], "num2words": [1, 0, 0, 0, 1, 0, 0, 0], "numactl": [1, 1, 1, 1, 1, 1, 1, 1], "numba": [1, 1, 1, 1, 1, 1, 1, 1], "numexpr": [1, 1, 1, 1, 1, 1, 1, 1], "nvtop": [1, 0, 0, 0, 0, 0, 0, 0], "olaFlow": [1, 1, 1, 0, 1, 1, 1, 1], "olego": [1, 1, 1, 1, 1, 1, 1, 1], "onedrive": [1, 1, 1, 0, 1, 1, 1, 1], "ont-fast5-api": [1, 1, 1, 1, 1, 1, 1, 1], "openCARP": [0, 1, 1, 1, 1, 1, 1, 1], "openkim-models": [0, 1, 1, 0, 1, 1, 0, 1], "openpyxl": [1, 1, 1, 1, 1, 1, 1, 1], "openslide-python": [1, 1, 1, 0, 1, 1, 1, 1], "orca": [0, 1, 0, 0, 0, 0, 0, 0], "p11-kit": [1, 1, 1, 1, 1, 1, 1, 1], "p4est": [0, 1, 1, 0, 1, 1, 1, 1], "p7zip": [0, 1, 1, 0, 1, 1, 0, 1], "pIRS": [0, 1, 1, 0, 1, 1, 0, 1], "packmol": [0, 1, 1, 0, 1, 1, 1, 1], "pagmo": [0, 1, 1, 1, 1, 1, 1, 1], "pairtools": [1, 1, 1, 0, 1, 1, 1, 1], "panaroo": [0, 1, 1, 1, 1, 1, 1, 1], "pandas": [0, 1, 1, 0, 1, 1, 1, 1], "parallel": [1, 1, 1, 1, 1, 1, 1, 1], "parallel-fastq-dump": [1, 1, 1, 1, 1, 1, 1, 1], "parasail": [1, 1, 1, 1, 1, 1, 1, 1], "patchelf": [1, 1, 1, 1, 1, 1, 1, 1], "pauvre": [0, 1, 1, 0, 1, 1, 1, 1], "pdsh": [1, 1, 1, 1, 1, 1, 1, 1], "peakdetect": [1, 1, 1, 1, 1, 1, 1, 1], "petsc4py": [0, 1, 1, 0, 1, 1, 1, 1], "pftoolsV3": [0, 1, 1, 0, 1, 1, 1, 1], "phonemizer": [0, 1, 1, 0, 1, 1, 1, 1], "phonopy": [1, 1, 1, 1, 1, 1, 1, 1], "phototonic": [0, 1, 1, 0, 1, 1, 1, 1], "picard": [1, 1, 1, 1, 1, 1, 1, 1], "pigz": [1, 1, 1, 1, 1, 1, 1, 1], "pixman": [1, 1, 1, 1, 1, 1, 1, 1], "pkg-config": [1, 1, 1, 1, 1, 1, 1, 1], "pkgconf": [1, 1, 1, 1, 1, 1, 1, 1], "pkgconfig": [1, 1, 1, 1, 1, 1, 1, 1], "plot1cell": [1, 1, 1, 1, 1, 1, 1, 1], "plotly-orca": [0, 1, 1, 1, 1, 1, 1, 1], "plotly.py": [1, 1, 1, 1, 1, 1, 1, 1], "pocl": [1, 1, 1, 1, 1, 1, 1, 1], "pod5-file-format": [1, 1, 1, 1, 1, 1, 1, 1], "poetry": [1, 1, 1, 1, 1, 1, 1, 1], "polars": [1, 1, 1, 1, 1, 1, 1, 1], "poppler": [1, 1, 1, 0, 1, 1, 1, 1], "popscle": [1, 1, 1, 1, 1, 1, 1, 1], "porefoam": [0, 1, 1, 0, 1, 1, 1, 1], "powerlaw": [1, 1, 1, 1, 1, 1, 1, 1], "pplacer": [1, 1, 1, 1, 1, 1, 1, 1], "preseq": [1, 1, 1, 1, 1, 1, 1, 1], "presto": [1, 1, 1, 1, 1, 1, 1, 1], "pretty-yaml": [1, 1, 1, 0, 1, 1, 1, 1], "prodigal": [1, 1, 1, 1, 1, 1, 1, 1], "prokka": [0, 1, 1, 1, 1, 1, 1, 1], "protobuf": [1, 1, 1, 1, 1, 1, 1, 1], "protobuf-python": [1, 1, 1, 1, 1, 1, 1, 1], "psutil": [1, 1, 1, 1, 1, 1, 1, 1], "psycopg2": [1, 1, 1, 1, 1, 1, 1, 1], "pugixml": [1, 1, 1, 1, 1, 1, 1, 1], "pullseq": [1, 1, 1, 0, 1, 1, 1, 1], "purge_dups": [1, 1, 1, 0, 1, 1, 1, 1], "pv": [1, 1, 1, 1, 1, 1, 1, 1], "py-cpuinfo": [1, 1, 1, 1, 1, 1, 1, 1], "py3Dmol": [1, 0, 1, 0, 1, 0, 0, 0], "pyBigWig": [1, 1, 1, 1, 1, 1, 1, 1], "pyEGA3": [1, 1, 1, 0, 1, 1, 1, 1], "pyGenomeTracks": [1, 1, 1, 1, 1, 1, 1, 1], "pySCENIC": [0, 1, 1, 0, 1, 1, 1, 1], "pyWannier90": [1, 1, 1, 0, 1, 1, 1, 1], "pybedtools": [1, 1, 1, 1, 1, 1, 1, 1], "pybind11": [1, 1, 1, 1, 1, 1, 1, 1], "pycocotools": [1, 1, 1, 0, 1, 1, 1, 1], "pydantic": [1, 1, 1, 1, 1, 1, 1, 1], "pydicom": [1, 1, 1, 1, 1, 1, 1, 1], "pydot": [1, 1, 1, 1, 1, 1, 1, 1], "pyfaidx": [1, 1, 1, 1, 1, 1, 1, 1], "pyfasta": [0, 1, 1, 1, 1, 1, 1, 1], "pygmo": [0, 1, 1, 1, 1, 1, 1, 1], "pyiron": [1, 1, 1, 1, 1, 1, 1, 1], "pymatgen": [1, 1, 1, 1, 1, 1, 1, 1], "pymbar": [0, 1, 1, 0, 1, 1, 1, 1], "pymca": [0, 1, 1, 1, 1, 1, 1, 1], "pyobjcryst": [1, 1, 1, 0, 1, 1, 1, 1], "pyodbc": [1, 1, 1, 1, 1, 1, 1, 1], "pyparsing": [0, 1, 0, 0, 0, 1, 0, 1], "pyproj": [1, 1, 1, 1, 1, 1, 1, 1], "pyro-api": [0, 0, 0, 0, 1, 0, 0, 0], "pyro-ppl": [0, 0, 0, 0, 1, 0, 0, 0], "pysamstats": [0, 1, 1, 1, 1, 1, 1, 1], "pysndfx": [0, 1, 1, 0, 1, 1, 0, 1], "pyspoa": [1, 1, 1, 1, 1, 1, 1, 1], "pytest-xdist": [1, 1, 1, 1, 1, 1, 1, 1], "python-Levenshtein": [0, 1, 1, 1, 1, 1, 1, 1], "python-igraph": [1, 1, 1, 1, 1, 1, 1, 1], "python-irodsclient": [1, 1, 1, 0, 1, 1, 1, 1], "python-isal": [1, 1, 1, 1, 1, 1, 1, 1], "python-louvain": [1, 1, 1, 1, 1, 1, 1, 1], "python-parasail": [1, 1, 1, 1, 1, 1, 1, 1], "python-telegram-bot": [1, 1, 1, 0, 1, 1, 1, 1], "python-weka-wrapper3": [0, 1, 1, 0, 1, 1, 0, 1], "pythran": [0, 1, 1, 0, 1, 1, 0, 1], "qcat": [0, 1, 1, 0, 1, 1, 1, 1], "qnorm": [1, 1, 1, 1, 1, 1, 1, 1], "rMATS-turbo": [0, 1, 1, 1, 1, 1, 1, 1], "rasterio": [1, 1, 1, 1, 1, 1, 1, 1], "rasterstats": [0, 1, 1, 0, 1, 1, 1, 1], "re2c": [1, 1, 1, 1, 1, 1, 1, 1], "redis-py": [1, 1, 1, 1, 1, 1, 1, 1], "regionmask": [1, 1, 1, 1, 1, 1, 1, 1], "request": [0, 0, 0, 0, 1, 0, 0, 0], "rgdal": [0, 1, 1, 1, 1, 1, 1, 1], "rgeos": [0, 1, 1, 0, 1, 1, 1, 1], "rickflow": [0, 1, 1, 0, 1, 1, 0, 1], "rioxarray": [1, 1, 1, 0, 1, 1, 1, 1], "rjags": [1, 1, 1, 1, 1, 1, 1, 1], "rmarkdown": [0, 1, 1, 1, 1, 1, 1, 1], "rpy2": [1, 1, 1, 1, 1, 1, 1, 1], "rstanarm": [0, 1, 1, 0, 1, 1, 0, 1], "rstudio": [0, 1, 0, 0, 0, 0, 0, 0], "ruamel.yaml": [1, 1, 1, 1, 1, 1, 1, 1], "ruffus": [1, 1, 1, 1, 1, 1, 1, 1], "samblaster": [0, 1, 1, 1, 1, 1, 1, 1], "samclip": [1, 1, 1, 0, 1, 1, 1, 1], "sansa": [0, 1, 1, 1, 1, 1, 1, 1], "sbt": [0, 0, 1, 0, 1, 0, 0, 0], "scArches": [1, 1, 1, 1, 1, 1, 1, 1], "scGeneFit": [0, 1, 1, 0, 1, 1, 1, 1], "scHiCExplorer": [1, 1, 1, 1, 1, 1, 1, 1], "scPred": [1, 1, 1, 0, 1, 1, 1, 1], "scVelo": [0, 1, 1, 0, 1, 1, 1, 1], "scanpy": [1, 1, 1, 1, 1, 1, 1, 1], "sceasy": [1, 1, 1, 1, 1, 1, 1, 1], "scib": [1, 1, 1, 1, 1, 1, 1, 1], "scikit-build": [1, 1, 1, 1, 1, 1, 1, 1], "scikit-image": [1, 1, 1, 1, 1, 1, 1, 1], "scikit-learn": [1, 1, 1, 1, 1, 1, 1, 1], "scikit-misc": [1, 1, 1, 1, 1, 1, 1, 1], "scikit-optimize": [1, 1, 1, 0, 1, 1, 1, 1], "scipy": [0, 1, 1, 0, 1, 1, 1, 1], "scvi-tools": [1, 1, 1, 1, 1, 1, 1, 1], "segemehl": [0, 1, 1, 1, 1, 1, 1, 1], "segmentation-models": [0, 1, 0, 0, 0, 1, 0, 1], "seqtk": [1, 1, 1, 1, 1, 1, 1, 1], "setuptools-rust": [1, 1, 1, 1, 1, 1, 1, 1], "sf": [0, 1, 1, 0, 1, 1, 1, 1], "shovill": [1, 1, 1, 0, 1, 1, 1, 1], "silhouetteRank": [1, 1, 1, 1, 1, 1, 1, 1], "silx": [0, 1, 1, 1, 1, 1, 1, 1], "slepc4py": [0, 1, 1, 0, 1, 1, 1, 1], "slow5tools": [1, 1, 1, 0, 1, 1, 1, 1], "smfishHmrf": [1, 1, 1, 1, 1, 1, 1, 1], "smithwaterman": [0, 1, 1, 0, 1, 1, 1, 1], "smooth-topk": [1, 1, 1, 0, 1, 1, 1, 1], "snakemake": [1, 1, 1, 1, 1, 1, 1, 1], "snappy": [1, 1, 1, 1, 1, 1, 1, 1], "snippy": [0, 1, 1, 0, 1, 0, 1, 0], "snp-sites": [0, 1, 1, 0, 1, 1, 1, 1], "snpEff": [0, 1, 1, 0, 1, 1, 1, 1], "sonic": [0, 1, 1, 0, 1, 1, 1, 1], "spaCy": [1, 1, 1, 1, 1, 1, 1, 1], "spaln": [1, 1, 1, 1, 1, 1, 1, 1], "sparse-neighbors-search": [1, 1, 1, 1, 1, 1, 1, 1], "sparsehash": [0, 1, 1, 0, 1, 1, 0, 1], "spatialreg": [0, 1, 1, 0, 1, 1, 1, 1], "speech_tools": [0, 1, 1, 0, 1, 1, 1, 1], "spglib-python": [1, 1, 1, 1, 1, 1, 1, 1], "spoa": [1, 1, 1, 1, 1, 1, 1, 1], "stardist": [1, 1, 1, 1, 1, 1, 1, 1], "stars": [0, 1, 1, 0, 1, 1, 1, 1], "statsmodels": [1, 1, 1, 1, 1, 1, 1, 1], "suave": [0, 1, 1, 1, 1, 1, 1, 1], "supernova": [0, 0, 0, 0, 0, 1, 0, 1], "swissknife": [0, 1, 1, 0, 1, 1, 0, 1], "sympy": [1, 1, 1, 1, 1, 1, 1, 1], "synthcity": [1, 1, 1, 1, 1, 1, 1, 1], "tMAE": [0, 1, 1, 1, 1, 1, 1, 1], "tabixpp": [0, 1, 1, 0, 1, 1, 1, 1], "task-spooler": [1, 1, 1, 1, 1, 1, 1, 1], "taxator-tk": [0, 1, 1, 1, 1, 1, 1, 1], "tbb": [1, 1, 1, 1, 1, 1, 1, 1], "tbl2asn": [0, 1, 1, 1, 1, 1, 1, 1], "tcsh": [1, 1, 1, 1, 1, 1, 1, 1], "tensorboard": [1, 1, 1, 1, 1, 1, 1, 1], "tensorboardX": [1, 1, 1, 1, 1, 1, 1, 1], "texinfo": [0, 1, 1, 0, 1, 1, 1, 1], "texlive": [0, 1, 1, 0, 1, 1, 1, 1], "tidymodels": [1, 1, 1, 1, 1, 1, 1, 1], "time": [0, 1, 1, 1, 1, 1, 1, 1], "timm": [1, 0, 0, 0, 1, 0, 0, 0], "tmux": [0, 1, 1, 0, 1, 1, 1, 1], "tokenizers": [1, 1, 1, 1, 1, 1, 1, 1], "torchaudio": [1, 0, 0, 0, 1, 0, 0, 0], "torchtext": [1, 1, 1, 1, 1, 1, 1, 1], "torchvf": [1, 1, 1, 1, 1, 1, 1, 1], "torchvision": [1, 1, 1, 1, 1, 1, 1, 1], "tqdm": [1, 1, 1, 1, 1, 1, 1, 1], "treatSens": [0, 1, 1, 0, 1, 1, 1, 1], "trimAl": [1, 1, 1, 1, 1, 1, 1, 1], "tsne": [0, 1, 1, 0, 1, 1, 0, 1], "typing-extensions": [1, 1, 1, 1, 1, 1, 1, 1], "umap-learn": [1, 1, 1, 1, 1, 1, 1, 1], "umi4cPackage": [0, 1, 1, 0, 1, 1, 1, 1], "uncertainty-calibration": [1, 1, 1, 0, 1, 1, 1, 1], "unimap": [0, 1, 1, 1, 1, 1, 1, 1], "unixODBC": [1, 1, 1, 1, 1, 1, 1, 1], "utf8proc": [1, 1, 1, 1, 1, 1, 1, 1], "util-linux": [1, 1, 1, 1, 1, 1, 1, 1], "vConTACT2": [1, 1, 1, 1, 1, 1, 1, 1], "vbz_compression": [0, 1, 0, 0, 0, 0, 1, 0], "vcflib": [0, 1, 1, 0, 1, 1, 1, 1], "velocyto": [1, 1, 1, 1, 1, 1, 1, 1], "virtualenv": [1, 1, 1, 1, 1, 1, 1, 1], "vispr": [1, 1, 1, 1, 1, 1, 1, 1], "vitessce-python": [1, 1, 1, 1, 1, 1, 1, 1], "vitessceR": [1, 1, 1, 1, 1, 1, 1, 1], "vsc-mympirun": [1, 1, 1, 1, 1, 1, 1, 1], "vt": [0, 1, 1, 0, 1, 0, 1, 0], "wandb": [1, 1, 1, 0, 1, 1, 1, 1], "waves2Foam": [0, 1, 1, 0, 1, 1, 0, 1], "wget": [1, 1, 1, 1, 1, 1, 1, 1], "wgsim": [0, 1, 1, 0, 1, 1, 1, 1], "worker": [1, 1, 1, 0, 1, 1, 1, 1], "wpebackend-fdo": [1, 1, 1, 1, 1, 1, 1, 1], "wtdbg2": [1, 1, 1, 0, 1, 1, 1, 1], "wxPython": [1, 1, 1, 1, 1, 1, 1, 1], "wxWidgets": [1, 1, 1, 1, 1, 1, 1, 1], "x264": [1, 1, 1, 1, 1, 1, 1, 1], "x265": [1, 1, 1, 1, 1, 1, 1, 1], "xESMF": [0, 1, 1, 0, 1, 1, 1, 1], "xarray": [1, 1, 1, 1, 1, 1, 1, 1], "xorg-macros": [1, 1, 1, 1, 1, 1, 1, 1], "xprop": [0, 1, 1, 1, 1, 1, 1, 1], "xproto": [0, 1, 1, 0, 1, 1, 1, 1], "xxd": [1, 1, 1, 1, 1, 1, 1, 1], "yaff": [1, 1, 1, 1, 1, 1, 1, 1], "yaml-cpp": [1, 1, 1, 0, 1, 1, 1, 1], "zarr": [1, 1, 1, 1, 1, 1, 1, 1], "zfp": [1, 1, 1, 1, 1, 1, 1, 1], "zlib": [1, 1, 1, 1, 1, 1, 1, 1], "zlib-ng": [1, 1, 1, 1, 1, 1, 1, 1], "zstd": [1, 1, 1, 1, 1, 1, 1, 1]}, "time_generated": "Fri, 01 Sep 2023 at 08:52:14 CEST"} \ No newline at end of file +{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "modules": {"ABAQUS": [1, 1, 1, 1, 1, 1], "ABINIT": [0, 1, 1, 1, 1, 1], "ABRA2": [0, 1, 1, 1, 1, 1], "ABRicate": [0, 1, 1, 0, 1, 1], "ABySS": [1, 1, 1, 1, 1, 1], "ACTC": [0, 1, 1, 1, 1, 1], "ADMIXTURE": [0, 1, 1, 0, 1, 1], "AICSImageIO": [1, 1, 1, 1, 1, 1], "AMAPVox": [1, 1, 1, 0, 1, 1], "AMICA": [1, 1, 1, 1, 1, 1], "AMOS": [1, 1, 1, 1, 1, 1], "AMPtk": [1, 1, 1, 0, 1, 1], "ANTLR": [0, 1, 1, 0, 1, 1], "ANTs": [0, 1, 1, 0, 1, 1], "APR": [1, 1, 1, 0, 1, 1], "APR-util": [1, 1, 1, 0, 1, 1], "ARAGORN": [1, 1, 1, 0, 1, 1], "ASCAT": [1, 1, 1, 1, 1, 1], "ASE": [1, 1, 1, 1, 1, 1], "ATK": [1, 1, 1, 1, 1, 1], "AUGUSTUS": [1, 1, 1, 1, 1, 1], "Abseil": [1, 1, 1, 1, 1, 1], "AdapterRemoval": [1, 1, 1, 0, 1, 1], "Albumentations": [1, 1, 1, 0, 1, 1], "AlphaFold": [1, 1, 1, 1, 1, 1], "AlphaPulldown": [1, 1, 1, 1, 1, 1], "Altair-EDEM": [0, 1, 1, 0, 1, 0], "Amber": [1, 0, 0, 0, 1, 0], "AmberMini": [0, 1, 1, 0, 1, 1], "AmberTools": [0, 1, 1, 0, 1, 1], "Anaconda3": [1, 1, 1, 1, 1, 1], "Annocript": [1, 1, 1, 1, 1, 1], "ArchR": [1, 1, 1, 1, 1, 1], "Archive-Zip": [1, 1, 1, 1, 1, 1], "Arlequin": [0, 1, 1, 0, 1, 1], "Armadillo": [1, 1, 1, 1, 1, 1], "Arrow": [1, 1, 1, 1, 1, 1], "ArviZ": [1, 1, 1, 1, 1, 1], "Aspera-CLI": [0, 1, 1, 0, 1, 0], "AutoDock-Vina": [1, 1, 1, 0, 1, 1], "AutoGeneS": [0, 1, 1, 1, 1, 1], "AutoMap": [0, 1, 1, 0, 1, 1], "Autoconf": [1, 1, 1, 1, 1, 1], "Automake": [1, 1, 1, 1, 1, 1], "Autotools": [1, 1, 1, 1, 1, 1], "Avogadro2": [1, 1, 1, 0, 1, 1], "BAMSurgeon": [0, 1, 1, 0, 1, 0], "BBMap": [1, 1, 1, 1, 1, 1], "BCFtools": [1, 1, 1, 1, 1, 1], "BDBag": [1, 1, 1, 0, 1, 1], "BEDOPS": [1, 1, 1, 1, 1, 1], "BEDTools": [1, 1, 1, 1, 1, 1], "BLAST+": [1, 1, 1, 1, 1, 1], "BLAT": [1, 1, 1, 1, 1, 1], "BLIS": [1, 1, 1, 1, 1, 1], "BRAKER": [1, 1, 1, 1, 1, 1], "BSMAPz": [0, 1, 1, 0, 1, 1], "BSseeker2": [0, 1, 0, 0, 0, 0], "BUSCO": [1, 1, 1, 1, 1, 1], "BUStools": [1, 1, 1, 1, 1, 1], "BWA": [1, 1, 1, 1, 1, 1], "BamTools": [1, 1, 1, 1, 1, 1], "Bambi": [1, 1, 1, 0, 1, 1], "Bandage": [1, 1, 1, 1, 1, 1], "BatMeth2": [0, 1, 1, 0, 1, 1], "BayeScEnv": [0, 1, 1, 0, 1, 0], "BayeScan": [0, 1, 1, 0, 1, 1], "BayesAss3-SNPs": [1, 1, 1, 0, 1, 1], "BayesPrism": [1, 1, 1, 1, 1, 1], "Bazel": [1, 1, 1, 1, 1, 1], "Beast": [1, 1, 1, 1, 1, 1], "BeautifulSoup": [1, 1, 1, 1, 1, 1], "BerkeleyGW": [0, 1, 1, 0, 1, 1], "BiG-SCAPE": [0, 1, 1, 0, 1, 1], "BigDFT": [1, 1, 1, 0, 1, 1], "BinSanity": [0, 1, 1, 0, 1, 1], "Bio-DB-HTS": [1, 1, 1, 0, 1, 1], "Bio-EUtilities": [0, 1, 1, 0, 1, 1], "Bio-SearchIO-hmmer": [0, 1, 1, 1, 1, 1], "BioPerl": [1, 1, 1, 1, 1, 1], "Biopython": [1, 1, 1, 1, 1, 1], "Bismark": [1, 1, 1, 0, 1, 1], "Bison": [1, 1, 1, 1, 1, 1], "Blender": [1, 1, 1, 1, 1, 1], "Block": [1, 1, 1, 1, 1, 1], "Blosc": [1, 1, 1, 1, 1, 1], "Blosc2": [1, 1, 1, 1, 1, 1], "Bonito": [0, 1, 0, 0, 1, 1], "Bonnie++": [0, 1, 0, 0, 0, 0], "Boost": [1, 1, 1, 1, 1, 1], "Boost.MPI": [1, 1, 1, 1, 1, 1], "Boost.Python": [1, 1, 1, 1, 1, 1], "Boost.Python-NumPy": [0, 0, 1, 0, 1, 0], "Bottleneck": [0, 1, 1, 0, 1, 1], "Bowtie": [1, 1, 1, 1, 1, 1], "Bowtie2": [1, 1, 1, 1, 1, 1], "Bracken": [1, 1, 1, 1, 1, 1], "Brotli": [1, 1, 1, 1, 1, 1], "Brotli-python": [1, 1, 1, 1, 1, 1], "Brunsli": [1, 1, 1, 1, 1, 1], "CASPR": [1, 1, 1, 1, 1, 1], "CCL": [1, 1, 1, 0, 1, 1], "CD-HIT": [1, 1, 1, 1, 1, 1], "CDAT": [0, 1, 1, 0, 1, 1], "CDBtools": [1, 1, 1, 0, 1, 1], "CDO": [1, 1, 1, 1, 1, 1], "CENSO": [1, 1, 1, 1, 1, 1], "CESM-deps": [1, 1, 1, 0, 1, 1], "CFDEMcoupling": [0, 1, 1, 0, 1, 1], "CFITSIO": [1, 1, 1, 1, 1, 1], "CGAL": [1, 1, 1, 1, 1, 1], "CGmapTools": [0, 1, 1, 0, 1, 1], "CIRCexplorer2": [1, 1, 1, 1, 1, 1], "CIRI-long": [0, 1, 1, 1, 1, 1], "CIRIquant": [1, 1, 1, 1, 1, 1], "CITE-seq-Count": [0, 1, 1, 0, 1, 1], "CLEAR": [1, 1, 1, 1, 1, 1], "CLHEP": [1, 1, 1, 1, 1, 1], "CMAverse": [1, 1, 1, 0, 1, 1], "CMSeq": [1, 1, 1, 1, 1, 1], "CMake": [1, 1, 1, 1, 1, 1], "COLMAP": [1, 1, 1, 1, 1, 1], "CONCOCT": [0, 1, 1, 1, 1, 1], "CP2K": [1, 1, 1, 1, 1, 1], "CPC2": [1, 1, 1, 1, 1, 1], "CPLEX": [1, 1, 1, 1, 1, 1], "CPPE": [1, 1, 1, 1, 1, 1], "CREST": [1, 1, 1, 1, 1, 1], "CRISPR-DAV": [0, 1, 1, 1, 1, 0], "CRISPResso2": [0, 1, 1, 1, 1, 1], "CRYSTAL17": [0, 1, 1, 0, 1, 1], "CSBDeep": [1, 1, 1, 1, 1, 1], "CUDA": [1, 1, 1, 1, 1, 1], "CUDAcore": [1, 1, 1, 1, 1, 1], "CUnit": [1, 1, 1, 1, 1, 1], "CVXOPT": [1, 1, 1, 1, 1, 1], "Calib": [0, 1, 1, 0, 1, 0], "Cantera": [1, 1, 1, 1, 1, 1], "CapnProto": [1, 1, 1, 1, 1, 1], "Cartopy": [1, 1, 1, 1, 1, 1], "Casanovo": [1, 1, 1, 1, 1, 1], "CatBoost": [1, 1, 1, 1, 1, 1], "CatLearn": [1, 1, 1, 1, 1, 1], "CatMAP": [1, 1, 1, 1, 1, 1], "Catch2": [1, 1, 1, 1, 1, 1], "Cbc": [1, 1, 1, 1, 1, 1], "CellBender": [1, 1, 1, 1, 1, 1], "CellOracle": [1, 1, 1, 1, 1, 1], "CellProfiler": [1, 1, 1, 0, 1, 1], "CellRanger": [0, 1, 1, 1, 1, 1], "CellRanger-ATAC": [1, 1, 1, 1, 1, 1], "CellRank": [1, 1, 1, 1, 1, 1], "CellTypist": [1, 1, 1, 1, 1, 1], "Cellpose": [1, 0, 1, 1, 1, 1], "Centrifuge": [0, 1, 1, 0, 1, 1], "Cereal": [1, 1, 1, 1, 1, 1], "Ceres-Solver": [1, 1, 1, 1, 1, 1], "Cgl": [1, 1, 1, 1, 1, 1], "CharLS": [1, 1, 1, 1, 1, 1], "CheMPS2": [1, 1, 1, 1, 1, 1], "Check": [1, 1, 1, 1, 1, 1], "CheckM": [1, 1, 1, 1, 1, 1], "Chimera": [1, 1, 1, 0, 1, 1], "Circlator": [1, 1, 1, 1, 1, 1], "Circuitscape": [1, 1, 1, 1, 1, 1], "Clair3": [1, 1, 1, 1, 1, 1], "Clang": [1, 1, 1, 1, 1, 1], "Clp": [1, 1, 1, 1, 1, 1], "Clustal-Omega": [1, 1, 1, 0, 1, 1], "ClustalW2": [0, 1, 1, 0, 1, 1], "CmdStanR": [1, 1, 1, 1, 1, 1], "CodAn": [1, 1, 1, 1, 1, 1], "CoinUtils": [1, 1, 1, 1, 1, 1], "ColabFold": [1, 0, 1, 0, 1, 0], "CompareM": [1, 1, 1, 0, 1, 1], "Compress-Raw-Zlib": [1, 1, 1, 1, 1, 1], "Concorde": [1, 1, 1, 1, 1, 1], "CoordgenLibs": [1, 1, 1, 1, 1, 1], "CopyKAT": [1, 1, 1, 1, 1, 1], "Coreutils": [0, 1, 1, 0, 1, 1], "CppUnit": [0, 1, 1, 0, 1, 1], "CuPy": [0, 0, 0, 0, 1, 0], "Cufflinks": [1, 1, 1, 1, 1, 1], "Cython": [1, 1, 1, 1, 1, 1], "DALI": [1, 1, 1, 1, 1, 1], "DAS_Tool": [1, 1, 1, 1, 1, 1], "DB": [1, 1, 1, 1, 1, 1], "DBD-mysql": [1, 1, 1, 1, 1, 1], "DBG2OLC": [1, 1, 1, 1, 1, 1], "DB_File": [1, 1, 1, 1, 1, 1], "DBus": [1, 1, 1, 1, 1, 1], "DETONATE": [1, 1, 1, 1, 1, 1], "DFT-D3": [0, 1, 1, 1, 1, 1], "DIA-NN": [1, 1, 1, 0, 1, 1], "DIALOGUE": [1, 1, 1, 1, 1, 1], "DIAMOND": [1, 1, 1, 1, 1, 1], "DIANA": [0, 1, 1, 0, 1, 0], "DIRAC": [0, 1, 1, 0, 1, 1], "DL_POLY_Classic": [0, 1, 1, 0, 1, 1], "DMCfun": [0, 1, 1, 0, 1, 1], "DOLFIN": [0, 1, 1, 0, 1, 0], "DRAGMAP": [1, 1, 1, 0, 1, 1], "DROP": [0, 1, 1, 1, 1, 1], "DUBStepR": [1, 1, 1, 0, 1, 1], "Dakota": [1, 1, 1, 0, 1, 1], "Dalton": [0, 1, 1, 0, 1, 1], "DeepLoc": [1, 1, 1, 1, 1, 1], "Delly": [0, 1, 1, 1, 1, 1], "DendroPy": [1, 1, 1, 1, 1, 1], "DensPart": [1, 1, 1, 1, 1, 1], "Deprecated": [1, 1, 1, 1, 1, 1], "DiCE-ML": [1, 1, 1, 1, 1, 1], "Dice": [1, 1, 1, 1, 1, 1], "DoubletFinder": [1, 1, 1, 1, 1, 1], "Doxygen": [1, 1, 1, 1, 1, 1], "Dsuite": [0, 1, 1, 0, 1, 1], "DualSPHysics": [1, 0, 0, 0, 1, 0], "DyMat": [1, 1, 1, 0, 1, 1], "EDirect": [1, 1, 1, 1, 1, 1], "ELPA": [1, 1, 1, 1, 1, 1], "EMBOSS": [1, 1, 1, 0, 1, 1], "ESM-2": [1, 1, 1, 1, 1, 1], "ESMF": [1, 1, 1, 1, 1, 1], "ESMPy": [0, 1, 1, 0, 1, 1], "ETE": [1, 1, 1, 1, 1, 1], "EUKulele": [1, 1, 1, 1, 1, 1], "EasyBuild": [1, 1, 1, 1, 1, 1], "Eigen": [1, 1, 1, 1, 1, 1], "Elk": [0, 1, 1, 1, 1, 1], "EpiSCORE": [1, 1, 1, 1, 1, 1], "Excel-Writer-XLSX": [0, 1, 1, 1, 1, 1], "Exonerate": [1, 1, 1, 1, 1, 1], "ExtremeLy": [1, 1, 1, 1, 1, 1], "FALCON": [0, 1, 1, 0, 1, 1], "FASTA": [1, 1, 1, 1, 1, 1], "FASTX-Toolkit": [1, 1, 1, 1, 1, 1], "FDS": [1, 1, 1, 1, 1, 1], "FEniCS": [0, 1, 1, 0, 1, 0], "FFAVES": [1, 1, 1, 1, 1, 1], "FFC": [0, 1, 1, 0, 1, 1], "FFTW": [1, 1, 1, 1, 1, 1], "FFTW.MPI": [1, 1, 1, 1, 1, 1], "FFmpeg": [1, 1, 1, 1, 1, 1], "FIAT": [0, 1, 1, 0, 1, 1], "FIGARO": [0, 0, 1, 0, 1, 1], "FLAC": [1, 1, 1, 1, 1, 1], "FLAIR": [0, 1, 1, 0, 1, 0], "FLANN": [1, 1, 1, 1, 1, 1], "FLASH": [1, 1, 1, 1, 1, 1], "FLTK": [0, 1, 1, 1, 1, 1], "FLUENT": [1, 1, 1, 1, 1, 1], "FMM3D": [0, 1, 1, 1, 1, 1], "FMPy": [0, 1, 1, 0, 1, 1], "FSL": [1, 1, 1, 1, 1, 1], "FabIO": [0, 1, 1, 1, 1, 1], "Faiss": [1, 0, 0, 0, 1, 0], "FastANI": [1, 1, 1, 1, 1, 1], "FastME": [1, 1, 1, 1, 1, 1], "FastQC": [1, 1, 1, 1, 1, 1], "FastQ_Screen": [1, 1, 1, 1, 1, 1], "FastTree": [1, 1, 1, 1, 1, 1], "FastViromeExplorer": [0, 1, 1, 0, 1, 1], "Fastaq": [1, 1, 1, 1, 1, 1], "Fiji": [1, 1, 1, 0, 1, 1], "Filtlong": [0, 1, 1, 1, 1, 1], "Fiona": [1, 1, 1, 1, 1, 1], "Flask": [1, 1, 1, 1, 1, 1], "FlexiBLAS": [1, 1, 1, 1, 1, 1], "Flye": [1, 1, 1, 1, 1, 1], "FragGeneScan": [1, 1, 1, 1, 1, 1], "FreeBarcodes": [1, 1, 1, 0, 1, 1], "FreeFEM": [0, 1, 1, 0, 1, 1], "FreeImage": [1, 1, 1, 1, 1, 1], "FreeSurfer": [1, 1, 1, 0, 1, 1], "FreeXL": [1, 1, 1, 1, 1, 1], "FriBidi": [1, 1, 1, 1, 1, 1], "FuSeq": [0, 1, 1, 0, 1, 1], "FusionCatcher": [0, 1, 1, 0, 1, 1], "GAPPadder": [1, 1, 1, 1, 1, 1], "GATB-Core": [1, 1, 1, 1, 1, 1], "GATE": [1, 1, 1, 1, 1, 1], "GATK": [1, 1, 1, 1, 1, 1], "GBprocesS": [1, 1, 1, 1, 1, 1], "GCC": [1, 1, 1, 1, 1, 1], "GCCcore": [1, 1, 1, 1, 1, 1], "GConf": [1, 1, 1, 1, 1, 1], "GDAL": [1, 1, 1, 1, 1, 1], "GDB": [0, 1, 1, 0, 1, 1], "GDCM": [1, 1, 1, 1, 1, 1], "GDGraph": [1, 1, 1, 1, 1, 1], "GDRCopy": [1, 1, 1, 1, 1, 1], "GEGL": [0, 1, 1, 0, 1, 1], "GEOS": [1, 1, 1, 1, 1, 1], "GFF3-toolkit": [1, 1, 1, 1, 1, 1], "GIMP": [0, 1, 1, 0, 1, 0], "GL2PS": [1, 1, 1, 1, 1, 1], "GLFW": [1, 1, 1, 1, 1, 1], "GLIMPSE": [1, 1, 1, 1, 1, 1], "GLM": [1, 1, 1, 1, 1, 1], "GLPK": [1, 1, 1, 1, 1, 1], "GLib": [1, 1, 1, 1, 1, 1], "GLibmm": [0, 1, 1, 0, 1, 1], "GMAP-GSNAP": [1, 1, 1, 1, 1, 1], "GMP": [1, 1, 1, 1, 1, 1], "GOATOOLS": [1, 1, 1, 1, 1, 1], "GObject-Introspection": [1, 1, 1, 1, 1, 1], "GPAW": [1, 1, 1, 1, 1, 1], "GPAW-setups": [1, 1, 1, 1, 1, 1], "GPy": [1, 1, 1, 0, 1, 1], "GPyOpt": [0, 1, 1, 0, 1, 1], "GPyTorch": [1, 1, 1, 1, 1, 1], "GRASP-suite": [1, 1, 1, 1, 1, 1], "GRASS": [1, 1, 1, 1, 1, 1], "GROMACS": [1, 1, 1, 1, 1, 1], "GSL": [1, 1, 1, 1, 1, 1], "GST-plugins-bad": [1, 1, 1, 1, 1, 1], "GST-plugins-base": [1, 1, 1, 1, 1, 1], "GStreamer": [1, 1, 1, 1, 1, 1], "GTDB-Tk": [1, 1, 1, 1, 1, 1], "GTK+": [1, 1, 1, 1, 1, 1], "GTK2": [1, 1, 1, 1, 1, 1], "GTK3": [1, 1, 1, 1, 1, 1], "GTK4": [1, 1, 1, 1, 1, 1], "GTS": [1, 1, 1, 1, 1, 1], "GUSHR": [1, 1, 1, 1, 1, 1], "GapFiller": [1, 1, 1, 1, 1, 1], "Gaussian": [1, 1, 1, 1, 1, 1], "Gblocks": [1, 1, 1, 1, 1, 1], "Gdk-Pixbuf": [1, 1, 1, 1, 1, 1], "Geant4": [1, 1, 1, 1, 1, 1], "GeneMark-ET": [1, 1, 1, 1, 1, 1], "GenomeThreader": [1, 1, 1, 1, 1, 1], "GenomeWorks": [0, 0, 0, 0, 1, 0], "Gerris": [1, 1, 1, 1, 1, 1], "GetOrganelle": [1, 1, 1, 1, 1, 1], "GffCompare": [1, 1, 1, 1, 1, 1], "Ghostscript": [1, 1, 1, 1, 1, 1], "GimmeMotifs": [1, 1, 1, 1, 1, 1], "Giotto-Suite": [1, 1, 1, 1, 1, 1], "GitPython": [1, 1, 1, 1, 1, 1], "GlimmerHMM": [0, 1, 1, 1, 1, 1], "GlobalArrays": [1, 1, 1, 1, 1, 1], "GnuTLS": [1, 1, 1, 1, 1, 1], "Go": [1, 1, 1, 1, 1, 1], "Gradle": [1, 1, 1, 1, 1, 1], "GraphMap": [0, 0, 1, 0, 1, 1], "GraphMap2": [0, 1, 1, 0, 1, 1], "Graphene": [1, 1, 1, 1, 1, 1], "GraphicsMagick": [0, 1, 1, 0, 1, 1], "Graphviz": [1, 1, 1, 1, 1, 1], "Greenlet": [1, 1, 1, 1, 1, 1], "GroIMP": [0, 1, 1, 0, 1, 1], "Guile": [1, 1, 1, 1, 1, 1], "Guppy": [1, 1, 1, 1, 1, 1], "Gurobi": [1, 1, 1, 1, 1, 1], "HAL": [0, 1, 1, 1, 1, 1], "HDBSCAN": [1, 1, 1, 1, 1, 1], "HDDM": [0, 1, 0, 0, 0, 1], "HDF": [1, 1, 1, 1, 1, 1], "HDF5": [1, 1, 1, 1, 1, 1], "HH-suite": [1, 1, 1, 1, 1, 1], "HISAT2": [1, 1, 1, 1, 1, 1], "HMMER": [1, 1, 1, 1, 1, 1], "HMMER2": [0, 1, 1, 1, 1, 1], "HPL": [1, 1, 1, 1, 1, 1], "HTSeq": [1, 1, 1, 1, 1, 1], "HTSlib": [1, 1, 1, 1, 1, 1], "HTSplotter": [1, 1, 1, 1, 1, 1], "Hadoop": [0, 1, 1, 0, 1, 1], "HarfBuzz": [1, 1, 1, 1, 1, 1], "HiCExplorer": [1, 1, 1, 1, 1, 1], "HiCMatrix": [1, 1, 1, 1, 1, 1], "HighFive": [1, 1, 1, 1, 1, 1], "Highway": [1, 1, 1, 1, 1, 1], "Horovod": [1, 0, 0, 0, 1, 0], "HyPo": [0, 1, 1, 0, 1, 0], "Hybpiper": [1, 1, 1, 1, 1, 1], "Hydra": [1, 1, 1, 0, 1, 1], "Hyperopt": [1, 1, 1, 1, 1, 1], "Hypre": [1, 1, 1, 1, 1, 1], "ICU": [1, 1, 1, 1, 1, 1], "IDBA-UD": [1, 1, 1, 1, 1, 1], "IGMPlot": [0, 1, 0, 0, 0, 0], "IGV": [0, 1, 1, 0, 1, 1], "IOR": [0, 1, 1, 0, 1, 1], "IPython": [1, 1, 1, 1, 1, 1], "IQ-TREE": [1, 1, 1, 1, 1, 1], "IRkernel": [0, 1, 1, 0, 1, 1], "ISA-L": [1, 1, 1, 1, 1, 1], "ITK": [1, 1, 1, 1, 1, 1], "ImageMagick": [1, 1, 1, 1, 1, 1], "Imath": [1, 1, 1, 1, 1, 1], "Inferelator": [1, 1, 1, 1, 1, 1], "Infernal": [1, 1, 1, 0, 1, 1], "InterProScan": [1, 1, 1, 1, 1, 1], "IonQuant": [1, 1, 1, 1, 1, 1], "IsoQuant": [1, 1, 1, 1, 1, 1], "IsoSeq": [1, 1, 1, 1, 1, 1], "JAGS": [1, 1, 1, 1, 1, 1], "JSON-GLib": [0, 1, 1, 0, 1, 1], "Jansson": [1, 1, 1, 1, 1, 1], "JasPer": [1, 1, 1, 1, 1, 1], "Java": [1, 1, 1, 1, 1, 1], "Jellyfish": [1, 1, 1, 1, 1, 1], "JsonCpp": [1, 1, 1, 1, 1, 1], "Judy": [1, 1, 1, 1, 1, 1], "Julia": [1, 1, 1, 1, 1, 1], "JupyterHub": [1, 1, 1, 1, 1, 1], "JupyterLab": [1, 1, 1, 1, 1, 1], "JupyterNotebook": [1, 1, 1, 1, 1, 1], "KMC": [1, 1, 1, 1, 1, 1], "KaHIP": [0, 0, 0, 1, 0, 0], "Kaleido": [0, 1, 1, 1, 1, 1], "Kalign": [1, 1, 1, 1, 1, 1], "Kent_tools": [1, 1, 1, 1, 1, 1], "Keras": [1, 1, 1, 1, 1, 1], "KerasTuner": [1, 1, 1, 1, 1, 1], "Kraken": [0, 1, 1, 1, 1, 1], "Kraken2": [0, 1, 1, 1, 1, 1], "KrakenUniq": [1, 1, 1, 1, 1, 1], "KronaTools": [1, 1, 1, 1, 1, 1], "LAME": [1, 1, 1, 1, 1, 1], "LAMMPS": [1, 1, 1, 0, 1, 1], "LAST": [0, 1, 1, 1, 1, 1], "LASTZ": [1, 1, 1, 1, 1, 1], "LDC": [1, 1, 1, 1, 1, 1], "LERC": [1, 1, 1, 1, 1, 1], "LIANA+": [1, 1, 1, 1, 0, 1], "LIBSVM": [1, 1, 1, 1, 1, 1], "LLVM": [1, 1, 1, 1, 1, 1], "LMDB": [1, 1, 1, 1, 1, 1], "LMfit": [0, 1, 1, 0, 1, 1], "LPJmL": [0, 1, 1, 1, 1, 1], "LPeg": [0, 1, 1, 0, 1, 1], "LSD2": [1, 1, 1, 1, 1, 1], "LUMPY": [0, 1, 1, 1, 1, 1], "LZO": [1, 1, 1, 1, 1, 1], "L_RNA_scaffolder": [1, 1, 1, 1, 1, 1], "Lace": [1, 1, 1, 1, 1, 1], "LevelDB": [1, 1, 1, 1, 1, 1], "Levenshtein": [1, 1, 1, 1, 1, 1], "LiBis": [0, 1, 1, 0, 1, 1], "LibLZF": [1, 1, 1, 1, 1, 1], "LibSoup": [1, 1, 1, 1, 1, 1], "LibTIFF": [1, 1, 1, 1, 1, 1], "Libint": [1, 1, 1, 1, 1, 1], "Lighter": [1, 1, 1, 0, 1, 1], "LittleCMS": [1, 1, 1, 1, 1, 1], "LncLOOM": [0, 1, 1, 1, 1, 1], "LoRDEC": [1, 1, 1, 1, 1, 1], "Longshot": [1, 1, 1, 1, 1, 1], "LtrDetector": [0, 1, 1, 0, 1, 1], "Lua": [1, 1, 1, 1, 1, 1], "M1QN3": [0, 1, 1, 0, 1, 0], "M4": [1, 1, 1, 1, 1, 1], "MACS2": [1, 1, 1, 0, 1, 1], "MACS3": [1, 1, 1, 1, 1, 1], "MAFFT": [1, 1, 1, 1, 1, 1], "MAGeCK": [1, 1, 1, 1, 1, 1], "MARS": [0, 1, 1, 0, 1, 1], "MATIO": [0, 1, 1, 0, 1, 1], "MATLAB": [1, 1, 1, 1, 1, 1], "MBROLA": [0, 1, 1, 0, 1, 1], "MCL": [1, 1, 1, 1, 1, 1], "MDAnalysis": [1, 1, 1, 1, 1, 1], "MDTraj": [1, 1, 1, 1, 1, 1], "MEGA": [0, 1, 1, 0, 1, 0], "MEGAHIT": [1, 1, 1, 1, 1, 1], "MEGAN": [1, 1, 1, 1, 1, 1], "MEM": [0, 1, 1, 0, 1, 0], "MEME": [1, 1, 1, 1, 1, 1], "MESS": [0, 1, 1, 0, 1, 1], "METIS": [1, 1, 1, 1, 1, 1], "MIGRATE-N": [1, 1, 1, 0, 1, 1], "MMseqs2": [1, 1, 1, 1, 1, 1], "MOABS": [0, 1, 1, 0, 1, 1], "MONAI": [1, 1, 1, 1, 1, 1], "MOOSE": [1, 1, 1, 0, 1, 1], "MPC": [1, 1, 1, 1, 1, 1], "MPFR": [1, 1, 1, 1, 1, 1], "MRtrix": [1, 1, 1, 1, 1, 1], "MSFragger": [1, 1, 1, 1, 1, 1], "MUMPS": [1, 1, 1, 1, 1, 1], "MUMmer": [1, 1, 1, 1, 1, 1], "MUSCLE": [1, 1, 1, 1, 1, 1], "MXNet": [1, 1, 1, 1, 1, 1], "MaSuRCA": [1, 1, 1, 1, 1, 1], "Mako": [1, 1, 1, 1, 1, 1], "MariaDB": [1, 1, 1, 1, 1, 1], "MariaDB-connector-c": [0, 1, 1, 0, 1, 1], "Mash": [1, 1, 1, 1, 1, 1], "Maven": [1, 1, 1, 1, 1, 1], "MaxBin": [1, 1, 1, 1, 1, 1], "MedPy": [1, 1, 1, 1, 1, 1], "Megalodon": [1, 1, 1, 1, 1, 1], "Mercurial": [1, 1, 1, 0, 1, 1], "Mesa": [1, 1, 1, 1, 1, 1], "Meson": [1, 1, 1, 1, 1, 1], "Mesquite": [0, 1, 1, 0, 1, 1], "MetaBAT": [1, 1, 1, 1, 1, 1], "MetaEuk": [1, 1, 1, 1, 1, 1], "MetaPhlAn": [1, 1, 1, 1, 1, 1], "Metagenome-Atlas": [0, 1, 1, 0, 1, 1], "MethylDackel": [0, 1, 1, 0, 1, 0], "MiXCR": [1, 1, 1, 1, 1, 1], "MicrobeAnnotator": [0, 1, 1, 0, 1, 1], "Mikado": [1, 1, 1, 1, 1, 1], "MinCED": [0, 1, 1, 0, 1, 1], "MinPath": [1, 1, 1, 0, 1, 1], "Miniconda3": [1, 1, 1, 1, 1, 1], "Minipolish": [1, 1, 1, 0, 1, 1], "MitoHiFi": [1, 1, 1, 1, 1, 1], "ModelTest-NG": [1, 1, 1, 0, 1, 1], "Molden": [0, 1, 1, 0, 1, 1], "Molekel": [1, 1, 1, 0, 1, 1], "Mono": [0, 1, 0, 0, 0, 1], "Monocle3": [1, 1, 1, 1, 1, 1], "MrBayes": [0, 1, 1, 1, 1, 1], "MuJoCo": [1, 1, 1, 1, 1, 1], "MultiQC": [1, 1, 1, 1, 1, 1], "MultilevelEstimators": [1, 1, 1, 0, 1, 1], "Multiwfn": [0, 1, 1, 0, 1, 1], "MyCC": [0, 1, 1, 0, 1, 1], "Myokit": [0, 1, 1, 1, 1, 1], "NAMD": [1, 1, 1, 1, 1, 1], "NASM": [1, 1, 1, 1, 1, 1], "NCCL": [1, 0, 1, 0, 1, 1], "NCL": [0, 0, 1, 0, 1, 1], "NCO": [0, 1, 1, 0, 1, 1], "NECI": [1, 1, 1, 1, 1, 1], "NEURON": [1, 1, 1, 0, 1, 1], "NGS": [1, 1, 1, 1, 1, 1], "NGSpeciesID": [1, 1, 1, 0, 1, 1], "NLMpy": [0, 1, 0, 0, 0, 1], "NLTK": [1, 1, 1, 1, 1, 1], "NLopt": [1, 1, 1, 1, 1, 1], "NOVOPlasty": [0, 1, 0, 0, 0, 1], "NSPR": [1, 1, 1, 1, 1, 1], "NSS": [1, 1, 1, 1, 1, 1], "NVHPC": [1, 0, 1, 0, 1, 0], "NanoCaller": [1, 1, 1, 1, 1, 1], "NanoComp": [0, 1, 1, 0, 1, 1], "NanoFilt": [0, 1, 1, 0, 1, 1], "NanoPlot": [0, 1, 1, 0, 1, 1], "NanoStat": [1, 1, 1, 1, 1, 1], "NanopolishComp": [0, 1, 1, 0, 1, 1], "NetPyNE": [1, 1, 1, 0, 1, 1], "NewHybrids": [0, 1, 1, 0, 1, 0], "NextGenMap": [1, 1, 1, 0, 1, 1], "Nextflow": [1, 1, 1, 1, 1, 1], "NiBabel": [1, 1, 1, 1, 1, 1], "Nim": [1, 1, 1, 0, 1, 1], "Ninja": [1, 1, 1, 1, 1, 1], "Nipype": [1, 1, 1, 0, 1, 1], "OBITools3": [1, 1, 1, 1, 1, 1], "ONNX": [1, 1, 1, 1, 1, 1], "ONNX-Runtime": [1, 1, 1, 1, 1, 1], "OPERA-MS": [0, 1, 1, 0, 1, 1], "ORCA": [1, 1, 1, 1, 1, 1], "OSU-Micro-Benchmarks": [1, 1, 1, 1, 1, 1], "Oases": [1, 1, 1, 1, 1, 1], "Omnipose": [1, 1, 1, 1, 1, 1], "OpenAI-Gym": [0, 1, 1, 0, 1, 1], "OpenBLAS": [1, 1, 1, 1, 1, 1], "OpenBabel": [1, 1, 1, 1, 1, 1], "OpenCV": [1, 1, 1, 1, 1, 1], "OpenCoarrays": [0, 1, 1, 0, 1, 1], "OpenEXR": [1, 1, 1, 1, 1, 1], "OpenFOAM": [1, 1, 1, 1, 1, 1], "OpenFOAM-Extend": [0, 1, 1, 0, 1, 1], "OpenFace": [0, 1, 1, 0, 1, 1], "OpenFold": [1, 0, 1, 0, 1, 0], "OpenForceField": [0, 1, 1, 0, 1, 1], "OpenImageIO": [0, 1, 1, 0, 1, 1], "OpenJPEG": [1, 1, 1, 1, 1, 1], "OpenMM": [1, 1, 1, 1, 1, 1], "OpenMM-PLUMED": [0, 1, 1, 0, 1, 1], "OpenMMTools": [0, 1, 1, 0, 1, 1], "OpenMPI": [1, 1, 1, 1, 1, 1], "OpenMolcas": [1, 1, 1, 1, 1, 1], "OpenPGM": [1, 1, 1, 1, 1, 1], "OpenPIV": [0, 1, 1, 0, 1, 1], "OpenSSL": [1, 1, 1, 1, 1, 1], "OpenSees": [0, 1, 1, 0, 1, 1], "OpenSlide": [1, 1, 1, 1, 1, 1], "OpenSlide-Java": [1, 1, 1, 1, 1, 1], "Optuna": [1, 1, 1, 1, 1, 1], "OrthoFinder": [1, 1, 1, 1, 1, 1], "Osi": [1, 1, 1, 1, 1, 1], "PASA": [1, 1, 1, 1, 1, 1], "PBGZIP": [1, 1, 1, 0, 1, 1], "PCRE": [1, 1, 1, 1, 1, 1], "PCRE2": [1, 1, 1, 1, 1, 1], "PEAR": [1, 1, 1, 1, 1, 1], "PETSc": [1, 1, 1, 1, 1, 1], "PHYLIP": [1, 1, 1, 1, 1, 1], "PICRUSt2": [1, 1, 1, 1, 1, 1], "PLAMS": [1, 1, 1, 1, 1, 1], "PLINK": [1, 1, 1, 0, 1, 1], "PLUMED": [1, 1, 1, 1, 1, 1], "PLY": [0, 1, 1, 0, 1, 1], "PMIx": [1, 1, 1, 1, 1, 1], "POT": [1, 1, 1, 1, 1, 1], "POV-Ray": [0, 1, 1, 1, 1, 1], "PPanGGOLiN": [1, 1, 1, 0, 1, 1], "PRANK": [0, 1, 1, 1, 1, 1], "PRINSEQ": [1, 1, 1, 1, 1, 1], "PRISMS-PF": [0, 1, 1, 0, 1, 1], "PROJ": [1, 1, 1, 1, 1, 1], "Pandoc": [0, 1, 1, 1, 1, 1], "Pango": [1, 1, 1, 1, 1, 1], "ParMETIS": [1, 1, 1, 1, 1, 1], "ParMGridGen": [0, 1, 1, 0, 1, 1], "ParaView": [1, 1, 1, 1, 1, 1], "ParmEd": [0, 1, 1, 0, 1, 1], "Parsl": [1, 1, 1, 1, 1, 1], "PartitionFinder": [0, 1, 0, 0, 0, 1], "Perl": [1, 1, 1, 1, 1, 1], "Perl-bundle-CPAN": [1, 1, 1, 1, 1, 1], "Phenoflow": [1, 1, 1, 1, 1, 1], "PhyloPhlAn": [1, 1, 1, 1, 1, 1], "Pillow": [1, 1, 1, 1, 1, 1], "Pillow-SIMD": [1, 1, 1, 1, 1, 1], "Pilon": [1, 1, 1, 1, 1, 1], "Pint": [1, 1, 1, 1, 1, 1], "PnetCDF": [1, 1, 1, 0, 1, 1], "Porechop": [0, 1, 1, 0, 1, 1], "PostgreSQL": [1, 1, 1, 1, 1, 1], "Primer3": [0, 1, 1, 0, 1, 0], "ProBiS": [1, 1, 1, 1, 1, 1], "ProtHint": [1, 1, 1, 1, 1, 1], "PsiCLASS": [1, 1, 1, 1, 1, 1], "PuLP": [1, 1, 1, 1, 1, 1], "PyBerny": [1, 1, 1, 1, 1, 1], "PyCairo": [1, 1, 1, 1, 1, 1], "PyCalib": [1, 1, 1, 1, 1, 1], "PyCheMPS2": [1, 1, 1, 1, 1, 1], "PyFoam": [0, 1, 1, 1, 1, 1], "PyGEOS": [0, 1, 1, 0, 1, 1], "PyGObject": [1, 1, 1, 1, 1, 1], "PyInstaller": [1, 1, 1, 1, 1, 1], "PyKeOps": [1, 0, 0, 0, 1, 0], "PyMC": [1, 1, 1, 1, 1, 1], "PyMC3": [1, 1, 1, 0, 1, 1], "PyMDE": [1, 1, 1, 1, 1, 1], "PyMOL": [1, 1, 1, 1, 1, 1], "PyOD": [0, 1, 1, 1, 1, 1], "PyOpenCL": [1, 1, 1, 1, 1, 1], "PyOpenGL": [1, 1, 1, 1, 1, 1], "PyPy": [1, 1, 1, 1, 1, 1], "PyQt5": [1, 1, 1, 1, 1, 1], "PyQtGraph": [1, 1, 1, 1, 1, 1], "PyRETIS": [0, 1, 1, 1, 1, 1], "PyRe": [0, 1, 0, 0, 0, 1], "PySCF": [1, 1, 1, 1, 1, 1], "PyStan": [0, 1, 1, 0, 1, 1], "PyTables": [1, 1, 1, 1, 1, 1], "PyTensor": [1, 1, 1, 1, 1, 1], "PyTorch": [1, 1, 1, 1, 1, 1], "PyTorch-Geometric": [0, 1, 1, 0, 1, 1], "PyTorch-Ignite": [1, 0, 0, 0, 1, 0], "PyTorch-Lightning": [1, 1, 1, 1, 1, 1], "PyVCF": [0, 1, 1, 0, 1, 0], "PyVCF3": [1, 1, 1, 1, 1, 1], "PyWBGT": [1, 1, 1, 1, 1, 1], "PyWavelets": [0, 1, 1, 0, 1, 1], "PyYAML": [1, 1, 1, 1, 1, 1], "PyZMQ": [1, 1, 1, 1, 1, 1], "PycURL": [1, 1, 1, 1, 1, 1], "Pychopper": [0, 0, 1, 0, 1, 1], "Pyomo": [1, 1, 1, 0, 1, 1], "Pysam": [1, 1, 1, 1, 1, 1], "Python": [1, 1, 1, 1, 1, 1], "Python-bundle-PyPI": [1, 1, 1, 1, 1, 1], "QCA": [1, 1, 1, 1, 1, 1], "QCxMS": [1, 1, 1, 1, 1, 1], "QD": [1, 0, 1, 0, 1, 0], "QGIS": [1, 1, 1, 1, 1, 1], "QIIME2": [1, 1, 1, 1, 1, 1], "QScintilla": [1, 1, 1, 1, 1, 1], "QUAST": [1, 1, 1, 1, 1, 1], "Qhull": [1, 1, 1, 1, 1, 1], "Qt5": [1, 1, 1, 1, 1, 1], "Qt5Webkit": [1, 1, 1, 1, 1, 1], "QtKeychain": [1, 1, 1, 1, 1, 1], "QtPy": [1, 1, 1, 1, 1, 1], "Qtconsole": [1, 1, 1, 1, 1, 1], "QuPath": [1, 1, 1, 1, 1, 1], "Qualimap": [0, 1, 1, 1, 1, 1], "QuantumESPRESSO": [1, 1, 1, 0, 1, 1], "QuickFF": [1, 1, 1, 1, 1, 1], "Qwt": [1, 1, 1, 1, 1, 1], "R": [1, 1, 1, 1, 1, 1], "R-INLA": [1, 1, 1, 1, 1, 1], "R-bundle-Bioconductor": [1, 1, 1, 1, 1, 1], "R-bundle-CRAN": [1, 1, 1, 1, 1, 1], "R2jags": [1, 1, 1, 1, 1, 1], "RASPA2": [0, 1, 1, 1, 1, 1], "RAxML": [1, 1, 1, 0, 1, 1], "RAxML-NG": [1, 1, 1, 1, 1, 1], "RDFlib": [1, 1, 1, 0, 1, 1], "RDKit": [1, 1, 1, 1, 1, 1], "RDP-Classifier": [1, 1, 1, 0, 1, 1], "RE2": [1, 1, 1, 1, 1, 1], "RLCard": [1, 1, 1, 0, 1, 1], "RMBlast": [1, 1, 1, 1, 1, 1], "RNA-Bloom": [1, 1, 1, 1, 1, 1], "ROOT": [1, 1, 1, 1, 1, 1], "RSEM": [1, 1, 1, 1, 1, 1], "RSeQC": [1, 1, 1, 0, 1, 1], "RStudio-Server": [1, 1, 1, 1, 1, 1], "RTG-Tools": [1, 1, 1, 1, 1, 1], "Racon": [1, 1, 1, 1, 1, 1], "RagTag": [0, 1, 1, 1, 1, 1], "Ragout": [0, 1, 1, 1, 1, 1], "RapidJSON": [1, 1, 1, 1, 1, 1], "Raven": [1, 1, 1, 1, 1, 1], "Ray": [0, 1, 0, 0, 0, 0], "Ray-project": [1, 1, 1, 0, 1, 1], "ReFrame": [1, 1, 1, 1, 1, 1], "Redis": [1, 1, 1, 1, 1, 1], "RegTools": [1, 1, 1, 1, 1, 1], "RepeatMasker": [1, 1, 1, 1, 1, 1], "ResistanceGA": [1, 1, 1, 0, 1, 1], "RevBayes": [1, 1, 1, 1, 1, 1], "Rgurobi": [1, 1, 1, 0, 1, 1], "RheoTool": [1, 1, 1, 0, 1, 1], "Rmath": [1, 1, 1, 1, 1, 1], "RnBeads": [0, 1, 1, 0, 1, 1], "Roary": [0, 1, 1, 0, 1, 1], "Ruby": [1, 1, 1, 1, 1, 1], "Rust": [1, 1, 1, 1, 1, 1], "SAMtools": [1, 1, 1, 1, 1, 1], "SBCL": [1, 1, 1, 0, 1, 1], "SCENIC": [0, 1, 1, 0, 1, 1], "SCGid": [1, 1, 1, 0, 1, 1], "SCOTCH": [1, 1, 1, 1, 1, 1], "SCons": [1, 1, 1, 1, 1, 1], "SCopeLoomR": [1, 1, 1, 1, 1, 1], "SDL2": [1, 1, 1, 1, 1, 1], "SDSL": [0, 1, 1, 0, 1, 1], "SEACells": [1, 1, 1, 1, 1, 1], "SECAPR": [0, 1, 1, 0, 1, 1], "SELFIES": [1, 1, 1, 0, 1, 1], "SEPP": [1, 1, 1, 1, 1, 1], "SHAP": [1, 1, 1, 1, 1, 1], "SISSO": [1, 1, 1, 0, 1, 1], "SISSO++": [1, 1, 1, 0, 1, 1], "SKESA": [1, 1, 1, 0, 1, 1], "SLATEC": [0, 1, 1, 0, 1, 1], "SLEPc": [1, 1, 1, 1, 1, 1], "SLiM": [0, 1, 1, 0, 1, 0], "SMAP": [1, 1, 1, 1, 1, 1], "SMC++": [1, 1, 1, 0, 1, 1], "SMV": [0, 1, 1, 0, 1, 1], "SNAP": [1, 1, 1, 1, 1, 1], "SNAP-ESA": [1, 1, 1, 1, 1, 1], "SNAP-ESA-python": [1, 1, 1, 1, 1, 1], "SOAPdenovo-Trans": [1, 1, 1, 1, 1, 1], "SPAdes": [1, 1, 1, 1, 1, 1], "SPM": [1, 1, 1, 0, 1, 1], "SPOTPY": [1, 1, 1, 0, 1, 1], "SQLite": [1, 1, 1, 1, 1, 1], "SRA-Toolkit": [1, 1, 1, 1, 1, 1], "SRPRISM": [0, 1, 1, 1, 1, 1], "SRST2": [0, 1, 1, 1, 1, 1], "SSPACE_Basic": [0, 1, 1, 0, 1, 0], "SSW": [0, 1, 1, 0, 1, 1], "STACEY": [0, 1, 1, 0, 1, 0], "STAR": [1, 1, 1, 1, 1, 1], "STREAM": [0, 1, 1, 0, 1, 1], "STRique": [1, 1, 1, 0, 1, 1], "SUNDIALS": [1, 1, 1, 1, 1, 1], "SUPPA": [1, 1, 1, 1, 1, 1], "SVIM": [1, 1, 1, 1, 1, 1], "SWIG": [1, 1, 1, 1, 1, 1], "Sabre": [1, 1, 1, 1, 1, 1], "Sailfish": [0, 1, 0, 0, 0, 1], "Salmon": [1, 1, 1, 1, 1, 1], "Sambamba": [1, 1, 1, 1, 1, 1], "Satsuma2": [1, 1, 1, 0, 1, 1], "ScaFaCoS": [1, 1, 1, 0, 1, 1], "ScaLAPACK": [1, 1, 1, 1, 1, 1], "SciPy-bundle": [1, 1, 1, 1, 1, 1], "Seaborn": [1, 1, 1, 1, 1, 1], "SemiBin": [1, 1, 1, 1, 1, 1], "Sentence-Transformers": [1, 1, 1, 1, 1, 1], "SentencePiece": [1, 1, 1, 1, 1, 1], "SeqAn": [1, 1, 1, 1, 1, 1], "SeqKit": [0, 1, 1, 0, 1, 1], "SeqLib": [0, 1, 1, 0, 1, 0], "Serf": [1, 1, 1, 0, 1, 1], "Seurat": [1, 1, 1, 1, 1, 1], "SeuratData": [0, 1, 1, 1, 1, 1], "SeuratDisk": [1, 1, 1, 0, 1, 1], "SeuratWrappers": [0, 1, 1, 1, 1, 1], "Shapely": [1, 1, 1, 1, 1, 1], "Shasta": [0, 1, 1, 1, 1, 1], "Short-Pair": [1, 1, 1, 0, 1, 1], "SiNVICT": [0, 1, 1, 0, 1, 1], "Sibelia": [0, 1, 1, 1, 1, 1], "SimNIBS": [0, 1, 1, 1, 1, 1], "SimPEG": [1, 1, 1, 0, 1, 1], "SimpleElastix": [0, 1, 1, 0, 1, 1], "SimpleITK": [1, 1, 1, 1, 1, 1], "SlamDunk": [1, 1, 1, 0, 1, 1], "Sniffles": [1, 1, 1, 1, 1, 1], "SoX": [1, 1, 1, 1, 1, 1], "Spark": [1, 1, 1, 1, 1, 1], "SpatialDE": [1, 1, 1, 1, 1, 1], "Spyder": [0, 1, 1, 0, 1, 1], "SqueezeMeta": [1, 1, 1, 0, 1, 1], "Squidpy": [1, 1, 1, 0, 1, 1], "Stacks": [0, 1, 1, 0, 1, 1], "Stata": [0, 1, 1, 1, 1, 1], "Statistics-R": [0, 1, 1, 0, 1, 1], "StringTie": [1, 1, 1, 1, 1, 1], "Structure": [0, 1, 0, 0, 0, 0], "Structure_threader": [1, 1, 1, 1, 1, 1], "SuAVE-biomat": [1, 1, 1, 1, 1, 1], "Subread": [0, 1, 1, 0, 1, 1], "Subversion": [1, 1, 1, 0, 1, 1], "SuiteSparse": [1, 1, 1, 1, 1, 1], "SuperLU": [0, 1, 1, 0, 1, 1], "SuperLU_DIST": [1, 1, 1, 1, 1, 1], "Szip": [1, 1, 1, 1, 1, 1], "TALON": [0, 1, 1, 1, 1, 1], "TAMkin": [1, 1, 1, 1, 1, 1], "TCLAP": [0, 1, 1, 0, 1, 1], "TELEMAC-MASCARET": [1, 1, 1, 0, 1, 1], "TEtranscripts": [0, 1, 1, 0, 1, 1], "TOBIAS": [1, 1, 1, 0, 1, 1], "TOPAS": [1, 1, 1, 1, 1, 1], "TRF": [1, 1, 1, 1, 1, 1], "TRUST4": [1, 1, 1, 0, 1, 1], "Tcl": [1, 1, 1, 1, 1, 1], "TensorFlow": [1, 1, 1, 1, 1, 1], "Theano": [1, 1, 1, 1, 1, 1], "Tk": [1, 1, 1, 1, 1, 1], "Tkinter": [1, 1, 1, 1, 1, 1], "Togl": [1, 1, 1, 0, 1, 1], "Tombo": [0, 1, 1, 0, 1, 1], "TopHat": [1, 1, 1, 1, 1, 1], "TransDecoder": [0, 1, 1, 0, 1, 1], "TranscriptClean": [0, 1, 1, 1, 1, 1], "Transformers": [1, 1, 1, 1, 1, 1], "TreeMix": [1, 1, 1, 0, 1, 1], "Trilinos": [0, 1, 1, 0, 1, 1], "Trim_Galore": [0, 1, 1, 1, 1, 1], "Trimmomatic": [1, 1, 1, 1, 1, 1], "Trinity": [1, 1, 1, 1, 1, 1], "Triton": [0, 0, 1, 0, 0, 0], "Trycycler": [0, 1, 1, 0, 1, 1], "TurboVNC": [1, 1, 1, 1, 1, 1], "UCC": [1, 1, 1, 1, 1, 1], "UCLUST": [0, 1, 1, 0, 1, 1], "UCX": [1, 1, 1, 1, 1, 1], "UCX-CUDA": [1, 0, 1, 0, 1, 0], "UDUNITS": [1, 1, 1, 1, 1, 1], "UFL": [0, 1, 1, 0, 1, 1], "UMI-tools": [0, 1, 1, 0, 1, 1], "UQTk": [0, 0, 1, 0, 1, 1], "USEARCH": [1, 1, 1, 1, 1, 1], "UnZip": [1, 1, 1, 1, 1, 1], "UniFrac": [1, 1, 1, 1, 1, 1], "Unicycler": [0, 1, 1, 0, 1, 1], "Unidecode": [1, 1, 1, 1, 1, 1], "VASP": [1, 1, 1, 1, 1, 1], "VBZ-Compression": [1, 1, 1, 1, 1, 1], "VCFtools": [0, 1, 1, 0, 1, 1], "VEP": [1, 1, 1, 0, 1, 1], "VESTA": [1, 1, 1, 0, 1, 1], "VMD": [0, 1, 1, 1, 1, 1], "VMTK": [0, 1, 1, 0, 1, 1], "VSCode": [1, 1, 1, 1, 1, 1], "VSEARCH": [1, 1, 1, 1, 1, 1], "VTK": [1, 1, 1, 1, 1, 1], "VTune": [0, 0, 0, 0, 0, 1], "Vala": [0, 1, 1, 0, 1, 1], "Valgrind": [1, 1, 1, 0, 1, 1], "VarScan": [1, 1, 1, 0, 1, 1], "Velvet": [1, 1, 1, 1, 1, 1], "VirSorter2": [1, 1, 1, 1, 1, 1], "VisPy": [1, 1, 1, 1, 1, 1], "Voro++": [1, 1, 1, 0, 1, 1], "WFA2": [1, 1, 1, 1, 1, 1], "WHAM": [0, 1, 1, 0, 1, 1], "WIEN2k": [0, 1, 1, 1, 1, 1], "WPS": [0, 1, 1, 0, 1, 1], "WRF": [0, 1, 1, 1, 1, 1], "Wannier90": [1, 1, 1, 1, 1, 1], "Wayland": [1, 1, 1, 1, 1, 1], "Waylandpp": [1, 1, 1, 1, 1, 1], "WebKitGTK+": [1, 1, 1, 1, 1, 1], "WhatsHap": [1, 1, 1, 1, 1, 1], "Winnowmap": [0, 1, 0, 0, 0, 1], "WisecondorX": [0, 1, 1, 0, 1, 1], "X11": [1, 1, 1, 1, 1, 1], "XCFun": [1, 1, 1, 1, 1, 1], "XCrySDen": [1, 1, 1, 0, 1, 1], "XGBoost": [1, 1, 1, 1, 1, 1], "XML-Compile": [1, 1, 1, 1, 1, 1], "XML-LibXML": [1, 1, 1, 1, 1, 1], "XZ": [1, 1, 1, 1, 1, 1], "Xerces-C++": [1, 1, 1, 1, 1, 1], "XlsxWriter": [1, 1, 1, 1, 1, 1], "Xvfb": [1, 1, 1, 1, 1, 1], "YACS": [1, 0, 0, 0, 1, 0], "YANK": [0, 1, 1, 0, 1, 1], "YAXT": [1, 1, 1, 0, 1, 1], "Yambo": [1, 1, 1, 1, 1, 1], "Yasm": [1, 1, 1, 1, 1, 1], "Z3": [1, 1, 1, 1, 1, 1], "Zeo++": [1, 1, 1, 1, 1, 1], "ZeroMQ": [1, 1, 1, 1, 1, 1], "Zip": [1, 1, 1, 1, 1, 1], "Zopfli": [1, 1, 1, 1, 1, 1], "adjustText": [1, 1, 1, 0, 1, 1], "aiohttp": [1, 1, 1, 1, 1, 1], "alevin-fry": [0, 1, 0, 0, 0, 0], "alleleCount": [1, 1, 1, 1, 1, 1], "alleleIntegrator": [1, 1, 1, 1, 1, 1], "alsa-lib": [1, 1, 1, 1, 1, 1], "anadama2": [1, 1, 1, 1, 1, 1], "angsd": [1, 1, 1, 1, 1, 1], "anndata": [1, 1, 1, 1, 1, 1], "ant": [1, 1, 1, 1, 1, 1], "antiSMASH": [0, 1, 1, 1, 1, 1], "anvio": [1, 1, 1, 1, 1, 1], "any2fasta": [0, 1, 1, 0, 1, 1], "apex": [0, 0, 0, 0, 1, 0], "archspec": [1, 1, 1, 0, 1, 1], "argtable": [1, 1, 1, 0, 1, 1], "aria2": [0, 1, 1, 0, 1, 1], "arpack-ng": [1, 1, 1, 1, 1, 1], "arrow": [0, 1, 1, 0, 1, 1], "arrow-R": [1, 1, 1, 1, 1, 1], "at-spi2-atk": [1, 1, 1, 1, 1, 1], "at-spi2-core": [1, 1, 1, 1, 1, 1], "atools": [1, 1, 1, 0, 1, 1], "attr": [1, 1, 1, 1, 1, 1], "attrdict": [0, 1, 1, 0, 1, 1], "attrdict3": [1, 1, 1, 1, 1, 1], "augur": [0, 1, 1, 0, 1, 1], "autopep8": [1, 1, 1, 1, 1, 1], "awscli": [1, 1, 1, 1, 1, 1], "babl": [0, 1, 1, 0, 1, 1], "bam-readcount": [0, 1, 1, 0, 1, 1], "bamFilters": [1, 1, 1, 0, 1, 1], "barrnap": [1, 1, 1, 1, 1, 1], "basemap": [1, 1, 1, 1, 1, 1], "bcbio-gff": [1, 1, 1, 1, 1, 1], "bcgTree": [1, 1, 1, 0, 1, 1], "bcl-convert": [1, 1, 1, 0, 1, 1], "bcl2fastq2": [1, 1, 1, 0, 1, 1], "beagle-lib": [1, 1, 1, 1, 1, 1], "binutils": [1, 1, 1, 1, 1, 1], "biobakery-workflows": [1, 1, 1, 1, 1, 1], "biobambam2": [1, 1, 1, 1, 1, 1], "biogeme": [1, 1, 1, 0, 1, 1], "biom-format": [1, 1, 1, 1, 1, 1], "bmtagger": [0, 1, 1, 1, 1, 1], "bokeh": [1, 1, 1, 1, 1, 1], "boto3": [1, 1, 1, 1, 1, 1], "bpp": [0, 1, 1, 0, 1, 0], "btllib": [1, 1, 1, 1, 1, 1], "build": [1, 1, 1, 1, 1, 1], "buildenv": [0, 1, 1, 0, 1, 1], "buildingspy": [1, 1, 1, 0, 1, 1], "bwa-meth": [1, 1, 1, 1, 1, 1], "bwidget": [1, 1, 1, 1, 1, 1], "bx-python": [1, 1, 1, 1, 1, 1], "bzip2": [1, 1, 1, 1, 1, 1], "c-ares": [1, 1, 1, 1, 1, 1], "cURL": [1, 1, 1, 1, 1, 1], "cairo": [1, 1, 1, 1, 1, 1], "canu": [1, 1, 1, 0, 1, 1], "carputils": [0, 1, 1, 1, 1, 1], "ccache": [1, 1, 1, 1, 1, 1], "cctbx-base": [1, 1, 1, 1, 1, 1], "cdbfasta": [0, 1, 1, 0, 1, 0], "cdo-bindings": [1, 1, 1, 1, 1, 1], "cdsapi": [1, 1, 1, 0, 1, 1], "cell2location": [0, 0, 0, 0, 1, 0], "cffi": [1, 1, 1, 1, 1, 1], "chemprop": [1, 1, 1, 1, 1, 1], "chewBBACA": [0, 1, 1, 0, 1, 1], "cicero": [1, 1, 1, 1, 1, 1], "cimfomfa": [1, 1, 1, 1, 1, 1], "code-cli": [1, 1, 1, 1, 1, 1], "code-server": [1, 1, 1, 1, 1, 1], "colossalai": [1, 0, 0, 0, 1, 0], "conan": [1, 1, 1, 1, 1, 1], "configurable-http-proxy": [1, 1, 1, 1, 1, 1], "cooler": [1, 1, 1, 1, 1, 1], "coverage": [1, 1, 1, 1, 1, 1], "cppy": [1, 1, 1, 1, 1, 1], "cpu_features": [0, 1, 1, 1, 1, 1], "cryoDRGN": [1, 0, 0, 0, 1, 0], "cryptography": [1, 1, 1, 1, 1, 1], "cuDNN": [1, 1, 1, 0, 1, 1], "cuTENSOR": [0, 0, 0, 0, 1, 0], "cutadapt": [1, 1, 1, 1, 1, 1], "cuteSV": [1, 1, 1, 1, 1, 1], "cython-blis": [1, 1, 1, 1, 1, 1], "dask": [1, 1, 1, 1, 1, 1], "dbus-glib": [1, 1, 1, 1, 1, 1], "dclone": [1, 1, 1, 1, 1, 1], "deal.II": [0, 1, 1, 0, 1, 1], "decona": [0, 1, 1, 0, 1, 1], "deepTools": [1, 1, 1, 0, 1, 1], "deepdiff": [1, 1, 1, 1, 1, 1], "detectron2": [1, 0, 0, 0, 1, 0], "devbio-napari": [1, 1, 1, 1, 1, 1], "dicom2nifti": [1, 1, 1, 1, 1, 1], "dijitso": [0, 1, 1, 0, 1, 1], "dill": [1, 1, 1, 1, 1, 1], "dlib": [0, 1, 1, 0, 1, 1], "dm-haiku": [1, 0, 0, 0, 1, 0], "dm-tree": [1, 1, 1, 1, 1, 1], "dorado": [1, 0, 1, 0, 1, 0], "double-conversion": [1, 1, 1, 1, 1, 1], "drmaa-python": [1, 1, 1, 1, 1, 1], "dtcwt": [0, 1, 1, 0, 1, 1], "duplex-tools": [1, 1, 1, 1, 1, 1], "dynesty": [1, 1, 1, 1, 1, 1], "eSpeak-NG": [0, 1, 1, 0, 1, 1], "ebGSEA": [1, 1, 1, 1, 1, 1], "ecCodes": [1, 1, 1, 1, 1, 1], "edlib": [1, 1, 1, 1, 1, 1], "eggnog-mapper": [1, 1, 1, 1, 1, 1], "einops": [1, 1, 1, 1, 1, 1], "elfutils": [1, 1, 1, 1, 1, 1], "elprep": [0, 1, 1, 0, 1, 0], "enchant-2": [1, 1, 1, 1, 1, 1], "epiScanpy": [1, 1, 1, 1, 1, 1], "exiv2": [1, 1, 1, 1, 1, 1], "expat": [1, 1, 1, 1, 1, 1], "expecttest": [1, 1, 1, 1, 1, 1], "fasta-reader": [1, 1, 1, 1, 1, 1], "fastahack": [1, 1, 1, 1, 1, 1], "fastai": [1, 1, 1, 1, 1, 1], "fastp": [1, 1, 1, 0, 1, 1], "fermi-lite": [0, 1, 1, 0, 1, 1], "festival": [0, 1, 1, 0, 1, 1], "fetchMG": [0, 1, 1, 0, 1, 1], "ffnvcodec": [1, 1, 1, 1, 1, 1], "file": [1, 1, 1, 1, 1, 1], "filevercmp": [1, 1, 1, 1, 1, 1], "finder": [1, 1, 1, 1, 1, 1], "flair-NLP": [1, 1, 1, 0, 1, 1], "flatbuffers": [1, 1, 1, 1, 1, 1], "flatbuffers-python": [1, 1, 1, 1, 1, 1], "flex": [1, 1, 1, 1, 1, 1], "flit": [1, 1, 1, 1, 1, 1], "flowFDA": [1, 1, 1, 1, 1, 1], "fmt": [1, 1, 1, 1, 1, 1], "fontconfig": [1, 1, 1, 1, 1, 1], "foss": [1, 1, 1, 1, 1, 1], "fosscuda": [1, 0, 0, 0, 1, 0], "freebayes": [0, 1, 1, 0, 1, 0], "freeglut": [1, 1, 1, 1, 1, 1], "freetype": [1, 1, 1, 1, 1, 1], "freetype-py": [0, 1, 1, 0, 1, 1], "fsom": [1, 1, 1, 1, 1, 1], "funannotate": [1, 1, 1, 1, 1, 1], "g2clib": [0, 1, 1, 0, 1, 1], "g2lib": [0, 1, 1, 0, 1, 1], "g2log": [0, 1, 1, 0, 1, 1], "garnett": [0, 1, 1, 1, 1, 1], "gawk": [0, 1, 1, 1, 1, 1], "gbasis": [1, 1, 1, 1, 1, 1], "gc": [1, 1, 1, 1, 1, 1], "gcccuda": [1, 1, 1, 1, 1, 1], "gcloud": [0, 1, 1, 0, 1, 1], "gcsfs": [1, 1, 1, 1, 1, 1], "gdbm": [0, 1, 1, 0, 1, 1], "gdc-client": [1, 1, 1, 1, 0, 1], "gengetopt": [0, 1, 1, 1, 1, 1], "genomepy": [1, 1, 1, 1, 1, 1], "genozip": [1, 1, 1, 0, 1, 1], "gensim": [1, 1, 1, 1, 1, 1], "geopandas": [1, 1, 1, 1, 1, 1], "gettext": [1, 1, 1, 1, 1, 1], "gexiv2": [0, 1, 1, 0, 1, 1], "gfbf": [1, 1, 1, 1, 1, 1], "gffread": [1, 1, 1, 1, 1, 1], "gffutils": [1, 1, 1, 1, 1, 1], "gflags": [1, 1, 1, 1, 1, 1], "giflib": [1, 1, 1, 1, 1, 1], "git": [1, 1, 1, 1, 1, 1], "git-lfs": [1, 1, 1, 0, 1, 1], "glew": [1, 1, 1, 1, 1, 1], "glib-networking": [1, 1, 1, 1, 1, 1], "glibc": [0, 1, 0, 0, 0, 1], "glog": [1, 1, 1, 1, 1, 1], "gmpy2": [1, 1, 1, 1, 1, 1], "gmsh": [0, 1, 1, 0, 1, 1], "gnuplot": [1, 1, 1, 1, 1, 1], "goalign": [0, 0, 1, 0, 1, 0], "gobff": [0, 1, 0, 0, 0, 0], "gomkl": [1, 1, 1, 1, 1, 1], "gompi": [1, 1, 1, 1, 1, 1], "gompic": [1, 1, 0, 0, 1, 1], "googletest": [1, 1, 1, 1, 1, 1], "gotree": [0, 0, 1, 0, 1, 0], "gperf": [1, 1, 1, 1, 1, 1], "gperftools": [1, 1, 1, 1, 1, 1], "gpustat": [0, 0, 0, 0, 1, 0], "graphite2": [1, 1, 1, 1, 1, 1], "graphviz-python": [1, 1, 1, 1, 1, 1], "grid": [1, 1, 1, 1, 1, 1], "groff": [1, 1, 1, 1, 1, 1], "gzip": [1, 1, 1, 1, 1, 1], "h5netcdf": [1, 1, 1, 1, 1, 1], "h5py": [1, 1, 1, 1, 1, 1], "harmony": [0, 1, 1, 0, 1, 1], "hatchling": [1, 1, 1, 1, 1, 1], "help2man": [1, 1, 1, 1, 1, 1], "hierfstat": [0, 1, 1, 0, 1, 1], "hifiasm": [1, 1, 1, 1, 1, 1], "hiredis": [1, 1, 1, 1, 1, 1], "histolab": [1, 1, 1, 0, 1, 1], "hmmlearn": [1, 1, 1, 1, 1, 1], "horton": [0, 1, 1, 0, 1, 1], "how_are_we_stranded_here": [1, 1, 1, 0, 1, 1], "humann": [1, 1, 1, 1, 1, 1], "hunspell": [1, 1, 1, 1, 1, 1], "hwloc": [1, 1, 1, 1, 1, 1], "hyperopt": [0, 1, 1, 0, 1, 0], "hypothesis": [1, 1, 1, 1, 1, 1], "iccifort": [1, 1, 1, 1, 1, 1], "iccifortcuda": [0, 0, 0, 0, 1, 0], "ichorCNA": [0, 1, 1, 0, 1, 1], "idemux": [0, 1, 1, 0, 1, 1], "igraph": [1, 1, 1, 1, 1, 1], "igvShiny": [1, 1, 1, 1, 1, 1], "iibff": [0, 1, 0, 0, 0, 0], "iimpi": [1, 1, 1, 1, 1, 1], "iimpic": [0, 0, 0, 0, 1, 0], "imagecodecs": [1, 1, 1, 1, 1, 1], "imageio": [1, 1, 1, 1, 1, 1], "imbalanced-learn": [1, 1, 1, 1, 1, 1], "imgaug": [1, 1, 1, 0, 1, 1], "imkl": [1, 1, 1, 1, 1, 1], "imkl-FFTW": [1, 1, 1, 1, 1, 1], "impi": [1, 1, 1, 1, 1, 1], "imutils": [1, 0, 1, 0, 1, 0], "inferCNV": [1, 1, 1, 1, 1, 1], "infercnvpy": [1, 1, 1, 1, 1, 1], "inflection": [1, 1, 1, 1, 1, 1], "intel": [1, 1, 1, 1, 1, 1], "intel-compilers": [1, 1, 1, 1, 1, 1], "intelcuda": [0, 0, 0, 0, 1, 0], "intervaltree": [1, 1, 1, 1, 1, 1], "intervaltree-python": [1, 1, 1, 1, 1, 1], "intltool": [1, 1, 1, 1, 1, 1], "iodata": [1, 1, 1, 1, 1, 1], "iomkl": [1, 1, 1, 1, 1, 1], "iompi": [1, 1, 1, 1, 1, 1], "isoCirc": [0, 1, 1, 1, 1, 1], "jax": [1, 1, 1, 1, 1, 1], "jbigkit": [1, 1, 1, 1, 1, 1], "jemalloc": [1, 1, 1, 1, 1, 1], "jobcli": [0, 1, 0, 0, 0, 0], "joypy": [0, 1, 1, 0, 1, 1], "json-c": [1, 1, 1, 1, 1, 1], "jupyter-contrib-nbextensions": [1, 1, 1, 1, 1, 1], "jupyter-server": [1, 1, 1, 1, 1, 1], "jupyter-server-proxy": [1, 1, 1, 1, 1, 1], "jxrlib": [1, 1, 1, 1, 1, 1], "kallisto": [1, 1, 1, 1, 1, 1], "kb-python": [1, 1, 1, 1, 1, 1], "kim-api": [1, 1, 1, 0, 1, 1], "kineto": [1, 1, 1, 1, 1, 1], "kma": [0, 1, 1, 0, 1, 1], "kneaddata": [1, 1, 1, 1, 1, 1], "krbalancing": [1, 1, 1, 1, 1, 1], "lancet": [0, 1, 0, 0, 0, 0], "lavaan": [0, 1, 1, 0, 1, 1], "leafcutter": [1, 1, 1, 1, 1, 1], "legacy-job-wrappers": [0, 1, 1, 0, 1, 0], "leidenalg": [1, 1, 1, 1, 1, 1], "lftp": [1, 1, 1, 0, 1, 1], "libBigWig": [0, 1, 1, 0, 1, 1], "libFLAME": [0, 1, 0, 0, 0, 0], "libGLU": [1, 1, 1, 1, 1, 1], "libRmath": [0, 1, 1, 0, 1, 1], "libaec": [1, 1, 1, 1, 1, 1], "libaio": [1, 1, 1, 1, 1, 1], "libarchive": [1, 1, 1, 1, 1, 1], "libavif": [1, 1, 1, 1, 1, 1], "libcdms": [0, 1, 1, 0, 1, 1], "libcerf": [1, 1, 1, 1, 1, 1], "libcint": [1, 1, 1, 1, 1, 1], "libdap": [0, 1, 1, 0, 1, 1], "libde265": [1, 1, 1, 1, 1, 1], "libdeflate": [1, 1, 1, 1, 1, 1], "libdrm": [1, 1, 1, 1, 1, 1], "libdrs": [0, 1, 1, 0, 1, 1], "libepoxy": [1, 1, 1, 1, 1, 1], "libev": [1, 1, 1, 1, 1, 1], "libevent": [1, 1, 1, 1, 1, 1], "libfabric": [1, 1, 1, 1, 1, 1], "libffi": [1, 1, 1, 1, 1, 1], "libgcrypt": [1, 1, 1, 1, 1, 1], "libgd": [1, 1, 1, 1, 1, 1], "libgeotiff": [1, 1, 1, 1, 1, 1], "libgit2": [1, 1, 1, 1, 1, 1], "libglvnd": [1, 1, 1, 1, 1, 1], "libgpg-error": [1, 1, 1, 1, 1, 1], "libgpuarray": [1, 0, 0, 0, 1, 0], "libharu": [1, 1, 1, 0, 1, 1], "libheif": [1, 1, 1, 1, 1, 1], "libiconv": [1, 1, 1, 1, 1, 1], "libidn": [1, 1, 1, 1, 1, 1], "libidn2": [1, 1, 1, 1, 1, 1], "libjpeg-turbo": [1, 1, 1, 1, 1, 1], "libjxl": [1, 1, 1, 1, 1, 1], "libleidenalg": [1, 1, 1, 1, 1, 1], "libmad": [1, 1, 1, 1, 1, 1], "libmatheval": [0, 1, 1, 0, 1, 1], "libmaus2": [1, 1, 1, 1, 1, 1], "libmypaint": [0, 1, 1, 0, 1, 1], "libobjcryst": [1, 1, 1, 0, 1, 1], "libogg": [1, 1, 1, 1, 1, 1], "libopus": [1, 1, 1, 1, 1, 1], "libpciaccess": [1, 1, 1, 1, 1, 1], "libpng": [1, 1, 1, 1, 1, 1], "libpsl": [1, 1, 1, 1, 1, 1], "libreadline": [1, 1, 1, 1, 1, 1], "librosa": [0, 0, 1, 0, 1, 1], "librsvg": [0, 1, 1, 0, 1, 1], "librttopo": [1, 1, 1, 1, 1, 1], "libsigc++": [0, 1, 1, 0, 1, 1], "libsndfile": [1, 1, 1, 1, 1, 1], "libsodium": [1, 1, 1, 1, 1, 1], "libspatialindex": [1, 1, 1, 1, 1, 1], "libspatialite": [1, 1, 1, 1, 1, 1], "libtasn1": [1, 1, 1, 1, 1, 1], "libtirpc": [1, 1, 1, 1, 1, 1], "libtool": [1, 1, 1, 1, 1, 1], "libunistring": [1, 1, 1, 1, 1, 1], "libunwind": [1, 1, 1, 1, 1, 1], "libvdwxc": [1, 1, 1, 0, 1, 1], "libvorbis": [1, 1, 1, 1, 1, 1], "libvori": [1, 1, 1, 1, 1, 1], "libwebp": [1, 1, 1, 1, 1, 1], "libwpe": [1, 1, 1, 1, 1, 1], "libxc": [1, 1, 1, 1, 1, 1], "libxml++": [0, 1, 1, 0, 1, 1], "libxml2": [1, 1, 1, 1, 1, 1], "libxslt": [1, 1, 1, 1, 1, 1], "libxsmm": [1, 1, 1, 1, 1, 1], "libyaml": [1, 1, 1, 1, 1, 1], "libzip": [1, 1, 1, 1, 1, 1], "lifelines": [1, 1, 1, 1, 1, 1], "likwid": [0, 0, 1, 0, 1, 0], "lmoments3": [1, 1, 1, 1, 1, 1], "longread_umi": [0, 1, 1, 1, 1, 1], "loomR": [1, 1, 1, 1, 1, 1], "loompy": [1, 1, 1, 1, 1, 1], "louvain": [1, 1, 1, 1, 1, 1], "lpsolve": [1, 1, 1, 1, 1, 1], "lxml": [1, 1, 1, 1, 1, 1], "lz4": [1, 1, 1, 1, 1, 1], "maeparser": [1, 1, 1, 1, 1, 1], "magma": [1, 0, 1, 0, 1, 0], "mahotas": [1, 1, 1, 1, 1, 1], "make": [1, 1, 1, 1, 1, 1], "makedepend": [0, 1, 1, 0, 1, 1], "makeinfo": [1, 1, 1, 1, 1, 1], "manta": [0, 1, 1, 0, 1, 1], "mapDamage": [1, 1, 1, 0, 1, 1], "matplotlib": [1, 1, 1, 1, 1, 1], "maturin": [1, 1, 1, 1, 1, 1], "mauveAligner": [0, 1, 1, 0, 1, 1], "maze": [0, 1, 1, 1, 1, 1], "mcu": [1, 1, 1, 0, 1, 1], "medImgProc": [0, 1, 0, 0, 0, 1], "medaka": [1, 1, 1, 1, 1, 1], "meshalyzer": [0, 1, 1, 1, 1, 1], "meshtool": [0, 1, 1, 1, 1, 1], "meson-python": [1, 1, 1, 1, 1, 1], "metaWRAP": [0, 1, 1, 1, 1, 1], "metaerg": [0, 1, 1, 0, 1, 1], "methylpy": [1, 1, 1, 0, 1, 1], "mgen": [1, 1, 1, 1, 1, 1], "mgltools": [1, 1, 1, 0, 1, 1], "mhcnuggets": [0, 1, 1, 1, 1, 1], "microctools": [0, 1, 1, 1, 1, 1], "minibar": [0, 1, 1, 0, 1, 0], "minimap2": [1, 1, 1, 1, 1, 1], "minizip": [1, 1, 1, 1, 1, 1], "misha": [0, 1, 1, 0, 1, 1], "mkl-service": [1, 1, 1, 0, 1, 1], "mm-common": [0, 1, 1, 0, 1, 1], "molmod": [1, 1, 1, 1, 1, 1], "mongolite": [0, 1, 1, 1, 1, 1], "monitor": [0, 1, 1, 0, 1, 0], "mosdepth": [1, 1, 1, 0, 1, 1], "motionSegmentation": [0, 1, 0, 0, 0, 1], "mpath": [1, 1, 1, 1, 1, 1], "mpi4py": [1, 1, 1, 1, 1, 1], "mrcfile": [1, 1, 1, 1, 1, 1], "muParser": [1, 1, 1, 1, 1, 1], "mujoco-py": [1, 1, 1, 1, 1, 1], "multichoose": [1, 1, 1, 1, 1, 1], "mygene": [1, 1, 1, 1, 1, 1], "mysqlclient": [1, 1, 1, 0, 1, 1], "n2v": [1, 1, 1, 1, 1, 1], "nanocompore": [0, 1, 1, 0, 1, 1], "nanofilt": [0, 1, 1, 0, 1, 1], "nanoget": [1, 1, 1, 1, 1, 1], "nanomath": [1, 1, 1, 1, 1, 1], "nanopolish": [1, 1, 1, 1, 1, 1], "napari": [1, 1, 1, 1, 1, 1], "ncbi-vdb": [1, 1, 1, 1, 1, 1], "ncdf4": [1, 1, 1, 1, 1, 1], "ncolor": [1, 1, 1, 1, 1, 1], "ncurses": [1, 1, 1, 1, 1, 1], "ncview": [0, 1, 1, 0, 1, 1], "netCDF": [1, 1, 1, 1, 1, 1], "netCDF-C++4": [1, 1, 1, 1, 1, 1], "netCDF-Fortran": [1, 1, 1, 1, 1, 1], "netcdf4-python": [1, 1, 1, 1, 1, 1], "nettle": [1, 1, 1, 1, 1, 1], "networkx": [1, 1, 1, 1, 1, 1], "nghttp2": [1, 1, 1, 1, 1, 1], "nghttp3": [1, 1, 1, 1, 1, 1], "nglview": [1, 1, 1, 1, 1, 1], "ngtcp2": [1, 1, 1, 1, 1, 1], "nichenetr": [1, 1, 1, 1, 1, 1], "nlohmann_json": [1, 1, 1, 1, 1, 1], "nnU-Net": [1, 1, 1, 1, 1, 1], "nodejs": [1, 1, 1, 1, 1, 1], "noise": [1, 1, 1, 1, 1, 1], "nsync": [1, 1, 1, 1, 1, 1], "ntCard": [1, 1, 1, 1, 1, 1], "num2words": [1, 0, 0, 0, 1, 0], "numactl": [1, 1, 1, 1, 1, 1], "numba": [1, 1, 1, 1, 1, 1], "numexpr": [1, 1, 1, 1, 1, 1], "nvtop": [1, 0, 0, 0, 0, 0], "olaFlow": [1, 1, 1, 0, 1, 1], "olego": [1, 1, 1, 1, 1, 1], "onedrive": [1, 1, 1, 0, 1, 1], "ont-fast5-api": [1, 1, 1, 1, 1, 1], "openCARP": [0, 1, 1, 1, 1, 1], "openkim-models": [0, 1, 1, 0, 1, 1], "openpyxl": [1, 1, 1, 1, 1, 1], "openslide-python": [1, 1, 1, 0, 1, 1], "orca": [0, 1, 0, 0, 0, 0], "p11-kit": [1, 1, 1, 1, 1, 1], "p4est": [0, 1, 1, 0, 1, 1], "p7zip": [0, 1, 1, 0, 1, 1], "pIRS": [0, 1, 1, 0, 1, 1], "packmol": [0, 1, 1, 0, 1, 1], "pagmo": [0, 1, 1, 1, 1, 1], "pairtools": [1, 1, 1, 0, 1, 1], "panaroo": [0, 1, 1, 1, 1, 1], "pandas": [0, 1, 1, 0, 1, 1], "parallel": [1, 1, 1, 1, 1, 1], "parallel-fastq-dump": [1, 1, 1, 1, 1, 1], "parasail": [1, 1, 1, 1, 1, 1], "patchelf": [1, 1, 1, 1, 1, 1], "pauvre": [0, 1, 1, 0, 1, 1], "pblat": [1, 1, 1, 1, 1, 1], "pdsh": [1, 1, 1, 1, 1, 1], "peakdetect": [1, 1, 1, 1, 1, 1], "petsc4py": [1, 1, 1, 1, 1, 1], "pftoolsV3": [0, 1, 1, 0, 1, 1], "phonemizer": [0, 1, 1, 0, 1, 1], "phonopy": [1, 1, 1, 1, 1, 1], "phototonic": [0, 1, 1, 0, 1, 1], "phyluce": [1, 1, 1, 1, 1, 1], "picard": [1, 1, 1, 1, 1, 1], "pigz": [1, 1, 1, 1, 1, 1], "pixman": [1, 1, 1, 1, 1, 1], "pkg-config": [1, 1, 1, 1, 1, 1], "pkgconf": [1, 1, 1, 1, 1, 1], "pkgconfig": [1, 1, 1, 1, 1, 1], "plot1cell": [1, 1, 1, 1, 1, 1], "plotly-orca": [0, 1, 1, 1, 1, 1], "plotly.py": [1, 1, 1, 1, 1, 1], "pocl": [1, 1, 1, 1, 1, 1], "pod5-file-format": [1, 1, 1, 1, 1, 1], "poetry": [1, 1, 1, 1, 1, 1], "polars": [1, 1, 1, 1, 1, 1], "poppler": [1, 1, 1, 1, 1, 1], "popscle": [1, 1, 1, 1, 1, 1], "porefoam": [0, 1, 1, 0, 1, 1], "powerlaw": [1, 1, 1, 1, 1, 1], "pplacer": [1, 1, 1, 1, 1, 1], "preseq": [1, 1, 1, 1, 1, 1], "presto": [1, 1, 1, 1, 1, 1], "pretty-yaml": [1, 1, 1, 0, 1, 1], "prodigal": [1, 1, 1, 1, 1, 1], "prokka": [0, 1, 1, 1, 1, 1], "protobuf": [1, 1, 1, 1, 1, 1], "protobuf-python": [1, 1, 1, 1, 1, 1], "psutil": [1, 1, 1, 1, 1, 1], "psycopg2": [1, 1, 1, 1, 1, 1], "pugixml": [1, 1, 1, 1, 1, 1], "pullseq": [1, 1, 1, 1, 1, 1], "purge_dups": [1, 1, 1, 0, 1, 1], "pv": [1, 1, 1, 1, 1, 1], "py-cpuinfo": [1, 1, 1, 1, 1, 1], "py3Dmol": [1, 0, 1, 0, 1, 0], "pyBigWig": [1, 1, 1, 1, 1, 1], "pyEGA3": [1, 1, 1, 1, 1, 1], "pyGenomeTracks": [1, 1, 1, 1, 1, 1], "pySCENIC": [0, 1, 1, 0, 1, 1], "pyWannier90": [1, 1, 1, 0, 1, 1], "pybedtools": [1, 1, 1, 1, 1, 1], "pybind11": [1, 1, 1, 1, 1, 1], "pycocotools": [1, 1, 1, 0, 1, 1], "pycodestyle": [1, 1, 1, 1, 1, 1], "pydantic": [1, 1, 1, 1, 1, 1], "pydicom": [1, 1, 1, 1, 1, 1], "pydot": [1, 1, 1, 1, 1, 1], "pyfaidx": [1, 1, 1, 1, 1, 1], "pyfasta": [0, 1, 1, 1, 1, 1], "pygmo": [0, 1, 1, 1, 1, 1], "pygraphviz": [1, 1, 1, 1, 1, 1], "pyiron": [1, 1, 1, 1, 1, 1], "pymatgen": [1, 1, 1, 1, 1, 1], "pymbar": [0, 1, 1, 0, 1, 1], "pymca": [0, 1, 1, 1, 1, 1], "pyobjcryst": [1, 1, 1, 0, 1, 1], "pyodbc": [1, 1, 1, 1, 1, 1], "pyparsing": [0, 1, 0, 0, 0, 1], "pyproj": [1, 1, 1, 1, 1, 1], "pyro-api": [0, 0, 0, 0, 1, 0], "pyro-ppl": [1, 1, 1, 1, 1, 1], "pysamstats": [0, 1, 1, 1, 1, 1], "pysndfx": [0, 1, 1, 0, 1, 1], "pyspoa": [1, 1, 1, 1, 1, 1], "pytest": [1, 1, 1, 1, 1, 1], "pytest-flakefinder": [1, 1, 1, 1, 1, 1], "pytest-rerunfailures": [1, 1, 1, 1, 1, 1], "pytest-shard": [1, 1, 1, 1, 1, 1], "pytest-xdist": [1, 1, 1, 1, 1, 1], "pythermalcomfort": [1, 1, 1, 1, 1, 1], "python-Levenshtein": [0, 1, 1, 1, 1, 1], "python-igraph": [1, 1, 1, 1, 1, 1], "python-irodsclient": [1, 1, 1, 0, 1, 1], "python-isal": [1, 1, 1, 1, 1, 1], "python-louvain": [1, 1, 1, 1, 1, 1], "python-parasail": [1, 1, 1, 1, 1, 1], "python-telegram-bot": [1, 1, 1, 0, 1, 1], "python-weka-wrapper3": [0, 1, 1, 0, 1, 1], "pythran": [0, 1, 1, 0, 1, 1], "qcat": [0, 1, 1, 0, 1, 1], "qnorm": [1, 1, 1, 1, 1, 1], "rMATS-turbo": [0, 1, 1, 1, 1, 1], "radian": [1, 1, 1, 1, 1, 1], "rasterio": [1, 1, 1, 1, 1, 1], "rasterstats": [0, 1, 1, 0, 1, 1], "rclone": [1, 1, 1, 1, 1, 1], "re2c": [1, 1, 1, 1, 1, 1], "redis-py": [1, 1, 1, 1, 1, 1], "regionmask": [1, 1, 1, 1, 1, 1], "request": [0, 0, 0, 0, 1, 0], "rethinking": [1, 1, 1, 1, 1, 1], "rgdal": [0, 1, 1, 1, 1, 1], "rgeos": [0, 1, 1, 0, 1, 1], "rickflow": [0, 1, 1, 0, 1, 1], "rioxarray": [1, 1, 1, 0, 1, 1], "rjags": [1, 1, 1, 1, 1, 1], "rmarkdown": [0, 1, 1, 1, 1, 1], "rpy2": [1, 1, 1, 1, 1, 1], "rstanarm": [0, 1, 1, 0, 1, 1], "rstudio": [0, 1, 0, 0, 0, 0], "ruamel.yaml": [1, 1, 1, 1, 1, 1], "ruffus": [1, 1, 1, 1, 1, 1], "s3fs": [1, 1, 1, 1, 1, 1], "samblaster": [0, 1, 1, 1, 1, 1], "samclip": [1, 1, 1, 0, 1, 1], "sansa": [0, 1, 1, 1, 1, 1], "sbt": [0, 0, 1, 0, 1, 0], "scArches": [1, 1, 1, 1, 1, 1], "scCODA": [1, 1, 1, 1, 1, 1], "scGeneFit": [0, 1, 1, 0, 1, 1], "scHiCExplorer": [1, 1, 1, 1, 1, 1], "scPred": [1, 1, 1, 0, 1, 1], "scVelo": [1, 1, 1, 1, 1, 1], "scanpy": [1, 1, 1, 1, 1, 1], "sceasy": [1, 1, 1, 1, 1, 1], "scib": [1, 1, 1, 1, 1, 1], "scib-metrics": [1, 1, 1, 1, 1, 1], "scikit-bio": [1, 1, 1, 1, 1, 1], "scikit-build": [1, 1, 1, 1, 1, 1], "scikit-extremes": [1, 1, 1, 1, 1, 1], "scikit-image": [1, 1, 1, 1, 1, 1], "scikit-learn": [1, 1, 1, 1, 1, 1], "scikit-misc": [1, 1, 1, 1, 1, 1], "scikit-optimize": [1, 1, 1, 0, 1, 1], "scipy": [0, 1, 1, 0, 1, 1], "scrublet": [1, 1, 1, 1, 1, 1], "scvi-tools": [1, 1, 1, 1, 1, 1], "segemehl": [1, 1, 1, 1, 1, 1], "segmentation-models": [0, 1, 0, 0, 0, 1], "semla": [1, 1, 1, 1, 1, 1], "seqtk": [1, 1, 1, 1, 1, 1], "setuptools": [1, 1, 1, 1, 1, 1], "setuptools-rust": [1, 1, 1, 1, 1, 1], "sf": [0, 1, 1, 0, 1, 1], "shovill": [1, 1, 1, 0, 1, 1], "silhouetteRank": [1, 1, 1, 1, 1, 1], "silx": [0, 1, 1, 1, 1, 1], "slepc4py": [1, 1, 1, 1, 1, 1], "slow5tools": [1, 1, 1, 0, 1, 1], "slurm-drmaa": [1, 1, 1, 1, 1, 1], "smfishHmrf": [1, 1, 1, 1, 1, 1], "smithwaterman": [1, 1, 1, 1, 1, 1], "smooth-topk": [1, 1, 1, 0, 1, 1], "snakemake": [1, 1, 1, 1, 1, 1], "snappy": [1, 1, 1, 1, 1, 1], "snippy": [0, 1, 1, 0, 1, 0], "snp-sites": [0, 1, 1, 0, 1, 1], "snpEff": [0, 1, 1, 0, 1, 1], "solo": [1, 1, 1, 1, 1, 1], "sonic": [0, 1, 1, 0, 1, 1], "spaCy": [1, 1, 1, 1, 1, 1], "spaln": [1, 1, 1, 1, 1, 1], "sparse-neighbors-search": [1, 1, 1, 1, 1, 1], "sparsehash": [1, 1, 1, 1, 1, 1], "spatialreg": [0, 1, 1, 0, 1, 1], "speech_tools": [0, 1, 1, 0, 1, 1], "spglib-python": [1, 1, 1, 1, 1, 1], "spoa": [1, 1, 1, 1, 1, 1], "stardist": [1, 1, 1, 1, 1, 1], "stars": [0, 1, 1, 0, 1, 1], "statsmodels": [1, 1, 1, 1, 1, 1], "suave": [0, 1, 1, 1, 1, 1], "supernova": [0, 0, 0, 0, 0, 1], "swissknife": [0, 1, 1, 0, 1, 1], "sympy": [1, 1, 1, 1, 1, 1], "synapseclient": [1, 1, 1, 1, 1, 1], "synthcity": [1, 1, 1, 1, 1, 1], "tMAE": [0, 1, 1, 1, 1, 1], "tabixpp": [1, 1, 1, 1, 1, 1], "task-spooler": [1, 1, 1, 1, 1, 1], "taxator-tk": [0, 1, 1, 1, 1, 1], "tbb": [1, 1, 1, 1, 1, 1], "tbl2asn": [0, 1, 1, 1, 1, 1], "tcsh": [1, 1, 1, 1, 1, 1], "tensorboard": [1, 1, 1, 1, 1, 1], "tensorboardX": [1, 1, 1, 1, 1, 1], "tensorflow-probability": [1, 1, 1, 1, 1, 1], "texinfo": [0, 1, 1, 0, 1, 1], "texlive": [1, 1, 1, 1, 1, 1], "tidymodels": [1, 1, 1, 1, 1, 1], "time": [0, 1, 1, 1, 1, 1], "timm": [1, 0, 0, 0, 1, 0], "tmux": [0, 1, 1, 0, 1, 1], "tokenizers": [1, 1, 1, 1, 1, 1], "torchaudio": [1, 1, 1, 1, 1, 1], "torchtext": [1, 1, 1, 1, 1, 1], "torchvf": [1, 1, 1, 1, 1, 1], "torchvision": [1, 1, 1, 1, 1, 1], "tornado": [1, 1, 1, 1, 1, 1], "tqdm": [1, 1, 1, 1, 1, 1], "treatSens": [0, 1, 1, 0, 1, 1], "trimAl": [1, 1, 1, 1, 1, 1], "tsne": [0, 1, 1, 0, 1, 1], "typing-extensions": [1, 1, 1, 1, 1, 1], "umap-learn": [1, 1, 1, 1, 1, 1], "umi4cPackage": [0, 1, 1, 0, 1, 1], "uncertainties": [1, 1, 1, 1, 1, 1], "uncertainty-calibration": [1, 1, 1, 0, 1, 1], "unimap": [0, 1, 1, 1, 1, 1], "unixODBC": [1, 1, 1, 1, 1, 1], "utf8proc": [1, 1, 1, 1, 1, 1], "util-linux": [1, 1, 1, 1, 1, 1], "vConTACT2": [1, 1, 1, 1, 1, 1], "vaeda": [1, 1, 1, 1, 1, 1], "vbz_compression": [0, 1, 0, 0, 0, 0], "vcflib": [1, 1, 1, 1, 1, 1], "velocyto": [1, 1, 1, 1, 1, 1], "virtualenv": [1, 1, 1, 1, 1, 1], "vispr": [1, 1, 1, 1, 1, 1], "vitessce-python": [1, 1, 1, 1, 1, 1], "vitessceR": [1, 1, 1, 1, 1, 1], "vsc-mympirun": [1, 1, 1, 1, 1, 1], "vt": [0, 1, 1, 0, 1, 0], "wandb": [1, 1, 1, 0, 1, 1], "waves2Foam": [0, 1, 1, 0, 1, 1], "wget": [1, 1, 1, 1, 1, 1], "wgsim": [0, 1, 1, 0, 1, 1], "worker": [1, 1, 1, 1, 1, 1], "wpebackend-fdo": [1, 1, 1, 1, 1, 1], "wrapt": [1, 1, 1, 1, 1, 1], "wrf-python": [1, 1, 1, 1, 1, 1], "wtdbg2": [1, 1, 1, 0, 1, 1], "wxPython": [1, 1, 1, 1, 1, 1], "wxWidgets": [1, 1, 1, 1, 1, 1], "x264": [1, 1, 1, 1, 1, 1], "x265": [1, 1, 1, 1, 1, 1], "xESMF": [0, 1, 1, 0, 1, 1], "xarray": [1, 1, 1, 1, 1, 1], "xorg-macros": [1, 1, 1, 1, 1, 1], "xprop": [0, 1, 1, 1, 1, 1], "xproto": [0, 1, 1, 0, 1, 1], "xtb": [1, 1, 1, 1, 1, 1], "xxd": [1, 1, 1, 1, 1, 1], "yaff": [1, 1, 1, 1, 1, 1], "yaml-cpp": [1, 1, 1, 1, 1, 1], "zUMIs": [1, 1, 1, 1, 1, 1], "zarr": [1, 1, 1, 1, 1, 1], "zfp": [1, 1, 1, 1, 1, 1], "zlib": [1, 1, 1, 1, 1, 1], "zlib-ng": [1, 1, 1, 1, 1, 1], "zstd": [1, 1, 1, 1, 1, 1]}, "time_generated": "Thu, 07 Mar 2024 at 18:35:40 CET"} \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json index 669db41f24ee..ad2e656c76e9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json +++ b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json @@ -1 +1 @@ -{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "software": {"ABAQUS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ABAQUS/2023": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ABAQUS/2021-hotfix-2132": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ABAQUS/2022-hotfix-2214": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ABAQUS/2022": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "AdapterRemoval": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"AdapterRemoval/2.3.3-GCC-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "adjustText": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"adjustText/0.7.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "aiohttp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"aiohttp/3.8.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "aiohttp/3.8.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Albumentations": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Albumentations/1.1.0-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "Albumentations/1.1.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "alleleCount": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"alleleCount/4.2.1-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "alleleIntegrator": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"alleleIntegrator/0.8.8-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "AlphaFold": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"AlphaFold/2.0.0-fosscuda-2020b": ["accelgor", "joltik"], "AlphaFold/2.1.1-fosscuda-2020b": ["accelgor", "joltik"], "AlphaFold/2.1.2-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "AlphaFold/2.3.0-foss-2021b-CUDA-11.4.1": ["accelgor", "joltik"], "AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "AlphaFold/2.3.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold": ["accelgor", "joltik"], "AlphaFold/2.0.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "AlphaFold/2.1.2-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "AlphaFold/2.2.2-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "AlphaFold/2.3.4-foss-2022a-ColabFold": ["donphan", "joltik"]}}, "AlphaPulldown": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"AlphaPulldown/0.30.4-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "AlphaPulldown/0.30.4-fosscuda-2020b": ["accelgor", "joltik"], "AlphaPulldown/0.30.7-foss-2022a": ["donphan", "joltik"]}}, "AMAPVox": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"AMAPVox/1.9.4-Java-11": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "AMOS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"AMOS/3.1.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "AMPtk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"AMPtk/1.5.4-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Anaconda3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Anaconda3/2023.03-1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Anaconda3/2020.02": ["doduo", "donphan", "joltik"], "Anaconda3/2020.07": ["doduo"], "Anaconda3/2020.11": ["doduo", "donphan", "joltik", "swalot"]}}, "angsd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"angsd/0.940-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "anndata": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"anndata/0.8.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Annocript": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Annocript/2.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ant": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ant/1.10.9-Java-11": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ant/1.10.11-Java-11": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ant/1.10.12-Java-11": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ant/1.10.6-Java-1.8": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ant/1.10.7-Java-11": ["doduo", "donphan", "joltik", "skitty", "victini"], "ant/1.10.8-Java-11": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "APR-util": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"APR-util/1.6.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "APR": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"APR/1.7.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ARAGORN": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ARAGORN/1.2.41-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ARAGORN/1.2.38-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Archive-Zip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Archive-Zip/1.68-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Archive-Zip/1.68-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Archive-Zip/1.68-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ArchR": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ArchR/1.0.1-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "archspec": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"archspec/0.1.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "archspec/0.1.0-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "archspec/0.1.0-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "archspec/0.1.2-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "argtable": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"argtable/2.13-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Armadillo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Armadillo/11.4.3-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "arpack-ng": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"arpack-ng/3.8.0-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "arpack-ng/3.8.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "arpack-ng/3.8.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "arpack-ng/3.8.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "arpack-ng/3.7.0-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "arpack-ng/3.7.0-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "arrow-R": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"arrow-R/6.0.0.2-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "arrow-R/6.0.0.2-foss-2021b-R-4.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "arrow-R/8.0.0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "arrow-R/11.0.0.3-foss-2022b-R-4.2.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "arrow-R/6.0.0.2-foss-2021a-R-4.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Arrow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Arrow/6.0.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Arrow/8.0.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Arrow/11.0.0-gfbf-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Arrow/0.16.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik"], "Arrow/0.17.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Arrow/0.17.1-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Arrow/0.17.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Arrow/6.0.0-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Arrow/0.17.1-fosscuda-2020b": ["joltik"]}}, "ArviZ": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ArviZ/0.11.4-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ArviZ/0.7.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "ArviZ/0.7.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "ArviZ/0.11.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ASCAT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ASCAT/3.1.2-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ASE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ASE/3.20.1-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ASE/3.22.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ASE/3.22.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ASE/3.22.1-gomkl-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ASE/3.22.1-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ASE/3.22.1-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ASE/3.19.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "ASE/3.19.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "ASE/3.20.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ASE/3.21.1-foss-2020b": ["donphan", "gallade", "joltik"], "ASE/3.20.1-fosscuda-2020b": ["joltik"], "ASE/3.21.1-fosscuda-2020b": ["joltik"]}}, "at-spi2-atk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"at-spi2-atk/2.38.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "at-spi2-atk/2.38.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "at-spi2-atk/2.38.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "at-spi2-atk/2.38.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "at-spi2-atk/2.34.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "at-spi2-atk/2.38.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "at-spi2-core": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"at-spi2-core/2.40.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "at-spi2-core/2.40.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "at-spi2-core/2.44.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "at-spi2-core/2.46.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "at-spi2-core/2.34.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "at-spi2-core/2.38.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ATK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ATK/2.36.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ATK/2.36.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ATK/2.38.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ATK/2.38.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ATK/2.34.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "ATK/2.36.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "atools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"atools/1.5.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "atools/1.4.6-GCCcore-8.3.0-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "attr": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"attr/2.5.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "attrdict3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"attrdict3/2.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "AUGUSTUS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"AUGUSTUS/3.4.0-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "AUGUSTUS/3.4.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "AUGUSTUS/3.3.3-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "AUGUSTUS/3.3.3-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Autoconf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Autoconf/2.69-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autoconf/2.69-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autoconf/2.69-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autoconf/2.71-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autoconf/2.71-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autoconf/2.71-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autoconf/2.71-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autoconf/2.71-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autoconf/2.71": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autoconf/2.69-GCCcore-8.2.0": ["doduo", "swalot"], "Autoconf/2.69": ["swalot"]}}, "AutoDock-Vina": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"AutoDock-Vina/1.2.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Automake": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Automake/1.16.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Automake/1.16.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Automake/1.16.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Automake/1.16.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Automake/1.16.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Automake/1.16.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Automake/1.16.5-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Automake/1.16.5-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Automake/1.16.5": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Automake/1.15.1-GCCcore-8.3.0": ["doduo", "skitty", "victini"], "Automake/1.16.1-GCCcore-8.2.0": ["doduo", "swalot"]}}, "Autotools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Autotools/20180311-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autotools/20180311-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autotools/20200321-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autotools/20210128-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autotools/20210726-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autotools/20220317-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autotools/20220317-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autotools/20220317-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autotools/20220317": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Autotools/20180311-GCCcore-8.2.0": ["doduo", "swalot"]}}, "Avogadro2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Avogadro2/1.97.0-linux-x86_64": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "awscli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"awscli/2.11.21-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Bambi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Bambi/0.7.1-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "bamFilters": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"bamFilters/2022-06-30-GCC-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "BamTools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BamTools/2.5.1-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BamTools/2.5.2-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BamTools/2.5.2-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BamTools/2.5.2-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BamTools/2.5.1-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BamTools/2.5.1-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BamTools/2.5.1-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Bandage": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Bandage/0.9.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Bandage/0.8.1_Centos": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "barrnap": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"barrnap/0.9-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "barrnap/0.9-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "BayesAss3-SNPs": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"BayesAss3-SNPs/1.1-2022.02.19-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "BayesPrism": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BayesPrism/2.0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Bazel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Bazel/3.7.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bazel/3.7.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bazel/3.7.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bazel/5.1.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bazel/0.26.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Bazel/0.29.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Bazel/2.0.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Bazel/2.0.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bazel/3.6.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Bazel/3.4.1-GCCcore-8.3.0": ["donphan", "joltik", "skitty", "victini"], "Bazel/4.2.2-GCCcore-11.2.0": ["gallade"]}}, "BBMap": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BBMap/38.98-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BBMap/39.01-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BBMap/38.87-iccifort-2020.1.217": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "bcbio-gff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"bcbio-gff/0.7.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "BCFtools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BCFtools/1.11-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BCFtools/1.12-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BCFtools/1.14-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BCFtools/1.15.1-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BCFtools/1.10.2-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "BCFtools/1.10.2-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"], "BCFtools/1.12-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"]}}, "bcgTree": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"bcgTree/1.2.0-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "bcl-convert": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"bcl-convert/4.0.3-2el7.x86_64": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "bcl2fastq2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"bcl2fastq2/2.20.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "bcl2fastq2/2.20.0-GCC-8.3.0": ["doduo", "donphan", "joltik"]}}, "BDBag": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"BDBag/1.6.3-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "beagle-lib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"beagle-lib/3.1.2-GCC-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "beagle-lib/3.1.2-gcccuda-2019b": ["accelgor", "joltik"], "beagle-lib/4.0.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "beagle-lib/3.1.2-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Beast": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Beast/1.10.4-gcccuda-2019b": ["accelgor", "joltik"], "Beast/1.10.5pre1-GCC-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Beast/2.7.3-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Beast/2.6.4-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"]}}, "BeautifulSoup": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BeautifulSoup/4.10.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BeautifulSoup/4.10.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BeautifulSoup/4.10.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "BEDOPS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BEDOPS/2.4.41-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "BEDTools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BEDTools/2.30.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BEDTools/2.30.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BEDTools/2.30.0-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BEDTools/2.29.2-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BEDTools/2.29.2-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BEDTools/2.30.0-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BEDTools/2.19.1-GCC-8.3.0": ["skitty", "victini"]}}, "BigDFT": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"BigDFT/1.9.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "binutils": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"binutils/2.32-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.32": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.34-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.34": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.35-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.35": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.36.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.36.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.37-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.37": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.38-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.38": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.39-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.39": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.40-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.40": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "binutils/2.31.1-GCCcore-8.2.0": ["doduo", "swalot"], "binutils/2.31.1": ["doduo", "skitty", "swalot", "victini"], "binutils/2.28": ["skitty", "victini"], "binutils/2.30": ["skitty", "victini"]}}, "Bio-DB-HTS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Bio-DB-HTS/3.01-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Bio-DB-HTS/3.01-GCC-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "biobambam2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"biobambam2/2.0.87-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "biogeme": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"biogeme/3.2.6-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "biogeme/3.2.10-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "biom-format": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"biom-format/2.1.12-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "biom-format/2.1.14-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "biom-format/2.1.15-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "BioPerl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BioPerl/1.7.8-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BioPerl/1.7.8-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BioPerl/1.7.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BioPerl/1.7.7-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BioPerl/1.7.8-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Biopython": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Biopython/1.76-foss-2021b-Python-2.7.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Biopython/1.78-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Biopython/1.78-fosscuda-2020b": ["accelgor", "joltik"], "Biopython/1.79-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Biopython/1.79-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Biopython/1.79-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Biopython/1.81-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Biopython/1.75-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "Biopython/1.75-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Biopython/1.75-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "Biopython/1.76-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Biopython/1.78-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Biopython/1.78-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Biopython/1.78-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Bismark": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Bismark/0.23.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Bison": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Bison/3.3.2-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bison/3.3.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bison/3.5.3-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bison/3.5.3": ["accelgor", "doduo", "donphan", "joltik", "swalot"], "Bison/3.7.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bison/3.7.1": ["accelgor", "doduo", "donphan", "joltik", "swalot"], "Bison/3.7.6-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bison/3.7.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bison/3.7.6": ["accelgor", "doduo", "donphan", "joltik", "swalot"], "Bison/3.8.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bison/3.8.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bison/3.8.2-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bison/3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bison/3.0.5-GCCcore-8.2.0": ["doduo", "swalot"], "Bison/3.0.5": ["doduo", "skitty", "swalot", "victini"], "Bison/3.0.4": ["skitty", "swalot", "victini"]}}, "BLAST+": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BLAST+/2.11.0-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BLAST+/2.12.0-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BLAST+/2.13.0-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BLAST+/2.14.0-gompi-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BLAST+/2.9.0-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BLAST+/2.9.0-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "BLAST+/2.10.1-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BLAST+/2.10.1-iimpi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BLAST+/2.11.0-gompi-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "BLAT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BLAT/3.7-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BLAT/3.5-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "BLAT/3.5-GCC-9.3.0": ["doduo", "donphan", "joltik", "swalot"]}}, "Blender": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Blender/3.3.1-linux-x86_64-CUDA-11.7.0": ["accelgor", "joltik"], "Blender/3.3.1-linux-x86_64": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Blender/3.5.0-linux-x86_64-CUDA-11.7.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Blender/2.81-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "Blender/2.81-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "BLIS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BLIS/0.8.1-GCC-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BLIS/0.8.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BLIS/0.9.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BLIS/0.9.0-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BLIS/0.9.0-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BLIS/0.8.0-GCCcore-10.2.0": ["doduo"]}}, "Blosc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Blosc/1.17.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Blosc/1.21.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Blosc/1.21.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Blosc/1.21.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Blosc/1.17.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Blosc/1.21.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Blosc2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Blosc2/2.6.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "bokeh": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"bokeh/2.2.3-fosscuda-2020b": ["accelgor", "joltik"], "bokeh/2.4.1-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "bokeh/2.4.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bokeh/2.4.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bokeh/1.4.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "bokeh/1.4.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "bokeh/2.0.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "bokeh/2.0.2-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "bokeh/2.2.3-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bokeh/2.2.3-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Boost.MPI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Boost.MPI/1.77.0-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Boost.MPI/1.79.0-gompi-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Boost.Python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Boost.Python/1.77.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Boost.Python/1.79.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Boost.Python/1.71.0-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Boost.Python/1.72.0-iimpi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Boost": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Boost/1.71.0-gompi-2019b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Boost/1.72.0-iimpi-2020a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Boost/1.74.0-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Boost/1.76.0-GCC-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Boost/1.77.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Boost/1.77.0-intel-compilers-2021.4.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Boost/1.79.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Boost/1.79.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Boost/1.81.0-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Boost/1.71.0-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "Boost/1.72.0-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Boost/1.72.0-iompi-2020a": ["doduo"], "Boost/1.74.0-iccifort-2020.4.304": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Boost/1.76.0-intel-compilers-2021.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "boto3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"boto3/1.20.13-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "boto3/1.20.13-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "boto3/1.26.163-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Bowtie": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Bowtie/1.3.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Bowtie/1.3.1-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bowtie/1.2.3-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Bowtie/1.2.3-iccifort-2019.5.281": ["doduo"], "Bowtie/1.3.0-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"]}}, "Bowtie2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Bowtie2/2.4.4-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Bowtie2/2.4.5-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Bowtie2/2.3.5.1-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Bowtie2/2.3.5.1-iccifort-2019.5.281": ["doduo"], "Bowtie2/2.4.1-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Bowtie2/2.4.2-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Bracken": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Bracken/2.7-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "BRAKER": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BRAKER/2.1.6-foss-2020b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BRAKER/2.1.6-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BRAKER/2.1.5-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Brotli-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Brotli-python/1.0.9-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Brotli-python/1.0.9-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Brotli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Brotli/1.0.9-GCCcore-10.2.0": ["accelgor", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Brotli/1.0.9-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Brotli/1.0.9-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Brotli/1.0.9-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Brotli/1.0.9-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Brotli/1.0.9-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Brunsli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Brunsli/0.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Brunsli/0.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "build": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"build/0.10.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "buildingspy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"buildingspy/4.0.0-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "BUSCO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BUSCO/5.4.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BUSCO/4.0.5-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "BUSCO/4.0.6-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "victini"], "BUSCO/4.1.2-foss-2020b": ["doduo", "donphan", "joltik", "skitty", "victini"], "BUSCO/5.1.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "swalot"]}}, "bwa-meth": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"bwa-meth/0.2.6-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bwa-meth/0.2.2-iccifort-2019.5.281": ["doduo"]}}, "BWA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"BWA/0.7.17-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BWA/0.7.17-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BWA/0.7.17-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BWA/0.7.17-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "BWA/0.7.17-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "BWA/0.7.17-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "BWA/0.7.17-iccifort-2019.5.281": ["doduo"]}}, "bwidget": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"bwidget/1.9.15-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "bx-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"bx-python/0.8.13-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "bx-python/0.9.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bx-python/0.8.9-foss-2020a-Python-3.8.2": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "bzip2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"bzip2/1.0.8-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bzip2/1.0.8-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bzip2/1.0.8-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bzip2/1.0.8-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bzip2/1.0.8-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bzip2/1.0.8-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bzip2/1.0.8-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bzip2/1.0.8-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "bzip2/1.0.6-GCCcore-8.2.0": ["doduo", "swalot"]}}, "c-ares": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"c-ares/1.18.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "c-ares/1.17.2-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "cairo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cairo/1.16.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "cairo/1.16.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cairo/1.16.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cairo/1.16.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cairo/1.16.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cairo/1.17.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cairo/1.17.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Cantera": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Cantera/2.6.0-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "canu": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"canu/2.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "canu/2.1.1-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "canu/2.2-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "canu/1.9-GCCcore-8.3.0-Java-11": ["donphan", "joltik"]}}, "CapnProto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CapnProto/0.9.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CapnProto/0.8.0-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "skitty", "swalot", "victini"]}}, "Cartopy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Cartopy/0.20.3-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Cartopy/0.20.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Cartopy/0.18.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Cartopy/0.19.0.post1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Cartopy/0.19.0.post1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Casanovo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Casanovo/3.3.0-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "Casanovo/3.3.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CASPR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CASPR/20200730-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CatLearn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CatLearn/0.6.2-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CatMAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CatMAP/20220519-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ccache": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ccache/4.6.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CCL": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CCL/1.12.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "cctbx-base": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cctbx-base/2020.8-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cctbx-base/2020.8-fosscuda-2020b": ["accelgor", "joltik"], "cctbx-base/2023.5-foss-2022a": ["donphan", "joltik"]}}, "CD-HIT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CD-HIT/4.8.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CD-HIT/4.8.1-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CD-HIT/4.8.1-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CD-HIT/4.8.1-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CD-HIT/4.8.1-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "CDBtools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CDBtools/0.99-GCC-10.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "cdo-bindings": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cdo-bindings/1.5.7-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CDO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CDO/1.9.10-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CDO/2.0.5-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CDO/1.9.8-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "cdsapi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"cdsapi/0.5.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "CellOracle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CellOracle/0.12.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Cellpose": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Cellpose/2.2.2-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "Cellpose/2.2.2-foss-2022a": ["accelgor", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CellProfiler": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CellProfiler/4.2.4-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "CellRanger-ATAC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CellRanger-ATAC/2.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CellRanger-ATAC/2.0.0": ["doduo", "donphan", "joltik", "swalot"]}}, "CellTypist": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CellTypist/1.0.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Cereal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Cereal/1.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CESM-deps": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CESM-deps/2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "cffi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cffi/1.15.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CFITSIO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CFITSIO/3.49-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CFITSIO/4.1.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CFITSIO/4.2.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CFITSIO/4.2.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CFITSIO/3.47-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "CGAL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CGAL/4.14.1-foss-2019b-Python-3.7.4": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CGAL/4.14.3-gompi-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CGAL/4.14.3-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CGAL/4.14.3-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CGAL/5.2-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CGAL/4.14.1-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CGAL/4.14.3-gompi-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CGAL/4.14.3-iimpi-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CGAL/5.2-iimpi-2020b": ["doduo"]}}, "CharLS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CharLS/2.4.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Check": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Check/0.15.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CheckM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CheckM/1.1.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CheckM/1.0.18-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CheckM/1.1.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "CheckM/1.1.2-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "CheckM/1.1.3-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "chemprop": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"chemprop/1.5.2-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "chemprop/1.5.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Chimera": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Chimera/1.16-linux_x86_64": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "cicero": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cicero/1.3.8-foss-2022a-R-4.2.1-Monocle3": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cicero/1.3.4.11-foss-2020b-R-4.0.3-Monocle3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Circuitscape": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Circuitscape/5.12.3-Julia-1.7.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Clang": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Clang/9.0.1-GCC-8.3.0-CUDA-10.1.243": ["accelgor", "joltik"], "Clang/12.0.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Clang/12.0.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Clang/13.0.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Clang/15.0.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Clang/16.0.6-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Clang/9.0.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Clang/10.0.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Clang/11.0.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Clang/11.0.1-gcccuda-2020b": ["joltik"]}}, "CLHEP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CLHEP/2.4.4.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CLHEP/2.4.5.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CLHEP/2.4.5.3-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CLHEP/2.4.6.4-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CLHEP/2.4.1.3-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Clp": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Clp/1.17.7-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Clustal-Omega": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Clustal-Omega/1.2.4-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Clustal-Omega/1.2.4-intel-compilers-2021.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "CMake": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CMake/3.12.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.15.3-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.16.4-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.18.4-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.20.1-GCCcore-10.2.0": ["accelgor"], "CMake/3.20.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.21.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.22.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.23.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.24.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.24.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.26.3-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CMake/3.11.4-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CMake/3.13.3-GCCcore-8.2.0": ["doduo", "swalot"]}}, "CMAverse": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CMAverse/20220112-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "CmdStanR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CmdStanR/0.5.0-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CmdStanR/0.5.2-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CMSeq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CMSeq/1.0.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CodAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CodAn/1.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "code-server": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"code-server/4.9.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CoinUtils": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CoinUtils/2.11.6-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ColabFold": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"ColabFold/1.5.2-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "ColabFold/1.5.2-foss-2022a": ["donphan", "joltik"]}}, "colossalai": {"clusters": ["accelgor", "joltik"], "versions": {"colossalai/0.1.8-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"]}}, "CompareM": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CompareM/0.1.2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Compress-Raw-Zlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Compress-Raw-Zlib/2.202-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "conan": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"conan/1.58.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "cooler": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cooler/0.9.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CoordgenLibs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CoordgenLibs/3.0.1-iimpi-2020a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CopyKAT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CopyKAT/1.1.0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CP2K": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CP2K/9.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CP2K/2022.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CP2K/2023.1-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CP2K/5.1-foss-2020a": ["doduo"], "CP2K/5.1-intel-2019b": ["doduo"], "CP2K/5.1-intel-2020a-O1": ["doduo"], "CP2K/5.1-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CP2K/5.1-iomkl-2020a": ["doduo"], "CP2K/6.1-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CP2K/7.1-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CP2K/7.1-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CP2K/8.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "swalot"], "CP2K/8.2-foss-2021a": ["doduo", "donphan", "gallade", "joltik", "swalot"]}}, "CPC2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CPC2/1.0.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CPLEX": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CPLEX/12.10-GCCcore-8.3.0-Python-3.7.4": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "cppy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cppy/1.1.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cppy/1.1.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cppy/1.2.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cppy/1.2.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "cryoDRGN": {"clusters": ["accelgor", "joltik"], "versions": {"cryoDRGN/0.3.5-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "cryoDRGN/1.0.0-beta-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"]}}, "cryptography": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cryptography/41.0.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CUDA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CUDA/10.1.243-GCC-8.3.0": ["accelgor", "joltik"], "CUDA/11.1.1-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CUDA/11.3.1": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CUDA/11.4.1": ["accelgor", "joltik"], "CUDA/11.7.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CUDA/10.1.243-iccifort-2019.5.281": ["joltik"], "CUDA/11.0.2-iccifort-2020.1.217": ["joltik"], "CUDA/11.1.1-iccifort-2020.4.304": ["joltik"]}}, "CUDAcore": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CUDAcore/11.1.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CUDAcore/11.2.1": ["accelgor", "donphan", "joltik"], "CUDAcore/11.0.2": ["joltik"]}}, "cuDNN": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"cuDNN/8.0.4.30-CUDA-11.1.1": ["accelgor", "joltik", "skitty", "victini"], "cuDNN/8.2.1.32-CUDA-11.3.1": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "cuDNN/8.2.2.26-CUDA-11.4.1": ["accelgor", "joltik"], "cuDNN/8.4.1.50-CUDA-11.7.0": ["accelgor", "donphan", "joltik"]}}, "CUnit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CUnit/2.1-3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "cURL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cURL/7.66.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cURL/7.69.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cURL/7.72.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cURL/7.76.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cURL/7.78.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cURL/7.83.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cURL/7.86.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cURL/8.0.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cURL/7.63.0-GCCcore-8.2.0": ["doduo", "swalot"]}}, "cutadapt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cutadapt/3.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "cutadapt/4.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cutadapt/1.18-GCC-10.2.0-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "cutadapt/1.18-GCCcore-8.3.0-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "cutadapt/1.18-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "cutadapt/2.7-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "cutadapt/2.10-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "cutadapt/3.4-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "cuteSV": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cuteSV/2.0.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CVXOPT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CVXOPT/1.3.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CVXOPT/1.2.4-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "cython-blis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cython-blis/0.9.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Cython": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Cython/0.29.22-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Cython/0.29.33-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Dakota": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Dakota/6.16.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "DALI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DALI/2.1.2-foss-2022b-R-4.2.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "DAS_Tool": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"DAS_Tool/1.1.1-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "dask": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"dask/2021.2.0-fosscuda-2020b": ["accelgor", "joltik"], "dask/2021.9.1-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "dask/2022.1.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "dask/2022.10.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "dask/2.8.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "dask/2.8.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "dask/2.18.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "dask/2.18.1-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "dask/2021.2.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "dask/2021.2.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "DB": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DB/18.1.32-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DB/18.1.32-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DB/18.1.40-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DB/18.1.40-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DB/18.1.40-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DB/18.1.40-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DB/18.1.40-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DB/18.1.32-GCCcore-8.2.0": ["doduo", "swalot"]}}, "DB_File": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DB_File/1.857-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DB_File/1.858-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DB_File/1.835-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "DB_File/1.855-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "DBD-mysql": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DBD-mysql/4.050-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "DBD-mysql/4.050-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "DBG2OLC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DBG2OLC/20200724-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "dbus-glib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"dbus-glib/0.112-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "dbus-glib/0.112-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "DBus": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DBus/1.13.12-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "DBus/1.13.18-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DBus/1.13.18-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DBus/1.13.18-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DBus/1.14.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DBus/1.15.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DBus/1.13.12-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "dclone": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"dclone/2.3-0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "deepdiff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"deepdiff/5.8.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "deepTools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"deepTools/3.5.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "deepTools/3.3.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "DendroPy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DendroPy/4.5.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "DendroPy/4.5.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DendroPy/4.4.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "DendroPy/4.4.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "DendroPy/4.5.2-GCCcore-10.2.0-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DendroPy/4.5.2-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "DensPart": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DensPart/20220603-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Deprecated": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Deprecated/1.2.13-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "detectron2": {"clusters": ["accelgor", "joltik"], "versions": {"detectron2/0.6-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"]}}, "DIA-NN": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"DIA-NN/1.8.1": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "DIALOGUE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DIALOGUE/1.0-20230228-foss-2021b-R-4.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "DIAMOND": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DIAMOND/2.0.7-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DIAMOND/2.0.13-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DIAMOND/2.1.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DIAMOND/2.1.8-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DIAMOND/0.9.30-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "DIAMOND/0.9.30-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"], "DIAMOND/2.0.6-GCC-10.2.0": ["doduo"], "DIAMOND/2.0.11-GCC-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "DiCE-ML": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DiCE-ML/0.9-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "dicom2nifti": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"dicom2nifti/2.3.0-fosscuda-2020b": ["accelgor", "joltik"], "dicom2nifti/2.3.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "dill": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"dill/0.3.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "dill/0.3.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "dill/0.3.6-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "dill/0.3.3-GCCcore-9.3.0": ["doduo", "donphan", "skitty", "swalot", "victini"], "dill/0.3.3-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "dm-haiku": {"clusters": ["accelgor", "joltik"], "versions": {"dm-haiku/0.0.9-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"]}}, "dm-tree": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"dm-tree/0.1.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "dm-tree/0.1.6-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "dm-tree/0.1.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "dm-tree/0.1.8-GCCcore-11.3.0": ["donphan", "joltik"]}}, "dorado": {"clusters": ["accelgor", "joltik"], "versions": {"dorado/0.1.1-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "dorado/0.3.0-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "dorado/0.3.1-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"]}}, "double-conversion": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"double-conversion/3.1.4-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "double-conversion/3.1.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "double-conversion/3.1.5-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "double-conversion/3.1.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "double-conversion/3.2.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "double-conversion/3.2.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "double-conversion/3.1.5-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "DoubletFinder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DoubletFinder/2.0.3-20230131-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DoubletFinder/2.0.3-foss-2020a-R-4.0.0": ["donphan", "joltik"]}}, "Doxygen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Doxygen/1.8.16-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Doxygen/1.8.20-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Doxygen/1.9.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Doxygen/1.9.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Doxygen/1.9.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Doxygen/1.9.5-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Doxygen/1.9.7-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Doxygen/1.8.17-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "DRAGMAP": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"DRAGMAP/1.3.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "DualSPHysics": {"clusters": ["accelgor", "joltik"], "versions": {"DualSPHysics/5.0.175-GCC-11.2.0-CUDA-11.4.1": ["accelgor", "joltik"]}}, "DUBStepR": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"DUBStepR/1.2.0-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "duplex-tools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"duplex-tools/0.3.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "duplex-tools/0.3.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "DyMat": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"DyMat/0.7-foss-2021b-2020-12-12": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "EasyBuild": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"EasyBuild/4.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.2.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.3.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.3.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.3.3": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.3.4": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.4.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.4.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.4.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.5.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.5.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.5.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.5.3": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.5.4": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.5.5": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.6.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.6.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.6.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.7.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.7.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "EasyBuild/4.8.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ecCodes": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ecCodes/2.22.1-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ecCodes/2.24.2-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ecCodes/2.15.0-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "edlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"edlib/1.3.9-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "edlib/1.3.9-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "edlib/1.3.9-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "edlib/1.3.8.post1-GCC-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "edlib/1.3.8.post1-GCC-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "edlib/1.3.8.post1-iccifort-2019.5.281-Python-3.7.4": ["doduo", "donphan", "joltik"], "edlib/1.3.8.post2-iccifort-2020.1.217-Python-3.8.2": ["doduo", "donphan", "joltik"], "edlib/1.3.9-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "eggnog-mapper": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"eggnog-mapper/2.1.10-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "eggnog-mapper/2.1.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Eigen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Eigen/3.3.7-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Eigen/3.3.7": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Eigen/3.3.8-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Eigen/3.3.9-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Eigen/3.3.9-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Eigen/3.4.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Eigen/3.4.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Eigen/3.4.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Eigen/3.4.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Eigen/3.3.9-GCCcore-10.2.0": ["donphan", "gallade", "joltik", "skitty", "victini"]}}, "einops": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"einops/0.4.1-GCCcore-10.3.0": ["accelgor", "donphan", "joltik"], "einops/0.4.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "elfutils": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"elfutils/0.185-GCCcore-8.3.0": ["accelgor", "joltik"], "elfutils/0.185-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "elfutils/0.185-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "elfutils/0.187-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "elfutils/0.183-GCCcore-10.2.0": ["donphan", "gallade", "joltik"]}}, "ELPA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ELPA/2021.05.001-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ELPA/2021.05.001-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ELPA/2019.11.001-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "ELPA/2019.11.001-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "ELPA/2020.11.001-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ELPA/2021.05.001-intel-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "EMBOSS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"EMBOSS/6.6.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "EMBOSS/6.6.0-GCC-8.3.0-Java-11": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "enchant-2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"enchant-2/2.3.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "epiScanpy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"epiScanpy/0.4.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "epiScanpy/0.3.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "EpiSCORE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"EpiSCORE/0.9.5-20220621-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ESM-2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ESM-2/2.0.0-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ESMF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ESMF/8.2.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ESMF/8.0.0-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ESMF/8.0.1-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ESMF/8.0.1-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ESMF/8.1.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ETE": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ETE/3.1.2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "exiv2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"exiv2/0.27.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "exiv2/0.27.4-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Exonerate": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Exonerate/2.4.0-GCC-10.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Exonerate/2.4.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Exonerate/2.4.0-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Exonerate/2.4.0-GCC-8.3.0": ["doduo", "donphan", "joltik"], "Exonerate/2.4.0-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "expat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"expat/2.2.7-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "expat/2.2.9-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "expat/2.2.9-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "expat/2.2.9-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "expat/2.4.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "expat/2.4.8-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "expat/2.4.9-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "expat/2.5.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "expat/2.2.6-GCCcore-8.2.0": ["doduo", "swalot"]}}, "expecttest": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"expecttest/0.1.3-GCCcore-10.2.0": ["accelgor"], "expecttest/0.1.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "expecttest/0.1.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "expecttest/0.1.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Faiss": {"clusters": ["accelgor", "joltik"], "versions": {"Faiss/1.7.2-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"]}}, "fastai": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"fastai/2.7.10-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FastANI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FastANI/1.33-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FastANI/1.33-intel-compilers-2021.4.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FastANI/1.3-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"], "FastANI/1.31-iccifort-2020.1.217": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FastANI/1.33-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"], "FastANI/1.33-iccifort-2020.4.304": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "fastp": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"fastp/0.23.2-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "fastp/0.20.0-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "fastp/0.20.0-iccifort-2019.5.281": ["doduo"], "fastp/0.20.1-iccifort-2020.1.217": ["doduo", "donphan", "joltik"]}}, "FastQ_Screen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FastQ_Screen/0.14.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FastQC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FastQC/0.11.9-Java-11": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FastTree": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FastTree/2.1.11-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FastTree/2.1.11-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FastTree/2.1.11-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "FastTree/2.1.11-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FastTree/2.1.11-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FASTX-Toolkit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FASTX-Toolkit/0.0.14-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FASTX-Toolkit/0.0.14-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "FDS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FDS/6.7.7-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FDS/6.7.9-intel-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FDS/6.7.4-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FDS/6.7.5-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FDS/6.7.6-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FDS/6.7.5-intel-2020b": ["donphan", "joltik"]}}, "FFmpeg": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FFmpeg/4.2.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FFmpeg/4.3.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFmpeg/4.3.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFmpeg/4.3.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFmpeg/4.4.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFmpeg/4.2.2-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ffnvcodec": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ffnvcodec/11.1.5.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FFTW.MPI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FFTW.MPI/3.3.10-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFTW.MPI/3.3.10-gompi-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFTW.MPI/3.3.10-gompi-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FFTW": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FFTW/3.3.8-gompi-2019b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.8-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.8-gompic-2020b": ["accelgor", "joltik"], "FFTW/3.3.9-gompi-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.10-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.10-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.10-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.10-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.8-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.8-iimpi-2020b": ["doduo"], "FFTW/3.3.8-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.8-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.8-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.8-iomkl-2020a": ["doduo"], "FFTW/3.3.9-intel-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FFTW/3.3.8-intelcuda-2020b": ["joltik"]}}, "Fiji": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Fiji/2.9.0-Java-1.8": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "file": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"file/5.41-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "file/5.43-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "file/5.38-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "file/5.38-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "file/5.39-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "finder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"finder/1.1.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Fiona": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Fiona/1.8.21-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Fiona/1.8.21-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Fiona/1.9.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Fiona/1.8.16-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Fiona/1.8.20-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Fiona/1.8.20-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Fiona/1.8.13-intel-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"]}}, "FLAC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FLAC/1.3.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FLAC/1.3.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FLAC/1.3.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FLAC/1.4.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FLAC/1.3.3-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "flair-NLP": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"flair-NLP/0.11.3-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "flair-NLP/0.11.3-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "FLASH": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FLASH/2.2.00-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FLASH/1.2.11-GCC-8.3.0": ["doduo", "donphan", "joltik"], "FLASH/2.2.00-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Flask": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Flask/1.1.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Flask/2.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Flask/2.2.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Flask/1.1.2-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "flatbuffers-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"flatbuffers-python/1.12-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flatbuffers-python/2.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flatbuffers-python/2.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flatbuffers-python/2.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "flatbuffers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"flatbuffers/1.12.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flatbuffers/2.0.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "flatbuffers/2.0.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flatbuffers/2.0.7-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flatbuffers/1.12.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "flatbuffers/1.12.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "flex": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"flex/2.6.4-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flex/2.6.4-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flex/2.6.4-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flex/2.6.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flex/2.6.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flex/2.6.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flex/2.6.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flex/2.6.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flex/2.6.4": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "flex/2.5.39-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "flex/2.6.4-GCCcore-8.2.0": ["doduo", "swalot"], "flex/2.6.3": ["skitty", "victini"]}}, "FlexiBLAS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FlexiBLAS/3.0.4-GCC-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FlexiBLAS/3.0.4-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FlexiBLAS/3.2.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FlexiBLAS/3.2.1-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FlexiBLAS/3.3.1-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "flit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"flit/3.9.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "flowFDA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"flowFDA/0.99-20220602-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FLUENT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FLUENT/2023R1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FLUENT/2019R3": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FLUENT/2021R2": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FLUENT/2022R1": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "fmt": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"fmt/7.1.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "fmt/8.1.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "fontconfig": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"fontconfig/2.13.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "fontconfig/2.13.92-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "fontconfig/2.13.92-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "fontconfig/2.13.93-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "fontconfig/2.13.94-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "fontconfig/2.14.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "fontconfig/2.14.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "fontconfig/2.14.2-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "fontconfig/2.13.1-GCCcore-8.2.0": ["doduo", "swalot"]}}, "foss": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"foss/2019b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "foss/2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "foss/2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "foss/2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "foss/2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "foss/2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "foss/2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "foss/2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "fosscuda": {"clusters": ["accelgor", "joltik"], "versions": {"fosscuda/2020b": ["accelgor", "joltik"]}}, "FragGeneScan": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FragGeneScan/1.31-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FragGeneScan/1.31-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FreeBarcodes": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"FreeBarcodes/3.0.a5-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "freeglut": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"freeglut/3.2.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "freeglut/3.2.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "freeglut/3.2.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "freeglut/3.2.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "freeglut/3.2.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "freeglut/3.2.1-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "FreeSurfer": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"FreeSurfer/7.3.2-centos8_x86_64": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FreeSurfer/7.2.0-centos8_x86_64": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "freetype": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"freetype/2.10.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "freetype/2.10.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "freetype/2.10.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "freetype/2.10.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "freetype/2.11.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "freetype/2.12.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "freetype/2.12.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "freetype/2.13.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "freetype/2.9.1-GCCcore-8.2.0": ["doduo", "swalot"]}}, "FreeXL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FreeXL/1.0.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FriBidi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FriBidi/1.0.5-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FriBidi/1.0.10-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FriBidi/1.0.10-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FriBidi/1.0.10-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FriBidi/1.0.12-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FriBidi/1.0.12-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FriBidi/1.0.9-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "FSL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FSL/6.0.7.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FSL/6.0.3-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "FSL/6.0.5.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "funannotate": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"funannotate/1.8.13-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GapFiller": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GapFiller/2.1.2-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GAPPadder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GAPPadder/20170601-foss-2021b-Python-2.7.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GATB-Core": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GATB-Core/1.4.2-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GATE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GATE/9.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GATE/9.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GATE/9.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GATE/9.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "GATK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GATK/4.3.0.0-GCCcore-11.3.0-Java-11": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GATK/4.1.8.1-GCCcore-9.3.0-Java-1.8": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GATK/4.2.0.0-GCCcore-10.2.0-Java-11": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Gaussian": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Gaussian/g16_C.01-iimpi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Gaussian/g16_C.01-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "gbasis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gbasis/20210904-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Gblocks": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Gblocks/0.91b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GBprocesS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GBprocesS/4.0.0.post1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GBprocesS/2.3-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "gc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gc/8.2.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gc/7.6.12-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "gc/7.6.12-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gc/8.0.4-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GCC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GCC/8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCC/10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCC/10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCC/11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCC/11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCC/12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCC/12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCC/9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GCCcore": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GCCcore/8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCCcore/9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCCcore/10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCCcore/10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCCcore/11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCCcore/11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCCcore/12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCCcore/12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GCCcore/8.2.0": ["doduo", "swalot"]}}, "gcccuda": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gcccuda/2019b": ["accelgor", "joltik"], "gcccuda/2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GConf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GConf/3.2.6-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GConf/3.2.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GDAL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GDAL/3.3.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GDAL/3.5.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GDAL/3.6.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GDAL/3.0.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "GDAL/3.0.4-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GDAL/3.2.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GDAL/3.2.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GDAL/3.3.0-foss-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GDAL/3.0.2-intel-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"], "GDAL/3.2.1-fosscuda-2020b": ["joltik"]}}, "gdc-client": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty", "swalot", "victini"], "versions": {"gdc-client/1.6.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "skitty", "swalot", "victini"]}}, "GDCM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GDCM/3.0.21-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GDGraph": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GDGraph/1.56-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Gdk-Pixbuf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Gdk-Pixbuf/2.42.6-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Gdk-Pixbuf/2.42.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Gdk-Pixbuf/2.42.8-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Gdk-Pixbuf/2.42.10-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Gdk-Pixbuf/2.38.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Gdk-Pixbuf/2.40.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GDRCopy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GDRCopy/2.1-GCCcore-10.2.0-CUDA-11.1.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GDRCopy/2.1-GCCcore-10.2.0-CUDA-11.2.1": ["accelgor", "donphan", "joltik"], "GDRCopy/2.2-GCCcore-10.3.0": ["accelgor", "joltik"], "GDRCopy/2.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GDRCopy/2.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Geant4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Geant4/10.7.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Geant4/11.0.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Geant4/11.0.2-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Geant4/11.0.2-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Geant4/10.6-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "GeneMark-ET": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GeneMark-ET/4.65-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GeneMark-ET/4.71-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GeneMark-ET/4.71-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GeneMark-ET/4.57-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "genomepy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"genomepy/0.15.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GenomeThreader": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GenomeThreader/1.7.3-Linux_x86_64-64bit": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "genozip": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"genozip/13.0.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "gensim": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gensim/4.2.0-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gensim/3.8.3-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gensim/3.8.3-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "geopandas": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"geopandas/0.12.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "geopandas/0.8.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "geopandas/0.8.1-intel-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"]}}, "GEOS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GEOS/3.9.1-GCC-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GEOS/3.9.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GEOS/3.10.3-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GEOS/3.11.1-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GEOS/3.8.0-GCC-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "GEOS/3.8.0-iccifort-2019.5.281-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "GEOS/3.8.1-GCC-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GEOS/3.9.1-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GEOS/3.9.1-iccifort-2020.4.304": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GetOrganelle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GetOrganelle/1.7.5.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GetOrganelle/1.7.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GetOrganelle/1.7.4-pre2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "gettext": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gettext/0.19.8.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.20.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gettext/0.20.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.20.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.21-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.21-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.21-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.21-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.21": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.21.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.21.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.21.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gettext/0.19.8.1-GCCcore-8.2.0": ["doduo", "swalot"]}}, "gfbf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gfbf/2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gfbf/2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GffCompare": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GffCompare/0.12.6-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GffCompare/0.11.6-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "gffread": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gffread/0.12.7-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "gffutils": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gffutils/0.12-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Ghostscript": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Ghostscript/9.53.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ghostscript/9.54.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ghostscript/9.54.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ghostscript/9.56.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ghostscript/10.0.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ghostscript/9.50-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Ghostscript/9.52-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "giflib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"giflib/5.2.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "giflib/5.2.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "giflib/5.2.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "giflib/5.2.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "giflib/5.2.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "giflib/5.2.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "giflib/5.2.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GimmeMotifs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GimmeMotifs/0.17.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Giotto-Suite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Giotto-Suite/3.0.1-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "git-lfs": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"git-lfs/3.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "git": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"git/2.23.0-GCCcore-9.3.0-nodocs": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "git/2.28.0-GCCcore-10.2.0-nodocs": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "git/2.32.0-GCCcore-10.3.0-nodocs": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "git/2.33.1-GCCcore-11.2.0-nodocs": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "git/2.36.0-GCCcore-11.3.0-nodocs": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "git/2.38.1-GCCcore-12.2.0-nodocs": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "git/2.41.0-GCCcore-12.3.0-nodocs": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "git/2.23.0-GCCcore-8.3.0-nodocs": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "git/2.23.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "GitPython": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GitPython/3.1.24-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GitPython/3.1.27-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GitPython/3.1.0-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "GitPython/3.1.9-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GitPython/3.1.14-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GL2PS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GL2PS/1.4.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GL2PS/1.4.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GL2PS/1.4.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "glew": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"glew/2.1.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "glew/2.2.0-GCCcore-11.2.0-egl": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "glew/2.2.0-GCCcore-11.2.0-osmesa": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "glew/2.2.0-GCCcore-12.3.0-osmesa": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "glew/2.1.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "glew/2.1.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GLFW": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GLFW/3.3.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLFW/3.3.8-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "glib-networking": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"glib-networking/2.72.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "glib-networking/2.68.1-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GLib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GLib/2.62.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GLib/2.64.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLib/2.66.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLib/2.68.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLib/2.69.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLib/2.72.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLib/2.75.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GLIMPSE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GLIMPSE/2.0.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GLM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GLM/0.9.9.8-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLM/0.9.9.8-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GLPK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GLPK/4.65-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLPK/5.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLPK/5.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLPK/5.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLPK/5.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GLPK/4.65-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "GLPK/4.65-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GMAP-GSNAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GMAP-GSNAP/2023-02-17-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GMAP-GSNAP/2019-09-12-GCC-8.3.0": ["doduo", "donphan", "joltik"]}}, "GMP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GMP/6.1.2-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GMP/6.2.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GMP/6.2.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GMP/6.2.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GMP/6.2.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GMP/6.2.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GMP/6.2.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GMP/6.2.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GMP/6.1.2-GCCcore-8.2.0": ["doduo", "swalot"]}}, "gmpy2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gmpy2/2.1.2-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gmpy2/2.1.2-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gmpy2/2.1.2-intel-compilers-2021.4.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gmpy2/2.1.2-intel-compilers-2022.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gmpy2/2.1.0b4-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gmpy2/2.1.0b5-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gmpy2/2.1.0b5-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "gnuplot": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gnuplot/5.2.8-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gnuplot/5.4.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gnuplot/5.4.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gnuplot/5.4.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gnuplot/5.4.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gnuplot/5.2.8-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GnuTLS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GnuTLS/3.7.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GnuTLS/3.7.2-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Go": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Go/1.17.6": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Go/1.17.3": ["doduo", "donphan", "joltik", "swalot"], "Go/1.14": ["donphan", "joltik"]}}, "GOATOOLS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GOATOOLS/1.3.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GOATOOLS/1.3.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GOATOOLS/1.1.6-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GObject-Introspection": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GObject-Introspection/1.63.1-GCCcore-8.3.0-Python-3.7.4": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GObject-Introspection/1.66.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GObject-Introspection/1.68.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GObject-Introspection/1.68.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GObject-Introspection/1.72.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GObject-Introspection/1.74.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GObject-Introspection/1.64.0-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "gomkl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gomkl/2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gomkl/2020a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "gompi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gompi/2019b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gompi/2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gompi/2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gompi/2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gompi/2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gompi/2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gompi/2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gompi/2020a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "gompic": {"clusters": ["accelgor", "doduo", "joltik", "skitty", "swalot", "victini"], "versions": {"gompic/2020b": ["accelgor", "doduo", "joltik", "skitty", "swalot", "victini"]}}, "googletest": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"googletest/1.11.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "googletest/1.11.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "googletest/1.12.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "googletest/1.10.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "GPAW-setups": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GPAW-setups/0.9.20000": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GPAW": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GPAW/22.8.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GPAW/22.8.0-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GPAW/22.8.0-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GPAW/20.1.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "GPAW/20.1.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "gperf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gperf/3.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gperf/3.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gperf/3.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gperf/3.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gperf/3.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gperf/3.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gperf/3.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gperf/3.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gperf/3.1-GCCcore-8.2.0": ["doduo", "swalot"]}}, "gperftools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gperftools/2.9.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gperftools/2.10-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gperftools/2.7.90-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "GPy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"GPy/1.10.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GPyTorch": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GPyTorch/1.6.0-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "GPyTorch/1.3.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Graphene": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Graphene/1.10.8-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "graphite2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"graphite2/1.3.14-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "graphite2/1.3.14-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "graphite2/1.3.14-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "graphviz-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"graphviz-python/0.20.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Graphviz": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Graphviz/2.47.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Graphviz/2.50.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Graphviz/5.0.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Graphviz/2.42.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "Graphviz/2.42.2-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "Graphviz/2.47.0-GCCcore-10.2.0-Java-11": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GRASS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GRASS/8.2.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Greenlet": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Greenlet/2.0.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "grid": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"grid/20220610-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "groff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"groff/1.22.4-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "groff/1.22.4-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "groff/1.22.4-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "groff/1.22.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "groff/1.22.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "groff/1.22.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "groff/1.22.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "groff/1.22.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GROMACS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GROMACS/2021.2-fosscuda-2020b": ["accelgor", "joltik"], "GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2": ["accelgor", "joltik"], "GROMACS/2021.3-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "GROMACS/2019.3-foss-2019b": ["doduo", "donphan", "joltik"], "GROMACS/2019.4-foss-2019b": ["doduo", "donphan", "joltik"], "GROMACS/2020-foss-2019b": ["doduo", "donphan", "joltik"], "GROMACS/2021-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GSL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GSL/2.6-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GSL/2.7-GCC-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GSL/2.7-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GSL/2.7-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GSL/2.7-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GSL/2.7-intel-compilers-2021.4.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GSL/2.6-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GSL/2.6-GCC-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GSL/2.6-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GSL/2.6-iccifort-2020.1.217": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GSL/2.6-iccifort-2020.4.304": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GST-plugins-bad": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GST-plugins-bad/1.20.2-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GST-plugins-base": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GST-plugins-base/1.18.4-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GST-plugins-base/1.18.5-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GST-plugins-base/1.20.2-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GStreamer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GStreamer/1.18.4-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GStreamer/1.18.5-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GStreamer/1.20.2-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GTDB-Tk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"GTDB-Tk/2.0.0-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GTDB-Tk/1.0.2-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "GTDB-Tk/1.3.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GTDB-Tk/1.5.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GTDB-Tk/1.7.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GTK2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GTK2/2.24.33-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GTK2/2.24.33-GCCcore-10.3.0": ["donphan", "joltik"]}}, "GTK3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GTK3/3.24.29-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GTK3/3.24.31-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GTK3/3.24.35-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GTK4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GTK4/4.7.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GTS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GTS/0.7.6-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GTS/0.7.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GTS/0.7.6-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "GTS/0.7.6-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "GTS/0.7.6-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Guile": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Guile/3.0.7-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Guile/1.8.8-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Guile/1.8.8-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guile/2.2.7-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Guppy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Guppy/5.0.15-gpu": ["accelgor", "joltik"], "Guppy/5.0.16-gpu": ["accelgor", "joltik"], "Guppy/6.0.1-gpu": ["accelgor", "joltik"], "Guppy/6.1.2-gpu": ["accelgor", "joltik"], "Guppy/6.1.7-gpu": ["accelgor", "joltik"], "Guppy/6.3.7-gpu": ["accelgor", "joltik"], "Guppy/6.3.8-gpu": ["accelgor", "joltik"], "Guppy/6.4.2-gpu": ["accelgor", "joltik"], "Guppy/6.4.6-gpu": ["accelgor", "donphan", "joltik"], "Guppy/6.5.7-cpu": ["accelgor", "doduo", "gallade", "skitty", "swalot", "victini"], "Guppy/6.5.7-gpu": ["accelgor", "donphan", "joltik"], "Guppy/4.0.15-cpu": ["doduo", "donphan", "joltik"], "Guppy/4.2.2-cpu": ["doduo", "donphan", "joltik"], "Guppy/4.4.1-cpu": ["doduo", "donphan", "joltik"], "Guppy/5.0.7-cpu": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guppy/5.0.11-cpu": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guppy/5.0.14-cpu": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guppy/5.0.15-cpu": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guppy/5.0.16-cpu": ["doduo", "donphan", "joltik"], "Guppy/6.0.1-cpu": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guppy/6.1.2-cpu": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guppy/6.1.7-cpu": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guppy/6.3.7-cpu": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guppy/6.3.8-cpu": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guppy/6.4.2-cpu": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Guppy/6.4.6-cpu": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Guppy/3.5.2-cpu": ["donphan", "joltik"], "Guppy/5.0.7-gpu": ["joltik"], "Guppy/5.0.11-gpu": ["joltik"], "Guppy/5.0.14-gpu": ["joltik"]}}, "Gurobi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Gurobi/9.5.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Gurobi/9.5.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Gurobi/9.1.0": ["doduo", "donphan", "joltik"], "Gurobi/9.1.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GUSHR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GUSHR/2020-09-28-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "gzip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gzip/1.10-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "victini"], "gzip/1.10-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gzip/1.10-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gzip/1.10-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gzip/1.12-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gzip/1.12-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gzip/1.12-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "gzip/1.10-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "h5py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"h5py/2.10.0-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "h5py/3.1.0-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "h5py/3.1.0-fosscuda-2020b": ["accelgor", "joltik"], "h5py/3.2.1-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "h5py/3.2.1-gomkl-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "h5py/3.6.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "h5py/3.6.0-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "h5py/3.7.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "h5py/3.7.0-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "h5py/3.8.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "h5py/2.10.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "h5py/2.10.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "h5py/2.10.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "h5py/2.10.0-intel-2020a-Python-2.7.18": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "h5py/3.1.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "HarfBuzz": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HarfBuzz/2.6.4-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HarfBuzz/2.6.7-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HarfBuzz/2.8.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HarfBuzz/2.8.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HarfBuzz/4.2.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HarfBuzz/5.3.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HarfBuzz/2.6.4-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "hatchling": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"hatchling/1.18.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "HDF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HDF/4.2.15-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF/4.2.15-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF/4.2.15-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF/4.2.14-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "HDF/4.2.15-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF/4.2.15-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF/4.2.15-GCCcore-9.3.0": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "HDF5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HDF5/1.10.5-gompi-2019b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HDF5/1.10.6-iimpi-2020a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF5/1.10.7-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF5/1.10.7-gompi-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF5/1.10.7-gompic-2020b": ["accelgor", "joltik"], "HDF5/1.10.8-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HDF5/1.12.1-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF5/1.12.1-iimpi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF5/1.12.2-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF5/1.12.2-iimpi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF5/1.13.1-gompi-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HDF5/1.14.0-gompi-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF5/1.10.5-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HDF5/1.10.6-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HDF5/1.10.7-iimpi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HDF5/1.10.7-iimpi-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "help2man": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"help2man/1.47.8-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "help2man/1.47.12-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "help2man/1.47.16-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "help2man/1.48.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "help2man/1.48.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "help2man/1.49.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "help2man/1.49.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "help2man/1.49.3-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "help2man/1.47.4": ["doduo", "swalot"], "help2man/1.47.7-GCCcore-8.2.0": ["doduo", "swalot"]}}, "HH-suite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HH-suite/3.3.0-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HH-suite/3.3.0-gompi-2021b": ["accelgor", "donphan", "joltik"], "HH-suite/3.3.0-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HH-suite/3.3.0-gompic-2020b": ["accelgor", "joltik"], "HH-suite/3.2.0-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "HH-suite/3.3.0-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "HiCExplorer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HiCExplorer/3.7.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "HiCMatrix": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HiCMatrix/17-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Highway": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Highway/1.0.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Highway/1.0.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Highway/1.0.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "hiredis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"hiredis/1.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "HISAT2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HISAT2/2.2.1-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HISAT2/2.2.1-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HISAT2/2.2.1-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "histolab": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"histolab/0.4.1-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "histolab/0.4.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "HMMER": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HMMER/3.3.2-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HMMER/3.3.2-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HMMER/3.3.2-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HMMER/3.3.2-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HMMER/3.3.2-gompic-2020b": ["accelgor", "joltik"], "HMMER/3.3.2-iimpi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HMMER/3.2.1-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "HMMER/3.2.1-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "HMMER/3.3.1-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HMMER/3.3.1-iimpi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HMMER/3.3.2-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HMMER/3.3.2-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HMMER/3.3.2-iimpi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Horovod": {"clusters": ["accelgor", "joltik"], "versions": {"Horovod/0.21.1-fosscuda-2020b-TensorFlow-2.4.1": ["accelgor", "joltik"], "Horovod/0.21.3-fosscuda-2020b-PyTorch-1.7.1": ["accelgor", "joltik"], "Horovod/0.22.0-fosscuda-2020b-PyTorch-1.8.1": ["accelgor"], "Horovod/0.23.0-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0": ["accelgor"], "Horovod/0.23.0-fosscuda-2020b-TensorFlow-2.5.0": ["accelgor", "joltik"]}}, "how_are_we_stranded_here": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"how_are_we_stranded_here/1.0.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "HPL": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"HPL/2.0.15-intel-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "HPL/2.3-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "HPL/2.3-gobff-2020b": ["doduo"], "HPL/2.3-iibff-2020b": ["doduo"], "HPL/2.3-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "HTSeq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HTSeq/0.11.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HTSeq/2.0.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "HTSlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HTSlib/1.11-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HTSlib/1.12-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HTSlib/1.14-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HTSlib/1.15.1-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HTSlib/1.10.2-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HTSlib/1.10.2-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "HTSlib/1.10.2-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"], "HTSlib/1.12-GCC-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "HTSplotter": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HTSplotter/0.15-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HTSplotter/2.11-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "hunspell": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"hunspell/1.7.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "hwloc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"hwloc/1.11.12-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hwloc/2.2.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hwloc/2.4.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hwloc/2.5.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hwloc/2.7.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hwloc/2.8.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hwloc/2.9.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hwloc/2.2.0-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Hybpiper": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Hybpiper/2.1.6-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Hydra": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Hydra/1.1.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Hyperopt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Hyperopt/0.2.7-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Hyperopt/0.2.7-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "hypothesis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"hypothesis/4.57.1-GCCcore-11.2.0-Python-2.7.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hypothesis/5.41.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hypothesis/5.41.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hypothesis/6.13.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hypothesis/6.14.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hypothesis/6.46.7-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hypothesis/6.68.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hypothesis/6.82.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "hypothesis/4.44.2-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Hypre": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Hypre/2.18.2-foss-2019b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Hypre/2.24.0-intel-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Hypre/2.25.0-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Hypre/2.18.2-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Hypre/2.18.2-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "Hypre/2.20.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Hypre/2.21.0-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "iccifort": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"iccifort/2020.1.217": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "iccifort/2020.4.304": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "iccifort/2019.5.281": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ICU": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ICU/64.2-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ICU/67.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ICU/69.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ICU/69.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ICU/71.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ICU/72.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ICU/66.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "IDBA-UD": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"IDBA-UD/1.1.3-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "IDBA-UD/1.1.3-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "igraph": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"igraph/0.9.4-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "igraph/0.9.5-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "igraph/0.10.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "igraph/0.8.2-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "igraph/0.9.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "igraph/0.9.1-fosscuda-2020b": ["joltik"]}}, "iimpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"iimpi/2020a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "iimpi/2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "iimpi/2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "iimpi/2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "iimpi/2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "iimpi/2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "iimpi/2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "imagecodecs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"imagecodecs/2022.9.26-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "imageio": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"imageio/2.10.5-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "imageio/2.13.5-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "imageio/2.22.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "imageio/2.9.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "ImageMagick": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ImageMagick/7.0.10-35-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ImageMagick/7.1.0-4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ImageMagick/7.1.0-37-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ImageMagick/7.1.0-53-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ImageMagick/7.0.9-5-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ImageMagick/7.0.10-1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ImageMagick/7.0.11-14-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Imath": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Imath/3.1.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Imath/3.1.6-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "imbalanced-learn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"imbalanced-learn/0.10.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "imgaug": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"imgaug/0.4.0-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "imgaug/0.4.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "imkl-FFTW": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"imkl-FFTW/2021.4.0-iimpi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "imkl-FFTW/2022.1.0-iimpi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "imkl-FFTW/2023.1.0-iimpi-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "imkl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"imkl/2018.4.274-iimpi-2020a": ["accelgor", "doduo", "gallade"], "imkl/2018.4.274-NVHPC-21.2": ["accelgor"], "imkl/2020.0.166-iimpi-2020b": ["accelgor", "doduo", "gallade"], "imkl/2020.1.217-iimpi-2020a": ["accelgor", "donphan", "joltik", "skitty", "swalot", "victini"], "imkl/2020.4.304-iompi-2020b": ["accelgor", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "imkl/2021.2.0-gompi-2021a": ["accelgor", "donphan", "joltik", "skitty", "swalot", "victini"], "imkl/2021.4.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "imkl/2022.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "imkl/2023.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "imkl/2018.4.274-gompi-2020a": ["doduo", "gallade"], "imkl/2018.4.274-gompi-2021a": ["doduo", "gallade"], "imkl/2018.4.274-iimpi-2019b": ["doduo"], "imkl/2018.4.274-iimpi-2020b": ["doduo", "gallade"], "imkl/2018.4.274-iompi-2020a": ["doduo"], "imkl/2018.4.274-iompi-2020b": ["doduo", "gallade"], "imkl/2019.5.281-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "imkl/2020.0.166-gompi-2020a": ["doduo"], "imkl/2020.0.166-iimpi-2020a": ["doduo"], "imkl/2020.0.166-iompi-2020a": ["doduo"], "imkl/2021.2.0-iimpi-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "imkl/2020.4.304-NVHPC-21.2": ["donphan", "joltik"], "imkl/2020.1.217-gompi-2020a": ["donphan", "joltik", "skitty", "swalot", "victini"], "imkl/2020.4.304-iimpi-2020b": ["donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "imkl/2019.5.281-iimpic-2019b": ["joltik"], "imkl/2020.1.217-iimpic-2020a": ["joltik"], "imkl/2020.4.304-iimpic-2020b": ["joltik"]}}, "impi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"impi/2019.9.304-iccifort-2020.1.217": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "impi/2019.9.304-iccifort-2020.4.304": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "impi/2021.4.0-intel-compilers-2021.4.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "impi/2021.6.0-intel-compilers-2022.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "impi/2021.9.0-intel-compilers-2023.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "impi/2019.7.217-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "swalot"], "impi/2019.7.217-iccifort-2020.1.217": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "impi/2019.9.304-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "impi/2021.2.0-intel-compilers-2021.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "impi/2019.7.217-iccifortcuda-2020a": ["joltik"], "impi/2019.9.304-iccifortcuda-2020b": ["joltik"]}}, "inferCNV": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"inferCNV/1.3.3-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "inferCNV/1.12.0-foss-2021b-R-4.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "inferCNV/1.12.0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "infercnvpy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"infercnvpy/0.4.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "infercnvpy/0.4.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Inferelator": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Inferelator/0.6.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Infernal": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Infernal/1.1.4-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "intel-compilers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"intel-compilers/2021.4.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intel-compilers/2022.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intel-compilers/2023.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intel-compilers/2021.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "intel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"intel/2020a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intel/2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intel/2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intel/2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intel/2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "intel/2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intel/2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "InterProScan": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"InterProScan/5.62-94.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "InterProScan/5.52-86.0-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "intervaltree-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"intervaltree-python/3.1.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "intervaltree-python/3.1.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "intervaltree-python/3.1.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "intltool": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"intltool/0.51.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "intltool/0.51.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intltool/0.51.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intltool/0.51.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intltool/0.51.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intltool/0.51.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intltool/0.51.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intltool/0.51.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "intltool/0.51.0-GCCcore-8.2.0": ["doduo", "swalot"]}}, "iodata": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"iodata/1.0.0a2-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "iomkl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"iomkl/2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "iomkl/2020a": ["doduo"]}}, "iompi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"iompi/2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "iompi/2020a": ["doduo"], "iompi/2021a": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "IPython": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"IPython/7.15.0-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "IPython/7.18.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "IPython/7.25.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "IPython/7.26.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "IPython/8.5.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "IPython/7.9.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "IPython/7.9.0-intel-2019b-Python-3.7.4": ["doduo", "skitty", "victini"], "IPython/7.15.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "IQ-TREE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"IQ-TREE/2.2.1-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "IQ-TREE/2.2.2.3-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "IQ-TREE/2.2.2.6-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "IQ-TREE/2.2.2.6-gompi-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "IQ-TREE/1.6.12-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ISA-L": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ISA-L/2.30.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ISA-L/2.30.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ISA-L/2.30.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ISA-L/2.30.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "IsoQuant": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"IsoQuant/3.3.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "IsoSeq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"IsoSeq/3.8.2-linux-x86_64": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ITK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ITK/5.2.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ITK/5.2.1-fosscuda-2020b": ["accelgor", "joltik"], "ITK/4.13.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ITK/5.0.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "ITK/5.2.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ITK/5.1.2-fosscuda-2020b": ["joltik"]}}, "JAGS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"JAGS/4.3.0-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "JAGS/4.3.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "JAGS/4.3.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Jansson": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Jansson/2.13.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "JasPer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"JasPer/2.0.14-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "JasPer/2.0.24-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "JasPer/2.0.28-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "JasPer/2.0.33-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "JasPer/2.0.33-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "JasPer/4.0.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "JasPer/2.0.14-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Java": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Java/1.8(@Java/1.8.0_311)": ["accelgor", "donphan", "gallade", "joltik", "skitty", "victini"], "Java/1.8.0_311": ["accelgor", "donphan", "gallade", "joltik", "skitty", "victini"], "Java/11(@Java/11.0.2)": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Java/11.0.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Java/11.0.16": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Java/11.0.18": ["accelgor", "gallade", "joltik"], "Java/1.8(@Java/1.8.0_241)": ["doduo"], "Java/1.8.0_241": ["doduo"], "Java/13(@Java/13.0.2)": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Java/13.0.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Java/11(@Java/11.0.16)": ["gallade"], "Java/1.8(@Java/1.8.0_281)": ["swalot"], "Java/1.8.0_281": ["swalot"]}}, "jax": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"jax/0.2.19-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jax/0.2.19-fosscuda-2020b": ["accelgor", "joltik"], "jax/0.2.24-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "jax/0.3.9-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "jax/0.3.9-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jax/0.3.23-foss-2021b-CUDA-11.4.1": ["accelgor", "joltik"], "jax/0.3.25-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "jax/0.3.25-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jax/0.2.24-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "jbigkit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"jbigkit/2.1-GCCcore-10.2.0": ["accelgor", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jbigkit/2.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jbigkit/2.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jbigkit/2.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jbigkit/2.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jbigkit/2.1-GCCcore-9.3.0": ["donphan", "joltik", "skitty", "victini"]}}, "Jellyfish": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Jellyfish/2.3.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Jellyfish/2.3.0-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "jemalloc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"jemalloc/5.2.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "jemalloc/5.2.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jemalloc/5.2.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jemalloc/5.3.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "jemalloc/5.2.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "jemalloc/5.2.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "json-c": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"json-c/0.16-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "json-c/0.15-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "json-c/0.15-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "JsonCpp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"JsonCpp/1.9.4-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "JsonCpp/1.9.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "JsonCpp/1.9.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "JsonCpp/1.9.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "JsonCpp/1.9.3-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "JsonCpp/1.9.4-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Judy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Judy/1.0.5-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Judy/1.0.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Judy/1.0.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Judy/1.0.5-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Judy/1.0.5-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Julia": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Julia/1.7.2-linux-x86_64": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Julia/1.6.2-linux-x86_64": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "JupyterLab": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"JupyterLab/2.2.8-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "JupyterLab/3.0.16-GCCcore-10.3.0": ["accelgor", "donphan", "joltik"], "JupyterLab/3.1.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "JupyterLab/1.2.5-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "JupyterLab/3.5.0-GCCcore-11.3.0": ["donphan", "joltik"]}}, "jxrlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"jxrlib/1.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Kalign": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Kalign/3.3.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Kalign/3.3.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Kalign/3.3.2-GCCcore-11.2.0": ["accelgor", "donphan", "joltik"], "Kalign/3.3.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "kallisto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"kallisto/0.48.0-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "kallisto/0.46.1-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "kallisto/0.46.1-iimpi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "kallisto/0.46.1-iimpi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "kallisto/0.46.1-intel-2020a": ["doduo"]}}, "kb-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"kb-python/0.27.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Kent_tools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Kent_tools/422-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Kent_tools/401-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Kent_tools/411-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Kent_tools/20190326-linux.x86_64": ["donphan", "joltik"]}}, "Keras": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Keras/2.4.3-fosscuda-2020b-TensorFlow-2.5.0": ["accelgor", "joltik"], "Keras/2.4.3-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Keras/2.4.3-fosscuda-2020b": ["joltik"]}}, "KerasTuner": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"KerasTuner/1.3.5-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "kim-api": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"kim-api/2.3.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "kim-api/2.1.3-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "kim-api/2.1.3-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "kim-api/2.1.3-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "kim-api/2.2.1-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "kineto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"kineto/0.4.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "KMC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"KMC/3.2.1-GCC-11.2.0-Python-2.7.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "KMC/3.2.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "KMC/3.1.2rc1-GCC-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik"]}}, "KrakenUniq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"KrakenUniq/1.0.3-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "krbalancing": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"krbalancing/0.5.0b0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "KronaTools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"KronaTools/2.8.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "KronaTools/2.8-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "L_RNA_scaffolder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"L_RNA_scaffolder/20190530-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Lace": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Lace/1.14.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "LAME": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LAME/3.100-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LAME/3.100-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LAME/3.100-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LAME/3.100-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LAME/3.100-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LAME/3.100-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LAME/3.100-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "LAMMPS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"LAMMPS/23Jun2022-foss-2021b-kokkos-CUDA-11.4.1": ["accelgor", "joltik"], "LAMMPS/23Jun2022-foss-2021b-kokkos": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LAMMPS/patch_20Nov2019-intel-2019b": ["doduo"], "LAMMPS/3Mar2020-foss-2019b-Python-3.7.4-kokkos": ["doduo", "donphan", "joltik", "skitty", "victini"], "LAMMPS/3Mar2020-intel-2019b-Python-3.7.4-kokkos": ["doduo", "donphan", "joltik", "skitty", "victini"], "LAMMPS/3Mar2020-intel-2020a-Python-3.8.2-kokkos": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LAMMPS/7Aug2019-foss-2019b-Python-3.7.4-kokkos": ["doduo", "donphan", "joltik", "skitty", "victini"], "LAMMPS/7Aug2019-intel-2019b-Python-3.7.4-kokkos-OCTP": ["doduo", "donphan", "joltik", "skitty", "victini"], "LAMMPS/23Jun2022-foss-2021a-kokkos": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LAMMPS/7Aug2019-intel-2019b-Python-3.7.4-kokkos": ["donphan", "joltik", "skitty", "victini"]}}, "LDC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LDC/1.24.0-x86_64": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LDC/1.30.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LDC/0.17.6-x86_64": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LDC/1.25.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "leafcutter": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"leafcutter/0.2.9-foss-2022b-R-4.2.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "leidenalg": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"leidenalg/0.8.7-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "leidenalg/0.8.8-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "leidenalg/0.9.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "leidenalg/0.8.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "leidenalg/0.8.3-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "leidenalg/0.8.3-fosscuda-2020b": ["joltik"]}}, "LERC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LERC/4.0.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LERC/4.0.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "lftp": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"lftp/4.9.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libaec": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libaec/1.0.6-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libaio": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libaio/0.3.112-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libaio/0.3.112-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libaio/0.3.112-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libaio/0.3.113-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libaio/0.3.111-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libaio/0.3.112-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libarchive": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libarchive/3.4.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libarchive/3.5.1-GCCcore-8.3.0": ["accelgor", "joltik"], "libarchive/3.5.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libarchive/3.5.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libarchive/3.6.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libarchive/3.6.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libarchive/3.6.2-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libavif": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libavif/0.11.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libcerf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libcerf/1.13-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libcerf/1.14-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libcerf/1.17-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libcerf/1.17-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libcerf/2.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libcerf/1.13-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libcint": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libcint/4.4.0-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libcint/4.4.0-gomkl-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libcint/5.1.6-foss-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libde265": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libde265/1.0.8-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libde265/1.0.11-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libdeflate": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libdeflate/1.8-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libdeflate/1.10-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libdeflate/1.15-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libdeflate/1.7-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libdrm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libdrm/2.4.99-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libdrm/2.4.102-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libdrm/2.4.106-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libdrm/2.4.107-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libdrm/2.4.110-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libdrm/2.4.114-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libdrm/2.4.115-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libdrm/2.4.97-GCCcore-8.2.0": ["doduo", "swalot"], "libdrm/2.4.100-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libepoxy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libepoxy/1.5.8-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libepoxy/1.5.8-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libepoxy/1.5.10-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libepoxy/1.5.10-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libepoxy/1.5.4-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "libepoxy/1.5.4-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libev": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libev/4.33-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libevent": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libevent/2.1.11-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libevent/2.1.12-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libevent/2.1.12-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libevent/2.1.12-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libevent/2.1.12-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libevent/2.1.12-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libevent/2.1.12-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libevent/2.1.11-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libevent/2.1.12": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libfabric": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libfabric/1.11.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libfabric/1.12.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libfabric/1.13.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libfabric/1.15.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libfabric/1.16.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libfabric/1.18.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libfabric/1.11.0-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libffi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libffi/3.2.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libffi/3.3-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libffi/3.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libffi/3.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libffi/3.4.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libffi/3.4.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libffi/3.4.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libffi/3.4.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libffi/3.2.1-GCCcore-8.2.0": ["doduo", "swalot"]}}, "libgcrypt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libgcrypt/1.9.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libgcrypt/1.9.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libgd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libgd/2.2.5-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libgd/2.3.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgd/2.3.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgd/2.3.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgd/2.3.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgd/2.3.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgd/2.3.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libgeotiff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libgeotiff/1.7.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgeotiff/1.7.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgeotiff/1.7.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgeotiff/1.5.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "libgeotiff/1.5.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libgeotiff/1.6.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgeotiff/1.6.0-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libgit2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libgit2/1.1.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgit2/1.4.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgit2/1.5.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libgit2/1.1.0-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libGLU": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libGLU/9.0.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libGLU/9.0.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libGLU/9.0.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libGLU/9.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libGLU/9.0.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libGLU/9.0.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libGLU/9.0.0-GCCcore-8.2.0": ["doduo", "swalot"], "libGLU/9.0.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libglvnd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libglvnd/1.3.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libglvnd/1.3.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libglvnd/1.3.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libglvnd/1.4.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libglvnd/1.6.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libglvnd/1.6.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libglvnd/1.2.0-GCCcore-8.2.0": ["doduo", "swalot"], "libglvnd/1.2.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "libglvnd/1.2.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libgpg-error": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libgpg-error/1.42-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libgpg-error/1.42-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libgpuarray": {"clusters": ["accelgor", "joltik"], "versions": {"libgpuarray/0.7.6-fosscuda-2020b": ["accelgor", "joltik"]}}, "libharu": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libharu/2.3.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libharu/2.3.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "libharu/2.3.0-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libheif": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libheif/1.12.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libheif/1.16.2-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libiconv": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libiconv/1.16-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libiconv/1.16-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libiconv/1.16-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libiconv/1.16-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libiconv/1.17-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libiconv/1.17-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libiconv/1.17-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libiconv/1.16-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libidn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libidn/1.38-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libidn/1.35-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libidn/1.36-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libidn2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libidn2/2.3.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libidn2/2.3.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libidn2/2.3.0-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libidn2/2.3.0-GCCcore-9.3.0": ["donphan", "joltik", "skitty", "victini"]}}, "Libint": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Libint/2.7.2-GCC-11.3.0-lmax-6-cp2k": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Libint/2.7.2-GCC-12.2.0-lmax-6-cp2k": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Libint/1.1.6-foss-2020a": ["doduo"], "Libint/1.1.6-intel-2019b": ["doduo"], "Libint/1.1.6-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Libint/1.1.6-iomkl-2020a": ["doduo"], "Libint/2.6.0-GCC-10.2.0-lmax-6-cp2k": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Libint/2.6.0-GCC-10.3.0-lmax-6-cp2k": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Libint/2.6.0-gompi-2020a-lmax-6-cp2k": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Libint/2.6.0-gompi-2020b-lmax-6-cp2k": ["doduo"], "Libint/2.6.0-iccifort-2020.4.304-lmax-6-cp2k": ["doduo", "donphan", "joltik"], "Libint/2.6.0-iimpi-2020a-lmax-6-cp2k": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Libint/2.6.0-iimpi-2020b-lmax-6-cp2k": ["doduo"]}}, "libjpeg-turbo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libjpeg-turbo/2.0.3-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libjpeg-turbo/2.0.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libjpeg-turbo/2.0.6-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libjpeg-turbo/2.0.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libjpeg-turbo/2.1.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libjpeg-turbo/2.1.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libjpeg-turbo/2.0.2-GCCcore-8.2.0": ["doduo", "swalot"], "libjpeg-turbo/2.0.4-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libjxl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libjxl/0.8.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "LibLZF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LibLZF/3.6-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libmad": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"libmad/0.15.1b-GCCcore-11.3.0": ["accelgor", "donphan", "joltik"]}}, "libmaus2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libmaus2/2.0.499-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libobjcryst": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libobjcryst/2021.1.2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libobjcryst/2017.2.3-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libobjcryst/2021.1.2-intel-2020a": ["skitty", "victini"]}}, "libogg": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libogg/1.3.4-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libogg/1.3.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libogg/1.3.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libogg/1.3.5-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libogg/1.3.4-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libopus": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libopus/1.3.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libopus/1.3.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libpciaccess": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libpciaccess/0.14-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpciaccess/0.16-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpciaccess/0.16-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpciaccess/0.16-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpciaccess/0.16-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpciaccess/0.16-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpciaccess/0.17-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpciaccess/0.17-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libpng": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libpng/1.6.37-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libpng/1.6.37-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpng/1.6.37-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpng/1.6.37-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpng/1.6.37-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpng/1.6.37-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpng/1.6.38-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpng/1.6.39-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libpng/1.2.58": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libpng/1.6.36-GCCcore-8.2.0": ["doduo", "swalot"]}}, "libpsl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libpsl/0.21.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libpsl/0.21.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libreadline": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libreadline/8.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libreadline/8.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libreadline/8.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libreadline/8.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libreadline/8.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libreadline/8.1.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libreadline/8.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libreadline/8.2-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libreadline/8.0-GCCcore-8.2.0": ["doduo", "swalot"]}}, "librttopo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"librttopo/1.1.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libsndfile": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libsndfile/1.0.28-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libsndfile/1.0.31-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libsndfile/1.1.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libsndfile/1.2.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libsndfile/1.0.28-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libsndfile/1.0.28-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libsndfile/1.0.31-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libsodium": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libsodium/1.0.18-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libsodium/1.0.18-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libsodium/1.0.18-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libsodium/1.0.18-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libsodium/1.0.18-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libsodium/1.0.18-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "LibSoup": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LibSoup/2.74.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LibSoup/3.0.7-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libspatialindex": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libspatialindex/1.9.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libspatialite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libspatialite/5.0.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "LIBSVM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LIBSVM/3.25-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LIBSVM/3.30-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libtasn1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libtasn1/4.17.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libtasn1/4.18.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "LibTIFF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LibTIFF/4.1.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LibTIFF/4.2.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LibTIFF/4.3.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LibTIFF/4.3.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LibTIFF/4.4.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LibTIFF/4.0.10-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LibTIFF/4.1.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libtirpc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libtirpc/1.3.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtirpc/1.3.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtirpc/1.3.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtirpc/1.2.6-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libtirpc/1.3.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtirpc/1.3.2-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtirpc/1.2.6-GCCcore-9.3.0": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "libtool": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libtool/2.4.6-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtool/2.4.6-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtool/2.4.6-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtool/2.4.6-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtool/2.4.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtool/2.4.7-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtool/2.4.7-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtool/2.4.7-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtool/2.4.7": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libtool/2.4.6-GCCcore-8.2.0": ["doduo", "swalot"]}}, "libunistring": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libunistring/0.9.10-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libunistring/1.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libunistring/0.9.10-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "libunistring/0.9.10-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libunwind": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libunwind/1.3.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libunwind/1.4.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libunwind/1.4.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libunwind/1.5.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libunwind/1.6.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libunwind/1.6.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libunwind/1.6.2-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libunwind/1.3.1-GCCcore-8.2.0": ["doduo", "swalot"], "libunwind/1.3.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libvdwxc": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libvdwxc/0.4.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libvdwxc/0.4.0-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "libvorbis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libvorbis/1.3.7-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libvorbis/1.3.7-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libvorbis/1.3.7-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libvorbis/1.3.7-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libvorbis/1.3.7-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libvori": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libvori/220621-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libwebp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libwebp/1.2.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libwebp/1.2.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libwebp/1.2.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libwebp/1.1.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libwpe": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libwpe/1.13.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libxc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libxc/5.1.5-GCC-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxc/5.1.6-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libxc/5.1.6-intel-compilers-2021.4.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxc/5.2.3-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxc/5.2.3-intel-compilers-2022.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxc/6.1.0-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxc/3.0.1-foss-2020a": ["doduo"], "libxc/3.0.1-intel-2019b": ["doduo"], "libxc/3.0.1-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libxc/3.0.1-iomkl-2020a": ["doduo"], "libxc/4.3.4-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "libxc/4.3.4-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libxc/4.3.4-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxc/4.3.4-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"], "libxc/4.3.4-iccifort-2020.1.217": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libxc/4.3.4-iccifort-2020.4.304": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxc/5.1.2-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxc/5.1.5-intel-compilers-2021.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libxml2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libxml2/2.9.9-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxml2/2.9.10-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxml2/2.9.10-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxml2/2.9.10-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxml2/2.9.10-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxml2/2.9.13-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxml2/2.10.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxml2/2.11.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxml2/2.9.8-GCCcore-8.2.0": ["doduo", "swalot"]}}, "libxslt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libxslt/1.1.34-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxslt/1.1.34-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxslt/1.1.34-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxslt/1.1.34-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxslt/1.1.37-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxslt/1.1.34-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "libxslt/1.1.34-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libxsmm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libxsmm/1.17-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxsmm/1.17-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxsmm/1.16.1-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libxsmm/1.16.1-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libxsmm/1.16.1-iccifort-2019.5.281": ["doduo"], "libxsmm/1.16.1-iccifort-2020.1.217": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libxsmm/1.16.1-iccifort-2020.4.304": ["doduo", "donphan", "joltik"], "libxsmm/1.16.2-GCC-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "libyaml": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libyaml/0.2.2-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libyaml/0.2.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libyaml/0.2.5-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libyaml/0.2.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libyaml/0.2.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libyaml/0.2.5-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "libyaml/0.2.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libzip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"libzip/1.7.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "lifelines": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"lifelines/0.27.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Lighter": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Lighter/1.1.2-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "LittleCMS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LittleCMS/2.11-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LittleCMS/2.12-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LittleCMS/2.13.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LittleCMS/2.14-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LittleCMS/2.9-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LittleCMS/2.9-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LittleCMS/2.12-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "LLVM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LLVM/9.0.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LLVM/11.0.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LLVM/11.1.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LLVM/12.0.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LLVM/14.0.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LLVM/15.0.5-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LLVM/16.0.6-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LLVM/7.0.1-GCCcore-8.2.0": ["doduo", "swalot"], "LLVM/8.0.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "LLVM/9.0.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LLVM/10.0.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "LMDB": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LMDB/0.9.24-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LMDB/0.9.28-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LMDB/0.9.29-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LMDB/0.9.29-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LMDB/0.9.29-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LMDB/0.9.24-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LMDB/0.9.24-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "loompy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"loompy/3.0.7-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "loompy/3.0.7-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "loompy/3.0.7-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "loompy/3.0.7-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "loompy/3.0.6-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "loomR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"loomR/0.2.0-20180425-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "LoRDEC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LoRDEC/0.9-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "louvain": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"louvain/0.8.0-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "lpsolve": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"lpsolve/5.5.2.11-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lpsolve/5.5.2.11-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lpsolve/5.5.2.5-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "lpsolve/5.5.2.5-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "LSD2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LSD2/2.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LSD2/2.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LSD2/2.4.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Lua": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Lua/5.1.5-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Lua/5.3.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Lua/5.4.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Lua/5.4.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Lua/5.4.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Lua/5.4.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Lua/5.3.5-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "lxml": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"lxml/4.6.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lxml/4.6.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lxml/4.6.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lxml/4.9.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lxml/4.9.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lxml/4.4.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "lxml/4.5.2-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "lz4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"lz4/1.9.2-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "lz4/1.9.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lz4/1.9.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lz4/1.9.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lz4/1.9.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lz4/1.9.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lz4/1.9.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "lz4/1.9.2-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "LZO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LZO/2.10-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LZO/2.10-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LZO/2.10-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LZO/2.10-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "LZO/2.10-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "LZO/2.10-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "M4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"M4/1.4.18-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "M4/1.4.18-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "M4/1.4.18-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "M4/1.4.18-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "M4/1.4.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "M4/1.4.19-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "M4/1.4.19-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "M4/1.4.19-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "M4/1.4.19-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "M4/1.4.19": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "M4/1.4.18-GCCcore-8.2.0": ["doduo", "swalot"], "M4/1.4.17": ["skitty", "swalot", "victini"]}}, "MACS2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"MACS2/2.2.7.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "maeparser": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"maeparser/1.3.0-iimpi-2020a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MAFFT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MAFFT/7.490-gompi-2021b-with-extensions": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MAFFT/7.505-GCC-11.3.0-with-extensions": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MAFFT/7.505-GCC-12.2.0-with-extensions": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MAFFT/7.453-GCC-8.3.0-with-extensions": ["doduo", "donphan", "joltik", "skitty", "victini"], "MAFFT/7.453-GCC-9.3.0-with-extensions": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MAFFT/7.453-iccifort-2019.5.281-with-extensions": ["doduo", "donphan", "joltik", "skitty", "victini"], "MAFFT/7.453-iimpi-2020a-with-extensions": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MAFFT/7.475-GCC-10.2.0-with-extensions": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MAFFT/7.475-gompi-2020b-with-extensions": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MAGeCK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MAGeCK/0.5.9.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MAGeCK/0.5.9.5-gfbf-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "magma": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"magma/2.5.4-fosscuda-2020b": ["accelgor", "joltik"], "magma/2.6.1-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "magma/2.6.2-foss-2022a-CUDA-11.7.0": ["accelgor", "donphan", "joltik"]}}, "mahotas": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"mahotas/1.4.13-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "make": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"make/4.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik"], "make/4.4.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "make/4.2.1-GCCcore-8.3.0": ["doduo", "skitty", "victini"], "make/4.3-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "make/4.3-GCCcore-10.2.0": ["doduo"], "make/4.3-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "make/4.3-GCCcore-11.2.0": ["doduo", "gallade"], "make/4.3-GCCcore-12.2.0": ["doduo", "donphan", "joltik"]}}, "makeinfo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"makeinfo/6.7-GCCcore-8.3.0-minimal": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "makeinfo/6.7-GCCcore-9.3.0-minimal": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "makeinfo/6.7-GCCcore-10.2.0-minimal": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "makeinfo/6.7-GCCcore-10.3.0-minimal": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "makeinfo/6.7-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "makeinfo/6.7-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "makeinfo/6.7-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "makeinfo/6.7-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Mako": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Mako/1.1.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Mako/1.1.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mako/1.1.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mako/1.1.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mako/1.2.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mako/1.2.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mako/1.2.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mako/1.0.8-GCCcore-8.2.0": ["doduo", "swalot"], "Mako/1.1.2-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "mapDamage": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"mapDamage/2.2.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MariaDB": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MariaDB/10.6.4-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MariaDB/10.6.4-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MariaDB/10.9.3-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MariaDB/10.4.13-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MariaDB/10.5.8-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Mash": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Mash/2.3-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Mash/2.3-intel-compilers-2021.4.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Mash/2.2-GCC-9.3.0": ["doduo", "donphan", "gallade", "skitty", "swalot", "victini"]}}, "MaSuRCA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MaSuRCA/4.1.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MATLAB": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MATLAB/2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MATLAB/2022b-r5": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MATLAB/2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "matplotlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"matplotlib/3.2.1-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.3.3-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.3.3-fosscuda-2020b": ["accelgor", "joltik"], "matplotlib/3.4.2-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.4.2-gomkl-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.4.3-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.4.3-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.5.2-foss-2021b": ["accelgor", "donphan", "joltik"], "matplotlib/3.5.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.5.2-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.7.0-gfbf-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "matplotlib/2.2.4-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "matplotlib/2.2.4-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "matplotlib/2.2.5-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "matplotlib/2.2.5-intel-2020a-Python-2.7.18": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.1.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.1.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.2.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "matplotlib/3.3.3-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Maven": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Maven/3.6.3": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Maven/3.6.0": ["donphan", "joltik", "swalot"]}}, "MaxBin": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MaxBin/2.2.7-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MaxBin/2.2.7-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "mcu": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"mcu/2021-04-06-gomkl-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MDAnalysis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MDAnalysis/2.4.2-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MDAnalysis/2.4.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MDTraj": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MDTraj/1.9.5-fosscuda-2020b": ["accelgor", "joltik"], "MDTraj/1.9.7-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MDTraj/1.9.7-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MDTraj/1.9.7-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MDTraj/1.9.7-intel-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MDTraj/1.9.3-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MDTraj/1.9.3-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MDTraj/1.9.4-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MDTraj/1.9.5-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MDTraj/1.9.5-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "medaka": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"medaka/1.6.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "medaka/1.8.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "medaka/1.9.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "medaka/1.1.3-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "medaka/1.2.6-foss-2019b-Python-3.7.4": ["doduo", "swalot"], "medaka/1.4.3-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "medaka/1.4.3-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "medaka/1.1.1-foss-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"]}}, "MedPy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MedPy/0.4.0-fosscuda-2020b": ["accelgor", "joltik"], "MedPy/0.4.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "MedPy/0.4.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MEGAHIT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MEGAHIT/1.2.9-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MEGAHIT/1.2.9-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MEGAHIT/1.2.9-GCCcore-10.2.0-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Megalodon": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Megalodon/2.3.5-fosscuda-2020b": ["accelgor", "joltik"], "Megalodon/2.3.5-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MEME": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"MEME/5.4.1-gompi-2021b-Python-2.7.18": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Mercurial": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Mercurial/6.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Mesa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Mesa/19.1.7-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Mesa/20.2.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mesa/21.1.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mesa/21.1.7-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mesa/22.0.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mesa/22.2.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mesa/23.1.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Mesa/19.0.1-GCCcore-8.2.0": ["doduo", "swalot"], "Mesa/19.2.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Mesa/20.0.2-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Meson": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Meson/0.55.1-GCCcore-9.3.0-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Meson/0.55.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Meson/0.58.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Meson/0.58.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Meson/0.59.1-GCCcore-8.3.0-Python-3.7.4": ["accelgor", "donphan", "joltik", "skitty", "swalot", "victini"], "Meson/0.62.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Meson/0.64.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Meson/1.1.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Meson/0.50.0-GCCcore-8.2.0-Python-3.7.2": ["doduo", "swalot"], "Meson/0.51.2-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Meson/0.53.2-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MetaBAT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MetaBAT/2.15-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MetaBAT/2.15-gompi-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MetaEuk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MetaEuk/6-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MetaEuk/4-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MetaPhlAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MetaPhlAn/4.0.6-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "methylpy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"methylpy/1.2.9-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "METIS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"METIS/5.1.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "METIS/5.1.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "METIS/5.1.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "METIS/5.1.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "METIS/5.1.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "METIS/5.1.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "mgen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"mgen/1.2.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "mgltools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"mgltools/1.5.7": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MIGRATE-N": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"MIGRATE-N/5.0.4-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Miniconda3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Miniconda3/22.11.1-1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Miniconda3/23.5.2-0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Miniconda3/4.8.3": ["doduo", "donphan", "joltik", "skitty", "victini"], "Miniconda3/4.9.2": ["doduo", "donphan", "joltik", "skitty", "victini"], "Miniconda3/4.7.10": ["skitty", "victini"]}}, "minimap2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"minimap2/2.20-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "minimap2/2.22-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "minimap2/2.24-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "minimap2/2.24-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "minimap2/2.26-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "minimap2/2.17-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "minimap2/2.17-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "minimap2/2.18-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "minimap2/2.20-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Minipolish": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Minipolish/0.1.3-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "minizip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"minizip/1.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MinPath": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"MinPath/1.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MinPath/1.4-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "mkl-service": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"mkl-service/2.3.0-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "mkl-service/2.3.0-intel-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"], "mkl-service/2.3.0-intel-2020b": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "MMseqs2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MMseqs2/13-45111-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MMseqs2/13-45111-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MMseqs2/13-45111-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MMseqs2/10-6d92c-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "MMseqs2/10-6d92c-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "MMseqs2/11-e1a1c-iimpi-2019b": ["doduo", "skitty", "victini"], "MMseqs2/12-113e3-gompi-2020b": ["doduo"], "MMseqs2/13-45111-20211006-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "swalot"], "MMseqs2/13-45111-20211019-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ModelTest-NG": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ModelTest-NG/0.1.7-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Molekel": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Molekel/5.4.0-Linux_x86_64": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "molmod": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"molmod/1.4.5-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "molmod/1.4.5-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "molmod/1.4.5-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "MONAI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MONAI/1.0.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Monocle3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Monocle3/1.3.1-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Monocle3/0.2.3-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MOOSE": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"MOOSE/2022-06-10-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MOOSE/2021-05-18-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "mosdepth": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"mosdepth/0.3.3-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MPC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MPC/1.2.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MPC/1.2.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MPC/1.1.0-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MPC/1.1.0-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MPC/1.2.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MPFR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MPFR/4.0.2-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MPFR/4.1.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MPFR/4.1.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MPFR/4.1.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MPFR/4.1.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MPFR/4.2.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MPFR/4.0.2-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "mpi4py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"mpi4py/3.1.4-gompi-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "mrcfile": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"mrcfile/1.3.0-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "mrcfile/1.3.0-fosscuda-2020b": ["accelgor", "joltik"]}}, "MRtrix": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MRtrix/3.0.4-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MRtrix/3.0-rc-20191217-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "MRtrix/3.0-rc-20191217-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "MRtrix/3.0.3-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "mujoco-py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"mujoco-py/2.1.2.14-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "mujoco-py/2.3.7-foss-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MuJoCo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MuJoCo/2.1.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MuJoCo/2.3.7-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MultilevelEstimators": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"MultilevelEstimators/0.1.0-GCC-11.2.0-Julia-1.7.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MultiQC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MultiQC/1.14-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MultiQC/1.8-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "MultiQC/1.8-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "MultiQC/1.9-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MUMmer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MUMmer/4.0.0beta2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MUMmer/4.0.0beta2-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MUMPS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MUMPS/5.2.1-foss-2019b-metis": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MUMPS/5.4.1-foss-2021b-metis": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MUMPS/5.4.1-intel-2021b-metis": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MUMPS/5.5.1-foss-2022a-metis": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MUMPS/5.2.1-foss-2020a-metis": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MUMPS/5.2.1-intel-2019b-metis": ["doduo", "donphan", "joltik", "skitty", "victini"], "MUMPS/5.2.1-intel-2020a-metis": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MUMPS/5.3.5-foss-2020b-metis": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MUMPS/5.4.0-foss-2021a-metis": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MUSCLE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MUSCLE/3.8.31-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MUSCLE/5.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MUSCLE/5.1.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MUSCLE/3.8.31-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MUSCLE/3.8.1551-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "MUSCLE/3.8.1551-GCC-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MXNet": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MXNet/1.9.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "mygene": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"mygene/3.2.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "mysqlclient": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"mysqlclient/2.1.1-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "NAMD": {"clusters": ["accelgor", "joltik"], "versions": {"NAMD/2.14-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"]}}, "nanoget": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nanoget/1.18.1-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nanoget/1.18.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nanoget/1.12.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "nanoget/1.15.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "nanomath": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nanomath/1.2.1-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nanomath/1.3.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nanomath/0.23.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "nanomath/1.2.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "NanoStat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"NanoStat/1.6.0-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NanoStat/1.6.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "napari": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"napari/0.4.15-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "NASM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"NASM/2.14.02-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "NASM/2.15.05-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NASM/2.15.05-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NASM/2.15.05-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NASM/2.15.05-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NASM/2.15.05-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NASM/2.14.02-GCCcore-8.2.0": ["doduo", "swalot"], "NASM/2.14.02-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ncbi-vdb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ncbi-vdb/2.11.2-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ncbi-vdb/3.0.0-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncbi-vdb/3.0.2-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncbi-vdb/2.10.7-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ncbi-vdb/2.10.9-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "NCCL": {"clusters": ["accelgor", "donphan", "joltik", "skitty", "victini"], "versions": {"NCCL/2.8.3-GCCcore-10.2.0-CUDA-11.1.1": ["accelgor", "joltik", "skitty", "victini"], "NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1": ["accelgor", "joltik"], "NCCL/2.10.3-GCCcore-11.2.0-CUDA-11.4.1": ["accelgor", "joltik"], "NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0": ["accelgor", "donphan", "joltik"], "NCCL/2.8.3-CUDA-11.1.1": ["joltik"]}}, "ncdf4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ncdf4/1.17-foss-2020b-R-4.0.3": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncdf4/1.17-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ncdf4/1.17-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ncdf4/1.17-foss-2021a-R-4.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ncolor": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ncolor/1.2.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ncurses": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ncurses/6.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.2-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.3": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ncurses/6.1-GCCcore-8.2.0": ["doduo", "swalot"]}}, "netCDF-C++4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"netCDF-C++4/4.3.1-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF-C++4/4.3.1-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF-C++4/4.3.1-gompi-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF-C++4/4.3.1-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF-C++4/4.3.1-iimpi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "netCDF-Fortran": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"netCDF-Fortran/4.5.3-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF-Fortran/4.5.3-iimpi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "netCDF-Fortran/4.5.2-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "netCDF-Fortran/4.5.2-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF-Fortran/4.5.2-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF-Fortran/4.5.2-iimpi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF-Fortran/4.5.3-gompi-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF-Fortran/4.5.3-iimpi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "netCDF-Fortran/4.6.0-iimpi-2022a": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "netCDF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"netCDF/4.7.1-gompi-2019b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF/4.7.4-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "netCDF/4.8.0-gompi-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "netCDF/4.8.1-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "netCDF/4.8.1-iimpi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "netCDF/4.9.0-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "netCDF/4.9.0-gompi-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "netCDF/4.7.1-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF/4.7.4-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF/4.7.4-iimpi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF/4.7.4-iimpi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "netCDF/4.8.0-iimpi-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netCDF/4.9.0-iimpi-2022a": ["donphan", "joltik", "skitty", "swalot", "victini"], "netCDF/4.7.4-gompic-2020b": ["joltik"]}}, "netcdf4-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"netcdf4-python/1.5.7-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "netcdf4-python/1.5.7-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netcdf4-python/1.5.3-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "netcdf4-python/1.5.3-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netcdf4-python/1.5.3-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "netcdf4-python/1.5.3-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netcdf4-python/1.5.5.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "netcdf4-python/1.5.5.1-fosscuda-2020b": ["joltik"]}}, "NetPyNE": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"NetPyNE/1.0.2.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "nettle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nettle/3.5.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "nettle/3.6-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nettle/3.7.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nettle/3.8-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nettle/3.8.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nettle/3.4.1-GCCcore-8.2.0": ["doduo", "swalot"], "nettle/3.6-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "nettle/3.7.2-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "networkx": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"networkx/2.5-fosscuda-2020b": ["accelgor", "joltik"], "networkx/2.5.1-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "networkx/2.6.3-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "networkx/2.8.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "networkx/2.8.4-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "networkx/3.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "networkx/3.0-gfbf-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "networkx/2.4-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "networkx/2.4-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "networkx/2.4-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "networkx/2.4-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "networkx/2.5-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "NEURON": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"NEURON/7.8.2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Nextflow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Nextflow/22.10.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Nextflow/22.10.5": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Nextflow/23.04.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Nextflow/20.10.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Nextflow/21.03.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Nextflow/21.10.6": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Nextflow/19.12.0": ["donphan", "joltik", "skitty", "victini"], "Nextflow/20.01.0": ["donphan", "joltik", "skitty", "victini"], "Nextflow/20.04.1": ["donphan", "joltik", "skitty", "victini"], "Nextflow/21.08.0": ["skitty", "victini"]}}, "NextGenMap": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"NextGenMap/0.5.5-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "nghttp2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nghttp2/1.48.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "nghttp3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nghttp3/0.6.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "nglview": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nglview/2.7.7-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "NGS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"NGS/2.11.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "NGS/2.10.4-GCCcore-8.3.0-Java-11": ["doduo", "donphan", "joltik", "skitty", "victini"], "NGS/2.10.5-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "NGS/2.10.9-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "NGSpeciesID": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"NGSpeciesID/0.1.2.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "NGSpeciesID/0.1.1.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "ngtcp2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ngtcp2/0.7.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "NiBabel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"NiBabel/3.2.1-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "NiBabel/3.2.1-fosscuda-2020b": ["accelgor", "joltik"], "NiBabel/4.0.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NiBabel/3.1.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "NiBabel/3.2.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "nichenetr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nichenetr/1.1.1-20230223-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Nim": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Nim/1.6.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Nim/1.4.6-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Ninja": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Ninja/1.9.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Ninja/1.10.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ninja/1.10.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ninja/1.10.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ninja/1.10.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ninja/1.10.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ninja/1.11.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ninja/1.11.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Ninja/1.9.0-GCCcore-8.2.0": ["doduo", "swalot"]}}, "Nipype": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Nipype/1.8.5-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Nipype/1.4.2-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "nlohmann_json": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nlohmann_json/3.10.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nlohmann_json/3.11.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "NLopt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"NLopt/2.6.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NLopt/2.7.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NLopt/2.7.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NLopt/2.7.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NLopt/2.6.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "NLopt/2.6.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "NLopt/2.7.0-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "nnU-Net": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nnU-Net/1.7.0-fosscuda-2020b": ["accelgor", "joltik"], "nnU-Net/1.7.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "nodejs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nodejs/12.19.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nodejs/14.17.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nodejs/16.15.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nodejs/18.12.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nodejs/12.16.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "nodejs/14.17.0-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "NSPR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"NSPR/4.21-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "NSPR/4.29-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NSPR/4.30-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NSPR/4.32-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NSPR/4.34-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NSPR/4.35-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NSPR/4.25-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "NSS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"NSS/3.45-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "NSS/3.57-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NSS/3.65-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NSS/3.69-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NSS/3.79-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NSS/3.85-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "NSS/3.51-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "nsync": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nsync/1.24.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nsync/1.24.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "nsync/1.24.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nsync/1.25.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "nsync/1.24.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "nsync/1.24.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "num2words": {"clusters": ["accelgor", "joltik"], "versions": {"num2words/0.5.10-GCCcore-10.3.0": ["accelgor", "joltik"]}}, "numactl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"numactl/2.0.12-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numactl/2.0.13-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numactl/2.0.13-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numactl/2.0.14-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numactl/2.0.14-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numactl/2.0.14-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numactl/2.0.16-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numactl/2.0.16-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "numba": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"numba/0.53.1-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numba/0.54.1-foss-2021b-CUDA-11.4.1": ["accelgor", "joltik"], "numba/0.54.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numba/0.54.1-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "numba/0.56.4-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "numba/0.56.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numba/0.47.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "numba/0.50.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "numba/0.50.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "numba/0.52.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numba/0.52.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "numba/0.53.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numba/0.52.0-fosscuda-2020b": ["joltik"], "numba/0.53.1-fosscuda-2020b": ["joltik"]}}, "numexpr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"numexpr/2.7.1-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "numexpr/2.7.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "numexpr/2.7.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "numexpr/2.7.1-intel-2019b-Python-2.7.16": ["doduo", "skitty", "victini"]}}, "NVHPC": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"NVHPC/21.2": ["accelgor", "donphan", "joltik"], "NVHPC/20.9": ["joltik"]}}, "nvtop": {"clusters": ["accelgor"], "versions": {"nvtop/1.2.1-GCCcore-10.3.0": ["accelgor"]}}, "olaFlow": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"olaFlow/20210820-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "olego": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"olego/1.1.9-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Omnipose": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Omnipose/0.4.4-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "Omnipose/0.4.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "onedrive": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"onedrive/2.4.21-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ont-fast5-api": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ont-fast5-api/4.0.0-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ont-fast5-api/4.0.2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ont-fast5-api/4.1.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ont-fast5-api/4.1.1-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ont-fast5-api/3.3.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ont-fast5-api/3.3.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ont-fast5-api/3.3.0-fosscuda-2020b": ["joltik"]}}, "OpenBabel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenBabel/3.1.1-iimpi-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "OpenBLAS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenBLAS/0.3.7-GCC-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenBLAS/0.3.12-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenBLAS/0.3.15-GCC-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenBLAS/0.3.18-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenBLAS/0.3.20-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenBLAS/0.3.21-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenBLAS/0.3.23-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenBLAS/0.3.9-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OpenCV": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib": ["accelgor", "joltik"], "OpenCV/4.5.5-foss-2021b-contrib": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenCV/4.6.0-foss-2022a-contrib": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenCV/4.6.0-foss-2022a-CUDA-11.7.0-contrib": ["accelgor", "joltik"], "OpenCV/4.2.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "OpenCV/4.5.1-foss-2020b-contrib": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenCV/4.5.3-foss-2021a-contrib": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenCV/4.5.1-fosscuda-2020b-contrib": ["joltik"]}}, "OpenEXR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenEXR/3.0.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenEXR/3.1.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenEXR/3.1.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenEXR/3.1.5-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenEXR/2.4.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "OpenEXR/2.5.5-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "OpenFOAM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenFOAM/v2112-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/v2206-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/7-foss-2019b-20200508": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/8-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/9-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/10-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/v1906-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "OpenFOAM/v1912-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "OpenFOAM/v2006-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/v2012-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/v2106-foss-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/2.3.1-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "OpenFOAM/5.0-20180606-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/6-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "OpenFOAM/7-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/8-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenFOAM/8-intel-2020b": ["doduo"], "OpenFOAM/9-intel-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OpenFold": {"clusters": ["accelgor", "joltik"], "versions": {"OpenFold/1.0.0-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "OpenFold/1.0.1-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"]}}, "OpenJPEG": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenJPEG/2.4.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenJPEG/2.4.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenJPEG/2.5.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenJPEG/2.5.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "OpenMM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenMM/7.5.0-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMM/7.5.0-fosscuda-2020b": ["accelgor", "joltik"], "OpenMM/7.5.1-foss-2021a-CUDA-11.3.1-DeepMind-patch": ["accelgor", "joltik"], "OpenMM/7.5.1-foss-2021a-DeepMind-patch": ["accelgor", "donphan", "joltik"], "OpenMM/7.5.1-foss-2021b-CUDA-11.4.1-DeepMind-patch": ["accelgor", "joltik"], "OpenMM/7.5.1-foss-2021b-DeepMind-patch": ["accelgor", "donphan", "joltik"], "OpenMM/7.5.1-fosscuda-2020b": ["accelgor", "joltik"], "OpenMM/7.7.0-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "OpenMM/7.7.0-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenMM/7.7.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMM/8.0.0-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "OpenMM/8.0.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMM/7.4.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "OpenMM/7.4.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "OpenMM/7.4.2-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenMM/7.5.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenMM/7.5.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OpenMPI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenMPI/3.1.4-GCC-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMPI/4.0.5-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMPI/4.0.5-gcccuda-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMPI/4.0.5-iccifort-2020.4.304": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMPI/4.0.5-NVHPC-21.2-CUDA-11.2.1": ["accelgor", "donphan", "joltik"], "OpenMPI/4.1.1-GCC-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMPI/4.1.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMPI/4.1.4-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMPI/4.1.4-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMPI/4.1.5-GCC-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMPI/3.1.4-GCC-8.3.0-ucx": ["doduo", "swalot"], "OpenMPI/4.0.3-GCC-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenMPI/4.0.3-iccifort-2020.1.217": ["doduo"], "OpenMPI/4.1.1-intel-compilers-2021.2.0": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "OpenPGM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenPGM/5.2.122-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenPGM/5.2.122-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenPGM/5.2.122-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenPGM/5.2.122-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenPGM/5.2.122-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OpenPGM/5.2.122-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "openpyxl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"openpyxl/3.0.7-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "openpyxl/3.0.9-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "openpyxl/3.0.10-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "openpyxl/3.1.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "openpyxl/2.6.4-GCCcore-8.3.0-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "openslide-python": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"openslide-python/1.1.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "openslide-python/1.1.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OpenSlide": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenSlide/3.4.1-GCCcore-10.3.0-largefiles": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenSlide/3.4.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OpenSSL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenSSL/1.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Optuna": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Optuna/3.1.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ORCA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ORCA/5.0.2-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ORCA/5.0.3-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ORCA/5.0.4-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ORCA/4.2.0-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "ORCA/4.2.1-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Osi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Osi/0.108.7-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OSU-Micro-Benchmarks": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OSU-Micro-Benchmarks/5.7.1-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.8-iimpi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.6.3-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.6.3-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.6.3-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.6.3-iimpi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.6.3-iimpi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.6.3-gompi-2020b": ["donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.7-gompi-2020b": ["donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.7-iimpi-2020b": ["donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.7.1-iimpi-2021a": ["donphan", "joltik", "skitty", "swalot", "victini"], "OSU-Micro-Benchmarks/5.7.1-iompi-2021a": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "p11-kit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"p11-kit/0.24.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "p11-kit/0.24.0-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pairtools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pairtools/0.3.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Pango": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Pango/1.44.7-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pango/1.47.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pango/1.48.5-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pango/1.48.8-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pango/1.50.7-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pango/1.50.12-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pango/1.44.7-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "parallel-fastq-dump": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"parallel-fastq-dump/0.6.6-GCCcore-9.3.0-SRA-Toolkit-3.0.0-Python-3.8.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "parallel-fastq-dump/0.6.7-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "parallel-fastq-dump/0.6.6-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "parallel-fastq-dump/0.6.7-gompi-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "parallel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"parallel/20220722-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "parallel/20230722-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "parallel/20190922-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "parallel/20200522-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "parallel/20210322-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "parallel/20210622-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "parallel/20210722-GCCcore-11.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "parasail": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"parasail/2.4.3-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "parasail/2.5-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "parasail/2.6-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "parasail/2.4.1-foss-2019b": ["doduo"], "parasail/2.4.1-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "parasail/2.4.2-iccifort-2020.1.217": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "parasail/2.4.1-GCC-8.3.0": ["donphan", "joltik", "skitty", "swalot", "victini"], "parasail/2.4.3-GCC-10.2.0": ["donphan", "joltik"]}}, "ParaView": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ParaView/5.6.2-foss-2019b-Python-3.7.4-mpi": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ParaView/5.8.1-foss-2020b-mpi": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ParaView/5.9.1-foss-2021a-mpi": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ParaView/5.9.1-foss-2021b-mpi": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ParaView/5.10.1-foss-2022a-mpi": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ParaView/5.4.1-foss-2019b-Python-2.7.16-mpi": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ParaView/5.8.0-foss-2020a-Python-3.8.2-mpi": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ParaView/5.8.1-intel-2020b-mpi": ["doduo"], "ParaView/5.9.1-intel-2021a-mpi": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ParMETIS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ParMETIS/4.0.3-gompi-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ParMETIS/4.0.3-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ParMETIS/4.0.3-gompi-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ParMETIS/4.0.3-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "ParMETIS/4.0.3-iimpi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "patchelf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"patchelf/0.13-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "patchelf/0.15.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "patchelf/0.18.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "patchelf/0.10-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "patchelf/0.12-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "patchelf/0.12-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "PBGZIP": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"PBGZIP/20160804-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "PCRE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PCRE/8.43-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PCRE/8.44-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PCRE/8.44-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PCRE/8.44-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PCRE/8.45-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PCRE/8.45-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PCRE/8.45-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PCRE2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PCRE2/10.33-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PCRE2/10.35-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PCRE2/10.36-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PCRE2/10.37-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PCRE2/10.40-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PCRE2/10.40-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PCRE2/10.34-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PCRE2/10.36": ["doduo", "donphan", "joltik", "swalot"], "PCRE2/10.32": ["donphan", "joltik"]}}, "pdsh": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pdsh/2.34-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pdsh/2.34-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pdsh/2.34-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "peakdetect": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"peakdetect/1.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PEAR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PEAR/0.9.11-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PEAR/0.9.11-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Perl-bundle-CPAN": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Perl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Perl/5.30.0-GCCcore-8.3.0-minimal": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.30.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.30.2-GCCcore-9.3.0-minimal": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.30.2-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.32.0-GCCcore-10.2.0-minimal": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.32.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.32.1-GCCcore-10.3.0-minimal": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.32.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.34.0-GCCcore-11.2.0-minimal": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.34.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.34.1-GCCcore-11.3.0-minimal": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.34.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.36.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.36.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Perl/5.28.1-GCCcore-8.2.0": ["doduo", "swalot"]}}, "PETSc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PETSc/3.12.4-foss-2019b-Python-3.7.4": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PETSc/3.17.4-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PETSc/3.18.4-intel-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PETSc/3.12.4-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PETSc/3.12.4-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "PETSc/3.14.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PETSc/3.15.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PETSc/3.12.4-intel-2019b-Python-3.7.4": ["donphan", "joltik"]}}, "Phenoflow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Phenoflow/1.1.2-20200917-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "phonopy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"phonopy/2.7.1-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PhyloPhlAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PhyloPhlAn/3.0.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "picard": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"picard/2.25.1-Java-11": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "picard/2.21.6-Java-11": ["doduo", "donphan", "joltik", "skitty", "victini"], "picard/2.25.0-Java-11": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "picard/2.21.1-Java-11": ["donphan", "joltik", "skitty", "victini"], "picard/2.18.27-Java-1.8": ["skitty", "victini"]}}, "PICRUSt2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PICRUSt2/2.5.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pigz": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pigz/2.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pigz/2.7-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pigz/2.4-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "pigz/2.6-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Pillow-SIMD": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Pillow-SIMD/7.1.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pillow-SIMD/8.2.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pillow-SIMD/9.2.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pillow-SIMD/6.0.x.post0-GCCcore-8.3.0": ["donphan", "joltik", "skitty", "victini"]}}, "Pillow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Pillow/8.0.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pillow/8.2.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pillow/8.3.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pillow/8.3.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pillow/9.1.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pillow/9.4.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pillow/6.2.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Pillow/7.0.0-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Pilon": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Pilon/1.23-Java-11": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pilon/1.23-Java-1.8": ["skitty", "victini"]}}, "pixman": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pixman/0.38.4-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pixman/0.38.4-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pixman/0.40.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pixman/0.40.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pixman/0.40.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pixman/0.40.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pixman/0.42.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pixman/0.38.0-GCCcore-8.2.0": ["doduo", "swalot"]}}, "pkg-config": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pkg-config/0.29.2-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pkg-config/0.29.2-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkg-config/0.29.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkg-config/0.29.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkg-config/0.29.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkg-config/0.29.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkg-config/0.29.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkg-config/0.29.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pkg-config/0.29.2-GCCcore-8.2.0": ["doduo", "swalot"]}}, "pkgconf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pkgconf/1.8.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkgconf/1.8.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkgconf/1.8.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkgconf/1.9.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkgconf/1.9.5-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pkgconfig": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pkgconfig/1.5.1-GCCcore-9.3.0-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkgconfig/1.5.1-GCCcore-10.2.0-python": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkgconfig/1.5.4-GCCcore-10.3.0-python": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkgconfig/1.5.5-GCCcore-11.2.0-python": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkgconfig/1.5.5-GCCcore-11.3.0-python": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkgconfig/1.5.5-GCCcore-12.2.0-python": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pkgconfig/1.5.1-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "PLAMS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PLAMS/1.5.1-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PLINK": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"PLINK/2.00a3.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "plot1cell": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"plot1cell/0.0.1-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "plotly.py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"plotly.py/5.1.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "plotly.py/5.4.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "plotly.py/5.10.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "plotly.py/5.12.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "plotly.py/5.13.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "plotly.py/4.4.1-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "plotly.py/4.8.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "plotly.py/4.14.3-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PLUMED": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PLUMED/2.7.2-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PLUMED/2.7.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PLUMED/2.8.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PLUMED/2.9.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PLUMED/2.5.3-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "PLUMED/2.5.3-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "PLUMED/2.6.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PLUMED/2.6.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PLUMED/2.6.0-iomkl-2020a-Python-3.8.2": ["doduo"], "PLUMED/2.6.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PLUMED/2.6.2-intel-2020b": ["doduo", "donphan", "joltik"], "PLUMED/2.6.2-intelcuda-2020b": ["joltik"]}}, "PMIx": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PMIx/3.1.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PMIx/3.2.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PMIx/4.1.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PMIx/4.1.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PMIx/4.2.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PMIx/4.2.4-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PMIx/3.1.5-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PMIx/3.1.4-GCCcore-8.3.0": ["skitty", "victini"]}}, "PnetCDF": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"PnetCDF/1.12.3-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pocl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pocl/1.4-gcccuda-2019b": ["accelgor", "joltik"], "pocl/1.8-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pocl/1.8-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pocl/3.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pocl/1.6-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pocl/1.6-gcccuda-2020b": ["joltik"]}}, "pod5-file-format": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pod5-file-format/0.1.8-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "poetry": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"poetry/1.0.9-GCCcore-9.3.0-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "poetry/1.5.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "polars": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"polars/0.15.6-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "poppler": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"poppler/22.01.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "poppler/21.06.1-GCC-10.3.0": ["doduo", "donphan", "joltik", "swalot"]}}, "popscle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"popscle/0.1-beta-20210505-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "popscle/0.1-beta-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "PostgreSQL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PostgreSQL/13.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PostgreSQL/14.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "POT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"POT/0.9.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "powerlaw": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"powerlaw/1.5-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PPanGGOLiN": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"PPanGGOLiN/1.1.136-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pplacer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pplacer/1.1.alpha19": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "preseq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"preseq/3.2.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "presto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"presto/1.0.0-20200718-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "presto/1.0.0-20230113-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pretty-yaml": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pretty-yaml/21.10.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "PRINSEQ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PRINSEQ/0.20.4-foss-2021b-Perl-5.34.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PRINSEQ/0.20.4-foss-2020b-Perl-5.32.0": ["doduo", "donphan", "gallade", "joltik", "swalot"]}}, "prodigal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"prodigal/2.6.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "prodigal/2.6.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "prodigal/2.6.3-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "prodigal/2.6.3-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "PROJ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PROJ/8.1.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PROJ/9.0.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PROJ/9.1.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PROJ/6.2.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "PROJ/7.0.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PROJ/7.2.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PROJ/8.0.1-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ProtHint": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ProtHint/2.6.0-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ProtHint/2.6.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ProtHint/2.6.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ProtHint/2.4.0-iccifort-2019.5.281-Python-3.7.4": ["doduo", "donphan", "joltik"]}}, "protobuf-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"protobuf-python/3.14.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "protobuf-python/3.17.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "protobuf-python/3.17.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "protobuf-python/3.19.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "protobuf-python/3.10.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "protobuf-python/3.13.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "protobuf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"protobuf/3.14.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "protobuf/3.17.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "protobuf/3.17.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "protobuf/3.19.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "protobuf/2.5.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "protobuf/2.5.0-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "protobuf/3.10.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "protobuf/3.13.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "PsiCLASS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PsiCLASS/1.0.3-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "psutil": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"psutil/5.9.5-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "psycopg2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"psycopg2/2.9.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "psycopg2/2.9.6-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pugixml": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pugixml/1.12.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pullseq": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pullseq/1.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "purge_dups": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"purge_dups/1.2.5-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pv": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pv/1.7.24-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "py-cpuinfo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"py-cpuinfo/9.0.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "py-cpuinfo/9.0.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "py3Dmol": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"py3Dmol/2.0.1.post1-GCCcore-11.3.0": ["accelgor", "donphan", "joltik"]}}, "pybedtools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pybedtools/0.8.2-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pybedtools/0.9.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybedtools/0.9.0-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybedtools/0.8.1-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pybedtools/0.8.2-GCC-10.2.0-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybedtools/0.8.2-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pyBigWig": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pyBigWig/0.3.18-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyBigWig/0.3.18-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pyBigWig/0.3.18-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pyBigWig/0.3.17-GCCcore-9.3.0": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "pybind11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pybind11/2.4.3-GCCcore-9.3.0-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybind11/2.6.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybind11/2.6.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybind11/2.7.1-GCCcore-11.2.0-Python-2.7.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybind11/2.7.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybind11/2.9.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybind11/2.10.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybind11/2.11.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pybind11/2.4.3-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "PyCairo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyCairo/1.20.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyCairo/1.20.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyCairo/1.21.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyCairo/1.18.2-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PyCairo/1.20.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyCalib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyCalib/0.1.0.dev0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyCalib/20230531-gfbf-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pycocotools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pycocotools/2.0.4-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pycocotools/2.0.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "pycocotools/2.0.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "pydantic": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pydantic/1.10.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pydicom": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pydicom/2.1.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pydicom/2.2.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pydicom/2.3.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pydicom/1.4.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "pydot": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pydot/1.4.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pydot/1.4.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pydot/1.4.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pydot/1.4.2-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pyEGA3": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pyEGA3/4.0.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pyfaidx": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pyfaidx/0.6.3.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyfaidx/0.7.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyfaidx/0.7.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pyfaidx/0.7.2.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pyfaidx/0.5.9.5-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyfaidx/0.5.9.5-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pyGenomeTracks": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pyGenomeTracks/3.7-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyGenomeTracks/3.8-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyGObject": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyGObject/3.42.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pyiron": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pyiron/0.2.6-hpcugent-2023-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pyiron/0.2.6-hpcugent-2020-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik"], "pyiron/0.2.6-hpcugent-2021-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "swalot"], "pyiron/0.2.6-hpcugent-2022b-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "swalot"], "pyiron/0.2.6-hpcugent-2022-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "swalot"], "pyiron/0.2.6-hpcugent-2022c-intel-2020a-Python-3.8.2": ["skitty", "victini"]}}, "PyKeOps": {"clusters": ["accelgor", "joltik"], "versions": {"PyKeOps/2.0-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"]}}, "pymatgen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pymatgen/2022.9.21-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pymatgen/2022.0.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyMC3": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"PyMC3/3.11.1-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PyMC3/3.8-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "PyMC3/3.8-intel-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"], "PyMC3/3.11.1-intel-2020b": ["donphan", "joltik", "skitty", "swalot", "victini"], "PyMC3/3.11.1-fosscuda-2020b": ["joltik"]}}, "PyMOL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyMOL/2.5.0-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pyobjcryst": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pyobjcryst/2.2.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyobjcryst/2.1.0.post2-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyobjcryst/2.2.1-intel-2020a-Python-3.8.2": ["skitty", "victini"]}}, "pyodbc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pyodbc/4.0.39-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Pyomo": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Pyomo/6.4.2-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "PyOpenCL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyOpenCL/2021.2.13-foss-2021b-CUDA-11.4.1": ["accelgor", "joltik"], "PyOpenCL/2021.1.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyOpenGL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyOpenGL/3.1.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PyOpenGL/3.1.6-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyOpenGL/3.1.7-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyOpenGL/3.1.5-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyOpenGL/3.1.5-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pyproj": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pyproj/3.3.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyproj/3.4.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pyproj/3.5.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pyproj/2.4.2-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "pyproj/2.6.1.post1-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyproj/3.0.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyQt5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyQt5/5.15.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyQt5/5.15.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyQt5/5.15.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyQt5/5.15.1-GCCcore-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PyQt5/5.15.4-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "PyQtGraph": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyQtGraph/0.13.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyQtGraph/0.12.3-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Pysam": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Pysam/0.16.0.1-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pysam/0.16.0.1-GCC-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pysam/0.17.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pysam/0.18.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pysam/0.19.1-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pysam/0.21.0-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pysam/0.15.3-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pysam/0.15.3-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pysam/0.16.0.1-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pysam/0.16.0.1-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pysam/0.16.0.1-GCC-10.2.0-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Pysam/0.16.0.1-iccifort-2020.1.217": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Pysam/0.16.0.1-iccifort-2020.4.304": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PySCF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PySCF/1.7.6-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PySCF/1.7.6-gomkl-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PySCF/2.1.1-foss-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pyspoa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pyspoa/0.0.8-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyspoa/0.0.8-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyspoa/0.0.9-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pyspoa/0.0.4-GCC-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyspoa/0.0.8-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyTables": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyTables/3.6.1-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyTables/3.6.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyTables/3.6.1-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyTables/3.8.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyTables/3.5.2-intel-2019b-Python-2.7.16": ["doduo", "skitty", "victini"], "PyTables/3.6.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "PyTables/3.6.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PyTables/3.6.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyTables/3.6.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PyTables/3.6.1-fosscuda-2020b": ["joltik"]}}, "pytest-xdist": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pytest-xdist/2.3.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pytest-xdist/2.3.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "pytest-xdist/2.5.0-GCCcore-11.2.0": ["accelgor", "donphan", "joltik"], "pytest-xdist/2.5.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Python-bundle-PyPI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Python-bundle-PyPI/2023.06-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "python-igraph": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"python-igraph/0.9.6-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "python-igraph/0.9.8-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "python-igraph/0.10.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "python-igraph/0.8.0-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "python-igraph/0.9.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "python-igraph/0.9.0-fosscuda-2020b": ["joltik"]}}, "python-irodsclient": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"python-irodsclient/1.1.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "python-irodsclient/1.1.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "python-isal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"python-isal/0.11.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "python-isal/0.11.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "python-isal/1.1.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "python-isal/0.11.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "python-louvain": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"python-louvain/0.16-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "python-parasail": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"python-parasail/1.2.4-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "python-parasail/1.2.4-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "python-parasail/1.3.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "python-parasail/1.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "python-parasail/1.2-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "python-parasail/1.2.2-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "python-parasail/1.2.4-fosscuda-2020b": ["joltik"]}}, "python-telegram-bot": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"python-telegram-bot/20.0a0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Python/2.7.16-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Python/2.7.18-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/2.7.18-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/2.7.18-GCCcore-10.3.0-bare": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/2.7.18-GCCcore-11.2.0-bare": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/2.7.18-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/2.7.18-GCCcore-11.3.0-bare": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/2.7.18-GCCcore-12.2.0-bare": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.7.4-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.8.2-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.8.6-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.9.5-GCCcore-10.3.0-bare": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.9.5-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.9.6-GCCcore-11.2.0-bare": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.9.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.10.4-GCCcore-11.3.0-bare": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.10.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.10.8-GCCcore-12.2.0-bare": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.10.8-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/3.11.3-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Python/2.7.15-GCCcore-8.2.0": ["doduo", "swalot"], "Python/3.7.2-GCCcore-8.2.0": ["doduo", "swalot"]}}, "PyTorch-Lightning": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyTorch-Lightning/1.5.9-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "PyTorch-Lightning/1.5.9-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyTorch-Lightning/1.8.4-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "PyTorch-Lightning/1.8.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyTorch": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyTorch/1.7.1-fosscuda-2020b": ["accelgor", "joltik"], "PyTorch/1.8.1-fosscuda-2020b": ["accelgor"], "PyTorch/1.9.0-fosscuda-2020b": ["accelgor"], "PyTorch/1.10.0-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "PyTorch/1.10.0-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyTorch/1.10.0-fosscuda-2020b": ["accelgor"], "PyTorch/1.11.0-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "PyTorch/1.12.0-foss-2022a-CUDA-11.7.0": ["accelgor", "donphan", "joltik"], "PyTorch/1.12.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyTorch/1.12.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "skitty", "swalot", "victini"], "PyTorch/1.3.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "PyTorch/1.4.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "PyTorch/1.6.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "PyTorch/1.7.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyTorch/1.12.1-foss-2021b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyTorch/1.12.1-foss-2022a-CUDA-11.7.0": ["donphan", "joltik"]}}, "PyVCF3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyVCF3/1.0.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pyWannier90": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pyWannier90/2021-12-07-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pyWannier90/2021-12-07-gomkl-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "PyWBGT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyWBGT/1.0.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyWBGT/1.0.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyYAML": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyYAML/5.3-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyYAML/5.3.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyYAML/5.4.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyYAML/5.4.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyYAML/6.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyYAML/6.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyYAML/5.1.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "QCA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"QCA/2.3.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "QD": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"QD/2.3.17-NVHPC-21.2-20160110": ["accelgor", "donphan", "joltik"]}}, "QGIS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"QGIS/3.28.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Qhull": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Qhull/2020.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Qhull/2020.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Qhull/2020.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Qhull/2020.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "QIIME2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"QIIME2/2022.11": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "QIIME2/2020.8": ["doduo", "donphan", "joltik", "skitty", "victini"], "QIIME2/2020.11": ["doduo", "donphan", "joltik", "skitty", "victini"], "QIIME2/2019.7": ["skitty", "victini"], "QIIME2/2021.8": ["skitty", "victini"]}}, "qnorm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"qnorm/0.8.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "QScintilla": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"QScintilla/2.11.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Qt5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Qt5/5.13.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Qt5/5.14.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Qt5/5.15.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Qt5/5.15.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Qt5/5.15.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Qt5/5.15.7-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Qt5/5.14.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Qt5Webkit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Qt5Webkit/5.212.0-alpha4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Qtconsole": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Qtconsole/5.3.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Qtconsole/5.4.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Qtconsole/5.0.2-foss-2020b": ["doduo"], "Qtconsole/5.0.2-GCCcore-10.2.0": ["donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "QtKeychain": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"QtKeychain/0.13.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "QtPy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"QtPy/2.2.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "QtPy/2.3.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "QtPy/1.9.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "QuantumESPRESSO": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"QuantumESPRESSO/7.0-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "QuantumESPRESSO/6.5-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "QUAST": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"QUAST/5.2.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "QUAST/5.0.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "QUAST/5.0.2-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "QUAST/5.0.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "QuickFF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"QuickFF/2.2.7-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "QuickFF/2.2.4-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Qwt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Qwt/6.2.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Qwt/6.1.4-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Qwt/6.2.0-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "R-bundle-Bioconductor": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R-bundle-Bioconductor/3.14-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R-bundle-Bioconductor/3.10-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "R": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"R/4.0.3-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R/4.1.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R/4.2.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R/4.2.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R/4.2.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R/3.6.2-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "R/4.0.0-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "R/4.0.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R/4.0.5-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R/4.1.0-foss-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "R/3.6.3-foss-2020a": ["donphan", "joltik", "skitty", "victini"], "R/4.0.3-fosscuda-2020b": ["joltik"], "R/4.0.4-fosscuda-2020b": ["joltik"], "R/4.0.5-fosscuda-2020b": ["joltik"]}}, "R2jags": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"R2jags/0.7-1-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Racon": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Racon/1.4.21-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Racon/1.5.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Racon/1.5.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Racon/1.4.13-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Racon/1.4.13-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Racon/1.4.21-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "RapidJSON": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RapidJSON/1.1.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "RapidJSON/1.1.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "RapidJSON/1.1.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "RapidJSON/1.1.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "rasterio": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"rasterio/1.2.10-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "rasterio/1.3.8-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "rasterio/1.1.7-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Raven": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Raven/1.8.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "RAxML": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"RAxML/8.2.12-iimpi-2021b-hybrid-avx2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "RAxML/8.2.12-iimpi-2019b-hybrid-avx2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Ray-project": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Ray-project/1.13.0-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Ray-project/1.13.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Ray-project/0.8.4-foss-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"]}}, "RDFlib": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"RDFlib/6.2.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "RDFlib/4.2.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "RDFlib/5.0.0-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "RDKit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RDKit/2022.03.5-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "RDKit/2022.09.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "RDKit/2020.03.3-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "RDKit/2020.09.3-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "RDP-Classifier": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"RDP-Classifier/2.13-Java-11": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "RDP-Classifier/2.12-Java-1.8": ["skitty", "victini"]}}, "RE2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RE2/2022-02-01-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "RE2/2022-06-01-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "RE2/2023-03-01-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "re2c": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"re2c/1.2.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "re2c/2.0.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "re2c/2.1.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "re2c/2.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "re2c/2.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "re2c/3.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "re2c/1.3-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "redis-py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"redis-py/4.3.1-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "redis-py/4.3.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "redis-py/4.5.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Redis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Redis/6.2.6-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Redis/6.2.6-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Redis/7.0.8-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ReFrame": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ReFrame/4.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ReFrame/3.5.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ReFrame/3.9.1": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ReFrame/3.11.1": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ReFrame/3.11.2": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "regionmask": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"regionmask/0.10.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "RegTools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RegTools/0.5.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "RegTools/1.0.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "RegTools/0.4.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "RegTools/0.5.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "RepeatMasker": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RepeatMasker/4.1.2-p1-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ResistanceGA": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ResistanceGA/4.2-5-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "RevBayes": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RevBayes/1.1.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "RevBayes/1.2.1-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Rgurobi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Rgurobi/9.5.0-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "RheoTool": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"RheoTool/5.0-foss-2019b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "rioxarray": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"rioxarray/0.11.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "rjags": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"rjags/4-10-foss-2020b-R-4.0.3": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "rjags/4-13-foss-2021b-R-4.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "rjags/4-13-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "RLCard": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"RLCard/1.0.9-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "RMBlast": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RMBlast/2.11.0-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ROOT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ROOT/6.24.06-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ROOT/6.26.06-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ROOT/6.20.04-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "rpy2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"rpy2/3.4.5-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "rpy2/3.5.10-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "rpy2/3.2.6-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "RSEM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RSEM/1.3.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "RSeQC": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"RSeQC/4.0.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "RSeQC/4.0.0-foss-2020a-Python-3.8.2": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "RStudio-Server": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RStudio-Server/2022.02.0-443-rhel-x86_64": ["accelgor", "doduo", "donphan", "gallade", "joltik", "swalot", "victini"], "RStudio-Server/1.3.959-foss-2020a-Java-11-R-4.0.0": ["skitty", "victini"]}}, "ruamel.yaml": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ruamel.yaml/0.17.21-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ruamel.yaml/0.17.21-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Ruby": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Ruby/3.0.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Ruby/3.0.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ruffus": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ruffus/2.8.4-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Rust": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Rust/1.52.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Rust/1.54.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Rust/1.56.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Rust/1.60.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Rust/1.60.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Rust/1.65.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Rust/1.65.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Rust/1.70.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Rust/1.42.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Rust/1.52.1-GCCcore-10.2.0": ["donphan", "joltik"]}}, "Sabre": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Sabre/2013-09-28-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Salmon": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Salmon/1.9.0-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Salmon/1.1.0-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "Salmon/1.4.0-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "samclip": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"samclip/0.4.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "samclip/0.4.0-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SAMtools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SAMtools/1.11-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SAMtools/1.13-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SAMtools/1.13-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SAMtools/1.14-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SAMtools/1.15-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SAMtools/1.16.1-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SAMtools/1.17-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SAMtools/0.1.20-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "SAMtools/0.1.20-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "SAMtools/1.10-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SAMtools/1.10-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SAMtools/1.10-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Satsuma2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Satsuma2/20220304-GCC-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SBCL": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SBCL/2.2.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ScaFaCoS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ScaFaCoS/1.0.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ScaFaCoS/1.0.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ScaFaCoS/1.0.1-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ScaLAPACK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ScaLAPACK/2.0.2-gompi-2019b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ScaLAPACK/2.1.0-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ScaLAPACK/2.1.0-gompi-2021a-fb": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ScaLAPACK/2.1.0-gompi-2021b-fb": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ScaLAPACK/2.1.0-gompic-2020b": ["accelgor", "joltik"], "ScaLAPACK/2.2.0-gompi-2022a-fb": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ScaLAPACK/2.2.0-gompi-2022b-fb": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ScaLAPACK/2.2.0-gompi-2023a-fb": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ScaLAPACK/2.1.0-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ScaLAPACK/2.1.0-gompi-2020b-bf": ["doduo"], "ScaLAPACK/2.1.0-iimpi-2020b-bf": ["doduo"]}}, "scanpy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"scanpy/1.8.1-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scanpy/1.8.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scanpy/1.9.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scanpy/1.9.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scanpy/1.8.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "scArches": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"scArches/0.5.6-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "scArches/0.5.6-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "sceasy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"sceasy/0.0.7-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SCGid": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SCGid/0.9b0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "scHiCExplorer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"scHiCExplorer/7-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "scib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"scib/1.1.3-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "scikit-build": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"scikit-build/0.11.1-fosscuda-2020b": ["accelgor", "joltik"], "scikit-build/0.11.1-GCCcore-10.3.0": ["accelgor", "donphan", "joltik"], "scikit-build/0.15.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-build/0.17.6-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-build/0.11.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "scikit-image": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"scikit-image/0.18.1-fosscuda-2020b": ["accelgor", "joltik"], "scikit-image/0.18.3-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "scikit-image/0.19.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-image/0.19.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-image/0.16.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "scikit-image/0.16.2-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "scikit-image/0.17.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "scikit-image/0.18.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "scikit-learn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"scikit-learn/0.23.1-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-learn/0.23.2-fosscuda-2020b": ["accelgor", "joltik"], "scikit-learn/0.24.2-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-learn/1.0.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-learn/1.0.1-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "scikit-learn/1.1.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-learn/1.1.2-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-learn/1.2.1-gfbf-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-learn/0.20.4-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-learn/0.20.4-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "scikit-learn/0.21.3-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "scikit-learn/0.21.3-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "scikit-learn/0.23.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "scikit-learn/0.23.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "scikit-learn/0.23.2-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "scikit-misc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"scikit-misc/0.1.4-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "scikit-optimize": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"scikit-optimize/0.9.0-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SciPy-bundle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SciPy-bundle/2019.10-foss-2019b-Python-3.7.4": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2020.03-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2020.11-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2020.11-fosscuda-2020b": ["accelgor", "joltik"], "SciPy-bundle/2021.05-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2021.05-gomkl-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2021.10-foss-2021b-Python-2.7.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2021.10-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2021.10-intel-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2022.05-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2022.05-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2023.02-gfbf-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2023.07-gfbf-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2019.10-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2019.10-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2019.10-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2020.03-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2020.03-intel-2020a-Python-2.7.18": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2020.03-iomkl-2020a-Python-3.8.2": ["doduo"], "SciPy-bundle/2020.11-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2020.11-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2021.05-intel-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SciPy-bundle/2020.03-foss-2020a-Python-2.7.18": ["donphan", "joltik", "skitty", "victini"], "SciPy-bundle/2020.11-intelcuda-2020b": ["joltik"]}}, "SCons": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SCons/4.2.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SCons/3.1.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "SCons/3.1.2-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SCons/4.1.0.post1-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SCons/4.1.0.post1-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SCons/4.4.0-GCCcore-11.3.0": ["donphan", "joltik"]}}, "SCopeLoomR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SCopeLoomR/0.13.0-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SCOTCH": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SCOTCH/6.0.9-gompi-2019b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SCOTCH/6.1.0-gompi-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SCOTCH/6.1.0-gompi-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SCOTCH/6.1.2-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SCOTCH/6.1.2-iimpi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SCOTCH/7.0.1-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SCOTCH/6.0.9-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SCOTCH/6.0.9-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "SCOTCH/6.0.9-iimpi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SCOTCH/6.1.0-iimpi-2020b": ["doduo"], "SCOTCH/6.1.0-iimpi-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "scPred": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"scPred/1.9.2-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "scvi-tools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"scvi-tools/0.16.4-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "scvi-tools/0.16.4-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SDL2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SDL2/2.0.20-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SDL2/2.0.14-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SDL2/2.0.14-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Seaborn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Seaborn/0.11.1-fosscuda-2020b": ["accelgor", "joltik"], "Seaborn/0.11.2-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Seaborn/0.11.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Seaborn/0.12.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Seaborn/0.12.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Seaborn/0.9.1-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Seaborn/0.10.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Seaborn/0.10.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "Seaborn/0.10.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Seaborn/0.10.1-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Seaborn/0.10.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Seaborn/0.11.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Seaborn/0.11.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SELFIES": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SELFIES/2.1.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SentencePiece": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SentencePiece/0.1.96-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SentencePiece/0.1.97-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SentencePiece/0.1.85-GCC-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik"]}}, "SEPP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SEPP/4.5.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SEPP/4.5.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SEPP/4.3.10-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "SEPP/4.4.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SeqAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SeqAn/2.4.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SeqAn/2.4.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "SeqAn/2.4.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "seqtk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"seqtk/1.3-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "seqtk/1.3-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "seqtk/1.3-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Serf": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Serf/1.3.9-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "setuptools-rust": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"setuptools-rust/1.6.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Seurat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Seurat/4.2.0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Seurat/4.3.0-foss-2021b-R-4.1.2": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Seurat/4.3.0-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Seurat/3.1.5-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Seurat/4.0.1-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SeuratDisk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SeuratDisk/0.0.0.9020-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SHAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SHAP/0.41.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Shapely": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Shapely/1.8a1-GCC-10.3.0": ["accelgor", "joltik"], "Shapely/1.8.1.post1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Shapely/1.8.2-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Shapely/1.8.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Shapely/2.0.1-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Shapely/1.7.0-iccifort-2019.5.281-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "Shapely/1.7.1-GCC-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Shapely/1.8a1-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Shapely/1.8a1-iccifort-2020.4.304": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Short-Pair": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Short-Pair/20170125-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "shovill": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"shovill/1.1.0-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "silhouetteRank": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"silhouetteRank/1.0.5.13-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SimPEG": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SimPEG/0.18.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SimPEG/0.18.1-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SimPEG/0.14.1-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SimpleITK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SimpleITK/2.1.0-fosscuda-2020b": ["accelgor", "joltik"], "SimpleITK/2.1.1.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SimpleITK/1.2.4-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "SimpleITK/2.1.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SISSO++": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SISSO++/1.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SISSO": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SISSO/3.0.2-iimpi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SISSO/3.1-20220324-iimpi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SKESA": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SKESA/2.4.0-gompi-2021b_saute.1.3.0_1": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SlamDunk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SlamDunk/0.4.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SLEPc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SLEPc/3.17.2-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SLEPc/3.18.2-intel-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SLEPc/3.12.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SLEPc/3.12.2-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "SLEPc/3.15.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SLEPc/3.12.2-intel-2019b-Python-3.7.4": ["donphan", "joltik"]}}, "slow5tools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"slow5tools/0.4.0-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SMAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SMAP/4.6.5-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SMC++": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SMC++/1.15.4-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "smfishHmrf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"smfishHmrf/1.3.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "smooth-topk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "smooth-topk/1.0-20210817-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "snakemake": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"snakemake/6.10.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "snakemake/7.18.2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "snakemake/7.22.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "snakemake/5.26.1-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "snakemake/6.1.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SNAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SNAP/2.0.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SNAP/2.0.1-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "snappy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"snappy/1.1.7-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "snappy/1.1.8-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "snappy/1.1.8-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "snappy/1.1.9-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "snappy/1.1.9-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "snappy/1.1.9-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "snappy/1.1.8-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Sniffles": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Sniffles/2.0.7-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SoX": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"SoX/14.4.2-GCCcore-11.3.0": ["accelgor", "donphan", "joltik"], "SoX/14.4.2-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "spaCy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"spaCy/3.4.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SPAdes": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SPAdes/3.15.3-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SPAdes/3.15.4-GCC-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SPAdes/3.15.5-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SPAdes/3.14.1-GCC-9.3.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SPAdes/3.15.2-GCC-10.2.0-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SPAdes/3.15.2-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "spaln": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"spaln/2.4.12-GCC-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "spaln/2.4.12-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "spaln/2.4.13f-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "spaln/2.4.03-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Spark": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Spark/3.2.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Spark/2.4.5-intel-2019b-Python-3.7.4-Java-1.8": ["doduo", "donphan", "joltik"], "Spark/3.1.1-fosscuda-2020b": ["joltik"]}}, "sparse-neighbors-search": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"sparse-neighbors-search/0.7-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SpatialDE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SpatialDE/1.1.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "spglib-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"spglib-python/1.16.0-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "spglib-python/1.16.1-gomkl-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "spglib-python/1.16.3-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "spglib-python/1.16.3-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "spglib-python/2.0.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "spglib-python/2.0.0-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "spglib-python/1.16.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "spglib-python/1.16.0-fosscuda-2020b": ["joltik"]}}, "SPM": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SPM/12.5_r7771-MATLAB-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "spoa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"spoa/4.0.7-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "spoa/4.0.7-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "spoa/4.0.7-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "spoa/3.4.0-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "spoa/4.0.0-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "spoa/4.0.7-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SPOTPY": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SPOTPY/1.5.14-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SQLite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SQLite/3.29.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SQLite/3.31.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SQLite/3.33.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SQLite/3.35.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SQLite/3.36-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SQLite/3.38.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SQLite/3.39.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SQLite/3.42.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SQLite/3.27.2-GCCcore-8.2.0": ["doduo", "swalot"]}}, "SqueezeMeta": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SqueezeMeta/1.5.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Squidpy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Squidpy/1.2.2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SRA-Toolkit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SRA-Toolkit/3.0.0-centos_linux64": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SRA-Toolkit/3.0.0-gompi-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SRA-Toolkit/3.0.3-gompi-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SRA-Toolkit/2.9.6-1-centos_linux64": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SRA-Toolkit/2.10.4-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "SRA-Toolkit/2.10.8-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SRA-Toolkit/2.10.9-gompi-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "STAR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"STAR/2.7.9a-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "STAR/2.7.10b-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "STAR/2.7.2b-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "STAR/2.7.3a-GCC-8.3.0": ["doduo", "donphan", "joltik"], "STAR/2.7.4a-GCC-9.3.0": ["doduo", "donphan", "joltik", "swalot"], "STAR/2.7.6a-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "stardist": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"stardist/0.8.3-foss-2021b-CUDA-11.4.1": ["accelgor", "joltik"], "stardist/0.8.3-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "statsmodels": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"statsmodels/0.12.2-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "statsmodels/0.13.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "statsmodels/0.13.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "statsmodels/0.13.1-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "statsmodels/0.14.0-gfbf-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "statsmodels/0.9.0-intel-2019b-Python-2.7.16": ["doduo", "skitty", "victini"], "statsmodels/0.11.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "statsmodels/0.11.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "statsmodels/0.11.1-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "statsmodels/0.12.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "statsmodels/0.12.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "statsmodels/0.12.1-fosscuda-2020b": ["joltik"]}}, "STRique": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"STRique/0.4.2-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Structure_threader": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Structure_threader/1.3.10-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SuAVE-biomat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SuAVE-biomat/2.0.0-20230815-intel-2023a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Subversion": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Subversion/1.14.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SuiteSparse": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SuiteSparse/5.6.0-foss-2019b-METIS-5.1.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SuiteSparse/5.8.1-foss-2020b-METIS-5.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SuiteSparse/5.10.1-foss-2021a-METIS-5.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SuiteSparse/5.10.1-foss-2021b-METIS-5.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SuiteSparse/5.10.1-intel-2021b-METIS-5.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SuiteSparse/5.13.0-foss-2022a-METIS-5.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "SuiteSparse/5.7.1-foss-2020a-METIS-5.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SuiteSparse/5.7.1-intel-2020a-METIS-5.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SUNDIALS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SUNDIALS/6.2.0-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SUNDIALS/5.1.0-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SUNDIALS/5.1.0-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "SUNDIALS/5.7.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SUNDIALS/5.7.0-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SUNDIALS/5.7.0-fosscuda-2020b": ["joltik"]}}, "SuperLU_DIST": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SuperLU_DIST/8.1.0-foss-2022a": ["accelgor"], "SuperLU_DIST/5.4.0-intel-2020a-trisolve-merge": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SVIM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SVIM/2.0.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SWIG": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SWIG/4.0.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SWIG/4.0.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SWIG/4.0.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SWIG/4.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SWIG/4.0.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "SWIG/3.0.12-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "SWIG/4.0.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "sympy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"sympy/1.9-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "sympy/1.9-intel-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "sympy/1.10.1-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "sympy/1.10.1-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "sympy/1.11.1-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "sympy/1.11.1-intel-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "sympy/1.5.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "sympy/1.6.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "sympy/1.7.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "synthcity": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"synthcity/0.2.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Szip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Szip/2.1.1-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Szip/2.1.1-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Szip/2.1.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Szip/2.1.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Szip/2.1.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Szip/2.1.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Szip/2.1.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "TAMkin": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"TAMkin/1.2.6-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "task-spooler": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"task-spooler/1.0.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "tbb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"tbb/2020.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "tbb/2021.5.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tbb/2019_U9-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "tbb/2020.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "tbb/2020.3-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tbb/2020.3-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Tcl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Tcl/8.6.9-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tcl/8.6.10-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tcl/8.6.10-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tcl/8.6.11-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tcl/8.6.11-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tcl/8.6.12-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tcl/8.6.12-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tcl/8.6.13-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tcl/8.6.9-GCCcore-8.2.0": ["doduo", "swalot"]}}, "tcsh": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"tcsh/6.22.04-GCCcore-10.3.0": ["accelgor", "joltik"], "tcsh/6.22.02-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "tcsh/6.22.03-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "TELEMAC-MASCARET": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"TELEMAC-MASCARET/8p3r1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "tensorboard": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"tensorboard/2.8.0-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tensorboard/2.10.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "tensorboardX": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"tensorboardX/2.5.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tensorboardX/2.2-foss-2020b-PyTorch-1.7.1": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tensorboardX/2.1-fosscuda-2020b-PyTorch-1.7.1": ["joltik"], "tensorboardX/2.2-fosscuda-2020b-PyTorch-1.7.1": ["joltik"]}}, "TensorFlow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"TensorFlow/2.4.1-foss-2020b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "TensorFlow/2.4.1-fosscuda-2020b": ["accelgor", "joltik"], "TensorFlow/2.5.0-fosscuda-2020b": ["accelgor", "joltik"], "TensorFlow/2.5.3-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "TensorFlow/2.6.0-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1": ["accelgor", "joltik"], "TensorFlow/2.7.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0": ["accelgor", "donphan", "joltik"], "TensorFlow/2.11.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "TensorFlow/1.15.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "TensorFlow/2.1.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "TensorFlow/2.2.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "TensorFlow/2.2.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "TensorFlow/2.2.3-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "TensorFlow/2.3.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "TensorFlow/2.5.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "TensorFlow/2.6.0-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "TensorFlow/2.8.4-foss-2021b": ["gallade"]}}, "Theano": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Theano/1.1.2-fosscuda-2020b-PyMC": ["accelgor", "joltik"], "Theano/1.1.2-intel-2021b-PyMC": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Theano/1.0.4-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "Theano/1.1.2-foss-2020b-PyMC": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Theano/1.0.4-intel-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"], "Theano/1.1.2-intel-2020b-PyMC": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "tidymodels": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"tidymodels/1.1.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "timm": {"clusters": ["accelgor", "joltik"], "versions": {"timm/0.6.13-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "timm/0.9.2-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"]}}, "Tk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Tk/8.6.10-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tk/8.6.10-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tk/8.6.11-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tk/8.6.11-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tk/8.6.12-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tk/8.6.12-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tk/8.6.9-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Tkinter": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Tkinter/3.8.2-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tkinter/3.8.6-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tkinter/3.9.5-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tkinter/3.9.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tkinter/3.10.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tkinter/3.10.8-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tkinter/2.7.16-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Tkinter/2.7.18-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Tkinter/2.7.18-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Tkinter/3.7.4-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "TOBIAS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"TOBIAS/0.12.12-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Togl": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Togl/2.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "tokenizers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"tokenizers/0.12.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "tokenizers/0.13.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "TOPAS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"TOPAS/3.9-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "TopHat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"TopHat/2.1.2-GCC-11.3.0-Python-2.7.18": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "TopHat/2.1.2-GCC-10.2.0-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "TopHat/2.1.2-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "TopHat/2.1.2-iimpi-2020a": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "torchaudio": {"clusters": ["accelgor", "joltik"], "versions": {"torchaudio/0.12.0-foss-2022a-PyTorch-1.12.0-CUDA-11.7.0": ["accelgor", "joltik"]}}, "torchtext": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"torchtext/0.14.1-foss-2022a-PyTorch-1.12.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "torchvf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"torchvf/0.1.3-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "torchvf/0.1.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "torchvision": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"torchvision/0.8.2-fosscuda-2020b-PyTorch-1.7.1": ["accelgor", "joltik"], "torchvision/0.11.1-foss-2021a-CUDA-11.3.1": ["accelgor", "joltik"], "torchvision/0.13.1-foss-2022a-CUDA-11.7.0": ["accelgor", "joltik"], "torchvision/0.13.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "torchvision/0.8.2-foss-2020b-PyTorch-1.7.1": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "torchvision/0.11.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "torchvision/0.11.3-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "torchvision/0.7.0-foss-2019b-Python-3.7.4-PyTorch-1.6.0": ["donphan", "joltik", "skitty", "victini"]}}, "tqdm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"tqdm/4.47.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tqdm/4.56.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tqdm/4.61.2-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tqdm/4.62.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tqdm/4.64.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tqdm/4.64.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tqdm/4.41.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "tqdm/4.60.0-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Transformers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Transformers/4.20.1-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Transformers/4.21.1-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Transformers/4.24.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Transformers/4.30.2-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "TreeMix": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"TreeMix/1.13-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "TRF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"TRF/4.09.1-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "TRF/4.09.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "TRF/4.09-linux64": ["skitty", "victini"]}}, "trimAl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"trimAl/1.4.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Trimmomatic": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Trimmomatic/0.39-Java-11": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Trimmomatic/0.38-Java-1.8": ["skitty", "victini"]}}, "Trinity": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Trinity/2.15.1-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Trinity/2.8.5-GCC-8.3.0-Java-11": ["doduo", "donphan", "joltik", "skitty", "victini"], "Trinity/2.9.1-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "Trinity/2.10.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "TRUST4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"TRUST4/1.0.6-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "TurboVNC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"TurboVNC/2.2.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "TurboVNC/2.2.3-GCCcore-8.2.0": ["doduo", "swalot"]}}, "typing-extensions": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"typing-extensions/3.7.4.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "typing-extensions/3.10.0.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "typing-extensions/3.10.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "typing-extensions/4.3.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "UCC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"UCC/1.0.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UCC/1.1.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UCC/1.2.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "UCX-CUDA": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"UCX-CUDA/1.10.0-GCCcore-10.3.0-CUDA-11.3.1": ["accelgor", "joltik"], "UCX-CUDA/1.11.2-GCCcore-11.2.0-CUDA-11.4.1": ["accelgor", "joltik"], "UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0": ["accelgor", "donphan", "joltik"]}}, "UCX": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"UCX/1.8.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UCX/1.9.0-GCCcore-10.2.0-CUDA-11.1.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UCX/1.9.0-GCCcore-10.2.0-CUDA-11.2.1": ["accelgor", "donphan", "joltik"], "UCX/1.9.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UCX/1.10.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UCX/1.11.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UCX/1.12.1-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UCX/1.13.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UCX/1.14.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UCX/1.6.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "UDUNITS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"UDUNITS/2.2.26-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UDUNITS/2.2.28-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UDUNITS/2.2.28-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UDUNITS/2.2.28-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UDUNITS/2.2.26-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "UDUNITS/2.2.26-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "UDUNITS/2.2.26-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "UDUNITS/2.2.28-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "umap-learn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"umap-learn/0.5.3-foss-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "umap-learn/0.5.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "umap-learn/0.4.6-fosscuda-2020b": ["joltik"]}}, "uncertainty-calibration": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"uncertainty-calibration/0.0.9-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Unidecode": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Unidecode/1.3.6-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Unidecode/1.1.1-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "unixODBC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"unixODBC/2.3.11-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "UnZip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"UnZip/6.0-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UnZip/6.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UnZip/6.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UnZip/6.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UnZip/6.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UnZip/6.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "UnZip/6.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "USEARCH": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"USEARCH/11.0.667-i86linux32": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "utf8proc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"utf8proc/2.6.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "utf8proc/2.7.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "utf8proc/2.8.0-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "util-linux": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"util-linux/2.34-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "util-linux/2.35-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "util-linux/2.36-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "util-linux/2.36-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "util-linux/2.37-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "util-linux/2.38-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "util-linux/2.38.1-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "util-linux/2.39-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "util-linux/2.33-GCCcore-8.2.0": ["doduo", "swalot"]}}, "Valgrind": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Valgrind/3.17.0-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Valgrind/3.18.1-gompi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Valgrind/3.18.1-iimpi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Valgrind/3.19.0-gompi-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Valgrind/3.20.0-gompi-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "VarScan": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"VarScan/2.4.4-Java-11": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "VASP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"VASP/5.4.4-iomkl-2020b-vtst-176-mt-20180516": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VASP/6.2.1-NVHPC-21.2-CUDA-11.2.1": ["accelgor", "joltik"], "VASP/6.3.1-gomkl-2021a-VASPsol-20210413-vtst-184-Wannier90-3.1.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VASP/6.3.1-NVHPC-21.2-CUDA-11.2.1": ["accelgor", "joltik"], "VASP/6.4.1-NVHPC-21.2-CUDA-11.2.1": ["accelgor", "donphan", "joltik"], "VASP/6.4.2-NVHPC-21.2-CUDA-11.2.1": ["accelgor", "donphan", "joltik"], "VASP/5.4.4-intel-2019b-mt-20180516-ncl": ["doduo", "donphan", "joltik", "skitty", "victini"], "VASP/5.4.4-intel-2019b-mt-20180516": ["doduo", "donphan", "joltik", "skitty", "victini"], "VASP/6.1.2-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "victini"], "VASP/6.1.2-gomkl-2020a": ["doduo", "donphan", "gallade", "joltik", "skitty", "victini"], "VASP/6.1.2-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "victini"], "VASP/6.2.0-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "VASP/6.2.0-gomkl-2020a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VASP/6.2.0-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "VASP/6.2.1-gomkl-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VASP/6.3.0-gomkl-2021a-VASPsol-20210413": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VASP/6.3.1-gomkl-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VASP/6.4.1-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VASP/6.4.1-gomkl-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VASP/6.4.2-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VASP/6.4.2-gomkl-2021a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "vConTACT2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"vConTACT2/0.11.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "velocyto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"velocyto/0.17.17-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "velocyto/0.17.17-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Velvet": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Velvet/1.2.10-GCC-11.2.0-mt-kmer_191": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Velvet/1.2.10-GCC-8.3.0-mt-kmer_191": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "VEP": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"VEP/105-GCC-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "VEP/107-GCC-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "VESTA": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"VESTA/3.5.8-gtk3": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "VirSorter2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"VirSorter2/2.2.4-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "virtualenv": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"virtualenv/20.23.1-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "vispr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"vispr/0.4.14-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "vitessce-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"vitessce-python/20230222-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "vitessceR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Voro++": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Voro++/0.4.6-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Voro++/0.4.6-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "Voro++/0.4.6-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Voro++/0.4.6-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Voro++/0.4.6-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "vsc-mympirun": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"vsc-mympirun/5.2.6": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "vsc-mympirun/5.2.7": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "vsc-mympirun/5.2.9": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "vsc-mympirun/5.2.10": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "vsc-mympirun/5.2.11": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "vsc-mympirun/5.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "vsc-mympirun/5.3.1": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "vsc-mympirun/5.1.0": ["doduo"], "vsc-mympirun/5.2.0": ["doduo"], "vsc-mympirun/5.2.2": ["doduo"], "vsc-mympirun/5.2.3": ["doduo"], "vsc-mympirun/5.2.4": ["doduo"], "vsc-mympirun/5.2.5": ["doduo", "swalot"]}}, "VSEARCH": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"VSEARCH/2.22.1-GCC-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VSEARCH/2.18.0-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "VTK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"VTK/9.0.1-fosscuda-2020b": ["accelgor", "joltik"], "VTK/9.1.0-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "VTK/9.2.0.rc2-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "VTK/9.2.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VTK/8.2.0-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "VTK/8.2.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "VTK/8.2.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "VTK/9.0.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "VTK/9.0.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "wandb": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"wandb/0.13.6-GCC-11.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Wannier90": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Wannier90/3.1.0-gomkl-2021a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Wannier90/3.1.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Wannier90/3.1.0-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Wannier90/3.1.0-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Wannier90/3.1.0-intel-2022a": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "Wayland": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Wayland/1.20.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Wayland/1.21.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Waylandpp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Waylandpp/1.0.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "WebKitGTK+": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"WebKitGTK+/2.27.4-GCC-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "WebKitGTK+/2.37.1-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "wget": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"wget/1.20.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "wget/1.20.3-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "wget/1.21.1-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "WhatsHap": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"WhatsHap/1.1-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "WhatsHap/1.4-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "WhatsHap/1.7-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "worker": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"worker/1.6.12-foss-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "worker/1.6.13-iimpi-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "worker/1.6.11-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "wpebackend-fdo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"wpebackend-fdo/1.13.1-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "wtdbg2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"wtdbg2/2.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "wxPython": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"wxPython/4.1.1-foss-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "wxPython/4.2.0-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "wxWidgets": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"wxWidgets/3.2.0-GCC-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "X11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"X11/20190717-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "X11/20200222-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "X11/20201008-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "X11/20210518-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "X11/20210802-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "X11/20220504-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "X11/20221110-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "X11/20230603-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "X11/20190311-GCCcore-8.2.0": ["doduo", "swalot"]}}, "x264": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"x264/20190925-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "x264/20201026-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "x264/20210414-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "x264/20210613-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "x264/20220620-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "x264/20191217-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "x265": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"x265/3.2-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "x265/3.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "x265/3.5-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "x265/3.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "x265/3.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "x265/3.3-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "xarray": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"xarray/0.20.1-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xarray/0.20.1-intel-2021b": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "xarray/2022.6.0-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xarray/2023.4.2-gfbf-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xarray/0.15.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "xarray/0.15.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "xarray/0.16.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "xarray/0.16.2-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "xarray/0.16.2-fosscuda-2020b": ["joltik"]}}, "XCFun": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"XCFun/2.1.1-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "XCFun/2.1.1-GCCcore-11.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "XCrySDen": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"XCrySDen/1.6.2-foss-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "XCrySDen/1.6.2-intel-2022a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Xerces-C++": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Xerces-C++/3.2.4-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "XGBoost": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"XGBoost/1.7.2-foss-2022a-CUDA-11.7.0": ["accelgor"], "XGBoost/1.7.2-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "XlsxWriter": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"XlsxWriter/1.4.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XlsxWriter/3.0.2-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XlsxWriter/3.0.8-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XlsxWriter/3.1.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "XML-Compile": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"XML-Compile/1.63-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "XML-LibXML": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"XML-LibXML/2.0207-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XML-LibXML/2.0207-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XML-LibXML/2.0201-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "XML-LibXML/2.0205-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "XML-LibXML/2.0206-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "xorg-macros": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"xorg-macros/1.19.2-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xorg-macros/1.19.2-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xorg-macros/1.19.2-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xorg-macros/1.19.3-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xorg-macros/1.19.3-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xorg-macros/1.19.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xorg-macros/1.19.3-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xorg-macros/1.20.0-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xorg-macros/1.19.2-GCCcore-8.2.0": ["doduo", "swalot"]}}, "Xvfb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Xvfb/1.20.9-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Xvfb/1.20.13-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Xvfb/21.1.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Xvfb/21.1.6-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Xvfb/1.20.8-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Xvfb/1.20.9-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Xvfb/1.20.11-GCCcore-10.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "xxd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"xxd/8.2.4220-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "xxd/8.2.4220-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xxd/9.0.1696-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "xxd/8.2.4220-GCCcore-10.2.0": ["gallade"], "xxd/8.2.4220-GCCcore-10.3.0": ["gallade"]}}, "XZ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"XZ/5.2.4-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XZ/5.2.5-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XZ/5.2.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XZ/5.2.5-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XZ/5.2.5-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XZ/5.2.5-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XZ/5.2.7-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XZ/5.4.2-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "XZ/5.2.4-GCCcore-8.2.0": ["doduo", "swalot"]}}, "YACS": {"clusters": ["accelgor", "joltik"], "versions": {"YACS/0.1.8-GCCcore-10.3.0": ["accelgor", "joltik"]}}, "yaff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"yaff/1.6.0-intel-2020a-Python-3.8.2": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "yaff/1.6.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "yaff/1.6.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Yambo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Yambo/5.1.2-intel-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "yaml-cpp": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"yaml-cpp/0.7.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "yaml-cpp/0.6.3-GCCcore-8.3.0": ["donphan", "joltik", "skitty", "victini"]}}, "Yasm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Yasm/1.3.0-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Yasm/1.3.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Yasm/1.3.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Yasm/1.3.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Yasm/1.3.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Yasm/1.3.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "YAXT": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"YAXT/0.9.1-gompi-2021a": ["accelgor", "doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "YAXT/0.6.2-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Z3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Z3/4.8.11-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Z3/4.8.12-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Z3/4.10.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Z3/4.12.2-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Z3/4.8.10-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Z3/4.8.9-GCCcore-9.3.0": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "zarr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"zarr/2.13.3-foss-2021b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zarr/2.13.3-foss-2022a": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zarr/2.16.0-foss-2022b": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ZeroMQ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ZeroMQ/4.3.2-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ZeroMQ/4.3.3-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ZeroMQ/4.3.4-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ZeroMQ/4.3.4-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ZeroMQ/4.3.4-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ZeroMQ/4.3.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "zfp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"zfp/1.0.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Zip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Zip/3.0-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Zip/3.0-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Zip/3.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Zip/3.0-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Zip/3.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Zip/3.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "zlib-ng": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"zlib-ng/2.0.7-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "zlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"zlib/1.2.11-GCCcore-8.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.11-GCCcore-9.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.11-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.11-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.11-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.11": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.12-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.12-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.12": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.13-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.13": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zlib/1.2.11-GCCcore-8.2.0": ["doduo", "swalot"]}}, "Zopfli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Zopfli/1.0.3-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "zstd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"zstd/1.4.4-GCCcore-8.3.0": ["accelgor", "joltik"], "zstd/1.4.5-GCCcore-10.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zstd/1.4.9-GCCcore-10.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zstd/1.5.0-GCCcore-11.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zstd/1.5.2-GCCcore-11.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zstd/1.5.2-GCCcore-12.2.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zstd/1.5.5-GCCcore-12.3.0": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "zstd/1.4.4-GCCcore-9.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ABINIT": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ABINIT/9.2.1-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ABINIT/9.4.1-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "ABINIT/9.10.3-intel-2022a": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "ABRA2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ABRA2/2.22-iccifort-2019.5.281": ["doduo"], "ABRA2/2.23-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ABRA2/2.23-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ABRicate": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"ABRicate/0.9.9-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "ABySS": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"ABySS/2.1.5-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "ACTC": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"ACTC/1.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ADMIXTURE": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ADMIXTURE/1.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "alevin-fry": {"clusters": ["doduo", "swalot"], "versions": {"alevin-fry/0.4.3-GCCcore-11.2.0": ["doduo", "swalot"]}}, "Altair-EDEM": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"Altair-EDEM/2021.2": ["doduo", "donphan", "joltik", "swalot"]}}, "AmberMini": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"AmberMini/16.16.0-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "AmberTools": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"AmberTools/20-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "antiSMASH": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"antiSMASH/5.1.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "antiSMASH/5.2.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "antiSMASH/6.0.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ANTLR": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ANTLR/2.7.7-GCCcore-8.3.0-Java-11": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ANTLR/2.7.7-GCCcore-10.3.0-Java-11": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ANTs": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"ANTs/2.3.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "anvio": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"anvio/6.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "any2fasta": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"any2fasta/0.4.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "any2fasta/0.4.2-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "aria2": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"aria2/1.35.0-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Arlequin": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"Arlequin/3.5.2.2-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "arrow": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"arrow/0.17.1-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Aspera-CLI": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"Aspera-CLI/3.9.6.1467.159c5b1": ["doduo", "donphan", "joltik"]}}, "attrdict": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"attrdict/2.0.1-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "augur": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"augur/7.0.2-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "AutoGeneS": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"AutoGeneS/1.0.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "AutoMap": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"AutoMap/1.0-foss-2019b-20200324": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "babl": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"babl/0.1.86-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "bam-readcount": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"bam-readcount/0.8.0-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "BAMSurgeon": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"BAMSurgeon/1.2-GCC-8.3.0-Python-2.7.16": ["doduo", "donphan", "joltik"]}}, "basemap": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"basemap/1.2.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "BatMeth2": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"BatMeth2/2.1-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "BayeScan": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"BayeScan/2.1-intel-compilers-2021.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "BayeScEnv": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"BayeScEnv/1.1-GCC-8.3.0": ["doduo", "donphan", "joltik"], "BayeScEnv/1.1-iccifort-2019.5.281": ["doduo"]}}, "BerkeleyGW": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"BerkeleyGW/2.1.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "BerkeleyGW/2.1.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "BiG-SCAPE": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"BiG-SCAPE/1.0.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "BinSanity": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"BinSanity/0.3.5-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Bio-EUtilities": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"Bio-EUtilities/1.76-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Bio-SearchIO-hmmer": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Bio-SearchIO-hmmer/1.7.3-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Block": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Block/1.5.3-20200525-foss-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "bmtagger": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"bmtagger/3.101-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Bonito": {"clusters": ["doduo", "joltik", "skitty", "victini"], "versions": {"Bonito/0.1.0-foss-2019b-Python-3.7.4": ["doduo", "skitty", "victini"], "Bonito/0.3.8-fosscuda-2020b": ["joltik"], "Bonito/0.4.0-fosscuda-2020b": ["joltik"]}}, "Bonnie++": {"clusters": ["doduo"], "versions": {"Bonnie++/2.00a-GCC-10.3.0": ["doduo"]}}, "Bottleneck": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Bottleneck/1.3.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "bpp": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"bpp/4.4.0-GCC-10.3.0": ["doduo", "donphan", "joltik", "swalot"]}}, "BSMAPz": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"BSMAPz/1.1.1-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "BSseeker2": {"clusters": ["doduo"], "versions": {"BSseeker2/2.1.8-GCC-8.3.0-Python-2.7.16": ["doduo"], "BSseeker2/2.1.8-iccifort-2019.5.281-Python-2.7.16": ["doduo"]}}, "buildenv": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"buildenv/default-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "buildenv/default-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Calib": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"Calib/0.3.4-GCC-9.3.0": ["doduo", "donphan", "joltik", "swalot"]}}, "carputils": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"carputils/20200915-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "carputils/20210513-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CDAT": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CDAT/8.2.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "cdbfasta": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"cdbfasta/0.99-GCC-8.3.0": ["doduo", "donphan", "joltik"], "cdbfasta/0.99-iccifort-2019.5.281": ["doduo", "donphan", "joltik"]}}, "CellRanger": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CellRanger/6.0.1": ["doduo", "donphan", "joltik", "swalot"], "CellRanger/6.1.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "CellRanger/7.0.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CellRanger/3.1.0": ["donphan", "joltik"], "CellRanger/4.0.0": ["donphan", "joltik"]}}, "CellRank": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CellRank/1.4.0-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Centrifuge": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Centrifuge/1.0.4-beta-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "CFDEMcoupling": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CFDEMcoupling/3.8.0-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "CGmapTools": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"CGmapTools/0.1.2-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "CheMPS2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CheMPS2/1.8.12-foss-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "chewBBACA": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"chewBBACA/2.5.5-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "CIRCexplorer2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CIRCexplorer2/2.3.8-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CIRI-long": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CIRI-long/1.0.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CITE-seq-Count": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"CITE-seq-Count/1.4.3-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "ClustalW2": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ClustalW2/2.1-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "CONCOCT": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CONCOCT/1.1.0-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Coreutils": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"Coreutils/8.32-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "coverage": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"coverage/5.5-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "CPPE": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CPPE/0.3.1-GCC-11.3.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CppUnit": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"CppUnit/1.15.1-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "cpu_features": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"cpu_features/0.6.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CRISPR-DAV": {"clusters": ["doduo", "donphan", "gallade", "joltik", "swalot"], "versions": {"CRISPR-DAV/2.3.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "swalot"]}}, "CRISPResso2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"CRISPResso2/2.1.2-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "CRISPResso2/2.2.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "CRYSTAL17": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"CRYSTAL17/1.0.2-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Cufflinks": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Cufflinks/20190706-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Dalton": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Dalton/2020.0-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "deal.II": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"deal.II/9.3.3-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "decona": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"decona/0.1.2-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Delly": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Delly/0.8.7-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "DFT-D3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DFT-D3/3.2.0-iccifort-2020.4.304": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DFT-D3/3.2.0-intel-compilers-2021.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "DIANA": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"DIANA/10.5": ["doduo", "donphan", "joltik", "swalot"], "DIANA/10.4": ["donphan", "joltik"]}}, "Dice": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Dice/20221025-foss-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "dijitso": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"dijitso/2019.1.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "DIRAC": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"DIRAC/19.0-intel-2020a-Python-2.7.18-int64": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "DIRAC/19.0-intel-2020a-Python-2.7.18-mpi-int64": ["doduo", "donphan", "joltik", "swalot"]}}, "DL_POLY_Classic": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"DL_POLY_Classic/1.10-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "DL_POLY_Classic/1.10-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "dlib": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"dlib/19.22-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "dlib/19.22-foss-2021a-CUDA-11.3.1": ["joltik"]}}, "DMCfun": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"DMCfun/1.3.0-foss-2019b-R-3.6.2": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "DOLFIN": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"DOLFIN/2019.1.0.post0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "swalot"]}}, "DROP": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"DROP/1.0.3-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "DROP/1.1.0-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Dsuite": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Dsuite/20210718-intel-compilers-2021.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "dtcwt": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"dtcwt/0.12.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Elk": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Elk/7.0.12-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "elprep": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"elprep/5.1.1": ["doduo", "donphan", "joltik", "swalot"]}}, "ESMPy": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ESMPy/8.0.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "ESMPy/8.0.1-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "ESMPy/8.0.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "eSpeak-NG": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"eSpeak-NG/1.50-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "EUKulele": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"EUKulele/1.0.4-foss-2020b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Excel-Writer-XLSX": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Excel-Writer-XLSX/1.09-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FabIO": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FabIO/0.11.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FALCON": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"FALCON/1.8.8-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "fastahack": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"fastahack/1.0.0-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "FastME": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FastME/2.1.6.1-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "FastME/2.1.6.1-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "FastME/2.1.6.1-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "FastViromeExplorer": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"FastViromeExplorer/20180422-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "FEniCS": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"FEniCS/2019.1.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "swalot"]}}, "fermi-lite": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"fermi-lite/20190320-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "festival": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"festival/2.5.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "fetchMG": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"fetchMG/1.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "FFC": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"FFC/2019.1.0.post0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "FIAT": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"FIAT/2019.1.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "filevercmp": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"filevercmp/20191210-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Filtlong": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Filtlong/0.2.0-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FLAIR": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"FLAIR/1.5-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik"], "FLAIR/1.5.1-20200630-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik"]}}, "FLTK": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FLTK/1.3.5-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "FLTK/1.3.5-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Flye": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Flye/2.6-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "Flye/2.7-intel-2019b-Python-3.7.4": ["doduo"], "Flye/2.8.1-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Flye/2.8.3-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"], "Flye/2.8.3-iccifort-2020.4.304": ["doduo", "donphan", "joltik", "swalot"], "Flye/2.9-GCC-10.3.0": ["doduo", "donphan", "joltik", "swalot"], "Flye/2.9-intel-compilers-2021.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "FMM3D": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"FMM3D/20211018-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "FMPy": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"FMPy/0.3.2-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "freebayes": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"freebayes/1.3.5-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"]}}, "FreeFEM": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"FreeFEM/4.5-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "freetype-py": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"freetype-py/2.2.0-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "fsom": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"fsom/20141119-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "FuSeq": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"FuSeq/1.1.2-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "FusionCatcher": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"FusionCatcher/1.20-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "FusionCatcher/1.30-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "g2clib": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"g2clib/1.6.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "g2clib/1.6.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "g2lib": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"g2lib/3.1.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "g2log": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"g2log/1.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "garnett": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"garnett/0.1.20-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "gawk": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gawk/5.1.0-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "gcloud": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"gcloud/382.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GDB": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"GDB/9.1-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "gdbm": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"gdbm/1.18.1-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GEGL": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"GEGL/0.4.30-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "gengetopt": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"gengetopt/2.23-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gengetopt/2.23-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "gexiv2": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"gexiv2/0.12.2-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "gflags": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"gflags/2.2.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "GIMP": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"GIMP/2.10.24-GCC-10.3.0": ["doduo", "donphan", "joltik", "swalot"]}}, "glibc": {"clusters": ["doduo", "skitty", "victini"], "versions": {"glibc/2.30-GCCcore-8.3.0": ["doduo", "skitty", "victini"]}}, "GLibmm": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"GLibmm/2.49.7-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "GLibmm/2.66.4-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GlimmerHMM": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GlimmerHMM/3.0.4c-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "GlimmerHMM/3.0.4c-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "GlobalArrays": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"GlobalArrays/5.8-intel-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "glog": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"glog/0.4.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "gmsh": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"gmsh/4.5.6-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "gmsh/4.5.6-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "gobff": {"clusters": ["doduo"], "versions": {"gobff/2020b": ["doduo"]}}, "GPyOpt": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"GPyOpt/1.2.6-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GraphicsMagick": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"GraphicsMagick/1.3.34-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "GraphMap2": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"GraphMap2/0.6.4-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "GroIMP": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"GroIMP/1.5-Java-1.8": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "GTK+": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"GTK+/2.24.33-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "GTK+/3.24.13-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "GTK+/3.24.23-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Hadoop": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Hadoop/2.10.0-GCCcore-8.3.0-native": ["doduo", "donphan", "joltik", "skitty", "victini"], "Hadoop/2.10.0-GCCcore-10.2.0-native": ["doduo", "swalot"], "Hadoop/2.10.0-GCCcore-10.2.0-native-Java-1.8": ["donphan", "joltik"]}}, "HAL": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HAL/2.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "harmony": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"harmony/0.1.0-20210528-foss-2020b-R-4.0.3": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "harmony/1.0.0-20200224-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "HDDM": {"clusters": ["doduo", "skitty", "victini"], "versions": {"HDDM/0.7.5-intel-2019b-Python-2.7.16": ["doduo", "skitty", "victini"], "HDDM/0.7.5-intel-2019b-Python-3.7.4": ["doduo", "skitty", "victini"]}}, "hierfstat": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"hierfstat/0.5-7-foss-2020a-R-4.0.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "HMMER2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"HMMER2/2.3.2-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "HMMER2/2.3.2-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "HMMER2/2.3.2-GCC-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "horton": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"horton/2.1.1-intel-2020a-Python-2.7.18": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "hyperopt": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"hyperopt/0.2.4-intel-2019b-Python-3.7.4-Java-1.8": ["doduo", "donphan", "joltik"], "hyperopt/0.2.5-fosscuda-2020b": ["joltik"]}}, "HyPo": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"HyPo/1.0.3-GCC-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik"]}}, "ichorCNA": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ichorCNA/0.3.2-20191219-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "idemux": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"idemux/0.1.6-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "IGMPlot": {"clusters": ["doduo"], "versions": {"IGMPlot/2.4.2-GCC-8.3.0": ["doduo"], "IGMPlot/2.4.2-iccifort-2019.5.281": ["doduo"]}}, "IGV": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"IGV/2.8.0-Java-11": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "IGV/2.9.4-Java-11": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "iibff": {"clusters": ["doduo"], "versions": {"iibff/2020b": ["doduo"]}}, "intervaltree": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"intervaltree/0.1-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "IOR": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"IOR/3.2.1-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "IRkernel": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"IRkernel/1.1-foss-2019b-R-3.6.2-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "IRkernel/1.2-foss-2021a-R-4.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "isoCirc": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"isoCirc/1.0.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "jobcli": {"clusters": ["doduo", "swalot"], "versions": {"jobcli/0.0": ["doduo", "swalot"]}}, "joypy": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"joypy/0.2.2-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "joypy/0.2.4-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "JSON-GLib": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"JSON-GLib/1.6.2-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Kaleido": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Kaleido/0.1.0-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "kma": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"kma/1.2.22-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Kraken": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Kraken/1.1.1-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Kraken/1.1.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Kraken2": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Kraken2/2.0.9-beta-gompi-2020a-Perl-5.30.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Kraken2/2.1.2-gompi-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "lancet": {"clusters": ["doduo"], "versions": {"lancet/1.1.0-iccifort-2019.5.281": ["doduo"]}}, "LAST": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LAST/1045-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "LAST/1179-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "LASTZ": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"LASTZ/1.04.03-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "lavaan": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"lavaan/0.6-9-foss-2021a-R-4.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "legacy-job-wrappers": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"legacy-job-wrappers/0.0": ["doduo", "donphan", "joltik", "swalot"]}}, "libBigWig": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"libBigWig/0.4.4-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "libcdms": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libcdms/3.1.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libdap": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libdap/3.20.6-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "libdap/3.20.7-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libdrs": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libdrs/3.1.2-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libFLAME": {"clusters": ["doduo"], "versions": {"libFLAME/5.2.0-GCCcore-10.2.0": ["doduo"]}}, "LiBis": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"LiBis/20200428-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "libmatheval": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libmatheval/1.1.11-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "libmatheval/1.1.11-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libmypaint": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libmypaint/1.6.1-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libRmath": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libRmath/4.1.0-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "librsvg": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"librsvg/2.51.2-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libsigc++": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libsigc++/2.10.2-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "libsigc++/2.10.8-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "libxml++": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"libxml++/2.40.1-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "libxml++/2.42.1-GCC-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "LMfit": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"LMfit/1.0.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "LncLOOM": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LncLOOM/2.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "longread_umi": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"longread_umi/0.3.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Longshot": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"Longshot/0.4.1-GCCcore-8.3.0": ["doduo"], "Longshot/0.4.3-GCCcore-10.2.0": ["donphan", "joltik"]}}, "LPeg": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"LPeg/1.0.2-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "LPJmL": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LPJmL/4.0.003-iimpi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "LtrDetector": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"LtrDetector/1.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "LUMPY": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"LUMPY/0.3.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "M1QN3": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"M1QN3/3.3-GCC-10.3.0": ["doduo", "donphan", "joltik", "swalot"]}}, "makedepend": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"makedepend/1.0.6-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "makedepend/1.0.6-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "manta": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"manta/1.6.0-gompi-2020a-Python-2.7.18": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MariaDB-connector-c": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"MariaDB-connector-c/2.3.7-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MariaDB-connector-c/3.1.7-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MARS": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"MARS/20191101-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "MATIO": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"MATIO/1.5.17-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "mauveAligner": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"mauveAligner/4736-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "maze": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"maze/20170124-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MBROLA": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"MBROLA/3.3-GCCcore-9.3.0-voices-20200330": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MCL": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MCL/14.137-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "MCL/14.137-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "MCL/14.137-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "medImgProc": {"clusters": ["doduo", "skitty", "victini"], "versions": {"medImgProc/2.5.7-foss-2019b-Python-3.7.4": ["doduo", "skitty", "victini"]}}, "MEGA": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"MEGA/11.0.10": ["doduo", "donphan", "joltik", "swalot"]}}, "MEM": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"MEM/20191023-foss-2019b": ["doduo", "donphan", "joltik"], "MEM/20191023-foss-2020a-R-4.0.0": ["donphan", "joltik"]}}, "meshalyzer": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"meshalyzer/2.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "meshalyzer/2.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "meshalyzer/20200308-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "meshtool": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"meshtool/16-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "meshtool/16-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Mesquite": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"Mesquite/2.3.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "MESS": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"MESS/0.1.6-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "metaerg": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"metaerg/1.2.3-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Metagenome-Atlas": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Metagenome-Atlas/2.4.3-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "metaWRAP": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"metaWRAP/1.3-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MethylDackel": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"MethylDackel/0.5.0-iccifort-2019.5.281": ["doduo", "donphan", "joltik"]}}, "mhcnuggets": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"mhcnuggets/2.3-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "mhcnuggets/2.3-fosscuda-2020b": ["joltik"]}}, "MicrobeAnnotator": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"MicrobeAnnotator/2.0.5-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "microctools": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"microctools/0.1.0-20201209-foss-2020b-R-4.0.4": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MinCED": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"MinCED/0.4.2-GCCcore-8.3.0-Java-11": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "minibar": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"minibar/20200326-iccifort-2019.5.281-Python-3.7.4": ["doduo", "donphan", "joltik"], "minibar/20200326-iccifort-2020.1.217-Python-3.8.2": ["doduo", "donphan", "joltik"]}}, "misha": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"misha/4.0.10-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MiXCR": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"MiXCR/3.0.13-Java-11": ["doduo", "donphan", "joltik", "swalot"]}}, "mm-common": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"mm-common/1.0.4-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "MOABS": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"MOABS/1.3.9.6-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Molden": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Molden/6.8-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "mongolite": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"mongolite/2.3.0-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "mongolite/2.3.0-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "mongolite/2.3.0-foss-2020b-R-4.0.4": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "monitor": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"monitor/1.1.2": ["doduo", "donphan", "joltik", "swalot"]}}, "Mono": {"clusters": ["doduo", "skitty", "victini"], "versions": {"Mono/6.8.0.105-GCCcore-8.3.0": ["doduo", "skitty", "victini"]}}, "motionSegmentation": {"clusters": ["doduo", "skitty", "victini"], "versions": {"motionSegmentation/2.7.9-foss-2019b-Python-3.7.4": ["doduo", "skitty", "victini"]}}, "MrBayes": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"MrBayes/3.2.6-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "MrBayes/3.2.7-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "multichoose": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"multichoose/1.0.3-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Multiwfn": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"Multiwfn/3.6-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "muParser": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"muParser/2.3.2-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "MyCC": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"MyCC/2017-03-01-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "Myokit": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Myokit/1.32.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "Myokit/1.32.0-fosscuda-2020b": ["joltik"]}}, "NanoComp": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"NanoComp/1.10.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "NanoComp/1.13.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "nanocompore": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"nanocompore/1.0.0rc3-2-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "nanofilt": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"nanofilt/2.6.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "nanofilt/2.6.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "NanoFilt": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"NanoFilt/2.6.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "NanoPlot": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"NanoPlot/1.28.4-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "NanoPlot/1.33.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "nanopolish": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"nanopolish/0.13.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "nanopolish/0.13.3-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "NanopolishComp": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"NanopolishComp/0.6.11-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "NCO": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"NCO/5.0.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "NCO/5.0.6-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ncview": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"ncview/2.1.7-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "NECI": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"NECI/20220711-foss-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "NewHybrids": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"NewHybrids/1.1_Beta3-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"]}}, "NLMpy": {"clusters": ["doduo", "skitty", "victini"], "versions": {"NLMpy/0.1.5-intel-2019b-Python-3.7.4": ["doduo", "skitty", "victini"]}}, "NOVOPlasty": {"clusters": ["doduo", "skitty", "victini"], "versions": {"NOVOPlasty/3.7-GCCcore-8.3.0": ["doduo", "skitty", "victini"]}}, "ntCard": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"ntCard/1.2.1-GCC-8.3.0": ["doduo", "donphan", "joltik"]}}, "OpenAI-Gym": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"OpenAI-Gym/0.17.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "openCARP": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"openCARP/3.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "openCARP/6.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "OpenCoarrays": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"OpenCoarrays/2.8.0-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "OpenFace": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenFace/2.2.0-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenFace/2.2.0-foss-2021a-CUDA-11.3.1": ["joltik"]}}, "OpenFOAM-Extend": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"OpenFOAM-Extend/4.0-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "OpenFOAM-Extend/4.1-20191120-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik"], "OpenFOAM-Extend/4.1-20200408-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "OpenForceField": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenForceField/0.7.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OpenImageIO": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"OpenImageIO/2.0.12-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "OpenImageIO/2.0.12-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "openkim-models": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"openkim-models/20190725-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "openkim-models/20190725-intel-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "OpenMM-PLUMED": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenMM-PLUMED/1.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OpenMMTools": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenMMTools/0.20.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OpenMolcas": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenMolcas/21.06-intel-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OpenPIV": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"OpenPIV/0.21.8-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "OpenSees": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"OpenSees/3.2.0-intel-2020a-Python-3.8.2-parallel": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "OpenSees/3.2.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "OPERA-MS": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"OPERA-MS/0.9.0-20200802-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "orca": {"clusters": ["doduo"], "versions": {"orca/1.3.0-GCCcore-8.3.0": ["doduo"], "orca/1.3.1-GCCcore-10.2.0": ["doduo"]}}, "OrthoFinder": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"OrthoFinder/2.3.8-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "OrthoFinder/2.3.11-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "OrthoFinder/2.5.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "OrthoFinder/2.5.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "p4est": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"p4est/2.8-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "p7zip": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"p7zip/17.03-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "packmol": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"packmol/v20.2.2-iccifort-2020.1.217": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pagmo": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pagmo/2.17.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "panaroo": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"panaroo/1.2.8-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pandas": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pandas/1.1.2-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Pandoc": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Pandoc/2.13": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "ParmEd": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"ParmEd/3.2.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "ParmEd/3.2.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "ParMGridGen": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"ParMGridGen/1.0-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "ParMGridGen/1.0-iimpi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "PartitionFinder": {"clusters": ["doduo", "skitty", "victini"], "versions": {"PartitionFinder/2.1.1-intel-2019b-Python-2.7.16": ["doduo", "skitty", "victini"]}}, "pauvre": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pauvre/0.1923-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "pauvre/0.1924-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "petsc4py": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"petsc4py/3.12.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "petsc4py/3.15.0-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pftoolsV3": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pftoolsV3/3.2.11-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "phonemizer": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"phonemizer/2.2.1-gompi-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "phototonic": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"phototonic/2.1-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pIRS": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"pIRS/2.0.2-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "plotly-orca": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"plotly-orca/1.3.0-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "plotly-orca/1.3.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PLY": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"PLY/3.11-GCCcore-8.3.0-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Porechop": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"Porechop/0.2.4-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "porefoam": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"porefoam/2021-09-21-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "POV-Ray": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"POV-Ray/3.7.0.8-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PRANK": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PRANK/170427-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PRANK/170427-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Primer3": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"Primer3/2.5.0-GCC-9.3.0": ["doduo", "donphan", "joltik", "swalot"]}}, "PRISMS-PF": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"PRISMS-PF/2.2-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "prokka": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"prokka/1.14.5-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "prokka/1.14.5-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyBerny": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyBerny/0.6.2-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PyBerny/0.6.3-foss-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyCheMPS2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyCheMPS2/1.8.12-foss-2022a": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pyfasta": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pyfasta/0.5.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyFoam": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyFoam/2020.5-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyGEOS": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"PyGEOS/0.8-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pygmo": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pygmo/2.16.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pymbar": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pymbar/3.0.3-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pymca": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pymca/5.6.3-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "PyOD": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyOD/0.8.7-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "PyOD/0.8.7-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pyparsing": {"clusters": ["doduo", "skitty", "victini"], "versions": {"pyparsing/2.4.6-GCCcore-8.3.0-Python-2.7.16": ["doduo", "skitty", "victini"]}}, "PyRe": {"clusters": ["doduo", "skitty", "victini"], "versions": {"PyRe/5.0.3-20190221-foss-2019b-Python-3.7.4": ["doduo", "skitty", "victini"], "PyRe/5.0.3-20190221-intel-2019b-Python-3.7.4": ["doduo", "skitty", "victini"]}}, "PyRETIS": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"PyRETIS/2.5.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "victini"], "PyRETIS/2.5.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "victini"], "PyRETIS/2.5.0-intel-2020a-Python-3.8.2": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "pysamstats": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"pysamstats/1.1.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "pySCENIC": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"pySCENIC/0.10.3-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "pySCENIC/0.10.3-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "pysndfx": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"pysndfx/0.3.6-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "PyStan": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"PyStan/2.19.1.1-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "python-Levenshtein": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"python-Levenshtein/0.12.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "python-Levenshtein/0.12.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "python-weka-wrapper3": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"python-weka-wrapper3/0.1.11-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "pythran": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"pythran/0.9.4.post1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "PyTorch-Geometric": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"PyTorch-Geometric/1.3.2-foss-2019b-Python-3.7.4": ["doduo", "skitty", "victini"], "PyTorch-Geometric/1.4.2-foss-2019b-Python-3.7.4-PyTorch-1.4.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "PyTorch-Geometric/1.7.0-foss-2020b-numba-0.53.1": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "PyTorch-Geometric/1.6.3-fosscuda-2020b": ["joltik"], "PyTorch-Geometric/1.7.0-fosscuda-2020b-numba-0.53.1": ["joltik"]}}, "PyVCF": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"PyVCF/0.6.8-GCC-8.3.0": ["doduo"], "PyVCF/0.6.8-GCC-8.3.0-Python-2.7.16": ["donphan", "joltik"]}}, "PyWavelets": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"PyWavelets/1.1.1-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "qcat": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"qcat/1.1.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "qcat/1.1.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "qcat/1.1.0-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Qualimap": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Qualimap/2.2.1-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "R-INLA": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"R-INLA/21.05.02-foss-2020b-R-4.0.4": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Ragout": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Ragout/2.3-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "RagTag": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RagTag/2.0.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "RASPA2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"RASPA2/2.0.41-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "rasterstats": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"rasterstats/0.15.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "RAxML-NG": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"RAxML-NG/0.9.0-gompi-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"], "RAxML-NG/1.0.3-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"], "RAxML-NG/0.9.0-GCC-8.3.0": ["donphan", "joltik"]}}, "Ray": {"clusters": ["doduo"], "versions": {"Ray/0.8.4-foss-2019b-Python-3.7.4": ["doduo"]}}, "rgdal": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"rgdal/1.4-8-foss-2019b-R-3.6.2": ["doduo", "donphan", "joltik", "skitty", "victini"], "rgdal/1.5-16-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "rgdal/1.5-23-foss-2020b-R-4.0.4": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "rgdal/1.5-23-foss-2021a-R-4.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "rgeos": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"rgeos/0.5-2-foss-2019b-R-3.6.2": ["doduo", "donphan", "joltik", "skitty", "victini"], "rgeos/0.5-5-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "rgeos/0.5-5-foss-2021a-R-4.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "rickflow": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"rickflow/0.7.0-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "rickflow/0.7.0-20200529-intel-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "rmarkdown": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"rmarkdown/2.20-foss-2021a-R-4.1.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Rmath": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Rmath/4.0.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "rMATS-turbo": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"rMATS-turbo/4.1.1-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "RNA-Bloom": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"RNA-Bloom/1.2.3-GCC-8.3.0": ["doduo", "donphan", "joltik"]}}, "RnBeads": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"RnBeads/2.6.0-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Roary": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Roary/3.13.0-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "rstanarm": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"rstanarm/2.19.3-foss-2019b-R-3.6.2": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "rstudio": {"clusters": ["doduo"], "versions": {"rstudio/1.3.959-foss-2020a-Java-11-R-4.0.0": ["doduo"]}}, "Sailfish": {"clusters": ["doduo", "skitty", "victini"], "versions": {"Sailfish/0.10.1-gompi-2019b": ["doduo", "skitty", "victini"]}}, "Sambamba": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Sambamba/0.8.0-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "samblaster": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"samblaster/0.1.26-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "sansa": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"sansa/0.0.7-gompi-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SCENIC": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SCENIC/1.2.4-foss-2021a-R-4.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "scGeneFit": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"scGeneFit/1.0.2-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "scipy": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"scipy/1.4.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "scVelo": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"scVelo/0.1.24-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "scVelo/0.2.3-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SDSL": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"SDSL/2.1.1-20191211-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "SECAPR": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"SECAPR/1.1.15-foss-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "segemehl": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"segemehl/0.3.4-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "segmentation-models": {"clusters": ["doduo", "skitty", "victini"], "versions": {"segmentation-models/1.0.1-foss-2019b-Python-3.7.4": ["doduo", "skitty", "victini"]}}, "SeqKit": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SeqKit/2.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SeqLib": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"SeqLib/1.2.0-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"]}}, "SeuratData": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SeuratData/20210514-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SeuratWrappers": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SeuratWrappers/20210528-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "sf": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"sf/0.9-5-foss-2020a-R-4.0.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Shasta": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Shasta/0.8.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Sibelia": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Sibelia/3.0.7-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "silx": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"silx/0.14.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SimNIBS": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SimNIBS/3.2.4-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SimpleElastix": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"SimpleElastix/1.1.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "SiNVICT": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SiNVICT/1.0-20180817-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SLATEC": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"SLATEC/4.1-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "slepc4py": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"slepc4py/3.12.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "slepc4py/3.15.1-foss-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SLiM": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"SLiM/3.4-GCC-9.3.0": ["doduo", "donphan", "joltik", "swalot"]}}, "smithwaterman": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"smithwaterman/20160702-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SMV": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SMV/6.7.17-iccifort-2020.4.304": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "snippy": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"snippy/4.6.0-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"]}}, "snp-sites": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"snp-sites/2.5.1-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "snpEff": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"snpEff/5.0e-GCCcore-10.2.0-Java-13": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "sonic": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"sonic/20180202-gompi-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "sparsehash": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"sparsehash/2.0.3-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "spatialreg": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"spatialreg/1.1-5-foss-2019b-R-3.6.2": ["doduo", "donphan", "joltik", "skitty", "victini"], "spatialreg/1.1-8-foss-2021a-R-4.1.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "speech_tools": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"speech_tools/2.5.0-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Spyder": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Spyder/4.1.5-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "SRPRISM": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SRPRISM/3.1.2-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SRST2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"SRST2/0.2.0-20210620-foss-2020b-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "SSPACE_Basic": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"SSPACE_Basic/2.1.1-GCC-10.2.0-Python-2.7.18": ["doduo", "donphan", "joltik", "swalot"]}}, "SSW": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SSW/1.1-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "STACEY": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"STACEY/1.2.5-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"]}}, "Stacks": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Stacks/2.5-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "Stacks/2.53-iccifort-2019.5.281": ["doduo", "donphan", "joltik"]}}, "stars": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Stata": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Stata/15": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Statistics-R": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Statistics-R/0.34-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "STREAM": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"STREAM/5.10-GCC-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "StringTie": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"StringTie/2.1.1-GCC-8.3.0": ["doduo", "donphan", "joltik"]}}, "Structure": {"clusters": ["doduo"], "versions": {"Structure/2.3.4-iccifort-2019.5.281": ["doduo"]}}, "suave": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"suave/20160529-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Subread": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Subread/2.0.0-GCC-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "Subread/2.0.3-GCC-9.3.0": ["doduo", "donphan", "joltik", "swalot"]}}, "SuperLU": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"SuperLU/5.2.2-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "swissknife": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"swissknife/1.80-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "tabixpp": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"tabixpp/1.1.0-GCC-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "TALON": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"TALON/5.0-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "taxator-tk": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"taxator-tk/1.3.3-GCC-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "taxator-tk/1.3.3-gompi-2020b": ["doduo", "swalot"]}}, "tbl2asn": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"tbl2asn/20220427-linux64": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "tbl2asn/25.8-linux64": ["skitty", "victini"]}}, "TCLAP": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"TCLAP/1.2.4-GCCcore-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "TEtranscripts": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"TEtranscripts/2.2.0-foss-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "texinfo": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"texinfo/6.7-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "texinfo/6.7-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "texlive": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"texlive/20210324-GCC-11.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "time": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"time/1.9-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "time/1.9-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "tMAE": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"tMAE/1.0.0-foss-2020b-R-4.0.3": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "tmux": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"tmux/3.2a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Tombo": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"Tombo/1.5.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "TranscriptClean": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"TranscriptClean/2.0.2-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "TransDecoder": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"TransDecoder/5.5.0-GCC-10.2.0": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "treatSens": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"treatSens/3.0-20201002-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Trilinos": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Trilinos/12.12.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Trim_Galore": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"], "Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"], "Trim_Galore/0.6.6-GCC-10.2.0-Python-2.7.18": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Trycycler": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Trycycler/0.3.3-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "tsne": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"tsne/0.1.8-intel-2019b-Python-2.7.16": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "UCLUST": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"UCLUST/1.2.22q-i86linux64": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "UFL": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"UFL/2019.1.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "UMI-tools": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"UMI-tools/1.0.1-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "umi4cPackage": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"umi4cPackage/20200116-foss-2020a-R-4.0.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Unicycler": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Unicycler/0.4.8-gompi-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "unimap": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"unimap/0.1-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "Vala": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"Vala/0.52.4-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "vbz_compression": {"clusters": ["doduo", "swalot"], "versions": {"vbz_compression/1.0.1-gompi-2020b": ["doduo", "swalot"]}}, "vcflib": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"vcflib/1.0.2-GCC-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "VCFtools": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"VCFtools/0.1.16-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"], "VCFtools/0.1.16-iccifort-2019.5.281": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "VMD": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"VMD/1.9.4a51-foss-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "VMTK": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"VMTK/1.4.0-foss-2019b-Python-3.7.4": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "vt": {"clusters": ["doduo", "donphan", "joltik", "swalot"], "versions": {"vt/0.57721-GCC-10.2.0": ["doduo", "donphan", "joltik", "swalot"]}}, "waves2Foam": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"waves2Foam/20200703-foss-2019b": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "wgsim": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"wgsim/20111017-GCC-10.2.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "WHAM": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"WHAM/2.0.10.2-intel-2020a-kj_mol": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "WHAM/2.0.10.2-intel-2020a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "WIEN2k": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"WIEN2k/19.2-intel-2020b": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "WIEN2k/21.1-intel-2021a": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Winnowmap": {"clusters": ["doduo", "skitty", "victini"], "versions": {"Winnowmap/1.0-GCC-8.3.0": ["doduo", "skitty", "victini"]}}, "WisecondorX": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"WisecondorX/1.1.6-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "WPS": {"clusters": ["doduo", "donphan", "joltik", "skitty", "victini"], "versions": {"WPS/4.1-intel-2019b-dmpar": ["doduo", "donphan", "joltik", "skitty", "victini"]}}, "WRF": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"WRF/3.8.0-intel-2019b-dmpar": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "WRF/3.9.1.1-intel-2020b-dmpar": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "WRF/4.1.3-intel-2019b-dmpar": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "xESMF": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"xESMF/0.3.0-foss-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "xESMF/0.3.0-intel-2020b": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "xprop": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"], "versions": {"xprop/1.2.4-GCCcore-9.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "xprop/1.2.5-GCCcore-10.2.0": ["doduo", "donphan", "gallade", "joltik", "skitty", "swalot", "victini"]}}, "xproto": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"xproto/7.0.31-GCCcore-8.3.0": ["doduo", "donphan", "joltik", "skitty", "victini"], "xproto/7.0.31-GCCcore-10.3.0": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "YANK": {"clusters": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"YANK/0.25.2-intel-2020a-Python-3.8.2": ["doduo", "donphan", "joltik", "skitty", "swalot", "victini"]}}, "Boost.Python-NumPy": {"clusters": ["donphan", "joltik"], "versions": {"Boost.Python-NumPy/1.79.0-foss-2022a": ["donphan", "joltik"]}}, "FIGARO": {"clusters": ["donphan", "joltik", "skitty", "swalot", "victini"], "versions": {"FIGARO/1.1.2-intel-2020b": ["donphan", "joltik", "skitty", "swalot", "victini"]}}, "goalign": {"clusters": ["donphan", "joltik"], "versions": {"goalign/0.3.2": ["donphan", "joltik"]}}, "gotree": {"clusters": ["donphan", "joltik"], "versions": {"gotree/0.4.0": ["donphan", "joltik"]}}, "GraphMap": {"clusters": ["donphan", "joltik", "skitty", "victini"], "versions": {"GraphMap/0.5.2-foss-2019b": ["donphan", "joltik", "skitty", "victini"]}}, "jupyter-server": {"clusters": ["donphan", "joltik"], "versions": {"jupyter-server/1.21.0-GCCcore-11.3.0": ["donphan", "joltik"]}}, "librosa": {"clusters": ["donphan", "joltik", "skitty", "victini"], "versions": {"librosa/0.7.2-foss-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"]}}, "likwid": {"clusters": ["donphan", "joltik"], "versions": {"likwid/5.0.1-GCCcore-8.3.0": ["donphan", "joltik"]}}, "NCL": {"clusters": ["donphan", "joltik", "skitty", "victini"], "versions": {"NCL/6.6.2-intel-2019b": ["donphan", "joltik", "skitty", "victini"]}}, "Pychopper": {"clusters": ["donphan", "joltik", "skitty", "victini"], "versions": {"Pychopper/2.3.1-intel-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"]}}, "sbt": {"clusters": ["donphan", "joltik"], "versions": {"sbt/1.3.13-Java-1.8": ["donphan", "joltik"]}}, "UQTk": {"clusters": ["donphan", "joltik", "skitty", "victini"], "versions": {"UQTk/3.1.0-intel-2019b-Python-3.7.4": ["donphan", "joltik", "skitty", "victini"]}}, "VBZ-Compression": {"clusters": ["donphan", "gallade", "joltik", "skitty", "victini"], "versions": {"VBZ-Compression/1.0.1-gompi-2020b": ["donphan", "gallade", "joltik", "skitty", "victini"]}}, "KaHIP": {"clusters": ["gallade"], "versions": {"KaHIP/3.14-gompi-2022a": ["gallade"]}}, "apex": {"clusters": ["joltik"], "versions": {"apex/20210420-fosscuda-2020b": ["joltik"]}}, "cell2location": {"clusters": ["joltik"], "versions": {"cell2location/0.05-alpha-fosscuda-2020b": ["joltik"]}}, "CuPy": {"clusters": ["joltik"], "versions": {"CuPy/8.5.0-fosscuda-2020b": ["joltik"]}}, "cuTENSOR": {"clusters": ["joltik"], "versions": {"cuTENSOR/1.2.2.5-CUDA-11.1.1": ["joltik"]}}, "GenomeWorks": {"clusters": ["joltik"], "versions": {"GenomeWorks/2021.02.2-fosscuda-2020b": ["joltik"]}}, "gpustat": {"clusters": ["joltik"], "versions": {"gpustat/0.6.0-gcccuda-2020b": ["joltik"]}}, "iccifortcuda": {"clusters": ["joltik"], "versions": {"iccifortcuda/2019b": ["joltik"], "iccifortcuda/2020a": ["joltik"], "iccifortcuda/2020b": ["joltik"]}}, "iimpic": {"clusters": ["joltik"], "versions": {"iimpic/2019b": ["joltik"], "iimpic/2020a": ["joltik"], "iimpic/2020b": ["joltik"]}}, "intelcuda": {"clusters": ["joltik"], "versions": {"intelcuda/2019b": ["joltik"], "intelcuda/2020a": ["joltik"], "intelcuda/2020b": ["joltik"]}}, "pyro-api": {"clusters": ["joltik"], "versions": {"pyro-api/0.1.2-fosscuda-2020b": ["joltik"]}}, "pyro-ppl": {"clusters": ["joltik"], "versions": {"pyro-ppl/1.5.2-fosscuda-2020b": ["joltik"]}}, "request": {"clusters": ["joltik"], "versions": {"request/2.88.1-fosscuda-2020b-nodejs-12.19.0": ["joltik"]}}, "supernova": {"clusters": ["skitty", "victini"], "versions": {"supernova/2.0.1": ["skitty", "victini"]}}, "VTune": {"clusters": ["skitty", "victini"], "versions": {"VTune/2019_update2": ["skitty", "victini"]}}}, "time_generated": "Fri, 01 Sep 2023 at 08:52:14 CEST"} \ No newline at end of file +{"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "software": {"ABAQUS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ABAQUS/2023": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ABAQUS/2021-hotfix-2132": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ABAQUS/2022-hotfix-2214": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ABAQUS/2022": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA.", "homepage": "https://www.simulia.com/products/abaqus_fea.html"}, "Abseil": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Abseil/20230125.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Abseil/20230125.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Abseil is an open-source collection of C++ library code designed to augment theC++ standard library. The Abseil library code is collected from Google's ownC++ code base, has been extensively tested and used in production, and is thesame code we depend on in our daily coding lives.", "homepage": "https://abseil.io/"}, "ABySS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ABySS/2.3.7-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ABySS/2.1.5-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler", "homepage": "https://www.bcgsc.ca/platform/bioinfo/software/abyss"}, "AdapterRemoval": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"AdapterRemoval/2.3.3-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "AdapterRemoval searches for and removes remnant adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal.", "homepage": "https://github.com/MikkelSchubert/adapterremoval"}, "adjustText": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"adjustText/0.7.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.", "homepage": "https://github.com/Phlya/adjustText"}, "AICSImageIO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"AICSImageIO/4.14.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "%(namelower)s-4.14.0, elementpath-4.1.5, fsspec-2023.6.0, ome-zarr-0.8.3, ome_types-0.4.3, pydantic_compat-0.1.2, resource_backed_dask_array-0.1.0, xmlschema-2.5.0, xsdata-23.8"}}, "description": "Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python", "homepage": "https://github.com/AllenCellModeling/aicsimageio"}, "aiohttp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"aiohttp/3.8.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "aiohttp-3.8.1, aiohttp-jinja2-1.5, aioredis-2.0.1, aiosignal-1.2.0, aiosignal-1.2.0, async-timeout-4.0.2, frozenlist-1.2.0, hiredis-2.0.0, multidict-5.2.0, yarl-1.7.2"}, "aiohttp/3.8.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "aiohttp-3.8.3, aiohttp-jinja2-1.5, aiohttp-session-2.12.0, aioredis-2.0.1, aiosignal-1.3.1, aiosignal-1.3.1, async-timeout-4.0.2, frozenlist-1.3.3, hiredis-2.0.0, multidict-6.0.2, yarl-1.8.1"}, "aiohttp/3.8.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "aiohttp-3.8.5, aioredis-2.0.1, aiosignal-1.3.1, async-timeout-4.0.2, frozenlist-1.4.0, multidict-6.0.4, yarl-1.9.2"}, "aiohttp/3.8.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"], "extensions": "aiohttp-3.8.5, aiosignal-1.3.1, async-timeout-4.0.2, frozenlist-1.4.0, multidict-6.0.4, yarl-1.9.2"}}, "description": "Asynchronous HTTP client/server framework for asyncio and Python.", "homepage": "https://github.com/aio-libs/aiohttp"}, "Albumentations": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Albumentations/1.1.0-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "albumentations-1.1.0, qudida-0.0.4"}, "Albumentations/1.1.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "albumentations-1.1.0, qudida-0.0.4"}}, "description": "Albumentations is a Python library for fast and flexible image augmentations", "homepage": "https://albumentations.ai"}, "alleleCount": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"alleleCount/4.2.1-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Const::Fast-0.014, Devel::Cover-1.40, Devel::Symdump-2.18, Pod::Coverage-0.23, Pod::Parser-1.66"}, "alleleCount/4.3.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Const::Fast-0.014, Devel::Cover-1.40, Devel::Symdump-2.18, Pod::Coverage-0.23, Pod::Parser-1.66"}}, "description": "The alleleCount package primarily exists to prevent code duplicationbetween some other projects, specifically AscatNGS and Battenberg. As of v4 the perl code wraps the C implementation of allele counting code for BAM/CRAM processing.", "homepage": "http://cancerit.github.io/alleleCount/"}, "alleleIntegrator": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"alleleIntegrator/0.8.8-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alleleIntegrator-0.8.8, grr-0.9.5, Matrix.utils-0.9.8"}, "alleleIntegrator/0.8.8-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alleleIntegrator-0.8.8, grr-0.9.5, Matrix.utils-0.9.8"}}, "description": "R package to generate allele specific counts for scRNA data and use it to identify cancer cells", "homepage": "https://github.com/constantAmateur/alleleIntegrator"}, "AlphaFold": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"AlphaFold/2.0.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1"}, "AlphaFold/2.1.1-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1"}, "AlphaFold/2.1.2-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1"}, "AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "chex-0.1.3, contextlib2-21.6.0, dm-haiku-0.0.6, dm-tree-0.1.7, docker-5.0.3, immutabledict-2.2.1, jmp-0.0.2, ml_collections-0.1.1, PDBFixer-1.7, tabulate-0.8.10, toolz-0.11.2, websocket-client-1.3.3"}, "AlphaFold/2.3.0-foss-2021b-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"], "extensions": "chex-0.1.5, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.7, docker-5.0.3, immutabledict-2.2.1, jmp-0.0.2, ml_collections-0.1.1, PDBFixer-1.7, tabulate-0.8.10, toolz-0.11.2, websocket-client-1.3.3"}, "AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1"}, "AlphaFold/2.3.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1"}, "AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold": {"clusters": ["accelgor", "joltik"], "extensions": "chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1"}, "AlphaFold/2.0.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1"}, "AlphaFold/2.1.2-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1"}, "AlphaFold/2.2.2-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "chex-0.1.3, contextlib2-21.6.0, dm-haiku-0.0.6, dm-tree-0.1.7, docker-5.0.3, immutabledict-2.2.1, jmp-0.0.2, ml_collections-0.1.1, PDBFixer-1.7, tabulate-0.8.10, toolz-0.11.2, websocket-client-1.3.3"}, "AlphaFold/2.3.4-foss-2022a-ColabFold": {"clusters": ["donphan", "joltik"], "extensions": "chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1"}}, "description": "AlphaFold can predict protein structures with atomic accuracy even where nosimilar structure is known.This package of AlphaFold contains patches for ColabFold.", "homepage": "https://github.com/sokrypton/alphafold"}, "AlphaPulldown": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"AlphaPulldown/0.30.4-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "AlphaPulldown-0.30.4, contextlib2-21.6.0, dm-haiku-0.0.4, importlib-resources-5.12.0, ml-collections-0.1.1, PDBFixer-1.7, py3Dmol-2.0.1.post1, toolz-0.11.1"}, "AlphaPulldown/0.30.4-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "AlphaPulldown-0.30.4, contextlib2-21.6.0, dm-haiku-0.0.4, importlib-resources-5.12.0, ml-collections-0.1.1, PDBFixer-1.7, py3Dmol-2.0.1.post1, toolz-0.11.1"}, "AlphaPulldown/0.30.7-foss-2022a": {"clusters": ["donphan", "joltik"], "extensions": "AlphaPulldown-0.30.7, importlib-resources-5.13.0"}}, "description": "AlphaPulldown is a Python package that streamlines protein-proteininteraction screens and high-throughput modelling of higher-order oligomers using AlphaFold-Multimer", "homepage": "https://github.com/KosinskiLab/AlphaPulldown"}, "alsa-lib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"alsa-lib/1.2.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system.", "homepage": "https://www.alsa-project.org"}, "AMAPVox": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"AMAPVox/1.9.4-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "LiDAR data voxelisation software", "homepage": "https://amap-dev.cirad.fr/projects/amapvox"}, "Amber": {"clusters": ["accelgor", "joltik"], "versions": {"Amber/22.4-foss-2022a-AmberTools-22.5-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"]}}, "description": "Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction.", "homepage": "https://ambermd.org/amber.html"}, "AMICA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"AMICA/2024.1.19-intel-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Code for AMICA: Adaptive Mixture ICA with shared components", "homepage": "https://github.com/sccn/amica"}, "AMOS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"AMOS/3.1.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "AMOS/3.1.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The AMOS consortium is committed to the development of open-source whole genome assembly software", "homepage": "http://amos.sourceforge.net"}, "AMPtk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"AMPtk/1.5.4-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "amptk-1.5.4, distro-1.7.0, natsort-8.1.0, pyfastx-0.8.4"}}, "description": "AMPtk is a series of scripts to process NGS amplicon data using USEARCH and VSEARCH, it can also beused to process any NGS amplicon data and includes databases setup for analysis of fungal ITS, fungal LSU, bacterial16S, and insect COI amplicons.", "homepage": "https://amptk.readthedocs.io"}, "Anaconda3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Anaconda3/2023.03-1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Anaconda3/2020.02": {"clusters": ["doduo", "donphan", "joltik"]}, "Anaconda3/2020.07": {"clusters": ["doduo"]}, "Anaconda3/2020.11": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Built to complement the rich, open source Python community,the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture.", "homepage": "https://www.anaconda.com"}, "anadama2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"anadama2/0.10.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anadama2-0.10.0, cloudpickle-2.2.1, Markdown-3.4.1, Pweave-0.30.3"}}, "description": "AnADAMA2 is the next generation of AnADAMA(Another Automated Data Analysis Management Application). AnADAMA is a tool tocreate reproducible workflows and execute them efficiently.", "homepage": "http://huttenhower.sph.harvard.edu/anadama2"}, "angsd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"angsd/0.940-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Program for analysing NGS data.", "homepage": "http://www.popgen.dk/angsd"}, "anndata": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"anndata/0.8.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.8.0, natsort-8.3.1"}, "anndata/0.9.2-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.9.2, natsort-8.4.0, setuptools-68.1.2"}, "anndata/0.10.5.post1-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.10.5.post1, array_api_compat-1.4.1, natsort-8.4.0, packaging-23.2"}}, "description": "anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray", "homepage": "https://github.com/scverse/anndata"}, "Annocript": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Annocript/2.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CGI-4.43"}}, "description": "Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes blast analysis with UniProt, NCBI Conserved Domain Database and Nucleotide division adding also annotations from Gene Ontology, the Enzyme Commission and UniPathways. Annocript also gives information about the longest ORF and the non-coding potential using external software. Annocript is also capable to identify putative long non-coding RNAs by using an heuristic based on homology and sequence features.", "homepage": "https://github.com/frankMusacchia/Annocript"}, "ant": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ant/1.10.9-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ant/1.10.11-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ant/1.10.12-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ant/1.10.12-Java-17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ant/1.10.6-Java-1.8": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ant/1.10.7-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ant/1.10.8-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.", "homepage": "https://ant.apache.org/"}, "anvio": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"anvio/8-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anvio-8, asgiref-3.7.2, bottle-0.12.25, colored-2.2.4, Django-5.0.1, illumina-utils-2.13, mistune-3.0.2, multiprocess-0.70.15, Paste-3.7.1, plotext-5.2.8, pyani-0.2.12, rich_argparse-1.4.0, sqlparse-0.4.4"}, "anvio/6.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "anvio-6.1, appdirs-1.4.3, bottle-0.12.17, cheroot-8.2.1, CherryPy-18.4.0, colored-1.4.0, ConfigArgParse-0.15.1, datrie-0.8, Django-2.2.7, ete3-3.1.1, gitdb2-2.0.6, GitPython-3.0.5, illumina-utils-2.6, importlib_metadata-0.23, jaraco.functools-2.0, jsonschema-3.2.0, mistune-0.8.4, more-itertools-7.2.0, patsy-0.5.1, portend-2.6, pyani-0.2.9, pyrsistent-0.15.6, python-Levenshtein-0.12.0, PyYAML-5.1.2, ratelimiter-1.2.0.post0, seaborn-0.9.0, smmap2-2.0.5, snakemake-5.8.1, sqlparse-0.3.0, statsmodels-0.10.1, tempora-1.14.1, wrapt-1.11.2, zc.lockfile-2.0, zipp-0.6.0"}}, "description": "An analysis and visualization platform for 'omics data.", "homepage": "https://merenlab.org/software/anvio/"}, "APR-util": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"APR-util/1.6.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Apache Portable Runtime (APR) util libraries.", "homepage": "https://apr.apache.org/"}, "APR": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"APR/1.7.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Apache Portable Runtime (APR) libraries.", "homepage": "https://apr.apache.org/"}, "ARAGORN": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"ARAGORN/1.2.41-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ARAGORN/1.2.38-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "a program to detect tRNA genes and tmRNA genes in nucleotide sequences", "homepage": "http://mbio-serv2.mbioekol.lu.se/ARAGORN/"}, "Archive-Zip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Archive-Zip/1.68-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Archive-Zip/1.68-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Archive-Zip/1.68-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Provide an interface to ZIP archive files.", "homepage": "https://metacpan.org/pod/Archive::Zip"}, "ArchR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ArchR/1.0.1-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ArchR/1.0.2-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "ArchR is a full-featured R package for processing and analyzing single-cell ATAC-seq data.", "homepage": "https://www.archrproject.com"}, "archspec": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"archspec/0.1.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "archspec/0.1.0-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "archspec-0.1.0, six-1.15.0"}, "archspec/0.1.0-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "archspec/0.1.2-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A library for detecting, labeling, and reasoning about microarchitectures", "homepage": "https://github.com/archspec/archspec"}, "argtable": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"argtable/2.13-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss.", "homepage": "http://argtable.sourceforge.net/"}, "Armadillo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Armadillo/11.4.3-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Armadillo/12.6.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.", "homepage": "https://arma.sourceforge.net/"}, "arpack-ng": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"arpack-ng/3.8.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "arpack-ng/3.8.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "arpack-ng/3.8.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "arpack-ng/3.8.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "arpack-ng/3.9.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "arpack-ng/3.7.0-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "arpack-ng/3.7.0-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.", "homepage": "https://github.com/opencollab/arpack-ng"}, "arrow-R": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"arrow-R/6.0.0.2-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "arrow-R/6.0.0.2-foss-2021b-R-4.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "arrow-R/8.0.0-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "arrow-R/11.0.0.3-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "arrow-R/14.0.0.2-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "arrow-R/6.0.0.2-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "R interface to the Apache Arrow C++ library", "homepage": "https://cran.r-project.org/web/packages/arrow"}, "Arrow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Arrow/6.0.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Arrow/8.0.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Arrow/11.0.0-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Arrow/14.0.1-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Arrow/0.16.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}, "Arrow/0.17.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Arrow/0.17.1-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Arrow/0.17.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Arrow/6.0.0-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Arrow/0.17.1-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.", "homepage": "https://arrow.apache.org"}, "ArviZ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ArviZ/0.11.4-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ArviZ/0.12.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ArviZ-0.12.1, xarray-einstats-0.5.0"}, "ArviZ/0.16.1-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ArviZ-0.16.1, xarray-einstats-0.6.0"}, "ArviZ/0.7.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ArviZ/0.7.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ArviZ/0.11.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Exploratory analysis of Bayesian models with Python", "homepage": "https://github.com/arviz-devs/arviz"}, "ASCAT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ASCAT/3.1.2-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ASCAT/3.1.2-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "ASCAT is a method to derive copy number profiles of tumor cells, accounting for normal cell admixture and tumor aneuploidy.", "homepage": "https://github.com/VanLoo-lab/ascat"}, "ASE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ASE/3.20.1-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ase-3.20.1, click-7.1.2, Flask-1.1.2, itsdangerous-1.1.0, Jinja2-2.11.2, MarkupSafe-1.1.1, Werkzeug-1.0.1"}, "ASE/3.22.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.6.1"}, "ASE/3.22.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.8.2"}, "ASE/3.22.1-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.6.1"}, "ASE/3.22.1-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.6.1"}, "ASE/3.22.1-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.8.2"}, "ASE/3.19.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "ase-3.19.0, Click-7.0, Flask-1.1.1, itsdangerous-1.1.0, Jinja2-2.10.3, MarkupSafe-1.1.1, Werkzeug-0.16.0"}, "ASE/3.19.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "ase-3.19.0, Click-7.0, Flask-1.1.1, itsdangerous-1.1.0, Jinja2-2.10.3, MarkupSafe-1.1.1, Werkzeug-0.16.0"}, "ASE/3.20.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ase-3.20.1, ase-ext-20.9.0"}, "ASE/3.21.1-foss-2020b": {"clusters": ["donphan", "gallade", "joltik"], "extensions": "ase-3.21.1, ase-ext-20.9.0"}, "ASE/3.20.1-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "ase-3.20.1, ase-ext-20.9.0"}, "ASE/3.21.1-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "ase-3.21.1, ase-ext-20.9.0"}}, "description": "ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language.From version 3.20.1 we also include the ase-ext package, it contains optional reimplementationsin C of functions in ASE. ASE uses it automatically when installed.", "homepage": "https://wiki.fysik.dtu.dk/ase"}, "at-spi2-atk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"at-spi2-atk/2.38.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "at-spi2-atk/2.38.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "at-spi2-atk/2.38.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "at-spi2-atk/2.38.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "at-spi2-atk/2.38.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "at-spi2-atk/2.38.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "at-spi2-atk/2.34.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "AT-SPI 2 toolkit bridge", "homepage": "https://wiki.gnome.org/Accessibility"}, "at-spi2-core": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"at-spi2-core/2.38.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "at-spi2-core/2.40.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "at-spi2-core/2.40.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "at-spi2-core/2.44.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "at-spi2-core/2.46.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "at-spi2-core/2.49.90-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "at-spi2-core/2.34.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Assistive Technology Service Provider Interface.", "homepage": "https://wiki.gnome.org/Accessibility"}, "ATK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ATK/2.36.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ATK/2.36.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ATK/2.36.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ATK/2.38.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ATK/2.38.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ATK/2.38.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ATK/2.34.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.", "homepage": "https://developer.gnome.org/atk/"}, "atools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"atools/1.5.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "atools/1.4.6-GCCcore-8.3.0-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Tools to make using job arrays a lot more convenient.", "homepage": "https://github.com/gjbex/atools"}, "attr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"attr/2.5.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "attr/2.5.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Commands for Manipulating Filesystem Extended Attributes", "homepage": "https://savannah.nongnu.org/projects/attr"}, "attrdict3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"attrdict3/2.0.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "attrdict3-2.0.2"}}, "description": "AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes.", "homepage": "https://github.com/pirofti/AttrDict3"}, "AUGUSTUS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"AUGUSTUS/3.4.0-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "AUGUSTUS/3.4.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "AUGUSTUS/3.3.3-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "AUGUSTUS/3.3.3-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences", "homepage": "http://bioinf.uni-greifswald.de/augustus/"}, "Autoconf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Autoconf/2.69-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autoconf/2.69-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autoconf/2.69-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autoconf/2.71-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autoconf/2.71-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autoconf/2.71-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autoconf/2.71-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autoconf/2.71-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autoconf/2.71-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autoconf/2.71": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autoconf/2.69-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.", "homepage": "https://www.gnu.org/software/autoconf/"}, "AutoDock-Vina": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"AutoDock-Vina/1.2.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "vina-1.2.3"}}, "description": "AutoDock Vina is an open-source program for doing molecular docking.", "homepage": "https://vina.scripps.edu/"}, "Automake": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Automake/1.16.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Automake/1.16.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Automake/1.16.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Automake/1.16.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Automake/1.16.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Automake/1.16.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Automake/1.16.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Automake/1.16.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Automake/1.16.5-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Automake/1.16.5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Automake/1.15.1-GCCcore-8.3.0": {"clusters": ["doduo", "skitty"]}, "Automake/1.16.1-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Automake: GNU Standards-compliant Makefile generator", "homepage": "https://www.gnu.org/software/automake/automake.html"}, "autopep8": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"autopep8/2.0.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A tool that automatically formats Python code to conform to the PEP 8 style guide.", "homepage": "https://github.com/hhatto/autopep8"}, "Autotools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Autotools/20180311-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autotools/20180311-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autotools/20200321-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autotools/20210128-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autotools/20210726-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autotools/20220317-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autotools/20220317-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autotools/20220317-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autotools/20220317-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autotools/20220317": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Autotools/20180311-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "This bundle collect the standard GNU build tools: Autoconf, Automake and libtool", "homepage": "http://autotools.io"}, "Avogadro2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Avogadro2/1.97.0-linux-x86_64": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.", "homepage": "https://two.avogadro.cc/index.html"}, "awscli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"awscli/2.11.21-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "awscli-2.11.21, awscrt-0.16.16, botocore-1.29.138, distro-1.8.0, jmespath-1.0.1, prompt-toolkit-3.0.38, s3transfer-0.6.1"}}, "description": "Universal Command Line Environment for AWS", "homepage": "https://pypi.python.org/pypi/awscli"}, "Bambi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Bambi/0.7.1-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "bambi-0.7.1, formulae-0.2.0"}}, "description": "Bambi is a high-level Bayesian model-building interface written in Python.It works with the probabilistic programming frameworks PyMC3 and is designedto make it extremely easy to fit Bayesian mixed-effects models common in biology,social sciences and other disciplines.", "homepage": "https://bambinos.github.io/bambi"}, "bamFilters": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"bamFilters/2022-06-30-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "A utility tool to filter alignments from bam files, using identity percent, low complexity and read coverage.", "homepage": "https://github.com/institut-de-genomique/bamFilters"}, "BamTools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BamTools/2.5.1-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BamTools/2.5.2-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BamTools/2.5.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BamTools/2.5.2-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BamTools/2.5.2-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BamTools/2.5.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BamTools/2.5.1-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BamTools/2.5.1-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.", "homepage": "https://github.com/pezmaster31/bamtools"}, "Bandage": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Bandage/0.9.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Bandage/0.8.1_Centos": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Bandage is a program for visualising de novo assembly graphs", "homepage": "http://rrwick.github.io/Bandage/"}, "barrnap": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"barrnap/0.9-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "barrnap/0.9-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes.", "homepage": "https://github.com/tseemann/barrnap"}, "basemap": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"basemap/1.3.9-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "basemap-1.3.9, basemap_data-1.3.9, pyshp-2.3.1"}, "basemap/1.2.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "basemap-1.2.2, pyshp-2.1.3"}}, "description": "The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python", "homepage": "http://matplotlib.org/basemap/"}, "BayesAss3-SNPs": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"BayesAss3-SNPs/1.1-2022.02.19-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Modification of BayesAss 3.0.4 to allow handling of large SNP datasets generated via methods such asRADseq protocols.", "homepage": "https://github.com/stevemussmann/BayesAss3-SNPs"}, "BayesPrism": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BayesPrism/2.0-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Bayesian cell Proportion Reconstruction Inferred using Statistical Marginalization (BayesPrism): A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression", "homepage": "https://github.com/Danko-Lab/BayesPrism"}, "Bazel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Bazel/3.7.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bazel/3.7.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bazel/3.7.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bazel/5.1.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bazel/6.3.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bazel/6.3.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bazel/0.26.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bazel/0.29.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bazel/2.0.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bazel/2.0.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bazel/3.6.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bazel/3.4.1-GCCcore-8.3.0": {"clusters": ["donphan", "joltik", "skitty"]}, "Bazel/4.2.2-GCCcore-11.2.0": {"clusters": ["gallade"]}}, "description": "Bazel is a build tool that builds code quickly and reliably.It is used to build the majority of Google's software.", "homepage": "https://bazel.io/"}, "BBMap": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BBMap/38.98-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "BBMap/39.01-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BBMap/38.87-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BBMap short read aligner, and other bioinformatic tools.", "homepage": "https://sourceforge.net/projects/bbmap/"}, "bcbio-gff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bcbio-gff/0.7.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bcbio-gff/0.7.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Read and write Generic Feature Format (GFF) with Biopython integration.", "homepage": "https://github.com/chapmanb/bcbb/tree/master/gff"}, "BCFtools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BCFtools/1.11-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BCFtools/1.12-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "BCFtools/1.14-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BCFtools/1.15.1-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BCFtools/1.17-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BCFtools/1.18-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BCFtools/1.10.2-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BCFtools/1.10.2-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BCFtools/1.12-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants", "homepage": "https://www.htslib.org/"}, "bcgTree": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"bcgTree/1.2.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Automatized phylogenetic tree building from bacterial core genomes.", "homepage": "https://github.com/molbiodiv/bcgTree"}, "bcl-convert": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"bcl-convert/4.0.3-2el7.x86_64": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "The Illumina BCL Convert v4.0 is a standalone local software app that converts the Binary Base Call (BCL) files produced by Illumina sequencing systems to FASTQ files.", "homepage": "https://support.illumina.com/sequencing/sequencing_software/bcl-convert.html"}, "bcl2fastq2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"bcl2fastq2/2.20.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "bcl2fastq2/2.20.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.", "homepage": "https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html"}, "BDBag": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"BDBag/1.6.3-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "bagit-1.8.1, bagit_profile-1.3.1, bdbag-1.6.3, setuptools_scm-5.0.2, tzlocal-2.1"}}, "description": "The bdbag utilities are a collection of software programs forworking with BagIt packages that conform to the Bagit and Bagit/RO profiles.", "homepage": "https://github.com/fair-research/bdbag"}, "beagle-lib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"beagle-lib/3.1.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "beagle-lib/3.1.2-gcccuda-2019b": {"clusters": ["accelgor", "joltik"]}, "beagle-lib/4.0.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "beagle-lib/3.1.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages.", "homepage": "https://github.com/beagle-dev/beagle-lib"}, "Beast": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Beast/1.10.4-gcccuda-2019b": {"clusters": ["accelgor", "joltik"]}, "Beast/1.10.5pre1-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Beast/2.7.3-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Beast/2.6.4-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability.", "homepage": "http://beast2.org"}, "BeautifulSoup": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BeautifulSoup/4.10.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "BeautifulSoup-4.10.0, soupsieve-2.3.1"}, "BeautifulSoup/4.10.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "BeautifulSoup-4.10.0, soupsieve-2.3.1"}, "BeautifulSoup/4.10.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "BeautifulSoup-4.10.0, soupsieve-2.3.1"}, "BeautifulSoup/4.11.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "BeautifulSoup-4.11.1, hatchling-1.12.2, soupsieve-2.3.2.post1"}, "BeautifulSoup/4.12.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "BeautifulSoup-4.12.2, soupsieve-2.4.1"}}, "description": "Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.", "homepage": "https://www.crummy.com/software/BeautifulSoup"}, "BEDOPS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BEDOPS/2.4.41-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.", "homepage": "http://bedops.readthedocs.io/en/latest/index.html"}, "BEDTools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BEDTools/2.30.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BEDTools/2.30.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BEDTools/2.30.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BEDTools/2.31.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BEDTools/2.29.2-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BEDTools/2.29.2-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BEDTools/2.30.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "BEDTools/2.19.1-GCC-8.3.0": {"clusters": ["skitty"]}}, "description": "BEDTools: a powerful toolset for genome arithmetic.The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps andcomputing coverage.The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.", "homepage": "https://bedtools.readthedocs.io/"}, "BigDFT": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"BigDFT/1.9.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "BigDFT: electronic structure calculation based on Daubechies wavelets.bigdft-suite is a set of different packages to run bigdft.", "homepage": "https://gitlab.com/l_sim/bigdft-suite"}, "binutils": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"binutils/2.28": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.32-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.32": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.34-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.34": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.35-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.35": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.36.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.36.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.37-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.37": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.38-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.38": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.39-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.39": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.40-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.40-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.40": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "binutils/2.31.1-GCCcore-8.2.0": {"clusters": ["doduo"]}, "binutils/2.31.1": {"clusters": ["doduo", "skitty"]}, "binutils/2.30": {"clusters": ["skitty"]}}, "description": "binutils: GNU binary utilities", "homepage": "https://directory.fsf.org/project/binutils/"}, "Bio-DB-HTS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Bio-DB-HTS/3.01-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Bio-DB-HTS/3.01-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Read files using HTSlib including BAM/CRAM, Tabix and BCF database files", "homepage": "https://metacpan.org/release/Bio-DB-HTS"}, "biobakery-workflows": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"biobakery-workflows/3.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "bioBakery workflows is a collection of workflows and tasks for executingcommon microbial community analyses using standardized, validated tools and parameters.Quality control and statistical summary reports are automatically generated for most datatypes, which include 16S amplicons, metagenomes, and metatranscriptomes. Workflows are rundirectly from the command line and tasks can be imported to create your own custom workflows.The workflows and tasks are built with AnADAMA2 which allows for parallel task execution locallyand in a grid compute environment.", "homepage": "http://huttenhower.sph.harvard.edu/biobakery_workflows"}, "biobambam2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"biobambam2/2.0.87-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "biobambam2/2.0.185-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Tools for processing BAM files", "homepage": "https://github.com/gt1/biobambam2"}, "biogeme": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"biogeme/3.2.6-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "biogeme-3.2.6, Unidecode-1.3.6"}, "biogeme/3.2.10-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "biogeme-3.2.10, Unidecode-1.3.6"}}, "description": "Biogeme is a open source Python package designed forthe maximum likelihood estimation of parametric models in general,with a special emphasis on discrete choice models.", "homepage": "https://pypi.python.org/pypi/biogeme"}, "biom-format": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"biom-format/2.1.12-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "biom-format/2.1.14-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "biom-format/2.1.15-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project.", "homepage": "https://biom-format.org"}, "BioPerl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BioPerl/1.7.8-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::DOM::XPath-0.14, XML::Writer-0.900"}, "BioPerl/1.7.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Bio::DB::SeqFeature-1.7.4, Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::DOM::XPath-0.14, XML::Writer-0.900"}, "BioPerl/1.7.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BioPerl/1.7.7-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Bio::Procedural-1.7.4, BioPerl-1.7.7, XML::DOM::XPath-0.14, XML::Writer-0.625"}, "BioPerl/1.7.8-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::DOM::XPath-0.14, XML::Writer-0.900"}}, "description": "Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.", "homepage": "https://bioperl.org/"}, "Biopython": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Biopython/1.76-foss-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Biopython/1.78-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Biopython/1.78-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "Biopython/1.79-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Biopython/1.79-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Biopython/1.79-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Biopython/1.81-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Biopython/1.83-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Biopython/1.75-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Biopython/1.75-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Biopython/1.75-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Biopython/1.76-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Biopython/1.78-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Biopython/1.78-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Biopython/1.78-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.", "homepage": "https://www.biopython.org"}, "Bismark": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Bismark/0.23.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "A tool to map bisulfite converted sequence reads and determine cytosine methylation states", "homepage": "https://www.bioinformatics.babraham.ac.uk/projects/bismark/"}, "Bison": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Bison/3.0.4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.3.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.5.3-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.5.3": {"clusters": ["accelgor", "doduo", "donphan", "joltik"]}, "Bison/3.7.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.7.1": {"clusters": ["accelgor", "doduo", "donphan", "joltik"]}, "Bison/3.7.6-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.7.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.7.6": {"clusters": ["accelgor", "doduo", "donphan", "joltik"]}, "Bison/3.8.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.8.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.8.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.8.2-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bison/3.0.5-GCCcore-8.2.0": {"clusters": ["doduo"]}, "Bison/3.0.5": {"clusters": ["doduo", "skitty"]}}, "description": "Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.", "homepage": "http://www.gnu.org/software/bison"}, "BLAST+": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BLAST+/2.11.0-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLAST+/2.12.0-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLAST+/2.13.0-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLAST+/2.14.0-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLAST+/2.14.1-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLAST+/2.9.0-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BLAST+/2.9.0-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BLAST+/2.10.1-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BLAST+/2.10.1-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BLAST+/2.11.0-gompi-2021a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.", "homepage": "https://blast.ncbi.nlm.nih.gov/"}, "BLAT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BLAT/3.7-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLAT/3.5-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BLAT/3.5-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "BLAT on DNA is designed to quickly find sequences of 95% andgreater similarity of length 25 bases or more.", "homepage": "https://genome.ucsc.edu/FAQ/FAQblat.html"}, "Blender": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Blender/3.3.1-linux-x86_64-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"]}, "Blender/3.3.1-linux-x86_64": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Blender/3.5.0-linux-x86_64-CUDA-11.7.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Blender/2.81-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Blender/2.81-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation.", "homepage": "https://www.blender.org/"}, "BLIS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BLIS/0.8.1-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLIS/0.8.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLIS/0.9.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLIS/0.9.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLIS/0.9.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLIS/0.9.0-GCC-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BLIS/0.8.0-GCCcore-10.2.0": {"clusters": ["doduo"]}}, "description": "BLIS is a portable software framework for instantiating high-performanceBLAS-like dense linear algebra libraries.", "homepage": "https://github.com/flame/blis/"}, "Block": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Block/1.5.3-20200525-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Block/1.5.3-20200525-foss-2022a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Block implements the density matrix renormalization group (DMRG) algorithm forquantum chemistry.", "homepage": "https://sanshar.github.io/Block/"}, "Blosc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Blosc/1.17.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Blosc/1.21.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Blosc/1.21.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Blosc/1.21.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Blosc/1.17.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Blosc/1.21.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Blosc, an extremely fast, multi-threaded, meta-compressor library", "homepage": "https://www.blosc.org/"}, "Blosc2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Blosc2/2.6.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Blosc, an extremely fast, multi-threaded, meta-compressor library", "homepage": "https://www.blosc.org/"}, "bokeh": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bokeh/2.2.3-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "bokeh-2.2.3, tornado-6.1"}, "bokeh/2.4.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "bokeh-2.4.1, tornado-6.1"}, "bokeh/2.4.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bokeh-2.4.2, tornado-6.1"}, "bokeh/2.4.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bokeh-2.4.3, tornado-6.1"}, "bokeh/3.2.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bokeh-3.2.2, contourpy-1.0.7, xyzservices-2023.7.0"}, "bokeh/1.4.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bokeh-1.4.0, tornado-6.0.3"}, "bokeh/1.4.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bokeh-1.4.0, tornado-6.0.3"}, "bokeh/2.0.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bokeh-2.0.2, tornado-6.0.4, typing-extensions-3.7.4.2"}, "bokeh/2.0.2-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bokeh-2.0.2, tornado-6.0.4, typing-extensions-3.7.4.2"}, "bokeh/2.2.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bokeh-2.2.3, tornado-6.1"}, "bokeh/2.2.3-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bokeh-2.2.3, tornado-6.1"}}, "description": "Statistical and novel interactive HTML plots for Python", "homepage": "https://github.com/bokeh/bokeh"}, "Boost.MPI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Boost.MPI/1.77.0-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Boost.MPI/1.81.0-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost.MPI/1.79.0-gompi-2022a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Boost provides free peer-reviewed portable C++ source libraries.", "homepage": "https://www.boost.org/"}, "Boost.Python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Boost.Python/1.77.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Boost.Python/1.79.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost.Python/1.71.0-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Boost.Python/1.72.0-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.", "homepage": "https://boostorg.github.io/python"}, "Boost": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Boost/1.71.0-gompi-2019b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Boost/1.72.0-iimpi-2020a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.74.0-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.75.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.76.0-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.77.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.77.0-intel-compilers-2021.4.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.79.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.79.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.81.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.82.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.71.0-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Boost/1.72.0-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Boost/1.72.0-iompi-2020a": {"clusters": ["doduo"]}, "Boost/1.74.0-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Boost/1.76.0-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Boost provides free peer-reviewed portable C++ source libraries.", "homepage": "https://www.boost.org/"}, "boto3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"boto3/1.20.13-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "boto3-1.20.13, botocore-1.23.13, jmespath-0.10.0, s3transfer-0.5.0"}, "boto3/1.20.13-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "boto3-1.20.13, botocore-1.23.13, jmespath-0.10.0, s3transfer-0.5.0"}, "boto3/1.26.163-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "boto3-1.26.163, botocore-1.29.163, jmespath-1.0.1, s3transfer-0.6.1"}, "boto3/1.34.10-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "boto3-1.34.10, botocore-1.34.12, jmespath-1.0.1, s3transfer-0.10.0"}}, "description": "Boto3 is the Amazon Web Services (AWS) Software Development Kit(SDK) for Python, which allows Python developers to write software that makesuse of services like Amazon S3 and Amazon EC2.", "homepage": "https://github.com/boto/boto3"}, "Bowtie": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Bowtie/1.3.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bowtie/1.3.1-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bowtie/1.2.3-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bowtie/1.2.3-iccifort-2019.5.281": {"clusters": ["doduo"]}, "Bowtie/1.3.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome.", "homepage": "http://bowtie-bio.sourceforge.net/index.shtml"}, "Bowtie2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Bowtie2/2.4.4-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Bowtie2/2.4.5-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Bowtie2/2.3.5.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bowtie2/2.3.5.1-iccifort-2019.5.281": {"clusters": ["doduo"]}, "Bowtie2/2.4.1-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Bowtie2/2.4.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.", "homepage": "http://bowtie-bio.sourceforge.net/bowtie2/index.shtml"}, "Bracken": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Bracken/2.7-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Bracken/2.9-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. Braken uses the taxonomy labels assigned by Kraken, a highly accurate metagenomics classification algorithm, to estimate the number of reads originating from each species present in a sample. Kraken classifies reads to the best matching location in the taxonomic tree, but does not estimate abundances of species. We use the Kraken database itself to derive probabilities that describe how much sequence from each genome is identical to other genomes in the database, and combine this information with the assignments for a particular sample to estimate abundance at the species level, the genus level, or above. Combined with the Kraken classifier, Bracken produces accurate species- and genus-level abundance estimates even when a sample contains two or more near-identical species.NOTE: Bracken is compatible with both Kraken 1 and Kraken 2. However, the default kmer length is different depending on the version of Kraken used. If you use Kraken 1 defaults, specify 31 as the kmer length. If you use Kraken 2 defaults, specify 35 as the kmer length.", "homepage": "https://ccb.jhu.edu/software/bracken/"}, "BRAKER": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BRAKER/2.1.6-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "BRAKER/2.1.6-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BRAKER/2.1.5-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BRAKER is a pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes.", "homepage": "https://github.com/Gaius-Augustus/BRAKER"}, "Brotli-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Brotli-python/1.0.9-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli-python/1.0.9-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression.The specification of the Brotli Compressed Data Format is defined in RFC 7932.", "homepage": "https://github.com/google/brotli"}, "Brotli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Brotli/1.0.9-GCCcore-10.2.0": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.0.9-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.0.9-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.0.9-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.0.9-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.0.9-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brotli/1.1.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression.The specification of the Brotli Compressed Data Format is defined in RFC 7932.", "homepage": "https://github.com/google/brotli"}, "Brunsli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Brunsli/0.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brunsli/0.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Brunsli/0.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Brunsli is a lossless JPEG repacking library.", "homepage": "https://github.com/google/brunsli/"}, "btllib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"btllib/1.7.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Bioinformatics Technology Lab common code library", "homepage": "https://github.com/bcgsc/btllib"}, "build": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"build/0.10.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "build-0.10.0, pyproject_hooks-1.0.0"}}, "description": "A simple, correct Python build frontend.", "homepage": "https://github.com/pypa/build"}, "buildingspy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"buildingspy/4.0.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "buildingspy-4.0.0, Cerberus-1.3.4, pyfunnel-0.3.0, pytidylib-0.3.2"}}, "description": "Python modules for automating Modelica simulations and for running unit test for the Buildings library", "homepage": "https://simulationresearch.lbl.gov/modelica/buildingspy"}, "BUSCO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BUSCO/5.4.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "BUSCO/4.0.5-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BUSCO/4.0.6-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "BUSCO/4.1.2-foss-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BUSCO/5.1.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik"]}}, "description": "BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs", "homepage": "https://busco.ezlab.org/"}, "BUStools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BUStools/0.43.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "bustools is a program for manipulating BUS files for single cell RNA-Seq datasets. It can be used to error correct barcodes, collapse UMIs, produce gene count or transcript compatibility count matrices, and is useful for many other tasks. See the kallisto | bustools website for examples and instructions on how to use bustools as part of a single-cell RNA-seq workflow.", "homepage": "https://github.com/BUStools/bustools"}, "bwa-meth": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bwa-meth/0.2.6-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bwa-meth-0.2.6, toolshed-0.4.6"}, "bwa-meth/0.2.2-iccifort-2019.5.281": {"clusters": ["doduo"], "extensions": "bwa-meth-0.2.2, toolshed-0.4.0"}}, "description": "Fast and accurante alignment of BS-Seq reads.", "homepage": "https://github.com/brentp/bwa-meth"}, "BWA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"BWA/0.7.17-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BWA/0.7.17-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BWA/0.7.17-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BWA/0.7.17-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "BWA/0.7.17-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BWA/0.7.17-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BWA/0.7.17-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "BWA/0.7.17-iccifort-2019.5.281": {"clusters": ["doduo"]}}, "description": "Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.", "homepage": "http://bio-bwa.sourceforge.net/"}, "bwidget": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bwidget/1.9.15-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The BWidget Toolkit is a high-level Widget Set for Tcl/Tk built using native Tcl/Tk 8.x namespaces.", "homepage": "https://core.tcl-lang.org/bwidget/home"}, "bx-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bx-python/0.8.13-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "bx-python-0.8.13, python-lzo-1.14"}, "bx-python/0.9.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bx-python-0.9.0, python-lzo-1.14"}, "bx-python/0.10.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bx-python-0.10.0, python-lzo-1.15"}, "bx-python/0.8.9-foss-2020a-Python-3.8.2": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "bx-python-0.8.9, python-lzo-1.12"}}, "description": "The bx-python project is a Python library and associated set of scripts to allow for rapid implementation of genome scale analyses.", "homepage": "https://github.com/bxlab/bx-python"}, "bzip2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bzip2/1.0.8-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.8-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "bzip2/1.0.6-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.", "homepage": "https://sourceware.org/bzip2"}, "c-ares": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"c-ares/1.18.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "c-ares/1.17.2-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "c-ares is a C library for asynchronous DNS requests (including name resolves)", "homepage": "https://c-ares.haxx.se"}, "cairo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cairo/1.16.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "cairo/1.16.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.16.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.16.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.16.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.17.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.17.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cairo/1.17.8-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB", "homepage": "https://cairographics.org"}, "Cantera": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cantera/2.6.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Cantera/3.0.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Chemical kinetics, thermodynamics, and transport tool suite", "homepage": "https://github.com/Cantera/cantera"}, "canu": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"canu/2.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "canu/2.1.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "canu/2.2-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "canu/1.9-GCCcore-8.3.0-Java-11": {"clusters": ["donphan", "joltik"]}}, "description": "Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing", "homepage": "https://canu.readthedocs.io"}, "CapnProto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CapnProto/0.9.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CapnProto/1.0.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CapnProto/0.8.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "gallade", "skitty"]}}, "description": "Cap\u2019n Proto is an insanely fast data interchange format and capability-based RPC system.", "homepage": "https://capnproto.org"}, "Cartopy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cartopy/0.20.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cartopy-0.20.3, OWSLib-0.26.0, pyepsg-0.4.0, pykdtree-1.3.5, pyproj-3.2.1, pyshp-2.3.1"}, "Cartopy/0.20.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cartopy-0.20.3, OWSLib-0.27.2, pyepsg-0.4.0, pykdtree-1.3.5, pyshp-2.3.1"}, "Cartopy/0.22.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cartopy-0.22.0, OWSLib-0.29.3, pyepsg-0.4.0, pykdtree-1.3.10, pyshp-2.3.1"}, "Cartopy/0.18.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Cartopy-0.18.0, OWSLib-0.20.0, pyepsg-0.4.0, pykdtree-1.3.1, pyshp-2.1.0"}, "Cartopy/0.19.0.post1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cartopy-0.19.0.post1, OWSLib-0.24.1, pyepsg-0.4.0, pykdtree-1.3.4, pyshp-2.1.3"}, "Cartopy/0.19.0.post1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Cartopy-0.19.0.post1, OWSLib-0.24.1, pyepsg-0.4.0, pykdtree-1.3.4, pyshp-2.1.3"}}, "description": "Cartopy is a Python package designed to make drawing maps for data analysis and visualisation easy.", "homepage": "https://scitools.org.uk/cartopy/docs/latest/"}, "Casanovo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Casanovo/3.3.0-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "casanovo-3.3.0, Deprecated-1.2.13, depthcharge-ms-0.1.0, fastobo-0.12.2, lark-1.1.5, natsort-8.3.1, PyGithub-1.58.1, pyteomics-4.5.6, spectrum-utils-0.4.1"}, "Casanovo/3.3.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "casanovo-3.3.0, Deprecated-1.2.13, depthcharge-ms-0.1.0, fastobo-0.12.2, lark-1.1.5, natsort-8.3.1, PyGithub-1.58.1, pyteomics-4.5.6, spectrum-utils-0.4.1"}}, "description": "De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model", "homepage": "https://casanovo.readthedocs.io"}, "CASPR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CASPR/20200730-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Running CASPR is extremely easy and convenient to analyze CRIPR-Cas9 screens using pgRNAs.", "homepage": "https://judithbergada.github.io/CASPR"}, "CatBoost": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CatBoost/1.2-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CatBoost-1.2"}}, "description": "CatBoost is a high-performance open source library for gradient boosting on decision trees", "homepage": "https://catboost.ai"}, "Catch2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Catch2/2.13.9-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Catch2/2.13.9-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Catch2/2.13.9-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later", "homepage": "https://github.com/catchorg/Catch2"}, "CatLearn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CatLearn/0.6.2-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CatLearn-0.6.2"}}, "description": "An environment for atomistic machine learning in Python for applications in catalysis", "homepage": "https://catlearn.readthedocs.io"}, "CatMAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CatMAP/20220519-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CatMAP-20220519"}}, "description": "Catalyst Micro-kinetic Analysis Package for automated creation of micro-kinetic models used in catalyst screening.", "homepage": "https://catmap.readthedocs.io"}, "Cbc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cbc/2.10.5-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Cbc/2.10.11-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Cbc (Coin-or branch and cut) is an open-source mixed integer linear programmingsolver written in C++. It can be used as a callable library or using astand-alone executable.", "homepage": "https://github.com/coin-or/Cbc"}, "ccache": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ccache/4.6.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Ccache (or \u201cccache\u201d) is a compiler cache. It speeds up recompilation bycaching previous compilations and detecting when the same compilation is being done again", "homepage": "https://ccache.dev/"}, "CCL": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CCL/1.12.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Clozure CL (often called CCL for short) is a free Common Lisp implementation with a long history. Some distinguishing features of the implementation include fast compilation speed, native threads, a precise, generational, compacting garbage collector, and a convenient foreign-function interface.", "homepage": "https://ccl.clozure.com/"}, "cctbx-base": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cctbx-base/2020.8-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cctbx-base-2020.8, reportlab-3.5.66"}, "cctbx-base/2020.8-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "cctbx-base-2020.8, reportlab-3.5.66"}, "cctbx-base/2023.5-foss-2022a": {"clusters": ["donphan", "joltik"]}}, "description": "Computational Crystallography Toolbox", "homepage": "https://github.com/cctbx/cctbx_project"}, "CD-HIT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CD-HIT/4.8.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CD-HIT/4.8.1-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CD-HIT/4.8.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CD-HIT/4.8.1-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CD-HIT/4.8.1-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "CD-HIT/4.8.1-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.", "homepage": "https://github.com/weizhongli/cdhit"}, "CDBtools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CDBtools/0.99-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "CDB (Constant DataBase) indexing and retrieval tools for FASTA files", "homepage": "http://compbio.dfci.harvard.edu/tgi"}, "cdo-bindings": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cdo-bindings/1.5.7-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cdo-1.5.7"}}, "description": "Python interface to CDO.", "homepage": "https://github.com/Try2Code/cdo-bindings"}, "CDO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CDO/1.9.10-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CDO/2.0.5-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CDO/1.9.8-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data.", "homepage": "https://code.zmaw.de/projects/cdo"}, "cdsapi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"cdsapi/0.5.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Climate Data Store API", "homepage": "https://pypi.org/project/cdsapi"}, "CellBender": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellBender/0.3.1-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "cellbender-0.3.1, comm-0.2.1, ipykernel-6.20.2, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-4.12.0, setuptools-69.0.3, traitlets-5.14.1"}, "CellBender/0.3.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cellbender-0.3.1, comm-0.2.1, ipykernel-6.20.2, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-4.12.0, setuptools-69.0.3, traitlets-5.14.1"}}, "description": "CellBender is a software package for eliminating technical artifacts fromhigh-throughput single-cell RNA sequencing (scRNA-seq) data.", "homepage": "http://github.com/broadinstitute/CellBender"}, "CellOracle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellOracle/0.12.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "celloracle-0.12.0, jupyter-1.0.0, jupyter-console-6.4.4"}}, "description": "CellOracle is a Python library for in silico gene perturbation analyses using single-cell omics dataand Gene Regulatory Network models.", "homepage": "https://github.com/morris-lab/CellOracle"}, "Cellpose": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cellpose/2.2.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "Cellpose-2.2.2, fastremap-1.13.5, natsort-8.3.1, roifile-2023.5.12, tifffile-2023.4.12"}, "Cellpose/2.2.2-foss-2022a": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cellpose-2.2.2, fastremap-1.13.5, natsort-8.3.1, roifile-2023.5.12, tifffile-2023.4.12"}}, "description": "a generalist algorithm for cellular segmentation", "homepage": "https://www.cellpose.org"}, "CellProfiler": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CellProfiler/4.2.4-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "CellProfiler-4.2.4, cellprofiler-core-4.2.4, centrosome-1.2.1, deprecation-2.1.0, h5py-3.6.0, inflect-6.0.2, mahotas-1.4.13, prokaryote-2.4.4, pydantic-1.10.2, python-bioformats-4.0.6, python-javabridge-4.0.3, pyzmq-22.3.0, sentry-sdk-1.10.1, typing_extensions-4.4.0, urllib3-1.26.12"}}, "description": "CellProfiler is a free open-source software designed to enable biologists without training incomputer vision or programming to quantitatively measure phenotypes from thousands of images automatically.", "homepage": "http://cellprofiler.org/"}, "CellRanger-ATAC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellRanger-ATAC/2.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CellRanger-ATAC/2.0.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Cell Ranger ATAC is a set of analysis pipelines that process Chromium Single Cell ATAC data.", "homepage": "https://support.10xgenomics.com/single-cell-atac/software/pipelines/latest/what-is-cell-ranger-atac"}, "CellRank": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellRank/2.0.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cellrank-2.0.2, docrep-0.3.2, progressbar2-4.3.2, pygam-0.9.0, pygpcca-1.0.4, python-utils-3.8.1"}, "CellRank/1.4.0-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "CellRank-1.4.0, docrep-0.3.2, joblib-1.0.1, progressbar2-3.53.1, pygam-0.8.0, pygpcca-1.0.2, python-utils-2.5.6, wrapt-1.12.1"}}, "description": "CellRank is a toolkit to uncover cellular dynamics based on Markov state modeling of single-cell data. It contains two main modules:kernels compute cell-cell transition probabilities and estimators generatehypothesis based on these.", "homepage": "https://cellrank.readthedocs.io/en/stable/"}, "CellTypist": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellTypist/1.0.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CellTypist/1.6.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "celltypist-1.6.2"}}, "description": "A tool for semi-automatic cell type annotation", "homepage": "https://www.celltypist.org/"}, "CENSO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CENSO/1.2.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CENSO-1.2.0"}}, "description": "Commandline Energetic SOrting (CENSO) is a sorting algorithm for efficient evaluation of Structure Ensembles (SE). The input ensemble (or single structure) originating from a CREST[SQM/FF] run can be ranked by free energy at DFT level and/or geometries can be optimized using DFT.", "homepage": "https://xtb-docs.readthedocs.io/en/latest/CENSO_docs/censo.html"}, "Cereal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cereal/1.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to befast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.", "homepage": "https://uscilab.github.io/cereal/"}, "Ceres-Solver": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Ceres-Solver/2.2.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Ceres Solver is an open source C++ library for modeling and solving large, complicated optimizationproblems", "homepage": "http://ceres-solver.org"}, "CESM-deps": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CESM-deps/2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "CESM is a fully-coupled, community, global climate model thatprovides state-of-the-art computer simulations of the Earth's past, present,and future climate states.", "homepage": "https://www.cesm.ucar.edu/models/cesm2/"}, "cffi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cffi/1.15.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cffi-1.15.1, pycparser-2.21"}, "cffi/1.15.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cffi-1.15.1, pycparser-2.21"}, "cffi/1.15.1-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cffi-1.15.1, pycparser-2.21"}}, "description": "C Foreign Function Interface for Python. Interact with almost any C code fromPython, based on C-like declarations that you can often copy-paste from headerfiles or documentation.", "homepage": "https://cffi.readthedocs.io/en/latest/"}, "CFITSIO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CFITSIO/3.49-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CFITSIO/4.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CFITSIO/4.2.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CFITSIO/4.2.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CFITSIO/4.3.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CFITSIO/3.47-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CFITSIO is a library of C and Fortran subroutines for reading and writing data files inFITS (Flexible Image Transport System) data format.", "homepage": "https://heasarc.gsfc.nasa.gov/fitsio/"}, "CGAL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CGAL/4.14.1-foss-2019b-Python-3.7.4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CGAL/4.14.3-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/4.14.3-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/4.14.3-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/5.2-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/5.5.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/5.6-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CGAL/4.14.1-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CGAL/4.14.3-gompi-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CGAL/4.14.3-iimpi-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CGAL/5.2-iimpi-2020b": {"clusters": ["doduo"]}}, "description": "The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.", "homepage": "https://www.cgal.org/"}, "Cgl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cgl/0.60.7-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Cgl/0.60.8-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators thatcan be used with other COIN-OR packages that make use of cuts, such as, amongothers, the linear solver Clp or the mixed integer linear programming solversCbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use orcommunicate with a solver. It does not directly call a solver.", "homepage": "https://github.com/coin-or/Cgl"}, "CharLS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CharLS/2.4.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CharLS is a C++ implementation of the JPEG-LS standard for lossless and near-lossless imagecompression and decompression. JPEG-LS is a low-complexity image compression standard that matches JPEG 2000compression ratios.", "homepage": "https://github.com/team-charls/charls"}, "Check": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Check/0.15.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Check is a unit testing framework for C. It features a simple interface fordefining unit tests, putting little in the way of the developer. Tests arerun in a separate address space, so both assertion failures and code errorsthat cause segmentation faults or other signals can be caught. Test resultsare reportable in the following: Subunit, TAP, XML, and a generic loggingformat.", "homepage": "https://libcheck.github.io/check/"}, "CheckM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CheckM/1.1.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CheckM/1.0.18-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "CheckM/1.1.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CheckM/1.1.2-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CheckM/1.1.3-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.", "homepage": "https://github.com/Ecogenomics/CheckM"}, "chemprop": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"chemprop/1.5.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "chemprop-1.5.2, mypy_extensions-1.0.0, packaging-20.4, pandas_flavor-0.2.0, typed-argument-parser-1.7.2, typing_inspect-0.8.0"}, "chemprop/1.5.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "chemprop-1.5.2, mypy_extensions-1.0.0, packaging-20.4, pandas_flavor-0.2.0, typed-argument-parser-1.7.2, typing_inspect-0.8.0"}}, "description": "Message Passing Neural Networks for Molecule Property Prediction", "homepage": "https://github.com/chemprop/chemprop"}, "CheMPS2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CheMPS2/1.8.12-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CheMPS2/1.8.12-foss-2022a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CheMPS2 is a scientific library which contains a spin-adapted implementation of thedensity matrix renormalization group (DMRG) for ab initio quantum chemistry.", "homepage": "https://github.com/SebWouters/CheMPS2"}, "Chimera": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Chimera/1.16-linux_x86_64": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles.", "homepage": "https://www.cgl.ucsf.edu/chimera/"}, "cicero": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cicero/1.3.8-foss-2022a-R-4.2.1-Monocle3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cicero/1.3.4.11-foss-2020b-R-4.0.3-Monocle3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Cicero is an R package that provides tools for analyzing single-cell chromatin accessibility experiments.", "homepage": "https://cole-trapnell-lab.github.io/cicero-release"}, "cimfomfa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cimfomfa/22.273-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "This library supports both MCL, a cluster algorithm for graphs, and zoem, amacro/DSL language. It supplies abstractions for memory management, I/O,associative arrays, strings, heaps, and a few other things. The string libraryhas had heavy testing as part of zoem. Both understandably and regrettably Ichose long ago to make it C-string-compatible, hence nul bytes may not be partof a string. At some point I hope to rectify this, perhaps unrealistically.", "homepage": "https://github.com/micans/cimfomfa"}, "CIRCexplorer2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CIRCexplorer2/2.3.8-foss-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CIRCexplorer2/2.3.8-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CIRCexplorer2 is a comprehensive and integrative circular RNA analysis toolset.", "homepage": "http://circexplorer2.readthedocs.io/"}, "Circlator": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Circlator/1.5.5-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Circlator-1.5.5, pymummer-0.11.0"}}, "description": "A tool to circularize genome assemblies.s", "homepage": "https://github.com/sanger-pathogens/circlator/"}, "Circuitscape": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Circuitscape/5.12.3-Julia-1.7.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "AbstractFFTs-1.2.1, Adapt-3.4.0, AlgebraicMultigrid-0.5.1, ArchGDAL-0.8.5, ArnoldiMethod-0.2.0, Arrow_jll-10.0.0+1, boost_jll-1.76.0+1, Bzip2_jll-1.0.8+0, CEnum-0.4.2, ChainRulesCore-1.15.6, ChangesOfVariables-0.1.4, Circuitscape-5.12.3, Colors-0.12.10, ColorSchemes-3.20.0, ColorTypes-0.11.4, ColorVectorSpace-0.9.9, CommonSolve-0.2.3, Compat-4.5.0, DataAPI-1.14.0, DataStructures-0.18.13, DataValueInterfaces-1.0.0, DiskArrays-0.3.8, DocStringExtensions-0.9.3, Expat_jll-2.4.8+0, FixedPointNumbers-0.8.4, GDAL-1.5.0, GDAL_jll-301.600.100+0, GeoFormatTypes-0.4.1, GeoInterface-0.5.7, GEOS_jll-3.11.0+0, Graphics-1.1.2, Graphs-1.7.4, GZip-0.5.1, HDF5_jll-1.12.2+2, ImageCore-0.9.4, Inflate-0.1.3, IntelOpenMP_jll-2018.0.3+2, InverseFunctions-0.1.8, IrrationalConstants-0.1.1, IterativeSolvers-0.9.2, IteratorInterfaceExtensions-1.0.0, JLLWrappers-1.4.1, JpegTurbo_jll-2.1.2+0, Kerberos_krb5_jll-1.19.3+0, LERC_jll-3.0.0+1, libgeotiff_jll-100.700.100+0, Libiconv_jll-1.16.1+2, libpng_jll-1.6.37+5, LibPQ_jll-14.3.0+1, Libtiff_jll-4.4.0+0, LittleCMS_jll-2.12.0+0, LogExpFunctions-0.3.19, Lz4_jll-1.9.3+0, LZO_jll-2.10.1+0, MacroTools-0.5.10, MappedArrays-0.4.1, MKL_jll-2022.2.0+0, MosaicViews-0.3.4, NaNMath-1.0.1, NetCDF_jll-400.902.5+1, OffsetArrays-1.12.8, OpenJpeg_jll-2.4.0+0, OpenSpecFun_jll-0.5.5+0, OpenSSL_jll-1.1.19+0, OrderedCollections-1.4.1, PaddedViews-0.5.11, Pardiso-0.5.4, PlotUtils-1.3.4, Preferences-1.3.0, PROJ_jll-900.100.0+0, RecipesBase-1.3.0, Reexport-1.2.2, SimpleTraits-0.9.4, SimpleWeightedGraphs-1.2.1, snappy_jll-1.1.9+1, SnoopPrecompile-2.9.5, SpecialFunctions-2.1.7, SQLite_jll-3.40.0+1, StackViews-0.1.1, StaticArrays-1.5.11, StaticArraysCore-1.4.0, Tables-1.10.0, TableTraits-1.0.1, TensorCore-0.1.1, Thrift_jll-0.16.0+0, XML2_jll-2.9.14+0, Zstd_jll-1.5.2+0"}}, "description": "Algorithms from circuit theory to predict connectivity in heterogeneous landscapes", "homepage": "https://github.com/Circuitscape/Circuitscape.jl"}, "CIRIquant": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CIRIquant/1.1.2-20221201-foss-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argparse-1.4.0, CIRIquant-1.1.2-20221201"}}, "description": "CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data", "homepage": "https://github.com/bioinfo-biols/CIRIquant"}, "Clair3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Clair3/1.0.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Clair3 is a germline small variant caller for long-reads.Clair3 makes the best of two major method categories: pileup calling handlesmost variant candidates with speed, and full-alignment tackles complicated candidatesto maximize precision and recall. Clair3 runs fast and has superior performance,especially at lower coverage. Clair3 is simple and modular for easy deployment andintegration.", "homepage": "https://github.com/HKU-BAL/Clair3"}, "Clang": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Clang/9.0.1-GCC-8.3.0-CUDA-10.1.243": {"clusters": ["accelgor", "joltik"]}, "Clang/12.0.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/12.0.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/13.0.1-GCCcore-11.3.0-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "Clang/13.0.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/15.0.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/16.0.6-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/9.0.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Clang/10.0.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Clang/11.0.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clang/11.0.1-gcccuda-2020b": {"clusters": ["joltik"]}}, "description": "C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.", "homepage": "https://clang.llvm.org/"}, "CLEAR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CLEAR/20210117-foss-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Direct comparison of circular and linear RNA expression", "homepage": "https://github.com/YangLab/CLEAR"}, "CLHEP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CLHEP/2.4.4.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CLHEP/2.4.5.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CLHEP/2.4.5.3-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CLHEP/2.4.6.4-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CLHEP/2.4.1.3-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The CLHEP project is intended to be a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra. CLHEP is structured in a set of packages independent of any external package.", "homepage": "https://proj-clhep.web.cern.ch/proj-clhep/"}, "Clp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Clp/1.17.7-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Clp/1.17.8-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Clp/1.17.9-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Clp (Coin-or linear programming) is an open-source linear programming solver.It is primarily meant to be used as a callable library, but a basic,stand-alone executable version is also available.", "homepage": "https://github.com/coin-or/Clp"}, "Clustal-Omega": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Clustal-Omega/1.2.4-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Clustal-Omega/1.2.4-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Clustal Omega is a multiple sequence alignment program for proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms", "homepage": "http://www.clustal.org/omega/"}, "CMake": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CMake/3.12.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.15.3-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.16.4-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.18.4-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.20.1-GCCcore-10.2.0": {"clusters": ["accelgor"]}, "CMake/3.20.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.21.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.22.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.23.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.24.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.24.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.26.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.27.6-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CMake/3.11.4-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CMake/3.13.3-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.", "homepage": "https://www.cmake.org"}, "CMAverse": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CMAverse/20220112-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "The R package CMAverse provides a suite of functions for reproducible causal mediation analysisincluding cmdag for DAG visualization, cmest for statistical modeling and cmsens for sensitivity analysis.", "homepage": "https://bs1125.github.io/CMAverse/"}, "CmdStanR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CmdStanR/0.5.0-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CmdStanR/0.5.2-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CmdStanR/0.7.1-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CmdStanR is a lightweight interface to Stan for R users", "homepage": "https://mc-stan.org/cmdstanr"}, "CMSeq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CMSeq/1.0.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus.", "homepage": "https://github.com/SegataLab/cmseq/"}, "CodAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CodAn/1.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CodAn (Coding sequence Annotator) is a computational tool designed to characterize the CDS and UTRregions on transcripts from any Eukaryote species.", "homepage": "https://github.com/pedronachtigall/CodAn"}, "code-cli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"code-cli/1.85.1-x64": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos.", "homepage": "https://code.visualstudio.com/"}, "code-server": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"code-server/4.9.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Run VS Code on any machine anywhere and access it in the browser.", "homepage": "https://github.com/cdr/code-server"}, "CoinUtils": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CoinUtils/2.11.6-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CoinUtils/2.11.9-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CoinUtils/2.11.10-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CoinUtils (Coin-OR Utilities) is an open-source collection of classes andfunctions that are generally useful to more than one COIN-OR project.", "homepage": "https://github.com/coin-or/CoinUtils"}, "ColabFold": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"ColabFold/1.5.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "colabfold-1.5.2"}, "ColabFold/1.5.2-foss-2022a": {"clusters": ["donphan", "joltik"], "extensions": "colabfold-1.5.2"}}, "description": "Making protein folding accessible to all. Predict proteins structures both ingoogle colab and on your machine.", "homepage": "https://github.com/sokrypton/ColabFold"}, "COLMAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"COLMAP/3.8-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipelinewith a graphical and command-line interface", "homepage": "https://colmap.github.io"}, "colossalai": {"clusters": ["accelgor", "joltik"], "versions": {"colossalai/0.1.8-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "cfgv-3.3.1, colossalai-0.1.8, commonmark-0.9.1, fabric-2.7.1, identify-2.5.1, invoke-1.7.1, nodeenv-1.6.0, pre_commit-2.19.0, rich-12.4.4"}}, "description": "Colossal-AI: A Unified Deep Learning System for Big Model Era", "homepage": "https://colossalai.org/"}, "CompareM": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"CompareM/0.1.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "biolib-0.1.9, comparem-0.1.2, future-0.18.2"}}, "description": "A toolbox for comparative genomics.", "homepage": "https://github.com/dparks1134/CompareM"}, "Compress-Raw-Zlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Compress-Raw-Zlib/2.202-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Low-Level Interface to zlib or zlib-ng compression library", "homepage": "https://metacpan.org/pod/Compress::Raw::Zlib"}, "conan": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"conan/1.58.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bottle-0.12.23, conan-1.58.0, distro-1.7.0, fasteners-0.18, node-semver-0.6.1, patch-ng-1.17.4, pluginbase-1.0.1, PyJWT-2.6.0"}, "conan/1.60.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bottle-0.12.25, conan-1.60.2, distro-1.8.0, fasteners-0.18, node-semver-0.6.1, patch-ng-1.17.4, pluginbase-1.0.1, PyJWT-2.8.0"}}, "description": "Decentralized, open-source (MIT), C/C++ package manager.", "homepage": "https://conan.io"}, "Concorde": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Concorde/20031219-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Concorde is a computer code for the symmetric traveling salesman problem (TSP) and some related network optimization problems", "homepage": "https://www.math.uwaterloo.ca/tsp/concorde.html"}, "configurable-http-proxy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"configurable-http-proxy/4.5.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server.", "homepage": "https://github.com/jupyterhub/configurable-http-proxy"}, "cooler": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cooler/0.9.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "asciitree-0.3.3, cooler-0.9.1, cytoolz-0.12.1, dill-0.3.6, multiprocess-0.70.14, setuptools-67.2.0, toolz-0.12.0"}}, "description": "Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices.", "homepage": "https://open2c.github.io/cooler"}, "CoordgenLibs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CoordgenLibs/3.0.1-iimpi-2020a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Schrodinger-developed 2D Coordinate Generation", "homepage": "https://github.com/schrodinger/coordgenlibs"}, "CopyKAT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CopyKAT/1.1.0-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CopyKAT/1.1.0-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CopyKAT: Inference of genomic copy number and subclonal structure of human tumors from high-throughput single cell RNAseq data", "homepage": "https://github.com/navinlabcode/copykat"}, "coverage": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"coverage/7.2.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "coverage/5.5-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Coverage.py is a tool for measuring code coverage of Python programs. It monitors your program, noting which parts of the code have been executed, then analyzes the source to identify code that could have been executed but was not.", "homepage": "https://coverage.readthedocs.io"}, "CP2K": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CP2K/9.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CP2K/2022.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CP2K/2023.1-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CP2K/2023.1-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CP2K/5.1-foss-2020a": {"clusters": ["doduo"]}, "CP2K/5.1-intel-2019b": {"clusters": ["doduo"]}, "CP2K/5.1-intel-2020a-O1": {"clusters": ["doduo"]}, "CP2K/5.1-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CP2K/5.1-iomkl-2020a": {"clusters": ["doduo"]}, "CP2K/6.1-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CP2K/7.1-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CP2K/7.1-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CP2K/8.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik"]}, "CP2K/8.2-foss-2021a": {"clusters": ["doduo", "donphan", "gallade", "joltik"]}}, "description": "CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.", "homepage": "https://www.cp2k.org/"}, "CPC2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CPC2/1.0.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "a fast and accurate coding potential calculator based on sequence intrinsic features", "homepage": "http://cpc2.gao-lab.org/"}, "CPLEX": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CPLEX/12.10-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "IBM ILOG CPLEX Optimizer's mathematical programming technology enables analytical decision support for improving efficiency, reducing costs, and increasing profitability.", "homepage": "https://www.ibm.com/analytics/cplex-optimizer"}, "CPPE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CPPE/0.3.1-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cppe-0.3.1"}, "CPPE/0.3.1-GCC-11.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cppe-0.3.1"}}, "description": "CPPE is an open-source, light-weight C++ and Python library for PolarizableEmbedding (PE)1,2 calculations. It provides an easy-to-use API to implement PEfor ground-state self-consistent field (SCF) calculations and post-SCF methods.A convenient Python interface is also available.", "homepage": "https://github.com/maxscheurer/cppe"}, "cppy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cppy/1.1.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cppy/1.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cppy/1.2.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cppy/1.2.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cppy/1.2.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A small C++ header library which makes it easier to writePython extension modules. The primary feature is a PyObject smart pointerwhich automatically handles reference counting and provides conveniencemethods for performing common object operations.", "homepage": "https://github.com/nucleic/cppy"}, "CREST": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CREST/2.12-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CREST is an utility/driver program for the xtb program. Originally it was designed as conformer sampling program, hence the abbreviation Conformer\u2013Rotamer Ensemble Sampling Tool, but now offers also some utility functions for calculations with the GFNn\u2013xTB methods. Generally the program functions as an IO based OMP scheduler (i.e., calculations are performed by the xtb program) and tool for the creation and analysation of structure ensembles.", "homepage": "https://xtb-docs.readthedocs.io/en/latest/crest.html"}, "cryoDRGN": {"clusters": ["accelgor", "joltik"], "versions": {"cryoDRGN/0.3.5-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "colorlover-0.3.0, cryodrgn-0.3.5, cufflinks-0.17.3, pynndescent-0.5.6, umap-learn-0.5.3"}, "cryoDRGN/1.0.0-beta-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "colorlover-0.3.0, cryodrgn-1.0.0-beta, cufflinks-0.17.3, pynndescent-0.5.6, umap-learn-0.5.3"}}, "description": "cryoDRGN: Deep Reconstructing Generative Networks for cryo-EM heterogeneous reconstruction. CryoDRGN is a neural network based algorithm for heterogeneous cryo-EM reconstruction. In particular, the method models a continuous distribution over 3D structures by using a neural network based representation for the volume.", "homepage": "https://cb.csail.mit.edu/cb/cryodrgn/"}, "cryptography": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cryptography/41.0.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cryptography/41.0.5-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "cryptography is a package designed to expose cryptographic primitives and recipes to Python developers.", "homepage": "https://github.com/pyca/cryptography"}, "CSBDeep": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CSBDeep/0.7.4-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "CSBDeep-0.7.4, tifffile-2023.9.26"}, "CSBDeep/0.7.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CSBDeep-0.7.4, tifffile-2023.9.26"}}, "description": "CSBDeep is a toolbox for Content-aware Image Restoration (CARE).", "homepage": "https://csbdeep.bioimagecomputing.com/"}, "CUDA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CUDA/10.1.243-GCC-8.3.0": {"clusters": ["accelgor", "joltik"]}, "CUDA/11.1.1-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CUDA/11.3.1": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "CUDA/11.4.1": {"clusters": ["accelgor", "joltik"]}, "CUDA/11.7.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CUDA/12.1.1": {"clusters": ["accelgor", "donphan", "joltik"]}, "CUDA/10.1.243-iccifort-2019.5.281": {"clusters": ["joltik"]}, "CUDA/11.0.2-iccifort-2020.1.217": {"clusters": ["joltik"]}, "CUDA/11.1.1-iccifort-2020.4.304": {"clusters": ["joltik"]}}, "description": "CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.", "homepage": "https://developer.nvidia.com/cuda-toolkit"}, "CUDAcore": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CUDAcore/11.1.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CUDAcore/11.2.1": {"clusters": ["accelgor", "donphan", "joltik"]}, "CUDAcore/11.0.2": {"clusters": ["joltik"]}}, "description": "CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.", "homepage": "https://developer.nvidia.com/cuda-toolkit"}, "cuDNN": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"cuDNN/8.0.4.30-CUDA-11.1.1": {"clusters": ["accelgor", "joltik", "skitty"]}, "cuDNN/8.2.1.32-CUDA-11.3.1": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "cuDNN/8.2.2.26-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"]}, "cuDNN/8.4.1.50-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "cuDNN/8.9.2.26-CUDA-12.1.1": {"clusters": ["accelgor", "donphan", "joltik"]}}, "description": "The NVIDIA CUDA Deep Neural Network library (cuDNN) isa GPU-accelerated library of primitives for deep neural networks.", "homepage": "https://developer.nvidia.com/cudnn"}, "Cufflinks": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cufflinks/20190706-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Cufflinks/20190706-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Transcript assembly, differential expression, and differential regulation for RNA-Seq", "homepage": "http://cole-trapnell-lab.github.io/cufflinks/"}, "CUnit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CUnit/2.1-3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Automated testing framework for C.", "homepage": "https://sourceforge.net/projects/cunit/"}, "cURL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cURL/7.66.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cURL/7.69.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cURL/7.72.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cURL/7.76.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cURL/7.78.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cURL/7.83.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cURL/7.86.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cURL/8.0.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cURL/8.3.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "cURL/7.63.0-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.", "homepage": "http://curl.haxx.se"}, "cutadapt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cutadapt/3.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "cutadapt-3.5, dnaio-0.7.0, xopen-1.4.0"}, "cutadapt/4.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cutadapt-4.2, dnaio-0.10.0, xopen-1.7.0"}, "cutadapt/1.18-GCC-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bz2file-0.98, cutadapt-1.18, xopen-0.8.4"}, "cutadapt/1.18-GCCcore-8.3.0-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bz2file-0.98, cutadapt-1.18, xopen-0.8.4"}, "cutadapt/1.18-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bz2file-0.98, cutadapt-1.18, xopen-0.5.1"}, "cutadapt/2.7-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cutadapt-2.7, dnaio-0.4.1, xopen-0.8.4"}, "cutadapt/2.10-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cutadapt-2.10, dnaio-0.4.2, xopen-0.8.4"}, "cutadapt/3.4-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cutadapt-3.4, dnaio-0.5.2, xopen-1.1.0"}}, "description": "Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.", "homepage": "https://opensource.scilifelab.se/projects/cutadapt/"}, "cuteSV": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cuteSV/2.0.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cigar-0.1.3, cuteSV-2.0.3"}}, "description": "cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection.", "homepage": "https://github.com/tjiangHIT/cuteSV"}, "CVXOPT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CVXOPT/1.3.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "CVXOPT/1.2.4-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CVXOPT is a free software package for convex optimization based on the Python programming language. Its main purpose is to make the development of software for convex optimization applications straightforward by building on Python's extensive standard library and on the strengths of Python as a high-level programming language.", "homepage": "https://cvxopt.org"}, "cython-blis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cython-blis/0.9.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Fast BLAS-like operations from Python and Cython, without the tears.Provides the Blis linear algebra routines as a self-contained Python C-extension.", "homepage": "https://github.com/explosion/cython-blis"}, "Cython": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Cython/0.29.22-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Cython/0.29.33-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Cython/3.0.7-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Cython/3.0.8-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Cython is an optimising static compiler for both the Python programminglanguage and the extended Cython programming language (based on Pyrex).", "homepage": "https://cython.org/"}, "Dakota": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Dakota/6.16.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ. Broadly, the Dakota software's advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models.", "homepage": "https://dakota.sandia.gov/"}, "DALI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DALI/2.1.2-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem", "homepage": "https://github.com/vibscc/DALI"}, "DAS_Tool": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DAS_Tool/1.1.1-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "DAS_Tool-1.1.1"}}, "description": "DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.", "homepage": "https://github.com/cmks/DAS_Tool"}, "dask": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dask/2021.2.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "cloudpickle-1.6.0, dask-2021.2.0, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.2.0, docrep-0.3.2, fsspec-0.8.7, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.1.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0"}, "dask/2021.9.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "cloudpickle-2.0.0, dask-2021.9.1, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.9.1, docrep-0.3.2, fsspec-2021.10.1, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.2.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0"}, "dask/2022.1.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cloudpickle-2.0.0, dask-2022.1.0, dask-jobqueue-0.7.3, dask-mpi-2021.11.0, distributed-2022.1.0, docrep-0.3.2, HeapDict-1.0.1, locket-0.2.1, partd-1.2.0, tblib-1.7.0, toolz-0.11.2, zict-2.0.0"}, "dask/2022.10.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cloudpickle-2.2.0, dask-2022.10.0, dask-jobqueue-0.8.1, dask-mpi-2022.4.0, distributed-2022.10.0, docrep-0.3.2, fsspec-2021.7.0, HeapDict-1.0.1, locket-1.0.0, partd-1.3.0, tblib-1.7.0, toolz-0.12.0, zict-2.2.0"}, "dask/2023.12.1-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "dask-2023.12.1, dask-jobqueue-0.8.2, dask-mpi-2022.4.0, distributed-2023.12.1, docrep-0.3.2, HeapDict-1.0.1, locket-1.0.0, partd-1.4.1, tblib-3.0.0, toolz-0.12.0, zict-3.0.0"}, "dask/2.8.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cloudpickle-1.2.2, dask-2.8.0, dask-jobqueue-0.7.0, dask-mpi-2.0.0, distributed-2.8.0, docrep-0.2.7, fsspec-0.6.0, HeapDict-1.0.1, locket-0.2.0, msgpack-0.6.2, partd-1.0.0, tblib-1.5.0, toolz-0.10.0, zict-1.0.0"}, "dask/2.8.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cloudpickle-1.2.2, dask-2.8.0, dask-jobqueue-0.7.0, dask-mpi-2.0.0, distributed-2.8.0, docrep-0.2.7, fsspec-0.6.0, HeapDict-1.0.1, locket-0.2.0, msgpack-0.6.2, partd-1.0.0, tblib-1.5.0, toolz-0.10.0, zict-1.0.0"}, "dask/2.18.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cloudpickle-1.4.1, contextvars-2.4, dask-2.18.1, dask-jobqueue-0.7.1, dask-mpi-2.0.0, distributed-2.18.0, docrep-0.2.7, fsspec-0.7.4, HeapDict-1.0.1, immutables-0.14, locket-0.2.0, msgpack-1.0.0, partd-1.1.0, tblib-1.6.0, toolz-0.10.0, zict-2.0.0"}, "dask/2.18.1-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cloudpickle-1.4.1, contextvars-2.4, dask-2.18.1, dask-jobqueue-0.7.1, dask-mpi-2.0.0, distributed-2.18.0, docrep-0.2.7, fsspec-0.7.4, HeapDict-1.0.1, immutables-0.14, locket-0.2.0, msgpack-1.0.0, partd-1.1.0, tblib-1.6.0, toolz-0.10.0, zict-2.0.0"}, "dask/2021.2.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cloudpickle-1.6.0, dask-2021.2.0, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.2.0, docrep-0.3.2, fsspec-0.8.7, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.1.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0"}, "dask/2021.2.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cloudpickle-1.6.0, dask-2021.2.0, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.2.0, docrep-0.3.2, fsspec-0.8.7, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.1.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0"}}, "description": "Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love.", "homepage": "https://dask.org/"}, "DB": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DB/18.1.32-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DB/18.1.32-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DB/18.1.40-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DB/18.1.40-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DB/18.1.40-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DB/18.1.40-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DB/18.1.40-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DB/18.1.32-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.", "homepage": "https://www.oracle.com/technetwork/products/berkeleydb"}, "DB_File": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DB_File/1.857-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DB_File/1.858-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DB_File/1.835-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "DB_File/1.855-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Perl5 access to Berkeley DB version 1.x.", "homepage": "https://perldoc.perl.org/DB_File.html"}, "DBD-mysql": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DBD-mysql/4.050-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "DBD-mysql/4.050-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Perl binding for MySQL", "homepage": "https://metacpan.org/pod/distribution/DBD-mysql/lib/DBD/mysql.pm"}, "DBG2OLC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DBG2OLC/20200724-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies", "homepage": "https://github.com/yechengxi/DBG2OLC"}, "dbus-glib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dbus-glib/0.112-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "dbus-glib/0.112-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "D-Bus is a message bus system, a simple way for applications to talk to one another.", "homepage": "https://dbus.freedesktop.org/doc/dbus-glib"}, "DBus": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DBus/1.13.12-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "DBus/1.13.18-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DBus/1.13.18-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DBus/1.13.18-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DBus/1.14.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DBus/1.15.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DBus/1.15.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DBus/1.13.12-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a \"single instance\" application or daemon, and to launch applications and daemons on demand when their services are needed.", "homepage": "https://dbus.freedesktop.org/"}, "dclone": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dclone/2.3-0-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Low level functions for implementing maximum likelihood estimating procedures for complex models using data cloning and Bayesian Markov chain Monte Carlo methods", "homepage": "https://cran.r-project.org/web/packages/dclone"}, "deepdiff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"deepdiff/5.8.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "deepdiff-5.8.1, jsonpickle-2.2.0, ordered-set-4.1.0"}, "deepdiff/6.7.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "deepdiff-6.7.1, jsonpickle-3.0.2, ordered-set-4.1.0"}, "deepdiff/6.7.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "deepdiff-6.7.1, jsonpickle-3.0.2, ordered-set-4.1.0"}}, "description": "DeepDiff: Deep Difference of dictionaries, iterables and almost any other object recursively.", "homepage": "https://zepworks.com/deepdiff/current/"}, "DeepLoc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DeepLoc/2.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bio-1.6.2, DeepLoc-2.0, gprofiler-official-1.0.0"}}, "description": "DeepLoc 2.0 predicts the subcellular localization(s) of eukaryotic proteins", "homepage": "https://services.healthtech.dtu.dk/services/DeepLoc-2.0"}, "deepTools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"deepTools/3.5.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "deepTools-3.5.1, deeptoolsintervals-0.1.9, numpydoc-1.2, py2bit-0.3.0"}, "deepTools/3.3.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "deepTools-3.3.1, deeptoolsintervals-0.1.9, numpydoc-0.9.1, py2bit-0.3.0, pyBigWig-0.3.17"}}, "description": "deepTools is a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq.", "homepage": "https://deeptools.readthedocs.io/"}, "DendroPy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DendroPy/4.5.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "DendroPy/4.5.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DendroPy/4.6.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DendroPy/4.4.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "DendroPy/4.4.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "DendroPy/4.5.2-GCCcore-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "DendroPy/4.5.2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.", "homepage": "https://pypi.python.org/pypi/DendroPy/"}, "DensPart": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DensPart/20220603-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Atoms-in-molecules density partitioning schemes based on stockholder recipe", "homepage": "https://github.com/theochem/denspart"}, "Deprecated": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Deprecated/1.2.13-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Deprecated-1.2.13, wrapt-1.15.0"}, "Deprecated/1.2.13-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Deprecated-1.2.13, wrapt-1.12.1"}}, "description": "If you need to mark a function or a method as deprecated, you can use the @deprecated decorator.", "homepage": "https://github.com/tantale/deprecated"}, "detectron2": {"clusters": ["accelgor", "joltik"], "versions": {"detectron2/0.6-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "black-21.4b2, CacheControl-0.12.11, cloudpickle-2.0.0, detectron2-0.6, editables-0.3, fvcore-0.1.5.post20220414, hatch-vcs-0.2.0, hatchling-0.23.0, iopath-0.1.9, mypy-extensions-0.4.3, packaging-21.3, pathspec-0.9.0, platformdirs-2.5.2, pluggy-1.0.0, poetry-1.1.13, poetry-core-1.0.8, portalocker-2.4.0, pytest-7.1.2, setuptools-scm-6.4.2, termcolor-1.1.0, tomli-2.0.1"}}, "description": "Detectron2 is a platform for object detection, segmentation and other visual recognition tasks.", "homepage": "https://github.com/facebookresearch/detectron2"}, "DETONATE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DETONATE/1.11-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL. Both packages are mainly intended to be used to evaluate de novo transcriptome assemblies, although REF-EVAL can be used to compare sets of any kinds of genomic sequences.", "homepage": "http://deweylab.biostat.wisc.edu/detonate/"}, "devbio-napari": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"devbio-napari/0.10.1-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "apoc-0.12.0, comm-0.2.0, czifile-2019.7.2, debugpy-1.8.0, devbio-napari-0.10.1, funcsigs-1.0.2, imageio-ffmpeg-0.4.9, ipycanvas-0.13.1, ipyevents-2.0.2, ipykernel-6.27.1, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-5.5.0, jupytext-1.15.2, loguru-0.7.2, mdit_py_plugins-0.4.0, napari-accelerated-pixel-and-object-classification-0.14.1, napari-assistant-0.4.7, napari-blob-detection-0.0.2, napari-brightness-contrast-0.1.8, napari-clusters-plotter-0.7.3, napari-crop-0.1.9, napari-curtain-0.1.1, napari-czifile2-0.2.7, napari-folder-browser-0.1.3, napari-layer-details-display-0.1.5, napari-mouse-controls-0.1.3, napari-plot-profile-0.2.2, napari-plugin-search-0.1.4, napari-roi-0.1.8, napari-segment-blobs-and-things-with-membranes-0.3.7, napari-simpleitk-image-processing-0.4.5, napari-skimage-regionprops-0.10.1, napari-tabu-0.1.5, napari-time-slicer-0.5.0, napari-tools-menu-0.1.19, napari-workflow-inspector-0.2.2, napari-workflow-optimizer-0.1.4, napari-workflows-0.2.10, napari_animation-0.0.7, napari_pyclesperanto_assistant-0.22.1, napari_pystackreg-0.1.4, platformdirs-2.6.2, PlatyMatch-0.0.3, pyclesperanto_prototype-0.24.1, pyperclip-1.8.2, pystackreg-0.2.7, RedLionfish-0.9, reikna-0.8.0, stackview-0.7.2, the-segmentation-game-0.2.0, traitlets-5.14.0, transforms3d-0.4.1"}, "devbio-napari/0.10.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "apoc-0.12.0, comm-0.2.0, czifile-2019.7.2, debugpy-1.8.0, devbio-napari-0.10.1, funcsigs-1.0.2, imageio-ffmpeg-0.4.9, ipycanvas-0.13.1, ipyevents-2.0.2, ipykernel-6.27.1, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-5.5.0, jupytext-1.15.2, loguru-0.7.2, mdit_py_plugins-0.4.0, napari-accelerated-pixel-and-object-classification-0.14.1, napari-assistant-0.4.7, napari-blob-detection-0.0.2, napari-brightness-contrast-0.1.8, napari-clusters-plotter-0.7.3, napari-crop-0.1.9, napari-curtain-0.1.1, napari-czifile2-0.2.7, napari-folder-browser-0.1.3, napari-layer-details-display-0.1.5, napari-mouse-controls-0.1.3, napari-plot-profile-0.2.2, napari-plugin-search-0.1.4, napari-roi-0.1.8, napari-segment-blobs-and-things-with-membranes-0.3.7, napari-simpleitk-image-processing-0.4.5, napari-skimage-regionprops-0.10.1, napari-tabu-0.1.5, napari-time-slicer-0.5.0, napari-tools-menu-0.1.19, napari-workflow-inspector-0.2.2, napari-workflow-optimizer-0.1.4, napari-workflows-0.2.10, napari_animation-0.0.7, napari_pyclesperanto_assistant-0.22.1, napari_pystackreg-0.1.4, platformdirs-2.6.2, PlatyMatch-0.0.3, pyclesperanto_prototype-0.24.1, pyperclip-1.8.2, pystackreg-0.2.7, RedLionfish-0.9, reikna-0.8.0, stackview-0.7.2, the-segmentation-game-0.2.0, traitlets-5.14.0, transforms3d-0.4.1"}}, "description": "A bundle of napari plugins useful for 3D+t image processing and analysis for studying developmental biology.", "homepage": "https://github.com/haesleinhuepf/devbio-napari"}, "DIA-NN": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"DIA-NN/1.8.1": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "DIA-NN - a universal software for data-independent acquisition (DIA) proteomics data processing", "homepage": "https://github.com/vdemichev/DiaNN"}, "DIALOGUE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DIALOGUE/1.0-20230228-foss-2021b-R-4.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.", "homepage": "https://github.com/livnatje/DIALOGUE"}, "DIAMOND": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DIAMOND/2.0.7-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DIAMOND/2.0.13-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DIAMOND/2.1.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DIAMOND/2.1.8-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DIAMOND/2.1.8-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DIAMOND/0.9.30-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "DIAMOND/0.9.30-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "DIAMOND/2.0.6-GCC-10.2.0": {"clusters": ["doduo"]}, "DIAMOND/2.0.11-GCC-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Accelerated BLAST compatible local sequence aligner", "homepage": "https://github.com/bbuchfink/diamond"}, "DiCE-ML": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DiCE-ML/0.9-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Diverse Counterfactual Explanations (DiCE) for ML", "homepage": "https://interpret.ml/DiCE"}, "Dice": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Dice/20240101-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Dice/20221025-foss-2022a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Dice contains code for performing SHCI, VMC, GFMC, DMC, FCIQMC, stochastic MRCIand SC-NEVPT2, and AFQMC calculations with a focus on ab initio systems.", "homepage": "https://github.com/sanshar/Dice"}, "dicom2nifti": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dicom2nifti/2.3.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "dicom2nifti/2.3.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python library for converting dicom files to nifti", "homepage": "https://github.com/icometrix/dicom2nifti"}, "dill": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dill/0.3.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "dill/0.3.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "dill/0.3.6-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "dill/0.3.7-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "dill/0.3.7-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "dill/0.3.3-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "skitty"]}, "dill/0.3.3-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy.", "homepage": "https://pypi.org/project/dill/"}, "dm-haiku": {"clusters": ["accelgor", "joltik"], "versions": {"dm-haiku/0.0.9-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "dm-haiku-0.0.9, jmp-0.0.4"}}, "description": "Haiku is a simple neural network library for JAX developed by some of the authors of Sonnet, a neuralnetwork library for TensorFlow.", "homepage": "https://github.com/deepmind/dm-haiku"}, "dm-tree": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dm-tree/0.1.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "dm-tree/0.1.6-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "dm-tree/0.1.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "dm-tree/0.1.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "dm-tree provides tree, a library for working with nested data structures. In a way,tree generalizes the builtin map function which only supports flat sequences, andallows to apply a function to each \"leaf\" preserving the overall structure.", "homepage": "https://github.com/deepmind/tree"}, "dorado": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"dorado/0.1.1-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"]}, "dorado/0.3.0-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"]}, "dorado/0.3.1-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"]}, "dorado/0.5.1-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}}, "description": "Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.", "homepage": "https://github.com/nanoporetech/dorado"}, "double-conversion": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"double-conversion/3.1.4-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "double-conversion/3.1.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "double-conversion/3.1.5-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "double-conversion/3.1.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "double-conversion/3.2.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "double-conversion/3.2.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "double-conversion/3.3.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "double-conversion/3.1.5-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.", "homepage": "https://github.com/google/double-conversion"}, "DoubletFinder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DoubletFinder/2.0.3-20230131-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DoubletFinder/2.0.3-20230819-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "DoubletFinder/2.0.3-foss-2020a-R-4.0.0": {"clusters": ["donphan", "joltik"]}}, "description": "R package for detecting doublets in single-cell RNA sequencing data", "homepage": "https://github.com/chris-mcginnis-ucsf/DoubletFinder"}, "Doxygen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Doxygen/1.8.16-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Doxygen/1.8.17-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Doxygen/1.8.20-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Doxygen/1.9.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Doxygen/1.9.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Doxygen/1.9.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Doxygen/1.9.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Doxygen/1.9.7-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.", "homepage": "https://www.doxygen.org"}, "DRAGMAP": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"DRAGMAP/1.3.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Dragmap is the Dragen mapper/aligner Open Source Software.", "homepage": "https://github.com/Illumina/DRAGMAP"}, "drmaa-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"drmaa-python/0.7.9-GCCcore-12.2.0-slurm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Distributed Resource Management Application API (DRMAA) bindings for Python.", "homepage": "https://github.com/pygridtools/drmaa-python"}, "DualSPHysics": {"clusters": ["accelgor", "joltik"], "versions": {"DualSPHysics/5.0.175-GCC-11.2.0-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"]}}, "description": "DualSPHysics is based on the Smoothed Particle Hydrodynamics model named SPHysics. The code is developed to study free-surface flow phenomena where Eulerian methods can be difficult to apply, such as waves or impact of dam-breaks on off-shore structures. DualSPHysics is a set of C++, CUDA and Java codes designed to deal with real-life engineering problems.", "homepage": "https://dual.sphysics.org/"}, "DUBStepR": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"DUBStepR/1.2.0-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selectionalgorithm for cell type identification in single-cell RNA-sequencing data.", "homepage": "https://github.com/prabhakarlab/DUBStepR"}, "duplex-tools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"duplex-tools/0.3.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "duplex-tools-0.3.1, iso8601-1.1.0, lib-pod5-0.1.5, mappy-2.24, natsort-8.3.1, pod5-0.1.5, pyfastx-0.9.1, vbz-h5py-plugin-1.0.1"}, "duplex-tools/0.3.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "duplex-tools-0.3.3, iso8601-1.1.0, mappy-2.24, natsort-8.4.0, pyfastx-1.1.0, vbz-h5py-plugin-1.0.1"}}, "description": "Duplex Tools contains a set of utilities for dealing with Duplex sequencing data. Tools are provided to identify and prepare duplex pairs for basecalling by Dorado (recommended) and Guppy, and for recovering simplex basecalls from incorrectly concatenated pairs.", "homepage": "https://github.com/nanoporetech/duplex-tools"}, "DyMat": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"DyMat/0.7-foss-2021b-2020-12-12": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Read and process result files from Dymola and OpenModelica with Python.", "homepage": "https://www.j-raedler.de/projects/DyMat"}, "dynesty": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"dynesty/2.1.3-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "coverage-6.5.0, coveralls-3.3.1, dynesty-2.1.3, pytest-cov-4.1.0"}}, "description": "dynesty is a Pure Python, MIT-licensed Dynamic Nested Sampling packagefor estimating Bayesian posteriors and evidences.", "homepage": "https://dynesty.readthedocs.io/"}, "EasyBuild": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EasyBuild/4.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.3.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.3.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.3.4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.4.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.4.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.4.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.5.5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.6.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.6.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.6.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.7.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.7.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.8.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.8.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "EasyBuild/4.9.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.", "homepage": "https://easybuilders.github.io/easybuild"}, "ebGSEA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ebGSEA/0.1.0-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ebGSEA-0.1.0, kpmt-0.1.0"}}, "description": "Gene Set Enrichment Analysis is one of the most common tasks in the analysis of omic data, and is critical for biological interpretation. In the context of Epigenome Wide Association Studies (EWAS), which typically rank individual cytosines according to the level of differential methylation, enrichment analysis of biological pathways is challenging due to differences in CpG/probe density between genes.", "homepage": "https://github.com/aet21/ebGSEA"}, "ecCodes": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ecCodes/2.22.1-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ecCodes/2.24.2-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ecCodes/2.15.0-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ecCodes is a package developed by ECMWF which provides an application programming interface and a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2, WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding).", "homepage": "https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home"}, "EDirect": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EDirect/20.5.20231006-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Entrez Direct (EDirect) provides access to the NCBI's suite ofinterconnected databases from a Unix terminal window. Search terms are enteredas command-line arguments. Individual operations are connected with Unix pipesto construct multi-step queries. Selected records can then be retrieved in avariety of formats.", "homepage": "https://www.ncbi.nlm.nih.gov/books/NBK25501/"}, "edlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"edlib/1.3.9-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "edlib/1.3.9-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "edlib/1.3.9-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "edlib/1.3.8.post1-GCC-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "edlib/1.3.8.post1-GCC-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "edlib/1.3.8.post1-iccifort-2019.5.281-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}, "edlib/1.3.8.post2-iccifort-2020.1.217-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik"]}, "edlib/1.3.9-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.", "homepage": "https://martinsos.github.io/edlib"}, "eggnog-mapper": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"eggnog-mapper/2.1.10-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "eggnog-mapper/2.1.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "EggNOG-mapper is a tool for fast functional annotation of novelsequences. It uses precomputed orthologous groups and phylogenies from theeggNOG database (http://eggnog5.embl.de) to transfer functional information fromfine-grained orthologs only. Common uses of eggNOG-mapper include the annotationof novel genomes, transcriptomes or even metagenomic gene catalogs.", "homepage": "https://github.com/eggnogdb/eggnog-mapper"}, "Eigen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Eigen/3.3.7-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.3.7": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.3.8-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.3.9-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.3.9-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.4.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.4.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.4.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.4.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.4.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Eigen/3.3.9-GCCcore-10.2.0": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}}, "description": "Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.", "homepage": "https://eigen.tuxfamily.org"}, "einops": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"einops/0.4.1-GCCcore-10.3.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "einops/0.4.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Flexible and powerful tensor operations for readable and reliable code.Supports numpy, pytorch, tensorflow, jax, and others.", "homepage": "https://einops.rocks/"}, "elfutils": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"elfutils/0.185-GCCcore-8.3.0": {"clusters": ["accelgor", "joltik"]}, "elfutils/0.185-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "elfutils/0.185-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "elfutils/0.187-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "elfutils/0.183-GCCcore-10.2.0": {"clusters": ["donphan", "gallade", "joltik"]}}, "description": "The elfutils project provides libraries and tools for ELF files and DWARF data.", "homepage": "https://elfutils.org/"}, "ELPA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ELPA/2021.05.001-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ELPA/2021.05.001-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ELPA/2019.11.001-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ELPA/2019.11.001-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ELPA/2020.11.001-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "ELPA/2021.05.001-intel-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Eigenvalue SoLvers for Petaflop-Applications .", "homepage": "https://elpa.rzg.mpg.de"}, "EMBOSS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"EMBOSS/6.6.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "EMBOSS/6.6.0-GCC-8.3.0-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "EMBOSS is 'The European Molecular Biology Open Software Suite'. EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community.", "homepage": "https://emboss.sourceforge.net/"}, "enchant-2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"enchant-2/2.3.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Enchant aims to provide a simple but comprehensive abstraction for dealingwith different spell checking libraries in a consistent way. A client, suchas a text editor or word processor, need not know anything about a specificspell-checker, and since all back-ends are plugins, new spell-checkers canbe added without needing any change to the program using Enchant.", "homepage": "https://github.com/AbiWord/enchant"}, "epiScanpy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"epiScanpy/0.4.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bamnostic-1.1.8, dunamai-1.16.0, episcanpy-0.4.0, get_version-3.5.4, kneed-0.8.2, legacy-api-wrap-1.2, pyliftover-0.4, python-louvain-0.16"}, "epiScanpy/0.3.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bamnostic-1.1.7, episcanpy-0.3.1, get_version-3.2, legacy-api-wrap-1.2, pyliftover-0.4, python-louvain-0.15"}}, "description": "EpiScanpy is a toolkit to analyse single-cell open chromatin(scATAC-seq) and single-cell DNA methylation (for example scBS-seq)data. EpiScanpy is the epigenomic extension of the very popular scRNA-seqanalysis tool Scanpy (Genome Biology, 2018) [Wolf18].", "homepage": "https://github.com/colomemaria/episcanpy"}, "EpiSCORE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EpiSCORE/0.9.5-20220621-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles", "homepage": "https://github.com/aet21/EpiSCORE"}, "ESM-2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ESM-2/2.0.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ESM-2/2.0.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "antlr4-python3-runtime-4.9.3, fair-esm-2.0.0, omegaconf-2.3.0"}}, "description": "ESM-2 outperforms all tested single-sequence protein language models across a range of structure prediction tasks. ESMFold harnesses the ESM-2 language model to generate accurate structure predictions end to end directly from the sequence of a protein.", "homepage": "https://github.com/facebookresearch/esm"}, "ESMF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ESMF/8.2.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ESMF/8.0.0-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ESMF/8.0.1-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ESMF/8.0.1-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "ESMF/8.1.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications.", "homepage": "https://www.earthsystemcog.org/projects/esmf/"}, "ETE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ETE/3.1.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ETE/3.1.3-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A Python framework for the analysis and visualization of trees", "homepage": "http://etetoolkit.org"}, "EUKulele": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"EUKulele/2.0.6-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "dill-0.3.6, EUKulele-2.0.6, joblib-1.3.1, latexcodec-2.0.1, multiprocess-0.70.14, oset-0.1.3, pybtex-0.24.0, pybtex-docutils-1.0.3, pytest-cov-4.1.0, python-coveralls-2.9.3, sphinxcontrib-bibtex-1.0.0"}, "EUKulele/1.0.4-foss-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "apipkg-1.5, coverage-5.4, dill-0.3.3, EUKulele-1.0.4, execnet-1.8.0, latexcodec-2.0.1, multiprocess-0.70.11.1, oset-0.1.3, pybtex-0.24.0, pybtex-docutils-1.0.0, pytest-cov-2.11.1, pytest-forked-1.3.0, pytest-xdist-2.2.1, python-coveralls-2.9.3, sphinxcontrib-bibtex-1.0.0"}}, "description": "EUKulele is a Python program for taxonomic annotation of microbes in metatranscriptomic and metagenomic samples, with special emphasis on eukaryote discovery.", "homepage": "https://github.com/AlexanderLabWHOI/EUKulele"}, "exiv2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"exiv2/0.27.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "exiv2/0.27.4-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Exiv2 is a Cross-platform C++ library and a command line utility to manage image metadata.", "homepage": "https://exiv2.org"}, "Exonerate": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Exonerate/2.4.0-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Exonerate/2.4.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Exonerate/2.4.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Exonerate/2.4.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}, "Exonerate/2.4.0-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics.", "homepage": "https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate"}, "expat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"expat/2.2.7-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.2.9-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.2.9-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.2.9-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.4.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.4.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.4.9-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.5.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.5.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expat/2.2.6-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags)", "homepage": "https://libexpat.github.io"}, "expecttest": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"expecttest/0.1.3-GCCcore-10.2.0": {"clusters": ["accelgor"]}, "expecttest/0.1.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expecttest/0.1.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expecttest/0.1.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expecttest/0.1.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "expecttest/0.1.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "This library implements expect tests (also known as \"golden\" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.", "homepage": "https://github.com/ezyang/expecttest"}, "ExtremeLy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ExtremeLy/2.3.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "evt-0.0.2, ExtremeLy-2.3.0, seaborn-0.13.2"}}, "description": "A python package for Extreme Value Analysis.", "homepage": "https://github.com/SURYA-LAMICHANEY/ExtremeLy"}, "Faiss": {"clusters": ["accelgor", "joltik"], "versions": {"Faiss/1.7.2-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}}, "description": "Faiss is a library for efficient similarity search and clustering of dense vectors.", "homepage": "https://github.com/facebookresearch/faiss"}, "fasta-reader": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fasta-reader/3.0.2-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "fasta-reader-3.0.2"}}, "description": "FASTA file reader", "homepage": "https://github.com/EBI-Metagenomics/fasta-reader-py"}, "FASTA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FASTA/36.3.8i-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The FASTA programs find regions of local or global (new) similarity between protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence.", "homepage": "https://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml"}, "fastahack": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fastahack/1.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "fastahack/1.0.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Utilities for indexing and sequence extraction from FASTA files.", "homepage": "https://github.com/ekg/fastahack"}, "fastai": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fastai/2.7.10-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "fastai-2.7.10, fastcore-1.5.27, fastdownload-0.0.7, fastprogress-1.0.3"}}, "description": "The fastai deep learning library.", "homepage": "https://www.fast.ai/"}, "FastANI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FastANI/1.33-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FastANI/1.33-intel-compilers-2021.4.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FastANI/1.34-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FastANI/1.3-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FastANI/1.31-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FastANI/1.33-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}, "FastANI/1.33-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies.", "homepage": "https://github.com/ParBLiSS/FastANI"}, "Fastaq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Fastaq/3.17.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python3 scripts to manipulate FASTA and FASTQ files.", "homepage": "https://github.com/sanger-pathogens/Fastaq"}, "FastME": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FastME/2.1.6.3-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FastME/2.1.6.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FastME/2.1.6.1-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "FastME/2.1.6.1-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "FastME: a comprehensive, accurate and fast distance-based phylogeny inference program.", "homepage": "https://www.atgc-montpellier.fr/fastme/"}, "fastp": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"fastp/0.23.2-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "fastp/0.20.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "fastp/0.20.0-iccifort-2019.5.281": {"clusters": ["doduo"]}, "fastp/0.20.1-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.", "homepage": "https://github.com/OpenGene/fastp"}, "FastQ_Screen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FastQ_Screen/0.14.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.", "homepage": "http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/"}, "FastQC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FastQC/0.11.9-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FastQC is a quality control application for high throughputsequence data. It reads in sequence data in a variety of formats and can eitherprovide an interactive application to review the results of several differentQC checks, or create an HTML based report which can be integrated into apipeline.", "homepage": "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/"}, "FastTree": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FastTree/2.1.11-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FastTree/2.1.11-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FastTree/2.1.11-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FastTree/2.1.11-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FastTree/2.1.11-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FastTree/2.1.11-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory.", "homepage": "http://www.microbesonline.org/fasttree/"}, "FASTX-Toolkit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FASTX-Toolkit/0.0.14-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "PerlIO::gzip-0.20"}, "FASTX-Toolkit/0.0.14-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.", "homepage": "http://hannonlab.cshl.edu/fastx_toolkit/"}, "FDS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FDS/6.7.7-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FDS/6.7.9-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FDS/6.8.0-intel-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FDS/6.7.4-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FDS/6.7.5-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FDS/6.7.6-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "FDS/6.7.5-intel-2020b": {"clusters": ["donphan", "joltik"]}}, "description": "Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires.", "homepage": "https://pages.nist.gov/fds-smv/"}, "FFAVES": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FFAVES/2022.11.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "dill-0.3.8, FFAVES-2022.11.1, multiprocess-0.70.16"}}, "description": "Functional Feature Amplification Via Entropy Sorting (FFAVES).Use FFAVES to amplify the signal of groups of co-regulating genes in an unsupervised, multivariate manner.By amplifying the signal of genes with correlated expression, while filtering out genes that are randomly expressed,we can identify a subset of genes more predictive of different cell types.The output of FFAVES can then be used in our second algorithm, entropy sort feature weighting (ESFW),to create a ranked list of genes that are most likely to pertain to distinct sub-populations of cells in an scRNA-seq dataset.", "homepage": "https://github.com/aradley/FFAVES"}, "FFmpeg": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FFmpeg/4.2.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FFmpeg/4.3.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/4.3.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/4.3.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/4.4.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/5.1.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/6.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFmpeg/4.2.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A complete, cross-platform solution to record, convert and stream audio and video.", "homepage": "https://www.ffmpeg.org/"}, "ffnvcodec": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ffnvcodec/11.1.5.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ffnvcodec/12.0.16.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present(picked up dynamically).", "homepage": "https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git"}, "FFTW.MPI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FFTW.MPI/3.3.10-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW.MPI/3.3.10-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW.MPI/3.3.10-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW.MPI/3.3.10-gompi-2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FFTW is a C subroutine library for computing the discrete Fourier transform (DFT)in one or more dimensions, of arbitrary input size, and of both real and complex data.", "homepage": "https://www.fftw.org"}, "FFTW": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FFTW/3.3.8-gompi-2019b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FFTW/3.3.8-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.8-gompic-2020b": {"clusters": ["accelgor", "joltik"]}, "FFTW/3.3.9-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.10-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.10-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.10-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.10-GCC-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.10-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.8-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FFTW/3.3.8-iimpi-2020b": {"clusters": ["doduo"]}, "FFTW/3.3.8-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FFTW/3.3.8-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FFTW/3.3.8-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "FFTW/3.3.8-iomkl-2020a": {"clusters": ["doduo"]}, "FFTW/3.3.9-intel-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FFTW/3.3.8-intelcuda-2020b": {"clusters": ["joltik"]}}, "description": "FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.", "homepage": "http://www.fftw.org"}, "Fiji": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Fiji/2.9.0-Java-1.8": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Fiji is an image processing package\u2014a 'batteries-included' distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.This release is based on ImageJ-2.1.0 and Fiji-2.1.1", "homepage": "https://fiji.sc"}, "file": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"file/5.41-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "file/5.43-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "file/5.38-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "file/5.38-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "file/5.39-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The file command is 'a file type guesser', that is, a command-line tool that tells you in words what kind of data a file contains.", "homepage": "https://www.darwinsys.com/file/"}, "filevercmp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"filevercmp/20191210-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "filevercmp/20191210-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "filevercmp function as in sort --version-sort.", "homepage": "https://github.com/ekg/filevercmp"}, "finder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"finder/1.1.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "finder is a gene annotator pipeline which automates the process of downloading short reads,aligning them and using the assembled transcripts to generate gene annotations.", "homepage": "https://github.com/sagnikbanerjee15/Finder/"}, "Fiona": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Fiona/1.8.21-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.21, munch-2.5.0"}, "Fiona/1.8.21-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.21, munch-2.5.0"}, "Fiona/1.9.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "click-plugins-1.1.1, cligj-0.7.2, Fiona-1.9.2, munch-2.5.0"}, "Fiona/1.9.5-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "click-plugins-1.1.1, cligj-0.7.2, fiona-1.9.5, munch-4.0.0"}, "Fiona/1.8.16-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "click-plugins-1.1.1, cligj-0.5.0, Fiona-1.8.16, munch-2.5.0"}, "Fiona/1.8.20-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.20, munch-2.5.0"}, "Fiona/1.8.20-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.20, munch-2.5.0"}, "Fiona/1.8.13-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "click-7.1.1, click-plugins-1.1.1, cligj-0.5.0, Fiona-1.8.13, munch-2.5.0"}}, "description": "Fiona is designed to be simple and dependable. It focuses on reading and writing datain standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries,mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data usingmulti-layered GIS formats and zipped virtual file systems and integrates readily with other Python GISpackages such as pyproj, Rtree, and Shapely.", "homepage": "https://github.com/Toblerity/Fiona"}, "FLAC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FLAC/1.3.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FLAC/1.3.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FLAC/1.3.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FLAC/1.3.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FLAC/1.4.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FLAC/1.4.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaningthat audio is compressed in FLAC without any loss in quality.", "homepage": "https://xiph.org/flac/"}, "flair-NLP": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"flair-NLP/0.11.3-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "bpemb-0.3.3, conllu-4.4.2, Deprecated-1.2.13, flair-0.11.3, ftfy-6.1.1, gdown-4.4.0, huggingface_hub-0.7.0, importlib_metadata-3.10.1, Janome-0.4.2, konoha-4.6.5, langdetect-1.0.9, mpld3-0.5.8, overrides-3.1.0, pptree-3.1, segtok-1.5.11, sqlitedict-2.0.0, transformers-4.19.2, Wikipedia-API-0.5.4, wrapt-1.14.1"}, "flair-NLP/0.11.3-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "bpemb-0.3.3, conllu-4.4.2, Deprecated-1.2.13, flair-0.11.3, ftfy-6.1.1, gdown-4.4.0, huggingface_hub-0.7.0, importlib_metadata-3.10.1, Janome-0.4.2, konoha-4.6.5, langdetect-1.0.9, mpld3-0.5.8, overrides-3.1.0, pptree-3.1, segtok-1.5.11, sqlitedict-2.0.0, transformers-4.19.2, Wikipedia-API-0.5.4, wrapt-1.14.1"}}, "description": "A very simple framework for state-of-the-art NLP", "homepage": "https://github.com/flairNLP/flair"}, "FLANN": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FLANN/1.9.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FLANN is a library for performing fast approximate nearest neighbor searches in high dimensional spaces.", "homepage": "https://github.com/mariusmuja/flann/"}, "FLASH": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FLASH/2.2.00-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FLASH/1.2.11-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}, "FLASH/2.2.00-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FLASH (Fast Length Adjustment of SHort reads) is a very fastand accurate software tool to merge paired-end reads from next-generationsequencing experiments. FLASH is designed to merge pairs of reads when theoriginal DNA fragments are shorter than twice the length of reads. Theresulting longer reads can significantly improve genome assemblies. They canalso improve transcriptome assembly when FLASH is used to merge RNA-seq data.", "homepage": "https://ccb.jhu.edu/software/FLASH/"}, "Flask": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Flask/1.1.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cachelib-0.4.1, Flask-1.1.4, Flask-Cors-3.0.10, Flask-Session-0.4.0, itsdangerous-1.1.0, Werkzeug-1.0.1"}, "Flask/2.0.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "asgiref-3.4.1, cachelib-0.6.0, Flask-2.0.2, Flask-Cors-3.0.10, Flask-Session-0.4.0, itsdangerous-2.0.1, Werkzeug-2.0.2"}, "Flask/2.2.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "asgiref-3.5.2, cachelib-0.9.0, Flask-2.2.2, Flask-Cors-3.0.10, Flask-Session-0.4.0, itsdangerous-2.1.2, Werkzeug-2.2.2"}, "Flask/1.1.2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Flask-1.1.2, Flask-Cors-3.0.9, itsdangerous-1.1.0, Werkzeug-1.0.1"}}, "description": "Flask is a lightweight WSGI web application framework. It is designed to makegetting started quick and easy, with the ability to scale up to complexapplications.This module includes the Flask extensions: Flask-Cors", "homepage": "https://www.palletsprojects.com/p/flask/"}, "flatbuffers-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"flatbuffers-python/1.12-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flatbuffers-python/2.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flatbuffers-python/2.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flatbuffers-python/2.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flatbuffers-python/23.1.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flatbuffers-python/23.5.26-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python Flatbuffers runtime library.", "homepage": "https://github.com/google/flatbuffers/"}, "flatbuffers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"flatbuffers/1.12.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flatbuffers/2.0.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flatbuffers/2.0.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flatbuffers/2.0.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "flatbuffers-2.0.7"}, "flatbuffers/23.1.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flatbuffers/23.5.26-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flatbuffers/1.12.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "flatbuffers/1.12.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "FlatBuffers: Memory Efficient Serialization Library", "homepage": "https://github.com/google/flatbuffers/"}, "flex": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"flex/2.6.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.6.4-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.6.4-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.6.4-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.6.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.6.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.6.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.6.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.6.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.6.4-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.6.4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "flex/2.5.39-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "flex/2.6.4-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.", "homepage": "http://flex.sourceforge.net/"}, "FlexiBLAS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FlexiBLAS/3.0.4-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FlexiBLAS/3.0.4-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FlexiBLAS/3.2.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FlexiBLAS/3.2.1-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FlexiBLAS/3.3.1-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FlexiBLAS/3.3.1-GCC-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementationused by a program without recompiling or relinking it.", "homepage": "https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release"}, "flit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"flit/3.9.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "certifi-2023.5.7, charset-normalizer-3.1.0, docutils-0.20.1, flit-3.9.0, flit_scm-1.7.0, idna-3.4, packaging-23.1, requests-2.31.0, setuptools_scm-7.1.0, tomli_w-1.0.0, typing_extensions-4.6.3, urllib3-1.26.16"}, "flit/3.9.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "certifi-2023.7.22, charset-normalizer-3.3.1, docutils-0.20.1, flit-3.9.0, flit_scm-1.7.0, idna-3.4, packaging-23.2, requests-2.31.0, setuptools-scm-8.0.4, tomli_w-1.0.0, typing_extensions-4.8.0, urllib3-2.0.7"}}, "description": "A simple packaging tool for simple packages.", "homepage": "https://github.com/pypa/flit"}, "flowFDA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"flowFDA/0.99-20220602-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "R package for analysing flow cytometry experiments with model based clustering, functional principal component analysis", "homepage": "https://github.com/FMKerckhof/flowFDA"}, "FLUENT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FLUENT/2021R2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FLUENT/2023R1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FLUENT/2019R3": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FLUENT/2022R1": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ANSYS FLUENT software contains the broad physical modeling capabilities neededto model flow, turbulence, heat transfer, and reactions for industrial applications ranging fromair flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms,from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants.", "homepage": "https://www.ansys.com/products/fluids/ansys-fluent"}, "Flye": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Flye/2.9-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik"]}, "Flye/2.9.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Flye/2.6-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Flye/2.7-intel-2019b-Python-3.7.4": {"clusters": ["doduo"]}, "Flye/2.8.1-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Flye/2.8.3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}, "Flye/2.8.3-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "joltik"]}, "Flye/2.9-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies.", "homepage": "https://github.com/fenderglass/Flye"}, "fmt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fmt/7.1.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "fmt/8.1.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "fmt/10.1.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "fmt (formerly cppformat) is an open-source formatting library.", "homepage": "http://fmtlib.net/"}, "fontconfig": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fontconfig/2.13.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "fontconfig/2.13.92-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "fontconfig/2.13.92-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "fontconfig/2.13.93-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "fontconfig/2.13.94-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "fontconfig/2.14.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "fontconfig/2.14.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "fontconfig/2.14.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "fontconfig/2.13.1-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Fontconfig is a library designed to provide system-wide font configuration, customization and application access.", "homepage": "http://www.freedesktop.org/software/fontconfig"}, "foss": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"foss/2019b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "foss/2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "foss/2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "foss/2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "foss/2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "foss/2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "foss/2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "foss/2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "foss/2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.", "homepage": "https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain"}, "fosscuda": {"clusters": ["accelgor", "joltik"], "versions": {"fosscuda/2020b": {"clusters": ["accelgor", "joltik"]}}, "description": "GCC based compiler toolchain __with CUDA support__, and including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.", "homepage": "(none)"}, "FragGeneScan": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FragGeneScan/1.31-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FragGeneScan/1.31-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FragGeneScan/1.31-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FragGeneScan is an application for finding (fragmented) genes in short reads.", "homepage": "https://omics.informatics.indiana.edu/FragGeneScan/"}, "FreeBarcodes": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"FreeBarcodes/3.0.a5-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "dill-0.3.4, FreeBarcodes-3.0.a5, multiprocess-0.70.12.2, pathos-0.2.8, pox-0.3.0, ppft-1.6.6.4"}}, "description": "A package for the generation and decoding of FREE divergence error-correcting DNA barcodes", "homepage": "https://github.com/hawkjo/freebarcodes"}, "freeglut": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"freeglut/3.2.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "freeglut/3.2.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "freeglut/3.2.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "freeglut/3.2.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "freeglut/3.2.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "freeglut/3.2.1-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.", "homepage": "http://freeglut.sourceforge.net/"}, "FreeImage": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FreeImage/3.18.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FreeImage is an Open Source library project for developers who would like to support popular graphicsimage formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy touse, fast, multithreading safe.", "homepage": "http://freeimage.sourceforge.net"}, "FreeSurfer": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"FreeSurfer/7.3.2-centos8_x86_64": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FreeSurfer/7.2.0-centos8_x86_64": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.", "homepage": "https://surfer.nmr.mgh.harvard.edu/"}, "freetype": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"freetype/2.10.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "freetype/2.10.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "freetype/2.10.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "freetype/2.10.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "freetype/2.11.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "freetype/2.12.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "freetype/2.12.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "freetype/2.13.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "freetype/2.13.2-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "freetype/2.9.1-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.", "homepage": "http://freetype.org"}, "FreeXL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FreeXL/1.0.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FreeXL is an open source library to extract valid data from within anExcel (.xls) spreadsheet.", "homepage": "https://www.gaia-gis.it/fossil/freexl/index"}, "FriBidi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FriBidi/1.0.5-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "FriBidi/1.0.10-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FriBidi/1.0.10-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FriBidi/1.0.10-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FriBidi/1.0.12-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FriBidi/1.0.12-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FriBidi/1.0.12-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FriBidi/1.0.9-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Free Implementation of the Unicode Bidirectional Algorithm.", "homepage": "https://github.com/fribidi/fribidi"}, "FSL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FSL/6.0.7.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "FSL/6.0.3-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FSL/6.0.5.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "fslpy-3.5.3"}}, "description": "FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.", "homepage": "https://www.fmrib.ox.ac.uk/fsl/"}, "fsom": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"fsom/20151117-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "fsom/20141119-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A tiny C library for managing SOM (Self-Organizing Maps) neural networks.", "homepage": "https://github.com/ekg/fsom"}, "funannotate": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"funannotate/1.8.13-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "distro-1.8.0, funannotate-1.8.13, natsort-8.3.1"}}, "description": "funannotate is a pipeline for genome annotation (built specifically for fungi, but will also work with higher eukaryotes)", "homepage": "https://funannotate.readthedocs.io"}, "GapFiller": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GapFiller/2.1.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GapFiller is a seed-and-extend local assembler to fill the gap within paired reads. It can be used for both DNA and RNA and it has been tested on Illumina data.", "homepage": "https://sourceforge.net/projects/gapfiller"}, "GAPPadder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GAPPadder/20170601-foss-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GAPPadder is tool for closing gaps on draft genomes with short sequencing data", "homepage": "https://github.com/simoncchu/GAPPadder"}, "GATB-Core": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GATB-Core/1.4.2-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GATB-Core is a high-performance and low memory footprint C++ library that provides a set of highly efficient algorithms to analyse NGS data sets", "homepage": "https://gatb.inria.fr/software/gatb-core"}, "GATE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GATE/9.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GATE/9.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GATE/9.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GATE/9.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GATE is an advanced opensource software developed by the international OpenGATE collaboration and dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography", "homepage": "http://www.opengatecollaboration.org/"}, "GATK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GATK/4.3.0.0-GCCcore-11.3.0-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GATK/4.4.0.0-GCCcore-12.3.0-Java-17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GATK/4.1.8.1-GCCcore-9.3.0-Java-1.8": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GATK/4.2.0.0-GCCcore-10.2.0-Java-11": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.", "homepage": "https://www.broadinstitute.org/gatk/"}, "Gaussian": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Gaussian/g16_C.01-iimpi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Gaussian/g16_C.01-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Gaussian/g16_C.01-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Gaussian is a computational chemistry software program.", "homepage": "http://www.gaussian.com/"}, "gbasis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gbasis/20210904-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python library for analytical evaluation and integration of Gaussian-type basis functions and related quantities.", "homepage": "https://github.com/theochem/gbasis"}, "Gblocks": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Gblocks/0.91b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis", "homepage": "http://molevol.cmima.csic.es/castresana/Gblocks.html"}, "GBprocesS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GBprocesS/4.0.0.post1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GBprocesS/2.3-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GBprocesS allows for the extraction of genomic inserts from NGSdata for GBS experiments. Preprocessing is performed in different stages thatare part of a linear pipeline where the steps are performed in order. GBprocesSprovides a flexible way to adjust the functionality to your needs, as theoperations required and the execution order vary depending on the GBS protocolused.", "homepage": "https://gbprocess.readthedocs.io/"}, "gc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gc/8.2.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gc/7.6.12-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "gc/7.6.12-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "gc/8.0.4-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.", "homepage": "https://hboehm.info/gc/"}, "GCC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GCC/8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCC/10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCC/10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCC/11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCC/11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCC/12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCC/12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCC/13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCC/9.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).", "homepage": "https://gcc.gnu.org/"}, "GCCcore": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GCCcore/8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCCcore/9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCCcore/10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCCcore/10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCCcore/11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCCcore/11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCCcore/12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCCcore/12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCCcore/13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GCCcore/8.2.0": {"clusters": ["doduo"]}}, "description": "The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).", "homepage": "https://gcc.gnu.org/"}, "gcccuda": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gcccuda/2019b": {"clusters": ["accelgor", "joltik"]}, "gcccuda/2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GNU Compiler Collection (GCC) based compiler toolchain, along with CUDA toolkit.", "homepage": "(none)"}, "GConf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GConf/3.2.6-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GConf/3.2.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GConf is a system for storing application preferences. It is intended for user preferences; not configuration of something like Apache, or arbitrary data storage.", "homepage": "https://gitlab.gnome.org/iainl/gconf"}, "gcsfs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gcsfs/2023.12.2.post1-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cachetools-5.3.2, decorator-5.1.1, fsspec-2023.12.2, g-0.0.3, gcsfs-2023.12.2.post1, google-api-core-2.15.0, google-auth-2.26.2, google-auth-oauthlib-1.2.0, google-cloud-core-2.4.1, google-cloud-storage-2.14.0, google-crc32c-1.5.0, google-resumable-media-2.7.0, googleapis-common-protos-1.62.0, oauthlib-3.2.2, pyasn1-modules-0.3.0, requests-2.31.0, requests-oauthlib-1.3.1, rsa-4.9"}}, "description": "Pythonic file-system interface for Google Cloud Storage.", "homepage": "https://github.com/fsspec/gcsfs"}, "GDAL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GDAL/3.3.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GDAL/3.3.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GDAL/3.5.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GDAL/3.6.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GDAL/3.7.1-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GDAL/3.0.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GDAL/3.0.4-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GDAL/3.2.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "GDAL/3.2.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GDAL/3.0.2-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"]}, "GDAL/3.2.1-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.", "homepage": "https://www.gdal.org"}, "gdc-client": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"], "versions": {"gdc-client/1.6.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"], "extensions": "cryptography-2.8, gdc-client-1.6.0, idna-2.8, intervaltree-3.0.2, jsonschema-2.6.0, lxml-4.4.2, ndg-httpsclient-0.5.0, progressbar2-3.43.1, pyasn1-0.4.3, pyOpenSSL-18.0.0, python-utils-2.5.6, PyYAML-3.13, requests-2.22.0, termcolor-1.1.0"}}, "description": "The gdc-client provides several convenience functions over the GDC API which provides general download/upload via HTTPS.", "homepage": "https://gdc.nci.nih.gov/access-data/gdc-data-transfer-tool"}, "GDCM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GDCM/3.0.21-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Grassroots DICOM: Cross-platform DICOM implementation", "homepage": "https://sourceforge.net/projects/gdcm"}, "GDGraph": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GDGraph/1.56-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ExtUtils::PkgConfig-1.16, GD-2.76, GD::Graph-1.56, GD::Text-0.86"}}, "description": "GDGraph is a Perl package to generate charts", "homepage": "https://metacpan.org/release/GDGraph"}, "Gdk-Pixbuf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Gdk-Pixbuf/2.40.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Gdk-Pixbuf/2.42.6-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Gdk-Pixbuf/2.42.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Gdk-Pixbuf/2.42.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Gdk-Pixbuf/2.42.10-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Gdk-Pixbuf/2.42.10-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Gdk-Pixbuf/2.38.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.", "homepage": "https://developer.gnome.org/gdk-pixbuf/stable/"}, "GDRCopy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GDRCopy/2.1-GCCcore-10.2.0-CUDA-11.1.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GDRCopy/2.1-GCCcore-10.2.0-CUDA-11.2.1": {"clusters": ["accelgor", "donphan", "joltik"]}, "GDRCopy/2.2-GCCcore-10.3.0": {"clusters": ["accelgor", "joltik"]}, "GDRCopy/2.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GDRCopy/2.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GDRCopy/2.3.1-GCCcore-12.3.0": {"clusters": ["accelgor", "donphan", "joltik"]}}, "description": "A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.", "homepage": "https://github.com/NVIDIA/gdrcopy"}, "Geant4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Geant4/10.7.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Geant4/11.0.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Geant4/11.0.2-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Geant4/11.0.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Geant4/10.6-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.", "homepage": "https://geant4.cern.ch/"}, "GeneMark-ET": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GeneMark-ET/4.65-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GeneMark-ET/4.71-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GeneMark-ET/4.71-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GeneMark-ET/4.57-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Eukaryotic gene prediction suite with automatic training", "homepage": "http://exon.gatech.edu/GeneMark"}, "genomepy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"genomepy/0.15.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "diskcache-5.4.0, genomepy-0.15.0, loguru-0.6.0, mysql-connector-python-8.0.32, norns-0.1.6, pyfaidx-0.7.2.1"}}, "description": "genomepy is designed to provide a simple and straightforward way to download and use genomic data", "homepage": "https://github.com/vanheeringen-lab/genomepy"}, "GenomeThreader": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GenomeThreader/1.7.3-Linux_x86_64-64bit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GenomeThreader is a software tool to compute gene structure predictions.", "homepage": "http://genomethreader.org"}, "genozip": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"genozip/13.0.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Genozip is a compressor for genomic files - it compresses FASTQ, SAM/BAM/CRAM, VCF, FASTA and others.", "homepage": "https://genozip.com"}, "gensim": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gensim/4.2.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "gensim-4.2.0, smart_open-6.0.0"}, "gensim/3.8.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "gensim-3.8.3, smart_open-4.1.2"}, "gensim/3.8.3-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "gensim-3.8.3, smart_open-4.1.2"}}, "description": "Gensim is a Python library for topic modelling, document indexing and similarity retrieval with large corpora.", "homepage": "https://radimrehurek.com/gensim"}, "geopandas": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"geopandas/0.12.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "geopandas-0.12.2, mapclassify-2.4.3"}, "geopandas/0.8.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Deprecated-1.2.10, descartes-1.1.0, geopandas-0.8.1, mapclassify-2.3.0, wrapt-1.12.1"}, "geopandas/0.8.1-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "Deprecated-1.2.10, descartes-1.1.0, geopandas-0.8.1, mapclassify-2.2.0, wrapt-1.12.1"}}, "description": "GeoPandas is a project to add support for geographic data to pandas objects.It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Seriesand pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects andperform geometric operations.", "homepage": "https://github.com/geopandas/geopandas"}, "GEOS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GEOS/3.9.1-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GEOS/3.9.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GEOS/3.10.3-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GEOS/3.11.1-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GEOS/3.12.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GEOS/3.8.0-GCC-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GEOS/3.8.0-iccifort-2019.5.281-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GEOS/3.8.1-GCC-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GEOS/3.9.1-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "GEOS/3.9.1-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)", "homepage": "https://trac.osgeo.org/geos"}, "Gerris": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Gerris/20131206-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Gerris is a Free Software program for the solution of the partial differential equations describing fluid flow", "homepage": "http://gfs.sourceforge.net/wiki/index.php/Main_Page"}, "GetOrganelle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GetOrganelle/1.7.5.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GetOrganelle/1.7.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GetOrganelle/1.7.4-pre2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "This toolkit assemblies organelle genome from genomic skimming data.", "homepage": "https://github.com/Kinggerm/GetOrganelle"}, "gettext": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gettext/0.19.8.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.20.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "gettext/0.20.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.20.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.21-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.21-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.21-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.21-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.21": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.21.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.21.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.21.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.22-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.22": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gettext/0.19.8.1-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we maybuild many other steps. This package offers to programmers, translators, and even users, a well integrated set of toolsand documentation", "homepage": "http://www.gnu.org/software/gettext/"}, "gfbf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gfbf/2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gfbf/2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gfbf/2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.", "homepage": "(none)"}, "GFF3-toolkit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GFF3-toolkit/2.1.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python programs for processing GFF3 files", "homepage": "https://gff3toolkit.readthedocs.io"}, "GffCompare": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GffCompare/0.12.6-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GffCompare/0.11.6-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GffCompare provides classification and reference annotation mapping and matching statistics for RNA-Seq assemblies (transfrags) or other generic GFF/GTF files.", "homepage": "https://github.com/gpertea/gffcompare"}, "gffread": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gffread/0.12.7-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GFF/GTF parsing utility providing format conversions,region filtering, FASTA sequence extraction and more.", "homepage": "https://ccb.jhu.edu/software/stringtie/gff.shtml#gffread"}, "gffutils": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gffutils/0.12-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argcomplete-3.1.1, argh-0.28.1, gffutils-0.12, simplejson-3.19.1, six-1.16.0"}}, "description": "Gffutils is a Python package for working with and manipulating the GFF and GTF format files typically used for genomic annotations.", "homepage": "https://github.com/daler/gffutils"}, "gflags": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gflags/2.2.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gflags/2.2.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gflags/2.2.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The gflags package contains a C++ library that implements commandline flagsprocessing. It includes built-in support for standard types such as stringand the ability to define flags in the source file in which they are used.", "homepage": "https://github.com/gflags/gflags"}, "Ghostscript": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Ghostscript/9.53.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ghostscript/9.54.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ghostscript/9.54.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ghostscript/9.56.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ghostscript/10.0.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ghostscript/10.01.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ghostscript/9.50-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Ghostscript/9.52-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.", "homepage": "https://ghostscript.com"}, "giflib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"giflib/5.2.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "giflib/5.2.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "giflib/5.2.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "giflib/5.2.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "giflib/5.2.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "giflib/5.2.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "giflib/5.2.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "giflib/5.2.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "giflib is a library for reading and writing gif images.It is API and ABI compatible with libungif which was in wide use whilethe LZW compression algorithm was patented.", "homepage": "http://giflib.sourceforge.net/"}, "GimmeMotifs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GimmeMotifs/0.17.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "biofluff-3.0.4, diskcache-5.4.0, feather-format-0.4.1, gimmemotifs-0.17.2, iteround-1.0.4, logomaker-0.8, loguru-0.6.0, palettable-3.3.0, xdg-6.0.0, xxhash-3.2.0"}}, "description": "Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments", "homepage": "https://github.com/vanheeringen-lab/gimmemotifs"}, "Giotto-Suite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Giotto-Suite/3.0.1-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "beachmat-2.14.0, BiocGenerics-0.44.0, BiocParallel-1.32.5, BiocSingular-1.14.0, dbscan-1.1-11, DelayedArray-0.24.0, DelayedMatrixStats-1.20.0, dqrng-0.3.0, Giotto-Suite-3.0.1, IRanges-2.32.0, limma-3.54.0, Matrix-1.5-3, MatrixGenerics-1.10.0, RcppAnnoy-0.0.20, rsvd-1.0.5, S4Vectors-0.36.1, ScaledMatrix-1.6.0, sitmo-2.0.2, smfishHmrf-0.1, sparseMatrixStats-1.10.0, uwot-0.1.11"}}, "description": "Giotto Suite is focused on building a modular platform for analyzing spatial-omics technologies and strives to be interoperable with other popular spatial analysis tools and classes. Using established packages optimized for large(r) data, Giotto Suite adopts fast and memory efficient methods to create an interactive analysis.", "homepage": "https://github.com/drieslab/Giotto"}, "git-lfs": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"git-lfs/3.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com", "homepage": "https://git-lfs.github.com"}, "git": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"git/2.23.0-GCCcore-9.3.0-nodocs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "git/2.28.0-GCCcore-10.2.0-nodocs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "git/2.32.0-GCCcore-10.3.0-nodocs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "git/2.33.1-GCCcore-11.2.0-nodocs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "git/2.36.0-GCCcore-11.3.0-nodocs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "git/2.38.1-GCCcore-12.2.0-nodocs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "git/2.41.0-GCCcore-12.3.0-nodocs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "git/2.42.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "git/2.23.0-GCCcore-8.3.0-nodocs": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "git/2.23.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Git is a free and open source distributed version control system designedto handle everything from small to very large projects with speed and efficiency.", "homepage": "https://git-scm.com/"}, "GitPython": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GitPython/3.1.24-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "gitdb-4.0.9, GitPython-3.1.24, smmap-5.0.0"}, "GitPython/3.1.27-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "gitdb-4.0.9, GitPython-3.1.27, smmap-5.0.0"}, "GitPython/3.1.31-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "gitdb-4.0.10, GitPython-3.1.31, smmap-5.0.0"}, "GitPython/3.1.40-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "gitdb-4.0.11, GitPython-3.1.40, smmap-5.0.1"}, "GitPython/3.1.0-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "gitdb-4.0.2, GitPython-3.1.0, smmap-3.0.1"}, "GitPython/3.1.9-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "gitdb-4.0.5, GitPython-3.1.9, smmap-3.0.4"}, "GitPython/3.1.14-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "gitdb-4.0.7, GitPython-3.1.14, smmap-4.0.0"}}, "description": "GitPython is a python library used to interact with Git repositories", "homepage": "https://gitpython.readthedocs.org"}, "GL2PS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GL2PS/1.4.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GL2PS/1.4.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GL2PS/1.4.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GL2PS: an OpenGL to PostScript printing library", "homepage": "https://www.geuz.org/gl2ps/"}, "glew": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"glew/2.1.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "glew/2.2.0-GCCcore-11.2.0-egl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "glew/2.2.0-GCCcore-11.2.0-osmesa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "glew/2.2.0-GCCcore-12.2.0-egl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "glew/2.2.0-GCCcore-12.3.0-osmesa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "glew/2.1.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "glew/2.1.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-sourceC/C++ extension loading library. GLEW provides efficient run-time mechanismsfor determining which OpenGL extensions are supported on the target platform.", "homepage": "http://glew.sourceforge.net/"}, "GLFW": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GLFW/3.3.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLFW/3.3.8-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GLFW is an Open Source, multi-platform library for OpenGL,OpenGL ES and Vulkan development on the desktop", "homepage": "https://www.glfw.org"}, "glib-networking": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"glib-networking/2.72.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "glib-networking/2.68.1-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Network extensions for GLib", "homepage": "https://gitlab.gnome.org/GNOME/glib-networking"}, "GLib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GLib/2.62.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GLib/2.64.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLib/2.66.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLib/2.68.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLib/2.69.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLib/2.72.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLib/2.75.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLib/2.77.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GLib is one of the base libraries of the GTK+ project", "homepage": "https://www.gtk.org/"}, "GLIMPSE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GLIMPSE/2.0.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLIMPSE/2.0.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GLIMPSE2 is a set of tools for phasing and imputation for low-coverage sequencing datasets", "homepage": "https://github.com/odelaneau/GLIMPSE"}, "GLM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GLM/0.9.9.8-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLM/0.9.9.8-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications.", "homepage": "https://github.com/g-truc/glm"}, "GlobalArrays": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GlobalArrays/5.8-iomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GlobalArrays/5.8-intel-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Global Arrays (GA) is a Partitioned Global Address Space (PGAS) programming model", "homepage": "https://hpc.pnl.gov/globalarrays"}, "glog": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"glog/0.6.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "glog/0.6.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "glog/0.4.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A C++ implementation of the Google logging module.", "homepage": "https://github.com/google/glog"}, "GLPK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GLPK/4.65-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLPK/5.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLPK/5.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLPK/5.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLPK/5.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLPK/5.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GLPK/4.65-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GLPK/4.65-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.", "homepage": "https://www.gnu.org/software/glpk/"}, "GMAP-GSNAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GMAP-GSNAP/2023-02-17-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GMAP-GSNAP/2023-04-20-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GMAP-GSNAP/2019-09-12-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences GSNAP: Genomic Short-read Nucleotide Alignment Program", "homepage": "http://research-pub.gene.com/gmap/"}, "GMP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GMP/6.1.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GMP/6.2.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GMP/6.2.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GMP/6.2.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GMP/6.2.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GMP/6.2.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GMP/6.2.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GMP/6.2.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GMP/6.1.2-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.", "homepage": "https://gmplib.org/"}, "gmpy2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gmpy2/2.1.2-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "gmpy2/2.1.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gmpy2/2.1.2-intel-compilers-2021.4.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gmpy2/2.1.2-intel-compilers-2022.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gmpy2/2.1.5-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gmpy2/2.1.5-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gmpy2/2.1.0b4-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "gmpy2/2.1.0b5-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "gmpy2/2.1.0b5-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x", "homepage": "https://github.com/aleaxit/gmpy"}, "gnuplot": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gnuplot/5.2.8-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "gnuplot/5.4.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gnuplot/5.4.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gnuplot/5.4.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gnuplot/5.4.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gnuplot/5.4.8-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gnuplot/5.2.8-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Portable interactive, function plotting utility", "homepage": "http://gnuplot.sourceforge.net/"}, "GnuTLS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GnuTLS/3.7.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GnuTLS/3.7.2-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability.", "homepage": "https://www.gnutls.org"}, "Go": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Go/1.17.6": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Go/1.21.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Go/1.21.6": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Go/1.17.3": {"clusters": ["doduo", "donphan", "joltik"]}, "Go/1.14": {"clusters": ["donphan", "joltik"]}}, "description": "Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.", "homepage": "https://www.golang.org"}, "GOATOOLS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GOATOOLS/1.3.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GOATOOLS/1.3.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GOATOOLS/1.1.6-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A Python library for Gene Ontology analyses", "homepage": "https://github.com/tanghaibao/goatools"}, "GObject-Introspection": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GObject-Introspection/1.63.1-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GObject-Introspection/1.66.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GObject-Introspection/1.68.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GObject-Introspection/1.68.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GObject-Introspection/1.72.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GObject-Introspection/1.74.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GObject-Introspection/1.76.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GObject-Introspection/1.64.0-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.", "homepage": "https://gi.readthedocs.io/en/latest/"}, "gomkl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gomkl/2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gomkl/2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gomkl/2020a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GNU Compiler Collection (GCC) based compiler toolchain with OpenMPI and MKL", "homepage": "(none)"}, "gompi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gompi/2019b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gompi/2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gompi/2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gompi/2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gompi/2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gompi/2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gompi/2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gompi/2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gompi/2020a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.", "homepage": "(none)"}, "gompic": {"clusters": ["accelgor", "doduo", "joltik", "skitty"], "versions": {"gompic/2020b": {"clusters": ["accelgor", "doduo", "joltik", "skitty"]}}, "description": "GNU Compiler Collection (GCC) based compiler toolchain along with CUDA toolkit, including OpenMPI for MPI support with CUDA features enabled.", "homepage": "(none)"}, "googletest": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"googletest/1.11.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "googletest/1.11.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "googletest/1.12.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "googletest/1.13.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "googletest/1.10.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Google's framework for writing C++ tests on a variety of platforms", "homepage": "https://github.com/google/googletest"}, "GPAW-setups": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GPAW-setups/0.9.20000": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PAW setup for the GPAW Density Functional Theory package. Users can install setups manually using 'gpaw install-data' or use setups from this package. The versions of GPAW and GPAW-setups can be intermixed.", "homepage": "https://wiki.fysik.dtu.dk/gpaw/"}, "GPAW": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GPAW/22.8.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GPAW/22.8.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GPAW/22.8.0-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GPAW/20.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GPAW/20.1.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GPAW is a density-functional theory (DFT) Python code based on the projector-augmented wave (PAW) method and the atomic simulation environment (ASE). It uses real-space uniform grids and multigrid methods or atom-centered basis-functions.", "homepage": "https://wiki.fysik.dtu.dk/gpaw/"}, "gperf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gperf/3.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "gperf/3.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gperf/3.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gperf/3.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gperf/3.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gperf/3.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gperf/3.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gperf/3.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gperf/3.1-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.", "homepage": "http://www.gnu.org/software/gperf/"}, "gperftools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gperftools/2.9.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "gperftools/2.10-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gperftools/2.14-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gperftools/2.7.90-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "gperftools are for use by developers so that they can create more robust applications. Especially of use to those developing multi-threaded applications in C++ with templates. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler.", "homepage": "https://github.com/gperftools/gperftools"}, "GPy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"GPy/1.10.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "GPy-1.10.0, paramz-0.9.5"}}, "description": "GPy is a Gaussian Process (GP) framework written in Python", "homepage": "https://sheffieldml.github.io/GPy"}, "GPyTorch": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GPyTorch/1.6.0-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}, "GPyTorch/1.3.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GPyTorch is a Gaussian process library implemented using PyTorch.", "homepage": "https://gpytorch.ai"}, "Gradle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Gradle/8.6-Java-17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Complete Gradle install.From mobile apps to microservices, from small startups to big enterprises,Gradle helps teams build, automate and deliver better software, faster.", "homepage": "https://gradle.org"}, "Graphene": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Graphene/1.10.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Graphene is a thin layer of types for graphic libraries", "homepage": "https://ebassi.github.io/graphene/"}, "graphite2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"graphite2/1.3.14-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "graphite2/1.3.14-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "graphite2/1.3.14-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "graphite2/1.3.14-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Graphite is a \"smart font\" system developed specifically to handle the complexities of lesser-known languages of the world.", "homepage": "https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home"}, "graphviz-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"graphviz-python/0.20.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "graphviz-python/0.20.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Simple Python interface for Graphviz", "homepage": "https://pypi.python.org/pypi/graphviz"}, "Graphviz": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Graphviz/2.47.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Graphviz/2.50.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Graphviz/5.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Graphviz/8.1.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Graphviz/2.42.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Graphviz/2.42.2-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Graphviz/2.47.0-GCCcore-10.2.0-Java-11": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains.", "homepage": "https://www.graphviz.org/"}, "GRASP-suite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GRASP-suite/2023-05-09-Java-17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GRASP-suite is a collection of tools and tutorials to perform and analyse ancestral sequence reconstruction.", "homepage": "https://github.com/bodenlab/GRASP-suite/"}, "GRASS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GRASS/8.2.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Geographic Resources Analysis Support System - used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization", "homepage": "https://grass.osgeo.org"}, "Greenlet": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Greenlet/2.0.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Greenlet/2.0.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The greenlet package is a spin-off of Stackless, a version of CPython thatsupports micro-threads called \"tasklets\". Tasklets run pseudo-concurrently (typically in a singleor a few OS-level threads) and are synchronized with data exchanges on \"channels\".A \"greenlet\", on the other hand, is a still more primitive notion of micro-thread with no implicitscheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs.", "homepage": "https://github.com/python-greenlet/greenlet"}, "grid": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"grid/20220610-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Grid is a free and open-source Python library for numerical integration, interpolation and differentiation of interest for the quantum chemistry community.", "homepage": "https://grid.qcdevs.org/"}, "groff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"groff/1.22.4-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "groff/1.22.4-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "groff/1.22.4-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "groff/1.22.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "groff/1.22.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "groff/1.22.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "groff/1.22.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "groff/1.22.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.", "homepage": "https://www.gnu.org/software/groff"}, "GROMACS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GROMACS/2021.2-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "gmxapi-0.2.0"}, "GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2": {"clusters": ["accelgor", "joltik"], "extensions": "gmxapi-0.2.0"}, "GROMACS/2021.3-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "gmxapi-0.2.0"}, "GROMACS/2019.3-foss-2019b": {"clusters": ["doduo", "donphan", "joltik"]}, "GROMACS/2019.4-foss-2019b": {"clusters": ["doduo", "donphan", "joltik"]}, "GROMACS/2020-foss-2019b": {"clusters": ["doduo", "donphan", "joltik"]}, "GROMACS/2021-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "gmxapi-0.2.0"}}, "description": "GROMACS is a versatile package to perform molecular dynamics, i.e. simulate theNewtonian equations of motion for systems with hundreds to millions ofparticles.This is a CPU only build, containing both MPI and threadMPI buildsfor both single and double precision.It also contains the gmxapi extension for the single precision MPI build.", "homepage": "https://www.gromacs.org"}, "GSL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GSL/2.6-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GSL/2.7-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GSL/2.7-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GSL/2.7-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GSL/2.7-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GSL/2.7-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GSL/2.7-intel-compilers-2021.4.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GSL/2.6-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GSL/2.6-GCC-9.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "GSL/2.6-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GSL/2.6-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GSL/2.6-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.", "homepage": "https://www.gnu.org/software/gsl/"}, "GST-plugins-bad": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GST-plugins-bad/1.20.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.", "homepage": "https://gstreamer.freedesktop.org/"}, "GST-plugins-base": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GST-plugins-base/1.18.4-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GST-plugins-base/1.18.5-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GST-plugins-base/1.20.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.", "homepage": "https://gstreamer.freedesktop.org/"}, "GStreamer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GStreamer/1.18.4-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GStreamer/1.18.5-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GStreamer/1.20.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.", "homepage": "https://gstreamer.freedesktop.org/"}, "GTDB-Tk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GTDB-Tk/2.0.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GTDB-Tk/2.3.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "GTDB-Tk-2.3.2"}, "GTDB-Tk/1.0.2-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GTDB-Tk/1.3.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GTDB-Tk/1.5.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GTDB-Tk/1.7.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.", "homepage": "https://github.com/Ecogenomics/GTDBTk"}, "GTK+": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GTK+/3.24.23-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GTK+/2.24.33-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GTK+/3.24.13-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.", "homepage": "https://developer.gnome.org/gtk3/stable/"}, "GTK2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GTK2/2.24.33-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GTK2/2.24.33-GCCcore-10.3.0": {"clusters": ["donphan", "joltik"]}}, "description": "The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.", "homepage": "https://developer.gnome.org/gtk+/stable/"}, "GTK3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GTK3/3.24.29-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "GTK3/3.24.31-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GTK3/3.24.35-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GTK3/3.24.37-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.", "homepage": "https://developer.gnome.org/gtk3/stable/"}, "GTK4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GTK4/4.7.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.", "homepage": "https://docs.gtk.org/gtk4/"}, "GTS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GTS/0.7.6-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GTS/0.7.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GTS/0.7.6-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GTS/0.7.6-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "GTS/0.7.6-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GTS/0.7.6-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles.", "homepage": "http://gts.sourceforge.net/"}, "Guile": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Guile/3.0.7-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Guile/1.8.8-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guile/1.8.8-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guile/2.2.7-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.", "homepage": "https://www.gnu.org/software/guile/"}, "Guppy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Guppy/5.0.15-gpu": {"clusters": ["accelgor", "joltik"]}, "Guppy/5.0.16-gpu": {"clusters": ["accelgor", "joltik"]}, "Guppy/6.0.1-gpu": {"clusters": ["accelgor", "joltik"]}, "Guppy/6.1.2-gpu": {"clusters": ["accelgor", "joltik"]}, "Guppy/6.1.7-gpu": {"clusters": ["accelgor", "joltik"]}, "Guppy/6.3.7-gpu": {"clusters": ["accelgor", "joltik"]}, "Guppy/6.3.8-gpu": {"clusters": ["accelgor", "joltik"]}, "Guppy/6.4.2-gpu": {"clusters": ["accelgor", "joltik"]}, "Guppy/6.4.6-gpu": {"clusters": ["accelgor", "donphan", "joltik"]}, "Guppy/6.5.7-cpu": {"clusters": ["accelgor", "doduo", "gallade", "skitty"]}, "Guppy/6.5.7-gpu": {"clusters": ["accelgor", "donphan", "joltik"]}, "Guppy/4.0.15-cpu": {"clusters": ["doduo", "donphan", "joltik"]}, "Guppy/4.2.2-cpu": {"clusters": ["doduo", "donphan", "joltik"]}, "Guppy/4.4.1-cpu": {"clusters": ["doduo", "donphan", "joltik"]}, "Guppy/5.0.7-cpu": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guppy/5.0.11-cpu": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guppy/5.0.14-cpu": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guppy/5.0.15-cpu": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guppy/5.0.16-cpu": {"clusters": ["doduo", "donphan", "joltik"]}, "Guppy/6.0.1-cpu": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guppy/6.1.2-cpu": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guppy/6.1.7-cpu": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guppy/6.3.7-cpu": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guppy/6.3.8-cpu": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guppy/6.4.2-cpu": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Guppy/6.4.6-cpu": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Guppy/3.5.2-cpu": {"clusters": ["donphan", "joltik"]}, "Guppy/5.0.7-gpu": {"clusters": ["joltik"]}, "Guppy/5.0.11-gpu": {"clusters": ["joltik"]}, "Guppy/5.0.14-gpu": {"clusters": ["joltik"]}}, "description": "Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies' basecalling algorithms, and several bioinformatic post-processing features.", "homepage": "https://nanoporetech.com/nanopore-sequencing-data-analysis"}, "Gurobi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Gurobi/9.5.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Gurobi/9.5.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Gurobi/11.0.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "gurobipy-11.0.0"}, "Gurobi/9.1.0": {"clusters": ["doduo", "donphan", "joltik"]}, "Gurobi/9.1.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Gurobi Optimizer is a state-of-the-art solver for mathematical programming.The solvers in the Gurobi Optimizer were designed from the ground up to exploit modern architectures and multi-core processors, using the most advanced implementations of the latest algorithms.", "homepage": "https://www.gurobi.com"}, "GUSHR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GUSHR/2020-09-28-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Assembly-free construction of UTRs from short read RNA-Seq data on the basis of coding sequence annotation.", "homepage": "https://github.com/Gaius-Augustus/GUSHR"}, "gzip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gzip/1.10-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "gzip/1.10-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gzip/1.10-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gzip/1.10-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gzip/1.12-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gzip/1.12-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gzip/1.12-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gzip/1.13-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "gzip/1.10-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "gzip (GNU zip) is a popular data compression program as a replacement for compress", "homepage": "https://www.gnu.org/software/gzip/"}, "h5netcdf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"h5netcdf/1.2.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "h5netcdf-1.2.0"}}, "description": "A Python interface for the netCDF4 file-format that reads and writes local orremote HDF5 files directly via h5py or h5pyd, without relying on the UnidatanetCDF library.", "homepage": "https://h5netcdf.org/"}, "h5py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"h5py/2.10.0-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "h5py/3.1.0-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "h5py/3.1.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "h5py/3.2.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "h5py/3.2.1-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "h5py/3.6.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "h5py/3.6.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "h5py/3.7.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "h5py/3.7.0-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "h5py/3.8.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "h5py/3.9.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "h5py/2.10.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "h5py/2.10.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "h5py/2.10.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "h5py/2.10.0-intel-2020a-Python-2.7.18": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "h5py/3.1.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.", "homepage": "https://www.h5py.org/"}, "HarfBuzz": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HarfBuzz/2.6.4-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "HarfBuzz/2.6.7-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HarfBuzz/2.8.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HarfBuzz/2.8.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HarfBuzz/4.2.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HarfBuzz/5.3.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HarfBuzz/5.3.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HarfBuzz/2.6.4-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "HarfBuzz is an OpenType text shaping engine.", "homepage": "https://www.freedesktop.org/wiki/Software/HarfBuzz"}, "hatchling": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hatchling/1.18.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "editables-0.3, hatch_fancy_pypi_readme-23.1.0, hatch_vcs-0.3.0, hatchling-1.18.0, packaging-23.1, pathspec-0.11.1, pluggy-1.2.0, setuptools_scm-7.1.0, tomli-2.0.1, trove_classifiers-2023.5.24, typing_extensions-4.6.3"}, "hatchling/1.18.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "editables-0.5, hatch_fancy_pypi_readme-23.1.0, hatch_vcs-0.3.0, hatchling-1.18.0, packaging-23.2, pathspec-0.11.2, pluggy-1.3.0, setuptools-scm-8.0.4, tomli-2.0.1, trove_classifiers-2023.10.18, typing_extensions-4.8.0"}}, "description": "Extensible, standards compliant build backend used by Hatch,a modern, extensible Python project manager.", "homepage": "https://hatch.pypa.io"}, "HDBSCAN": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HDBSCAN/0.8.29-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "HDBSCAN-0.8.29"}}, "description": "The hdbscan library is a suite of tools to use unsupervised learning to find clusters, or dense regions, of a dataset. The primary algorithm is HDBSCAN* as proposed by Campello, Moulavi, and Sander. The library provides a high performance implementation of this algorithm, along with tools for analysing the resulting clustering.", "homepage": "http://hdbscan.readthedocs.io/en/latest/"}, "HDF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HDF/4.2.15-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF/4.2.15-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF/4.2.15-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF/4.2.15-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF/4.2.16-2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF/4.2.14-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HDF/4.2.15-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF/4.2.15-GCCcore-9.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.", "homepage": "https://www.hdfgroup.org/products/hdf4/"}, "HDF5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HDF5/1.10.5-gompi-2019b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "HDF5/1.10.6-iimpi-2020a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.10.7-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.10.7-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.10.7-gompic-2020b": {"clusters": ["accelgor", "joltik"]}, "HDF5/1.10.7-iompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.10.8-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "HDF5/1.12.1-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.12.1-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.12.2-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.12.2-iimpi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.13.1-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "HDF5/1.14.0-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.14.0-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.10.5-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HDF5/1.10.6-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HDF5/1.10.7-iimpi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "HDF5/1.10.7-iimpi-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.", "homepage": "https://portal.hdfgroup.org/display/support"}, "help2man": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"help2man/1.47.8-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "help2man/1.47.12-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "help2man/1.47.16-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "help2man/1.48.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "help2man/1.48.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "help2man/1.49.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "help2man/1.49.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "help2man/1.49.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "help2man/1.49.3-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "help2man/1.47.4": {"clusters": ["doduo"]}, "help2man/1.47.7-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "help2man produces simple manual pages from the '--help' and '--version' output of other commands.", "homepage": "https://www.gnu.org/software/help2man/"}, "HH-suite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HH-suite/3.3.0-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "HH-suite/3.3.0-gompi-2021b": {"clusters": ["accelgor", "donphan", "joltik"]}, "HH-suite/3.3.0-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HH-suite/3.3.0-gompic-2020b": {"clusters": ["accelgor", "joltik"]}, "HH-suite/3.2.0-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HH-suite/3.3.0-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).", "homepage": "https://github.com/soedinglab/hh-suite"}, "HiCExplorer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HiCExplorer/3.7.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cleanlab-2.2.0, fit-nbinom-1.1, hic2cool-0.8.3, HiCExplorer-3.7.2, intervaltree-3.1.0, termcolor-1.1.0"}}, "description": "HiCexplorer addresses the common tasks of Hi-C analysis from processing to visualization.", "homepage": "http://hicexplorer.readthedocs.org/"}, "HiCMatrix": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HiCMatrix/17-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "HiCMatrix-17, intervaltree-3.1.0"}}, "description": "This library implements the central class of HiCExplorer to manage Hi-C interaction matrices.", "homepage": "https://github.com/deeptools/HiCMatrix"}, "hifiasm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hifiasm/0.19.7-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Hifiasm: a haplotype-resolved assembler for accurate Hifi reads.", "homepage": "https://github.com/chhylp123/hifiasm"}, "HighFive": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HighFive/2.7.1-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "HighFive is a modern header-only C++11 friendly interface for libhdf5.", "homepage": "https://github.com/BlueBrain/HighFive"}, "Highway": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Highway/1.0.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Highway/1.0.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Highway/1.0.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Highway/1.0.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Highway is a C++ library for SIMD (Single Instruction, Multiple Data), i.e. applying the sameoperation to 'lanes'.", "homepage": "https://github.com/google/highway"}, "hiredis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hiredis/1.0.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Hiredis is a minimalistic C client library for the Redis database.It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command.", "homepage": "https://github.com/redis/hiredis"}, "HISAT2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HISAT2/2.2.1-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HISAT2/2.2.1-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HISAT2/2.2.1-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).", "homepage": "https://daehwankimlab.github.io/hisat2"}, "histolab": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"histolab/0.4.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "histolab/0.4.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Library for Digital Pathology Image Processing", "homepage": "https://github.com/histolab/histolab"}, "HMMER": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HMMER/3.3.2-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HMMER/3.3.2-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "HMMER/3.3.2-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "HMMER/3.3.2-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HMMER/3.3.2-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HMMER/3.3.2-gompic-2020b": {"clusters": ["accelgor", "joltik"]}, "HMMER/3.3.2-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "HMMER/3.4-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HMMER/3.2.1-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HMMER/3.2.1-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HMMER/3.3.1-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HMMER/3.3.1-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HMMER/3.3.2-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HMMER/3.3.2-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HMMER/3.3.2-iimpi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.", "homepage": "http://hmmer.org/"}, "hmmlearn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hmmlearn/0.3.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hmmlearn/0.3.0-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "hmmlearn is a set of algorithms for unsupervised learning and inference of Hidden Markov Models", "homepage": "https://github.com/hmmlearn/hmmlearn"}, "Horovod": {"clusters": ["accelgor", "joltik"], "versions": {"Horovod/0.21.1-fosscuda-2020b-TensorFlow-2.4.1": {"clusters": ["accelgor", "joltik"], "extensions": "cloudpickle-1.5.0, horovod-0.21.1"}, "Horovod/0.21.3-fosscuda-2020b-PyTorch-1.7.1": {"clusters": ["accelgor", "joltik"], "extensions": "cloudpickle-1.6.0, horovod-0.21.3"}, "Horovod/0.22.0-fosscuda-2020b-PyTorch-1.8.1": {"clusters": ["accelgor"], "extensions": "cloudpickle-1.6.0, horovod-0.22.0"}, "Horovod/0.23.0-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0": {"clusters": ["accelgor"], "extensions": "cloudpickle-2.0.0, horovod-0.23.0"}, "Horovod/0.23.0-fosscuda-2020b-TensorFlow-2.5.0": {"clusters": ["accelgor", "joltik"], "extensions": "cloudpickle-1.6.0, horovod-0.23.0"}}, "description": "Horovod is a distributed training framework for TensorFlow.", "homepage": "https://github.com/uber/horovod"}, "how_are_we_stranded_here": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"how_are_we_stranded_here/1.0.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Python package for testing strandedness of RNA-Seq fastq files", "homepage": "https://github.com/signalbash/how_are_we_stranded_here"}, "HPL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HPL/2.0.15-intel-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"]}, "HPL/2.3-foss-2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HPL/2.3-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HPL/2.3-gobff-2020b": {"clusters": ["doduo"]}, "HPL/2.3-iibff-2020b": {"clusters": ["doduo"]}, "HPL/2.3-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.", "homepage": "http://www.netlib.org/benchmark/hpl/"}, "HTSeq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HTSeq/0.11.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "HTSeq/2.0.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "HTSeq-2.0.2"}}, "description": "HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.", "homepage": "https://github.com/simon-anders/htseq"}, "HTSlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HTSlib/1.11-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HTSlib/1.12-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "HTSlib/1.14-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HTSlib/1.15.1-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HTSlib/1.17-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HTSlib/1.18-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "HTSlib/1.10.2-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HTSlib/1.10.2-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HTSlib/1.10.2-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HTSlib/1.12-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix", "homepage": "https://www.htslib.org/"}, "HTSplotter": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HTSplotter/0.15-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "HTSplotter-0.15, minio-7.1.13, pypdf-3.4.1, PyPDF2-3.0.1, PyPDF3-1.0.6"}, "HTSplotter/2.11-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "HTSplotter-2.11, minio-7.1.13, pypdf-3.6.0, PyPDF2-3.0.1, PyPDF3-1.0.6"}}, "description": "HTSplotter allows an end-to-end data processing and analysis of chemical and genetic in vitroperturbation screens.", "homepage": "https://github.com/CBIGR/HTSplotter"}, "humann": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"humann/3.6-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "humann-3.6"}}, "description": "HUMAnN v3 is a pipeline for efficiently and accurately determining the coverage and abundance of microbial pathways in a community from metagenomic data.Sequencing a metagenome typically produces millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question: What are the microbes in my community-of-interest doing (or capable of doing)?", "homepage": "http://huttenhower.sph.harvard.edu/humann"}, "hunspell": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hunspell/1.7.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Hunspell is a spell checker and morphological analyzer library and program designed for languageswith rich morphology and complex word compounding or character encoding.", "homepage": "http://hunspell.github.io/"}, "hwloc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hwloc/1.11.12-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.2.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.2.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.4.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.5.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.7.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.8.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.9.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hwloc/2.9.2-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.", "homepage": "https://www.open-mpi.org/projects/hwloc/"}, "Hybpiper": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Hybpiper/2.1.6-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Hybpiper-2.1.6, Pebble-5.0.3, progressbar2-4.2.0, python-utils-3.7.0"}}, "description": "HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts/modules that wrap and connect bioinformatics tools in order to extract target sequences from high-throughput DNA sequencing reads.", "homepage": "https://github.com/mossmatters/HybPiper"}, "Hydra": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Hydra/1.1.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "antlr4-python3-runtime-4.8, hydra-1.1.1, omegaconf-2.1.1"}}, "description": "Hydra is an open-source Python framework that simplifies the development ofresearch and other complex applications. The key feature is the ability todynamically create a hierarchical configuration by composition and override itthrough config files and the command line. The name Hydra comes from itsability to run multiple similar jobs - much like a Hydra with multiple heads.", "homepage": "https://hydra.cc/"}, "Hyperopt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Hyperopt/0.2.7-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "cloudpickle-2.0.0, hyperopt-0.2.7, py4j-0.10.9.5"}, "Hyperopt/0.2.7-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cloudpickle-2.2.1, hyperopt-0.2.7, py4j-0.10.9.7"}}, "description": "hyperopt is a Python library for optimizing over awkward search spaces with real-valued, discrete, and conditional dimensions.", "homepage": "http://hyperopt.github.io/hyperopt/"}, "hypothesis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"hypothesis/4.57.1-GCCcore-11.2.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/5.41.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/5.41.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.13.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.14.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.46.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.68.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.82.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/6.90.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "hypothesis/4.44.2-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "attrs-19.3.0, hypothesis-4.44.2"}}, "description": "Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.", "homepage": "https://github.com/HypothesisWorks/hypothesis"}, "Hypre": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Hypre/2.18.2-foss-2019b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Hypre/2.24.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Hypre/2.25.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Hypre/2.18.2-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Hypre/2.18.2-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Hypre/2.20.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Hypre/2.21.0-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.", "homepage": "https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods"}, "iccifort": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"iccifort/2020.1.217": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iccifort/2020.4.304": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iccifort/2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Intel C, C++ & Fortran compilers", "homepage": "https://software.intel.com/en-us/intel-compilers/"}, "ICU": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ICU/64.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ICU/67.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/69.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/69.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/71.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/72.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/73.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ICU/66.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.", "homepage": "https://icu-project.org/"}, "IDBA-UD": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"IDBA-UD/1.1.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "IDBA-UD/1.1.3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short ReadsSequencing data with Highly Uneven Sequencing Depth. It is an extension of IDBA algorithm.IDBA-UD also iterates from small k to a large k. In each iteration, short and low-depthcontigs are removed iteratively with cutoff threshold from low to high to reduce the errorsin low-depth and high-depth regions. Paired-end reads are aligned to contigs and assembledlocally to generate some missing k-mers in low-depth regions. With these technologies, IDBA-UDcan iterate k value of de Bruijn graph to a very large value with less gaps and less branchesto form long contigs in both low-depth and high-depth regions.", "homepage": "https://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/"}, "igraph": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"igraph/0.9.4-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "igraph/0.9.5-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "igraph/0.10.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "igraph/0.10.10-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "igraph/0.8.2-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "igraph/0.9.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "igraph/0.9.1-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "igraph is a collection of network analysis tools with the emphasis on efficiency, portability and ease of use. igraph is open source and free. igraph can be programmed in R, Python and C/C++.", "homepage": "https://igraph.org"}, "igvShiny": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"igvShiny/20240112-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "An htmlwidget version of igv, for RStudio and Shiny apps", "homepage": "https://github.com/gladkia/igvShiny"}, "iimpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"iimpi/2020a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iimpi/2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iimpi/2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iimpi/2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iimpi/2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iimpi/2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iimpi/2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "iimpi/2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Intel C/C++ and Fortran compilers, alongside Intel MPI.", "homepage": "https://software.intel.com/parallel-studio-xe"}, "imagecodecs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"imagecodecs/2022.9.26-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bitshuffle-0.5.1, imagecodecs-2022.9.26"}}, "description": "Imagecodecs is a Python library that provides block-oriented, in-memory buffer transformation,compression, and decompression functions for use in the tifffile, czifile, zarr, and otherscientific image input/output modules.", "homepage": "https://github.com/cgohlke/imagecodecs"}, "imageio": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"imageio/2.10.5-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "imageio/2.13.5-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imageio/2.22.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imageio/2.9.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Imageio is a Python library that provides an easy interface to read and write a wide range of image data, including animated images, video, volumetric data, and scientific formats.", "homepage": "https://imageio.github.io"}, "ImageMagick": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ImageMagick/7.0.10-35-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ImageMagick/7.0.11-14-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ImageMagick/7.1.0-4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ImageMagick/7.1.0-37-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ImageMagick/7.1.0-53-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ImageMagick/7.1.1-15-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ImageMagick/7.0.9-5-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ImageMagick/7.0.10-1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ImageMagick is a software suite to create, edit, compose, or convert bitmap images", "homepage": "https://www.imagemagick.org/"}, "Imath": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Imath/3.1.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Imath/3.1.6-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Imath/3.1.7-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics", "homepage": "https://imath.readthedocs.io/en/latest/"}, "imbalanced-learn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"imbalanced-learn/0.10.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "imbalanced-learn-0.10.1, joblib-1.2.0"}}, "description": "imbalanced-learn is a Python package offering a number of re-sampling techniques commonly used in datasets showing strong between-class imbalance.", "homepage": "https://github.com/scikit-learn-contrib/imbalanced-learn"}, "imgaug": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"imgaug/0.4.0-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}, "imgaug/0.4.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "This python library helps you with augmenting images for your machine learning projects. It converts a set of input images into a new, much larger set of slightly altered images.", "homepage": "https://imgaug.readthedocs.io/en/latest/"}, "imkl-FFTW": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"imkl-FFTW/2021.4.0-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imkl-FFTW/2022.1.0-iimpi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imkl-FFTW/2022.2.1-iimpi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imkl-FFTW/2023.1.0-iimpi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FFTW interfaces using Intel oneAPI Math Kernel Library", "homepage": "https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html"}, "imkl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"imkl/2018.4.274-iimpi-2020a": {"clusters": ["accelgor", "doduo", "gallade"]}, "imkl/2018.4.274-NVHPC-21.2": {"clusters": ["accelgor"]}, "imkl/2020.0.166-gompi-2023a": {"clusters": ["accelgor", "doduo", "gallade"]}, "imkl/2020.0.166-iimpi-2020b": {"clusters": ["accelgor", "doduo", "gallade"]}, "imkl/2020.1.217-iimpi-2020a": {"clusters": ["accelgor", "donphan", "joltik", "skitty"]}, "imkl/2020.4.304-iompi-2020b": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"]}, "imkl/2021.2.0-gompi-2021a": {"clusters": ["accelgor", "donphan", "joltik", "skitty"]}, "imkl/2021.2.0-iompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imkl/2021.4.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imkl/2022.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imkl/2022.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imkl/2023.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "imkl/2018.4.274-gompi-2020a": {"clusters": ["doduo", "gallade"]}, "imkl/2018.4.274-gompi-2021a": {"clusters": ["doduo", "gallade"]}, "imkl/2018.4.274-iimpi-2019b": {"clusters": ["doduo"]}, "imkl/2018.4.274-iimpi-2020b": {"clusters": ["doduo", "gallade"]}, "imkl/2018.4.274-iompi-2020a": {"clusters": ["doduo"]}, "imkl/2018.4.274-iompi-2020b": {"clusters": ["doduo", "gallade"]}, "imkl/2019.5.281-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "imkl/2020.0.166-gompi-2020a": {"clusters": ["doduo"]}, "imkl/2020.0.166-iimpi-2020a": {"clusters": ["doduo"]}, "imkl/2020.0.166-iompi-2020a": {"clusters": ["doduo"]}, "imkl/2021.2.0-iimpi-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "imkl/2020.4.304-NVHPC-21.2": {"clusters": ["donphan", "joltik"]}, "imkl/2020.1.217-gompi-2020a": {"clusters": ["donphan", "joltik", "skitty"]}, "imkl/2020.4.304-iimpi-2020b": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}, "imkl/2023.1.0-gompi-2023a": {"clusters": ["donphan", "joltik", "skitty"]}, "imkl/2019.5.281-iimpic-2019b": {"clusters": ["joltik"]}, "imkl/2020.1.217-iimpic-2020a": {"clusters": ["joltik"]}, "imkl/2020.4.304-iimpic-2020b": {"clusters": ["joltik"]}}, "description": "Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.", "homepage": "https://software.intel.com/mkl"}, "impi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"impi/2019.9.304-iccifort-2020.1.217": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "impi/2019.9.304-iccifort-2020.4.304": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "impi/2021.4.0-intel-compilers-2021.4.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "impi/2021.6.0-intel-compilers-2022.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "impi/2021.7.1-intel-compilers-2022.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "impi/2021.9.0-intel-compilers-2023.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "impi/2019.7.217-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik"]}, "impi/2019.7.217-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "impi/2019.9.304-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "impi/2021.2.0-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "impi/2019.7.217-iccifortcuda-2020a": {"clusters": ["joltik"]}, "impi/2019.9.304-iccifortcuda-2020b": {"clusters": ["joltik"]}}, "description": "Intel MPI Library, compatible with MPICH ABI", "homepage": "https://software.intel.com/en-us/intel-mpi-library/"}, "imutils": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"imutils/0.5.4-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "imutils/0.5.4-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}}, "description": "A series of convenience functions to make basic image processing operations such as translation,rotation, resizing, skeletonization, and displaying Matplotlib images easier with OpenCV and Python.", "homepage": "https://github.com/jrosebr1/imutils"}, "inferCNV": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"inferCNV/1.3.3-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "inferCNV/1.12.0-foss-2021b-R-4.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "infercnv-1.12.0, parallelDist-0.2.6, phyclust-0.1-30"}, "inferCNV/1.12.0-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "infercnv-1.12.0, phyclust-0.1-33"}}, "description": "InferCNV is used to explore tumor single cell RNA-Seq data to identify evidence for somatic large-scale chromosomal copy number alterations, such as gains or deletions of entire chromosomes or large segments of chromosomes.", "homepage": "https://github.com/broadinstitute/inferCNV/wiki"}, "infercnvpy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"infercnvpy/0.4.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "gtfparse-1.2.1, infercnvpy-0.4.0, pyreadr-0.4.7, session_info-1.0.0, setuptools-65.6.0, tqdm-4.64.1"}, "infercnvpy/0.4.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "gtfparse-2.0.1, infercnvpy-0.4.2, pyreadr-0.4.7, session-info-1.0.0, setuptools-67.6.1"}}, "description": "Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.", "homepage": "https://github.com/icbi-lab/infercnvpy"}, "Inferelator": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Inferelator/0.6.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.8.0, inferelator-0.6.1, natsort-8.2.0"}}, "description": "Inferelator 3.0 is a package for gene regulatory network inference that is based on regularized regression.", "homepage": "https://github.com/flatironinstitute/inferelator"}, "Infernal": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Infernal/1.1.4-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Infernal (\"INFERence of RNA ALignment\") is for searching DNA sequence databases for RNA structure and sequence similarities.", "homepage": "http://eddylab.org/infernal/"}, "inflection": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"inflection/1.3.5-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "inflection is a package that finds the inflection point of a planar curve which is given as a data frame of discrete (xi,yi) points", "homepage": "https://github.com/dchristop/inflection"}, "intel-compilers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"intel-compilers/2021.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intel-compilers/2021.4.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intel-compilers/2022.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intel-compilers/2022.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intel-compilers/2023.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Intel C, C++ & Fortran compilers (classic and oneAPI)", "homepage": "https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html"}, "intel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"intel/2020a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intel/2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intel/2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intel/2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intel/2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intel/2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "intel/2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "intel/2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).", "homepage": "https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain"}, "InterProScan": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"InterProScan/5.62-94.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "InterProScan/5.52-86.0-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines different protein signature recognition methods into one resource.", "homepage": "https://www.ebi.ac.uk/interpro/"}, "intervaltree-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"intervaltree-python/3.1.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "intervaltree-python/3.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "intervaltree-python/3.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.", "homepage": "https://github.com/chaimleib/intervaltree"}, "intervaltree": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"intervaltree/0.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intervaltree/0.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "An interval tree can be used to efficiently find a set of numeric intervals overlapping or containing another interval. This library provides a basic implementation of an interval tree using C++ templates, allowing the insertion of arbitrary types into the tree.", "homepage": "https://github.com/ekg/intervaltree"}, "intltool": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"intltool/0.51.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "intltool/0.51.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intltool/0.51.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intltool/0.51.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intltool/0.51.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intltool/0.51.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intltool/0.51.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intltool/0.51.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "intltool/0.51.0-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.", "homepage": "http://freedesktop.org/wiki/Software/intltool/"}, "iodata": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"iodata/1.0.0a2-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python library for reading, writing, and converting computational chemistry file formats and generating input files.", "homepage": "https://github.com/theochem/iodata"}, "iomkl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"iomkl/2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iomkl/2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iomkl/2020a": {"clusters": ["doduo"]}}, "description": "Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.", "homepage": "https://software.intel.com/en-us/intel-cluster-toolkit-compiler/"}, "iompi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"iompi/2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iompi/2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "iompi/2020a": {"clusters": ["doduo"]}}, "description": "Intel C/C++ and Fortran compilers, alongside Open MPI.", "homepage": "https://software.intel.com/en-us/intel-cluster-toolkit-compiler/"}, "IonQuant": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"IonQuant/1.10.12-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "IonQuant is a fast and comprehensive tool for MS1 precursor intensity-based quantification for timsTOF PASEF DDA and non-timsTOF (e.g., Orbitrap) data. It enables label-free quantification with false discovery (FDR) controlled match-between-runs (MBR). It can also be used for quantification in labelling-based experiments such as those involving SILAC, dimethyl, or similar labelling strategies. IonQuant is available as part of FragPipe.", "homepage": "https://ionquant.nesvilab.org/"}, "IPython": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"IPython/7.15.0-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "backcall-0.1.0, bleach-3.1.5, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.3.0, ipython-7.15.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.17.0, jsonschema-3.2.0, jupyter_client-6.1.3, jupyter_contrib_core-0.3.3, jupyter_core-4.6.3, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-5.0.6, notebook-6.0.3, pandocfilters-1.4.2, parso-0.7.0, pexpect-4.8.0, pickleshare-0.7.5, prometheus_client-0.8.0, prompt_toolkit-3.0.5, ptyprocess-0.6.0, pyrsistent-0.16.0, pyzmq-19.0.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.4, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.9, webencodings-0.5.1, widgetsnbextension-3.5.1"}, "IPython/7.18.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argon2-cffi-20.1.0, async_generator-1.10, backcall-0.2.0, bleach-3.2.1, defusedxml-0.6.0, entrypoints-0.3, ipykernel-5.3.4, ipython-7.18.1, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.17.2, jupyter_client-6.1.7, jupyter_core-4.6.3, jupyterlab_pygments-0.1.2, mistune-0.8.4, nbclient-0.5.0, nbconvert-6.0.7, nbformat-5.0.7, nest_asyncio-1.4.1, notebook-6.1.4, pandocfilters-1.4.2, parso-0.7.1, pickleshare-0.7.5, prometheus_client-0.8.0, prompt_toolkit-3.0.7, pyzmq-19.0.2, Send2Trash-1.5.0, terminado-0.9.1, testpath-0.4.4, tornado-6.0.4, traitlets-5.0.4, widgetsnbextension-3.5.1"}, "IPython/7.25.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argon2-cffi-20.1.0, async_generator-1.10, backcall-0.2.0, bleach-3.3.0, debugpy-1.3.0, defusedxml-0.7.1, deprecation-2.1.0, entrypoints-0.3, ipykernel-6.0.0, ipython-7.25.0, ipython_genutils-0.2.0, ipywidgets-7.6.3, jedi-0.18.0, jupyter_client-6.1.12, jupyter_core-4.7.1, jupyter_packaging-0.10.3, jupyterlab_pygments-0.1.2, jupyterlab_widgets-1.0.0, matplotlib-inline-0.1.2, mistune-0.8.4, nbclient-0.5.3, nbconvert-6.4.0, nbformat-5.1.3, nest_asyncio-1.5.1, notebook-6.4.0, pandocfilters-1.4.3, parso-0.8.2, pickleshare-0.7.5, prometheus_client-0.11.0, prompt_toolkit-3.0.19, pyzmq-22.1.0, Send2Trash-1.7.1, terminado-0.10.1, testpath-0.5.0, tornado-6.1, traitlets-5.0.5, widgetsnbextension-3.5.1"}, "IPython/7.26.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argon2-cffi-20.1.0, async_generator-1.10, backcall-0.2.0, bleach-4.0.0, debugpy-1.4.1, defusedxml-0.7.1, deprecation-2.1.0, entrypoints-0.3, ipykernel-6.0.3, ipython-7.26.0, ipython_genutils-0.2.0, ipywidgets-7.6.3, jedi-0.18.0, jupyter_client-6.1.12, jupyter_core-4.7.1, jupyter_packaging-0.10.4, jupyterlab_pygments-0.1.2, jupyterlab_widgets-1.0.0, matplotlib-inline-0.1.2, mistune-0.8.4, nbclient-0.5.3, nbconvert-6.4.0, nbformat-5.1.3, nest_asyncio-1.5.1, notebook-6.4.0, pandocfilters-1.4.3, parso-0.8.2, pickleshare-0.7.5, prometheus_client-0.11.0, prompt_toolkit-3.0.19, pyzmq-22.2.1, Send2Trash-1.8.0, terminado-0.10.1, testpath-0.5.0, tornado-6.1, traitlets-5.0.5, widgetsnbextension-3.5.1"}, "IPython/8.5.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argon2-cffi-20.1.0, asttokens-2.0.8, async_generator-1.10, backcall-0.2.0, bleach-5.0.1, debugpy-1.4.1, defusedxml-0.7.1, deprecation-2.1.0, entrypoints-0.4, executing-1.0.0, fastjsonschema-2.16.1, ipykernel-6.13.0, ipython-8.5.0, ipython_genutils-0.2.0, ipywidgets-7.6.3, jedi-0.18.1, jupyter_client-7.3.1, jupyter_core-4.10.0, jupyter_packaging-0.12.0, jupyterlab_pygments-0.1.2, jupyterlab_widgets-3.0.3, matplotlib-inline-0.1.2, mistune-0.8.1, nbclient-0.6.3, nbconvert-6.5.3, nbformat-5.4.0, nest_asyncio-1.5.5, notebook-6.4.0, pandocfilters-1.5.0, parso-0.8.3, pickleshare-0.7.5, prometheus_client-0.11.0, prompt_toolkit-3.0.31, pure_eval-0.2.2, pyzmq-23.2.1, Send2Trash-1.8.0, stack_data-0.5.0, terminado-0.13.0, testpath-0.6.0, tinycss2-1.1.1, tornado-6.2, traitlets-5.2.0, widgetsnbextension-3.5.1"}, "IPython/8.14.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "asttokens-2.2.1, backcall-0.2.0, executing-1.2.0, ipython-8.14.0, jedi-0.18.2, matplotlib-inline-0.1.6, parso-0.8.3, pickleshare-0.7.5, prompt_toolkit-3.0.39, pure_eval-0.2.2, stack_data-0.6.2, traitlets-5.9.0"}, "IPython/8.14.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "%(namelower)s-%(version)s, asttokens-2.2.1, backcall-0.2.0, executing-1.2.0, jedi-0.19.0, matplotlib-inline-0.1.6, parso-0.8.3, pickleshare-0.7.5, prompt_toolkit-3.0.39, pure_eval-0.2.2, stack_data-0.6.2, traitlets-5.9.0"}, "IPython/7.9.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "backcall-0.1.0, bleach-3.1.0, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.1.3, ipython-7.9.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.15.1, jsonschema-3.1.1, jupyter_client-5.3.4, jupyter_contrib_core-0.3.3, jupyter_core-4.6.1, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-4.4.0, notebook-6.0.2, pandocfilters-1.4.2, parso-0.5.1, pexpect-4.7.0, pickleshare-0.7.5, prometheus_client-0.7.1, prompt_toolkit-2.0.10, ptyprocess-0.6.0, pyrsistent-0.15.5, pyzmq-18.1.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.3, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.7, webencodings-0.5.1, widgetsnbextension-3.5.1"}, "IPython/7.9.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "backcall-0.1.0, bleach-3.1.0, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.1.3, ipython-7.9.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.15.1, jsonschema-3.1.1, jupyter_client-5.3.4, jupyter_contrib_core-0.3.3, jupyter_core-4.6.1, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-4.4.0, notebook-6.0.2, pandocfilters-1.4.2, parso-0.5.1, pexpect-4.7.0, pickleshare-0.7.5, prometheus_client-0.7.1, prompt_toolkit-2.0.10, ptyprocess-0.6.0, pyrsistent-0.15.5, pyzmq-18.1.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.3, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.7, webencodings-0.5.1, widgetsnbextension-3.5.1"}, "IPython/7.15.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "backcall-0.1.0, bleach-3.1.5, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.3.0, ipython-7.15.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.17.0, jsonschema-3.2.0, jupyter_client-6.1.3, jupyter_contrib_core-0.3.3, jupyter_core-4.6.3, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-5.0.6, notebook-6.0.3, pandocfilters-1.4.2, parso-0.7.0, pexpect-4.8.0, pickleshare-0.7.5, prometheus_client-0.8.0, prompt_toolkit-3.0.5, ptyprocess-0.6.0, pyrsistent-0.16.0, pyzmq-19.0.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.4, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.9, webencodings-0.5.1, widgetsnbextension-3.5.1"}}, "description": "IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.", "homepage": "https://ipython.org/index.html"}, "IQ-TREE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"IQ-TREE/2.2.1-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "IQ-TREE/2.2.2.3-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "IQ-TREE/2.2.2.6-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "IQ-TREE/2.2.2.6-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "IQ-TREE/1.6.12-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Efficient phylogenomic software by maximum likelihood", "homepage": "http://www.iqtree.org/"}, "ISA-L": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ISA-L/2.30.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ISA-L/2.30.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ISA-L/2.30.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ISA-L/2.30.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Intelligent Storage Acceleration Library", "homepage": "https://github.com/intel/isa-l"}, "IsoQuant": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"IsoQuant/3.3.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "IsoQuant is a tool for the genome-based analysis of long RNA reads, such as PacBio or Oxford Nanopores. IsoQuant allows to reconstruct and quantify transcript models with high precision and decent recall. If the reference annotation is given, IsoQuant also assigns reads to the annotated isoforms based on their intron and exon structure. IsoQuant further performs annotated gene, isoform, exon and intron quantification. If reads are grouped (e.g. according to cell type), counts are reported according to the provided grouping.", "homepage": "https://github.com/ablab/IsoQuant"}, "IsoSeq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"IsoSeq/3.8.2-linux-x86_64": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "IsoSeq/4.0.0-linux-x86_64": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "IsoSeq v3 contains the newest tools to identify transcripts in PacBio single-molecule sequencing data. Starting in SMRT Link v6.0.0, those tools power the IsoSeq GUI-based analysis application. A composable workflow of existing tools and algorithms, combined with a new clustering technique, allows to process the ever-increasing yield of PacBio machines with similar performance to IsoSeq versions 1 and 2. Starting with version 3.4, support for UMI and cell barcode based deduplication has been added.", "homepage": "https://github.com/PacificBiosciences/ioseq3"}, "ITK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ITK/5.2.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ITK/5.2.1-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "ITK/4.13.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ITK/5.0.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ITK/5.2.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "ITK/5.1.2-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "Insight Segmentation and Registration Toolkit (ITK) provides an extensive suite of software tools for registering and segmenting multidimensional imaging data.", "homepage": "https://itk.org"}, "JAGS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"JAGS/4.3.0-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JAGS/4.3.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "JAGS/4.3.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JAGS/4.3.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation", "homepage": "http://mcmc-jags.sourceforge.net/"}, "Jansson": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Jansson/2.13.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Jansson is a C library for encoding, decoding and manipulating JSON data. Its main features and design principles are: * Simple and intuitive API and data model * Comprehensive documentation * No dependencies on other libraries * Full Unicode support (UTF-8) * Extensive test suite", "homepage": "https://www.digip.org/jansson/"}, "JasPer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"JasPer/2.0.14-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "JasPer/2.0.24-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JasPer/2.0.28-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JasPer/2.0.33-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JasPer/2.0.33-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JasPer/4.0.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JasPer/4.0.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JasPer/2.0.14-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.", "homepage": "https://www.ece.uvic.ca/~frodo/jasper/"}, "Java": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Java/1.8(@Java/1.8.0_311)": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"]}, "Java/1.8.0_311": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"]}, "Java/11.0.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Java/11.0.16": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Java/11.0.18": {"clusters": ["accelgor", "gallade", "joltik"]}, "Java/11(@Java/11.0.20)": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Java/11.0.20": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Java/17(@Java/17.0.6)": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Java/17.0.6": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Java/1.8.0_221": {"clusters": ["doduo"]}, "Java/1.8(@Java/1.8.0_241)": {"clusters": ["doduo"]}, "Java/1.8.0_241": {"clusters": ["doduo"]}, "Java/13(@Java/13.0.2)": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Java/13.0.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}}, "jax": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"jax/0.2.19-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "jax-0.2.19, opt_einsum-3.3.0"}, "jax/0.2.19-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "jax-0.2.19, opt_einsum-3.3.0"}, "jax/0.2.24-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "jax-0.2.24, opt_einsum-3.3.0"}, "jax/0.3.9-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "jax-0.3.9, opt_einsum-3.3.0"}, "jax/0.3.9-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "jax-0.3.9, opt_einsum-3.3.0"}, "jax/0.3.23-foss-2021b-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"], "extensions": "etils-0.8.0, jax-0.3.23, opt_einsum-3.3.0"}, "jax/0.3.25-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "etils-0.8.0, jax-0.3.25, opt_einsum-3.3.0"}, "jax/0.3.25-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "etils-0.8.0, jax-0.3.25, opt_einsum-3.3.0"}, "jax/0.2.24-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "jax-0.2.24, opt_einsum-3.3.0"}}, "description": "Composable transformations of Python+NumPy programs:differentiate, vectorize, JIT to GPU/TPU, and more", "homepage": "https://pypi.python.org/pypi/jax"}, "jbigkit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"jbigkit/2.1-GCCcore-10.2.0": {"clusters": ["accelgor", "donphan", "gallade", "joltik", "skitty"]}, "jbigkit/2.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "jbigkit/2.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "jbigkit/2.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "jbigkit/2.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "jbigkit/2.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "jbigkit/2.1-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "jbigkit/2.1-GCCcore-9.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.", "homepage": "https://www.cl.cam.ac.uk/~mgk25/jbigkit/"}, "Jellyfish": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Jellyfish/2.3.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Jellyfish/2.3.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.", "homepage": "http://www.genome.umd.edu/jellyfish.html"}, "jemalloc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"jemalloc/5.2.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "jemalloc/5.2.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "jemalloc/5.2.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "jemalloc/5.3.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "jemalloc/5.2.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "jemalloc/5.2.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.", "homepage": "http://jemalloc.net"}, "json-c": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"json-c/0.16-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "json-c/0.16-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "json-c/0.15-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "json-c/0.15-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSONobjects.", "homepage": "https://github.com/json-c/json-c"}, "JsonCpp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"JsonCpp/1.9.4-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JsonCpp/1.9.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JsonCpp/1.9.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JsonCpp/1.9.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JsonCpp/1.9.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JsonCpp/1.9.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JsonCpp/1.9.3-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "JsonCpp/1.9.4-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.", "homepage": "https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html"}, "Judy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Judy/1.0.5-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Judy/1.0.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Judy/1.0.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Judy/1.0.5-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Judy/1.0.5-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A C library that implements a dynamic array.", "homepage": "http://judy.sourceforge.net/"}, "Julia": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Julia/1.7.2-linux-x86_64": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Julia/1.9.3-linux-x86_64": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Julia/1.6.2-linux-x86_64": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Julia is a high-level, high-performance dynamic programming language for numerical computing", "homepage": "https://julialang.org"}, "jupyter-contrib-nbextensions": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"jupyter-contrib-nbextensions/0.7.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "jupyter_contrib_core-0.4.2, jupyter_contrib_nbextensions-0.7.0, jupyter_highlight_selected_word-0.2.0, jupyter_nbextensions_configurator-0.6.1"}}, "description": "A collection of various notebook extensions for Jupyter", "homepage": "https://github.com/ipython-contrib/jupyter_contrib_nbextensions"}, "jupyter-server-proxy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"jupyter-server-proxy/3.2.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "jupyter-server-proxy-3.2.2, simpervisor-0.4"}}, "description": "Jupyter Server Proxy lets you run arbitrary external processes(such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc)alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the pythonpackage that provides the main functionality, the JupyterLab extension(@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher windowto get to RStudio for example.", "homepage": "https://github.com/jupyterhub/jupyter-server-proxy"}, "jupyter-server": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"jupyter-server/1.21.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anyio-3.6.1, jupyter_server-1.21.0, nbclassic-0.4.8, notebook_shim-0.1.0, sniffio-1.3.0, websocket-client-1.4.2"}, "jupyter-server/2.7.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anyio-3.7.1, argon2-cffi-21.3.0, argon2-cffi-bindings-21.2.0, arrow-1.2.3, bleach-6.0.0, comm-0.1.3, debugpy-1.6.7, defusedxml-0.7.1, deprecation-2.1.0, fastjsonschema-2.17.1, hatch_jupyter_builder-0.8.3, hatch_nodejs_version-0.3.1, ipykernel-6.25.0, ipython_genutils-0.2.0, ipywidgets-8.0.7, jupyter_client-8.3.0, jupyter_core-5.3.1, jupyter_events-0.6.3, jupyter_packaging-0.12.3, jupyter_server-2.7.0, jupyter_server_terminals-0.4.4, jupyterlab_pygments-0.2.2, jupyterlab_widgets-3.0.8, mistune-3.0.1, nbclassic-1.0.0, nbclient-0.8.0, nbconvert-7.7.2, nbformat-5.9.1, nest_asyncio-1.5.7, notebook_shim-0.2.3, overrides-7.3.1, pandocfilters-1.5.0, prometheus_client-0.17.1, python-json-logger-2.0.7, pyzmq-25.1.0, rfc3339_validator-0.1.4, rfc3986_validator-0.1.1, Send2Trash-1.8.2, sniffio-1.3.0, terminado-0.17.1, tinycss2-1.2.1, tornado-6.3.2, websocket-client-1.6.1, widgetsnbextension-4.0.8"}, "jupyter-server/2.7.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anyio-3.7.1, argon2-cffi-bindings-21.2.0, argon2_cffi-23.1.0, arrow-1.2.3, bleach-6.0.0, comm-0.1.4, debugpy-1.6.7.post1, defusedxml-0.7.1, deprecation-2.1.0, fastjsonschema-2.18.0, hatch_jupyter_builder-0.8.3, hatch_nodejs_version-0.3.1, ipykernel-6.25.1, ipython_genutils-0.2.0, ipywidgets-8.1.0, jsonschema-4.18.0, jsonschema_specifications-2023.7.1, jupyter_client-8.3.0, jupyter_core-5.3.1, jupyter_events-0.7.0, jupyter_packaging-0.12.3, jupyter_server-2.7.2, jupyter_server_terminals-0.4.4, jupyterlab_pygments-0.2.2, jupyterlab_widgets-3.0.8, mistune-3.0.1, nbclient-0.8.0, nbconvert-7.7.4, nbformat-5.9.2, nest_asyncio-1.5.7, notebook_shim-0.2.3, overrides-7.4.0, pandocfilters-1.5.0, prometheus_client-0.17.1, python-json-logger-2.0.7, referencing-0.30.2, rfc3339_validator-0.1.4, rfc3986_validator-0.1.1, rpds_py-0.9.2, Send2Trash-1.8.2, sniffio-1.3.0, terminado-0.17.1, tinycss2-1.2.1, websocket-client-1.6.1, widgetsnbextension-4.0.8"}}, "description": "The Jupyter Server provides the backend (i.e. the core services, APIs, and RESTendpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, andVoila.", "homepage": "https://jupyter.org/"}, "JupyterHub": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"JupyterHub/4.0.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alembic-1.11.1, async_generator-1.10, batchspawner-1.2.0-2a9eda0, certipy-0.1.3, greenlet-2.0.2, jupyter-telemetry-0.1.0, jupyterhub-4.0.1, jupyterhub-jwtauthenticator-v2-2.0.3, jupyterhub-ldapauthenticator-1.3.2, jupyterhub-nativeauthenticator-1.2.0, jupyterhub-simplespawner-0.1, jupyterhub-systemdspawner-1.0.1, ldap3-2.9.1, oauthlib-3.2.2, onetimepass-1.0.1, pamela-1.1.0, PyJWT-2.8.0, pyOpenSSL-23.2.0, ruamel.yaml-0.17.32, ruamel.yaml.clib-0.2.7, SQLAlchemy-2.0.19"}}, "description": "JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs.", "homepage": "https://jupyter.org"}, "JupyterLab": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"JupyterLab/2.2.8-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "json5-0.9.5, JupyterLab-2.2.8, jupyterlab_server-1.2.0"}, "JupyterLab/3.0.16-GCCcore-10.3.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "anyio-3.2.1, json5-0.9.6, jupyter_server-1.9.0, JupyterLab-3.0.16, jupyterlab_server-2.6.0, nbclassic-0.3.1, requests-unixsocket-0.2.0, sniffio-1.2.0, websocket-client-1.1.0"}, "JupyterLab/3.1.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "anyio-3.3.0, json5-0.9.6, jupyter_server-1.10.2, JupyterLab-3.1.6, jupyterlab_server-2.7.0, nbclassic-0.3.1, requests-unixsocket-0.2.0, sniffio-1.2.0, websocket-client-1.2.0"}, "JupyterLab/3.5.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "json5-0.9.10, jupyterlab-3.5.0, jupyterlab_server-2.13.0, nbclassic-0.4.8, notebook_shim-0.1.0"}, "JupyterLab/4.0.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "async-lru-2.0.3, attrs-23.1.0, hatchling-1.18.0, json5-0.9.14, jsonschema-4.18.4, jsonschema_specifications-2023.7.1, jupyter-lsp-2.2.0, jupyterlab-4.0.3, jupyterlab_server-2.23.0, referencing-0.30.0, rpds_py-0.9.2, trove-classifiers-2023.7.6"}, "JupyterLab/4.0.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "async-lru-2.0.4, json5-0.9.14, jupyter-lsp-2.2.0, jupyterlab-4.0.5, jupyterlab_server-2.24.0"}, "JupyterLab/1.2.5-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "json5-0.8.5, JupyterLab-1.2.5, jupyterlab_server-1.0.6"}}, "description": "JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.", "homepage": "https://jupyter.org/"}, "JupyterNotebook": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"JupyterNotebook/6.0.3-intel-2020a-Python-3.8.2-IPython-7.15.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JupyterNotebook/6.1.4-GCCcore-10.2.0-IPython-7.18.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JupyterNotebook/6.4.0-GCCcore-10.3.0-IPython-7.25.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JupyterNotebook/6.4.0-GCCcore-11.2.0-IPython-7.26.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JupyterNotebook/6.4.0-GCCcore-11.3.0-IPython-8.5.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JupyterNotebook/6.4.12-SAGE-9.8": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JupyterNotebook/6.4.12-SAGE-10.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JupyterNotebook/6.4.12-SAGE-10.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JupyterNotebook/7.0.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JupyterNotebook/7.0.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "JupyterNotebook/6.0.2-foss-2019b-Python-3.7.4-IPython-7.9.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "JupyterNotebook/6.0.2-intel-2019b-Python-3.7.4-IPython-7.9.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "JupyterNotebook/6.0.3-foss-2020a-Python-3.8.2-IPython-7.15.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience.", "homepage": "https://jupyter.org/"}, "jxrlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"jxrlib/1.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Open source implementation of jpegxr", "homepage": "https://github.com/4creators/jxrlib"}, "Kalign": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Kalign/3.3.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Kalign/3.3.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Kalign/3.3.2-GCCcore-11.2.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "Kalign/3.3.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Kalign is a fast multiple sequence alignment program for biological sequences.", "homepage": "https://github.com/TimoLassmann/kalign"}, "kallisto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"kallisto/0.48.0-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "kallisto/0.46.1-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "kallisto/0.46.1-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "kallisto/0.46.1-iimpi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "kallisto/0.46.1-intel-2020a": {"clusters": ["doduo"]}}, "description": "kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.", "homepage": "https://pachterlab.github.io/kallisto/"}, "kb-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"kb-python/0.27.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "kb-python-0.27.3, ngs-tools-1.8.3, plotly-5.15.0, shortuuid-1.0.11, tenacity-8.2.2"}}, "description": "kallisto | bustools is a workflow for pre-processing single-cell RNA-seq data. Pre-processing single-cell RNA-seq involves: (1) association of reads with their cells of origin, (2) collapsing of reads according to unique molecular identifiers (UMIs), and (3) generation of gene or feature counts from the reads to generate a cell x gene matrix.", "homepage": "https://www.kallistobus.tools/"}, "Kent_tools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Kent_tools/422-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Kent_tools/401-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Kent_tools/411-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Kent_tools/20190326-linux.x86_64": {"clusters": ["donphan", "joltik"]}}, "description": "Kent tools: collection of tools used by the UCSC genome browser.", "homepage": "http://genome.cse.ucsc.edu/"}, "Keras": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Keras/2.4.3-fosscuda-2020b-TensorFlow-2.5.0": {"clusters": ["accelgor", "joltik"], "extensions": "Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2"}, "Keras/2.4.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2"}, "Keras/2.4.3-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2"}}, "description": "Keras is a deep learning API written in Python, running on top of the machine learning platform TensorFlow.", "homepage": "https://keras.io/"}, "KerasTuner": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"KerasTuner/1.3.5-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "keras-tuner-1.3.5, kt-legacy-1.0.5"}}, "description": "KerasTuner is an easy-to-use, scalable hyperparameter optimization framework that solves the painpoints of hyperparameter search.", "homepage": "https://keras.io/keras_tuner"}, "kim-api": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"kim-api/2.3.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "kim-api/2.1.3-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "kim-api/2.1.3-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "kim-api/2.1.3-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "kim-api/2.2.1-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Open Knowledgebase of Interatomic Models.KIM is an API and OpenKIM is a collection of interatomic models (potentials) foratomistic simulations. This is a library that can be used by simulation programsto get access to the models in the OpenKIM database.This EasyBuild only installs the API, the models can be installed with thepackage openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAMEor kim-api-collections-management install user OpenKIMto install them all.", "homepage": "https://openkim.org/"}, "kineto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"kineto/0.4.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A CPU+GPU Profiling library that provides access to timeline traces and hardware performance counters", "homepage": "https://github.com/pytorch/kineto"}, "KMC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"KMC/3.2.1-GCC-11.2.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "KMC/3.2.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "KMC/3.1.2rc1-GCC-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "KMC is a disk-based programm for counting k-mers from (possibly gzipped) FASTQ/FASTA files.", "homepage": "http://sun.aei.polsl.pl/kmc"}, "kneaddata": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"kneaddata/0.12.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "kneaddata-0.12.0"}}, "description": "KneadData is a tool designed to perform quality control on metagenomic andmetatranscriptomic sequencing data, especially data from microbiome experiments.", "homepage": "http://huttenhower.sph.harvard.edu/kneaddata"}, "KrakenUniq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"KrakenUniq/1.0.3-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "KrakenUniq: confident and fast metagenomics classification using unique k-mer counts", "homepage": "https://github.com/fbreitwieser/krakenuniq/"}, "krbalancing": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"krbalancing/0.5.0b0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "krbalancing-0.5.0b0"}}, "description": "A C++ extension for Python which computes K.R. balanced matrices.", "homepage": "https://github.com/deeptools/Knight-Ruiz-Matrix-balancing-algorithm"}, "KronaTools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"KronaTools/2.8.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "KronaTools/2.8.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "KronaTools/2.8-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.", "homepage": "https://github.com/marbl/Krona/wiki/KronaTools"}, "L_RNA_scaffolder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"L_RNA_scaffolder/20190530-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "L_RNA_scaffolder is a genome scaffolding tool with long trancriptome reads", "homepage": "https://github.com/CAFS-bioinformatics/L_RNA_scaffolder"}, "Lace": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Lace/1.14.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Building SuperTranscripts: A linear representation of transcriptome data", "homepage": "https://github.com/Oshlack/Lace"}, "LAME": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LAME/3.100-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "LAME/3.100-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LAME/3.100-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.", "homepage": "http://lame.sourceforge.net/"}, "LAMMPS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"LAMMPS/23Jun2022-foss-2021b-kokkos-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"]}, "LAMMPS/23Jun2022-foss-2021b-kokkos": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/patch_20Nov2019-intel-2019b": {"clusters": ["doduo"]}, "LAMMPS/3Mar2020-foss-2019b-Python-3.7.4-kokkos": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/3Mar2020-intel-2019b-Python-3.7.4-kokkos": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/3Mar2020-intel-2020a-Python-3.8.2-kokkos": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/7Aug2019-foss-2019b-Python-3.7.4-kokkos": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/7Aug2019-intel-2019b-Python-3.7.4-kokkos-OCTP": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/23Jun2022-foss-2021a-kokkos": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAMMPS/7Aug2019-intel-2019b-Python-3.7.4-kokkos": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "LAMMPS is a classical molecular dynamics code, and an acronymfor Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS haspotentials for solid-state materials (metals, semiconductors) and soft matter(biomolecules, polymers) and coarse-grained or mesoscopic systems. It can beused to model atoms or, more generically, as a parallel particle simulator atthe atomic, meso, or continuum scale. LAMMPS runs on single processors or inparallel using message-passing techniques and a spatial-decomposition of thesimulation domain. The code is designed to be easy to modify or extend with newfunctionality.", "homepage": "https://lammps.sandia.gov/"}, "LASTZ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LASTZ/1.04.22-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LASTZ/1.04.03-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.", "homepage": "https://www.bx.psu.edu/~rsharris/lastz/"}, "LDC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LDC/1.24.0-x86_64": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LDC/1.30.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LDC/0.17.6-x86_64": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "LDC/1.25.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The LLVM-based D Compiler", "homepage": "https://wiki.dlang.org/LDC"}, "leafcutter": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"leafcutter/0.2.9-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Leafcutter quantifies RNA splicing variation using short-read RNA-seq data. The core idea is to leverage spliced reads (reads that span an intron) to quantify (differential) intron usage across samples. The advantages of this approach include: easy detection of novel introns, modeling of more complex splicing events than exonic PSI, avoiding the challenge of isoform abundance estimation, simple, computationally efficient algorithms scaling to 100s or even 1000s of samples. For details please see our bioRxiv preprint and corresponding Nature Genetics publication.", "homepage": "http://davidaknowles.github.io/leafcutter/index.html"}, "leidenalg": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"leidenalg/0.8.7-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ddt-1.4.2, leidenalg-0.8.7"}, "leidenalg/0.8.8-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ddt-1.4.4, leidenalg-0.8.8"}, "leidenalg/0.9.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ddt-1.6.0, leidenalg-0.9.1"}, "leidenalg/0.10.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ddt-1.7.2, leidenalg-0.10.2"}, "leidenalg/0.8.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "ddt-1.4.1, leidenalg-0.8.2"}, "leidenalg/0.8.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ddt-1.4.2, leidenalg-0.8.3"}, "leidenalg/0.8.3-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "ddt-1.4.2, leidenalg-0.8.3"}}, "description": "Implementation of the Leiden algorithm for various qualityfunctions to be used with igraph in Python.", "homepage": "https://github.com/vtraag/leidenalg"}, "LERC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LERC/4.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LERC/4.0.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LERC/4.0.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "LERC is an open-source image or raster format which supports rapid encoding and decodingfor any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding,so the precision of the original input image is preserved (within user defined error bounds).", "homepage": "https://github.com/Esri/lerc"}, "LevelDB": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LevelDB/1.22-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "leveldb-0.201"}}, "description": "LevelDB is a fast key-value storage library written at Google that provides anordered mapping from string keys to string values.", "homepage": "https://github.com/google/leveldb"}, "Levenshtein": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Levenshtein/0.24.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Levenshtein-0.24.0, rapidfuzz-3.6.1"}}, "description": "Python extension for computing string edit distances and similarities.", "homepage": "https://pypi.org/project/python-Levenshtein/"}, "lftp": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"lftp/4.9.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "LFTP is a sophisticated ftp/http client, and a file transfer program supportinga number of network protocols. Like BASH, it has job control and uses the readline library forinput. It has bookmarks, a built-in mirror command, and can transfer several files in parallel.It was designed with reliability in mind.", "homepage": "https://lftp.yar.ru"}, "LIANA+": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"], "versions": {"LIANA+/1.0.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"], "extensions": "liana-1.0.1, mizani-0.9.3, mudata-0.2.3, plotnine-0.10.1"}}, "description": "LIANA+ is a scalable framework that integrates and extends existing methods and knowledge to studycell-cell communication in single-cell, spatially-resolved, and multi-modal omics data.", "homepage": "https://liana-py.readthedocs.io"}, "libaec": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libaec/1.0.6-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers(samples). The library achieves best results for low entropy data as often encountered in space imaginginstrument data or numerical model output from weather or climate simulations. While floating point representationsare not directly supported, they can also be efficiently coded by grouping exponents and mantissa.", "homepage": "https://gitlab.dkrz.de/k202009/libaec"}, "libaio": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libaio/0.3.112-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libaio/0.3.112-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libaio/0.3.112-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libaio/0.3.113-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libaio/0.3.111-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libaio/0.3.112-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Asynchronous input/output library that uses the kernels native interface.", "homepage": "https://pagure.io/libaio"}, "libarchive": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libarchive/3.4.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libarchive/3.5.1-GCCcore-8.3.0": {"clusters": ["accelgor", "joltik"]}, "libarchive/3.5.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libarchive/3.5.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libarchive/3.6.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libarchive/3.6.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libarchive/3.6.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libarchive/3.7.2-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Multi-format archive and compression library", "homepage": "https://www.libarchive.org/"}, "libavif": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libavif/0.11.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "This library aims to be a friendly, portable C implementation of the AV1 Image File Format,as described here: https://aomediacodec.github.io/av1-avif/", "homepage": "https://github.com/AOMediaCodec/libavif"}, "libcerf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libcerf/1.13-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libcerf/1.14-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libcerf/1.17-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libcerf/1.17-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libcerf/2.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libcerf/2.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libcerf/1.13-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.", "homepage": "https://jugit.fz-juelich.de/mlz/libcerf"}, "libcint": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libcint/4.4.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libcint/4.4.0-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libcint/5.5.0-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libcint/5.1.6-foss-2022a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "libcint is an open source library for analytical Gaussian integrals.", "homepage": "https://github.com/sunqm/libcint"}, "libde265": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libde265/1.0.8-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libde265/1.0.11-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "libde265 is an open source implementation of the h.265 video codec", "homepage": "https://github.com/strukturag/libde265"}, "libdeflate": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libdeflate/1.8-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdeflate/1.10-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdeflate/1.15-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdeflate/1.18-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdeflate/1.19-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdeflate/1.7-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Heavily optimized library for DEFLATE/zlib/gzip compression and decompression.", "homepage": "https://github.com/ebiggers/libdeflate"}, "libdrm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libdrm/2.4.99-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libdrm/2.4.102-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdrm/2.4.106-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdrm/2.4.107-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdrm/2.4.110-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdrm/2.4.114-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdrm/2.4.115-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libdrm/2.4.97-GCCcore-8.2.0": {"clusters": ["doduo"]}, "libdrm/2.4.100-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Direct Rendering Manager runtime library.", "homepage": "https://dri.freedesktop.org"}, "libepoxy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libepoxy/1.5.4-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libepoxy/1.5.8-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libepoxy/1.5.8-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libepoxy/1.5.10-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libepoxy/1.5.10-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libepoxy/1.5.10-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libepoxy/1.5.4-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Epoxy is a library for handling OpenGL function pointer management for you", "homepage": "https://github.com/anholt/libepoxy"}, "libev": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libev/4.33-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and bugs. It is used in GNU Virtual Private Ethernet, rxvt-unicode, auditd, the Deliantra MORPG Server and Client, and many other programs.", "homepage": "http://software.schmorp.de/pkg/libev.html"}, "libevent": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libevent/2.1.11-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libevent/2.1.11-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libevent/2.1.12-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libevent/2.1.12-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libevent/2.1.12-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libevent/2.1.12-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libevent/2.1.12-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libevent/2.1.12-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libevent/2.1.12-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libevent/2.1.12": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.", "homepage": "https://libevent.org"}, "libfabric": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libfabric/1.11.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libfabric/1.12.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libfabric/1.13.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libfabric/1.15.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libfabric/1.16.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libfabric/1.18.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libfabric/1.19.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libfabric/1.11.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Libfabric is a core component of OFI. It is the library that defines and exportsthe user-space API of OFI, and is typically the only software that applicationsdeal with directly. It works in conjunction with provider libraries, which areoften integrated directly into libfabric.", "homepage": "https://ofiwg.github.io/libfabric/"}, "libffi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libffi/3.2.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libffi/3.3-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libffi/3.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libffi/3.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libffi/3.4.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libffi/3.4.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libffi/3.4.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libffi/3.4.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libffi/3.4.4-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libffi/3.2.1-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.", "homepage": "http://sourceware.org/libffi/"}, "libgcrypt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libgcrypt/1.9.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libgcrypt/1.9.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Libgcrypt is a general purpose cryptographic library originally based on code from GnuPG", "homepage": "https://gnupg.org/related_software/libgcrypt/index.html"}, "libgd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libgd/2.2.5-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libgd/2.3.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgd/2.3.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgd/2.3.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgd/2.3.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgd/2.3.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgd/2.3.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgd/2.3.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GD is an open source code library for the dynamic creation of images by programmers.", "homepage": "https://libgd.github.io/"}, "libgeotiff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libgeotiff/1.6.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgeotiff/1.7.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgeotiff/1.7.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgeotiff/1.7.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgeotiff/1.7.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgeotiff/1.5.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libgeotiff/1.5.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libgeotiff/1.6.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Library for reading and writing coordinate system information from/to GeoTIFF files", "homepage": "https://directory.fsf.org/wiki/Libgeotiff"}, "libgit2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libgit2/1.1.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgit2/1.1.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgit2/1.4.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgit2/1.5.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libgit2/1.7.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrantlinkable library with a solid API, allowing you to write native speed custom Git applications in any languagewhich supports C bindings.", "homepage": "https://libgit2.org/"}, "libGLU": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libGLU/9.0.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libGLU/9.0.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libGLU/9.0.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libGLU/9.0.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libGLU/9.0.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libGLU/9.0.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libGLU/9.0.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libGLU/9.0.0-GCCcore-8.2.0": {"clusters": ["doduo"]}, "libGLU/9.0.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.", "homepage": "https://mesa.freedesktop.org/archive/glu/"}, "libglvnd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libglvnd/1.3.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libglvnd/1.3.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libglvnd/1.3.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libglvnd/1.4.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libglvnd/1.6.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libglvnd/1.6.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libglvnd/1.2.0-GCCcore-8.2.0": {"clusters": ["doduo"]}, "libglvnd/1.2.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libglvnd/1.2.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.", "homepage": "https://github.com/NVIDIA/libglvnd"}, "libgpg-error": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libgpg-error/1.42-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libgpg-error/1.42-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Libgpg-error is a small library that defines common error values for all GnuPG components.", "homepage": "https://gnupg.org/related_software/libgpg-error/index.html"}, "libgpuarray": {"clusters": ["accelgor", "joltik"], "versions": {"libgpuarray/0.7.6-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "libgpuarray-0.7.6"}}, "description": "Library to manipulate tensors on the GPU.", "homepage": "http://deeplearning.net/software/libgpuarray/"}, "libharu": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"libharu/2.3.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libharu/2.3.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libharu/2.3.0-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "libHaru is a free, cross platform, open source library forgenerating PDF files.", "homepage": "https://github.com/libharu/libharu/"}, "libheif": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libheif/1.12.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libheif/1.16.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "libheif is an HEIF and AVIF file format decoder and encoder", "homepage": "https://github.com/strukturag/libheif"}, "libiconv": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libiconv/1.16-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libiconv/1.16-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libiconv/1.16-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libiconv/1.16-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libiconv/1.16-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libiconv/1.17-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libiconv/1.17-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libiconv/1.17-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libiconv/1.17-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Libiconv converts from one character encoding to another through Unicode conversion", "homepage": "https://www.gnu.org/software/libiconv"}, "libidn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libidn/1.38-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libidn/1.35-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libidn/1.36-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications.Libidn's purpose is to encode and decode internationalized domain names.", "homepage": "http://www.gnu.org/software/libidn"}, "libidn2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libidn2/2.3.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libidn2/2.3.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libidn2/2.3.0-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "libidn2/2.3.0-GCCcore-9.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications.Libidn's purpose is to encode and decode internationalized domain names.", "homepage": "https://www.gnu.org/software/libidn"}, "Libint": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Libint/2.7.2-GCC-11.3.0-lmax-6-cp2k": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Libint/2.7.2-GCC-12.2.0-lmax-6-cp2k": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Libint/2.7.2-GCC-12.3.0-lmax-6-cp2k": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Libint/1.1.6-foss-2020a": {"clusters": ["doduo"]}, "Libint/1.1.6-intel-2019b": {"clusters": ["doduo"]}, "Libint/1.1.6-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Libint/1.1.6-iomkl-2020a": {"clusters": ["doduo"]}, "Libint/2.6.0-GCC-10.2.0-lmax-6-cp2k": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Libint/2.6.0-GCC-10.3.0-lmax-6-cp2k": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Libint/2.6.0-gompi-2020a-lmax-6-cp2k": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Libint/2.6.0-gompi-2020b-lmax-6-cp2k": {"clusters": ["doduo"]}, "Libint/2.6.0-iccifort-2020.4.304-lmax-6-cp2k": {"clusters": ["doduo", "donphan", "joltik"]}, "Libint/2.6.0-iimpi-2020a-lmax-6-cp2k": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Libint/2.6.0-iimpi-2020b-lmax-6-cp2k": {"clusters": ["doduo"]}}, "description": "Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.", "homepage": "https://github.com/evaleev/libint"}, "libjpeg-turbo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libjpeg-turbo/2.0.3-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libjpeg-turbo/2.0.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libjpeg-turbo/2.0.6-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libjpeg-turbo/2.0.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libjpeg-turbo/2.1.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libjpeg-turbo/2.1.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libjpeg-turbo/2.1.5.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libjpeg-turbo/3.0.1-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libjpeg-turbo/2.0.2-GCCcore-8.2.0": {"clusters": ["doduo"]}, "libjpeg-turbo/2.0.4-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.", "homepage": "https://sourceforge.net/projects/libjpeg-turbo/"}, "libjxl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libjxl/0.8.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "JPEG XL image format reference implementation", "homepage": "https://github.com/libjxl/libjxl"}, "libleidenalg": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libleidenalg/0.11.1-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Implements the Leiden algorithm in C++", "homepage": "https://github.com/vtraag/libleidenalg"}, "LibLZF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LibLZF/3.6-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "LibLZF is a very small data compression library. It consists of only two .c and two .h filesand is very easy to incorporate into your own programs. The compression algorithm is very, very fast, yet stillwritten in portable C.", "homepage": "http://oldhome.schmorp.de/marc/liblzf.html"}, "libmad": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libmad/0.15.1b-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MAD is a high-quality MPEG audio decoder.", "homepage": "https://www.underbit.com/products/mad/"}, "libmaus2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libmaus2/2.0.499-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libmaus2/2.0.813-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "libmaus2 is a collection of data structures and algorithms.", "homepage": "https://github.com/gt1/libmaus2"}, "libobjcryst": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"libobjcryst/2021.1.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libobjcryst/2017.2.3-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libobjcryst/2021.1.2-intel-2020a": {"clusters": ["skitty"]}}, "description": "ObjCryst++ is Object-Oriented Crystallographic Library for C++", "homepage": "https://github.com/diffpy/libobjcryst"}, "libogg": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libogg/1.3.4-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libogg/1.3.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libogg/1.3.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libogg/1.3.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libogg/1.3.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libogg/1.3.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Ogg is a multimedia container format, and the native file and stream format for the Xiph.orgmultimedia codecs.", "homepage": "https://xiph.org/ogg/"}, "libopus": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libopus/1.3.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libopus/1.3.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libopus/1.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype\u2019s SILK codec and Xiph.Org\u2019s CELT codec.", "homepage": "https://www.opus-codec.org/"}, "libpciaccess": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libpciaccess/0.14-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpciaccess/0.16-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpciaccess/0.16-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpciaccess/0.16-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpciaccess/0.16-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpciaccess/0.16-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpciaccess/0.17-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpciaccess/0.17-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpciaccess/0.17-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Generic PCI access library.", "homepage": "https://cgit.freedesktop.org/xorg/lib/libpciaccess/"}, "libpng": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libpng/1.6.37-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libpng/1.6.37-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpng/1.6.37-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpng/1.6.37-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpng/1.6.37-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpng/1.6.37-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpng/1.6.38-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpng/1.6.39-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpng/1.6.40-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpng/1.2.58": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "libpng/1.6.36-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "libpng is the official PNG reference library", "homepage": "http://www.libpng.org/pub/png/libpng.html"}, "libpsl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libpsl/0.21.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libpsl/0.21.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "C library for the Public Suffix List", "homepage": "https://rockdaboot.github.io/libpsl"}, "libreadline": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libreadline/8.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libreadline/8.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libreadline/8.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libreadline/8.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libreadline/8.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libreadline/8.1.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libreadline/8.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libreadline/8.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libreadline/8.2-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libreadline/8.0-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.", "homepage": "http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html"}, "librttopo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"librttopo/1.1.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The RT Topology Library exposes an API to create andmanage standard (ISO 13249 aka SQL/MM) topologies using user-provideddata stores.", "homepage": "https://git.osgeo.org/gitea/rttopo/librttopo"}, "libsndfile": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libsndfile/1.0.28-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsndfile/1.0.31-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsndfile/1.0.31-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsndfile/1.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsndfile/1.2.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsndfile/1.2.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsndfile/1.0.28-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libsndfile/1.0.28-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.", "homepage": "http://www.mega-nerd.com/libsndfile"}, "libsodium": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libsodium/1.0.18-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsodium/1.0.18-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsodium/1.0.18-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsodium/1.0.18-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsodium/1.0.18-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsodium/1.0.18-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsodium/1.0.18-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libsodium/1.0.18-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.", "homepage": "https://doc.libsodium.org/"}, "LibSoup": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LibSoup/2.74.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "LibSoup/3.0.7-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "libsoup is an HTTP client/server library for GNOME. Ituses GObjects and the glib main loop, to integrate well with GNOMEapplications, and also has a synchronous API, for use in threadedapplications.", "homepage": "https://wiki.gnome.org/Projects/libsoup"}, "libspatialindex": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libspatialindex/1.9.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API", "homepage": "https://libspatialindex.org"}, "libspatialite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libspatialite/5.0.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SpatiaLite is an open source library intended to extend the SQLite core to support fully fledged Spatial SQL capabilities.", "homepage": "https://www.gaia-gis.it/fossil/libspatialite/home"}, "LIBSVM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LIBSVM/3.25-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LIBSVM/3.30-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification.", "homepage": "https://www.csie.ntu.edu.tw/~cjlin/libsvm/"}, "libtasn1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libtasn1/4.17.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libtasn1/4.18.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package.", "homepage": "https://www.gnu.org/software/libtasn1/"}, "LibTIFF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LibTIFF/4.1.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LibTIFF/4.2.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LibTIFF/4.3.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LibTIFF/4.3.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LibTIFF/4.4.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LibTIFF/4.5.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LibTIFF/4.6.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LibTIFF/4.0.10-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LibTIFF/4.1.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "tiff: Library and tools for reading and writing TIFF data files", "homepage": "https://libtiff.maptools.org/"}, "libtirpc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libtirpc/1.3.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtirpc/1.3.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtirpc/1.3.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtirpc/1.3.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtirpc/1.3.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtirpc/1.2.6-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libtirpc/1.3.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtirpc/1.2.6-GCCcore-9.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "Libtirpc is a port of Suns Transport-Independent RPC library to Linux.", "homepage": "https://sourceforge.net/projects/libtirpc/"}, "libtool": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libtool/2.4.6-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtool/2.4.6-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtool/2.4.6-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtool/2.4.6-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtool/2.4.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtool/2.4.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtool/2.4.7-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtool/2.4.7-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtool/2.4.7-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtool/2.4.7": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libtool/2.4.6-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.", "homepage": "http://www.gnu.org/software/libtool"}, "libunistring": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libunistring/0.9.10-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libunistring/1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libunistring/0.9.10-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libunistring/0.9.10-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.", "homepage": "https://www.gnu.org/software/libunistring/"}, "libunwind": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libunwind/1.3.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libunwind/1.4.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libunwind/1.4.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libunwind/1.5.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libunwind/1.6.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libunwind/1.6.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libunwind/1.6.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libunwind/1.3.1-GCCcore-8.2.0": {"clusters": ["doduo"]}, "libunwind/1.3.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications", "homepage": "https://www.nongnu.org/libunwind/"}, "libvdwxc": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"libvdwxc/0.4.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libvdwxc/0.4.0-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "libvdwxc is a general library for evaluating energy and potential forexchange-correlation (XC) functionals from the vdW-DF family that can be used with variousof density functional theory (DFT) codes.", "homepage": "https://libvdwxc.org"}, "libvorbis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libvorbis/1.3.7-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libvorbis/1.3.7-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libvorbis/1.3.7-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libvorbis/1.3.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libvorbis/1.3.7-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libvorbis/1.3.7-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressedaudio format", "homepage": "https://xiph.org/vorbis/"}, "libvori": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libvori/220621-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libvori/220621-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "C++ library implementing the Voronoi integration as well as the compressed bqbfile format. The present version of libvori is a very early developmentversion, which is hard-coded to work with the CP2k program package.", "homepage": "https://brehm-research.de/libvori.php"}, "libwebp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libwebp/1.1.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libwebp/1.2.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libwebp/1.2.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libwebp/1.2.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libwebp/1.3.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libwebp/1.3.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "WebP is a modern image format that provides superiorlossless and lossy compression for images on the web. Using WebP,webmasters and web developers can create smaller, richer images thatmake the web faster.", "homepage": "https://developers.google.com/speed/webp/"}, "libwpe": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libwpe/1.13.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "WPE is the reference WebKit port for embedded andlow-consumption computer devices. It has been designed from theground-up with performance, small footprint, accelerated contentrendering, and simplicity of deployment in mind, bringing theexcellence of the WebKit engine to countless platforms and target devices.", "homepage": "https://webkit.org/wpe"}, "libxc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libxc/5.1.5-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxc/5.1.6-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "libxc/5.1.6-intel-compilers-2021.4.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxc/5.2.3-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxc/5.2.3-intel-compilers-2022.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxc/6.1.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxc/6.2.2-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxc/3.0.1-foss-2020a": {"clusters": ["doduo"]}, "libxc/3.0.1-intel-2019b": {"clusters": ["doduo"]}, "libxc/3.0.1-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libxc/3.0.1-iomkl-2020a": {"clusters": ["doduo"]}, "libxc/4.3.4-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libxc/4.3.4-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libxc/4.3.4-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxc/4.3.4-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libxc/4.3.4-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libxc/4.3.4-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxc/5.1.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxc/5.1.5-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.", "homepage": "https://www.tddft.org/programs/libxc"}, "libxml2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libxml2/2.9.9-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxml2/2.9.10-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxml2/2.9.10-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxml2/2.9.10-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxml2/2.9.10-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxml2/2.9.13-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxml2/2.10.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxml2/2.11.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxml2/2.11.5-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxml2/2.9.8-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).", "homepage": "http://xmlsoft.org/"}, "libxslt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libxslt/1.1.34-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxslt/1.1.34-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxslt/1.1.34-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxslt/1.1.34-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxslt/1.1.37-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxslt/1.1.38-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxslt/1.1.38-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxslt/1.1.34-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libxslt/1.1.34-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).", "homepage": "http://xmlsoft.org/"}, "libxsmm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libxsmm/1.17-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxsmm/1.17-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxsmm/1.17-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxsmm/1.16.1-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libxsmm/1.16.1-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "libxsmm/1.16.1-iccifort-2019.5.281": {"clusters": ["doduo"]}, "libxsmm/1.16.1-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libxsmm/1.16.1-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "joltik"]}, "libxsmm/1.16.2-GCC-10.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "LIBXSMM is a library for small dense and small sparse matrix-matrix multiplicationstargeting Intel Architecture (x86).", "homepage": "https://github.com/hfp/libxsmm"}, "libyaml": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libyaml/0.2.2-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libyaml/0.2.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libyaml/0.2.5-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libyaml/0.2.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libyaml/0.2.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libyaml/0.2.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libyaml/0.2.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "libyaml/0.2.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "LibYAML is a YAML parser and emitter written in C.", "homepage": "https://pyyaml.org/wiki/LibYAML"}, "libzip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"libzip/1.7.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "libzip is a C library for reading, creating, and modifying zip archives.", "homepage": "https://libzip.org/"}, "lifelines": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"lifelines/0.27.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "astor-0.8.1, autograd-1.5, autograd-gamma-0.5.0, formulaic-0.4.0, interface_meta-1.3.0, lifelines-0.27.4, wrapt-1.14.1"}}, "description": "lifelines is a complete survival analysis library, written in pure Python.", "homepage": "https://lifelines.readthedocs.io/en/latest/"}, "Lighter": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Lighter/1.1.2-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Fast and memory-efficient sequencing error corrector", "homepage": "https://github.com/mourisl/Lighter"}, "LittleCMS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LittleCMS/2.11-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LittleCMS/2.12-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LittleCMS/2.12-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LittleCMS/2.13.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LittleCMS/2.14-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LittleCMS/2.15-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LittleCMS/2.9-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LittleCMS/2.9-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.", "homepage": "http://www.littlecms.com/"}, "LLVM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LLVM/8.0.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "LLVM/9.0.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "LLVM/11.0.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LLVM/11.1.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LLVM/12.0.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LLVM/14.0.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LLVM/14.0.6-GCCcore-12.2.0-llvmlite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LLVM/14.0.6-GCCcore-12.3.0-llvmlite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LLVM/15.0.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LLVM/16.0.6-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LLVM/7.0.1-GCCcore-8.2.0": {"clusters": ["doduo"]}, "LLVM/9.0.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LLVM/10.0.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation (\"LLVM IR\"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.", "homepage": "https://llvm.org/"}, "LMDB": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LMDB/0.9.24-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LMDB/0.9.28-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LMDB/0.9.29-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LMDB/0.9.29-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LMDB/0.9.29-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LMDB/0.9.31-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LMDB/0.9.24-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LMDB/0.9.24-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.", "homepage": "https://symas.com/lmdb"}, "lmoments3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"lmoments3/1.0.6-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "lmoments3-1.0.6, versioneer-0.29"}}, "description": "Estimate linear moments for statistical distribution functions.", "homepage": "https://github.com/OpenHydrology/lmoments3"}, "Longshot": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Longshot/0.4.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Longshot/0.4.1-GCCcore-8.3.0": {"clusters": ["doduo"]}, "Longshot/0.4.3-GCCcore-10.2.0": {"clusters": ["donphan", "joltik"]}}, "description": "Longshot is a variant calling tool for diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). It takes as input an aligned BAM file and outputs a phased VCF file with variants and haplotype information. It can also output haplotype-separated BAM files that can be used for downstream analysis. Currently, it only calls single nucleotide variants (SNVs).", "homepage": "https://github.com/pjedge/longshot"}, "loompy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"loompy/3.0.7-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "loompy-3.0.7, numpy_groupies-0.9.14"}, "loompy/3.0.7-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "loompy-3.0.7, numpy_groupies-0.9.14"}, "loompy/3.0.7-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "loompy-3.0.7, numpy-groupies-0.9.20"}, "loompy/3.0.7-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "loompy-3.0.7, numpy_groupies-0.9.14"}, "loompy/3.0.6-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "loompy-3.0.6, numpy_groupies-0.9.13"}}, "description": "Python implementation of the Loom file format, an efficient file format for large omics datasets", "homepage": "https://loompy.org/"}, "loomR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"loomR/0.2.0-20180425-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "loomR/0.2.0-20180425-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "loomR/0.2.0-20180425-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "An R interface for loom files", "homepage": "https://github.com/mojaveazure/loomR"}, "LoRDEC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LoRDEC/0.9-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Program for correcting sequencing errors in long reads (e.g., PacBio, Oxford Nanopore) using highlyaccurate short reads (e.g., Illumina).", "homepage": "https://www.lirmm.fr/~rivals/lordec"}, "louvain": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"louvain/0.8.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "igraph-0.10.2, louvain-0.8.0, texttable-1.6.7"}}, "description": "louvain is a general algorithm for methods of community detection in large networks", "homepage": "https://pypi.org/project/louvain"}, "lpsolve": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"lpsolve/5.5.2.11-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lpsolve/5.5.2.11-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lpsolve/5.5.2.5-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "lpsolve/5.5.2.5-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Mixed Integer Linear Programming (MILP) solver", "homepage": "https://sourceforge.net/projects/lpsolve/"}, "LSD2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LSD2/2.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "LSD2/2.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LSD2/2.4.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Least-squares methods to estimate rates and dates from phylogenies", "homepage": "https://github.com/tothuhien/lsd2"}, "Lua": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Lua/5.1.5-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Lua/5.3.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Lua/5.4.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Lua/5.4.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Lua/5.4.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Lua/5.4.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Lua/5.4.6-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Lua/5.3.5-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.", "homepage": "https://www.lua.org/"}, "lxml": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"lxml/4.6.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lxml/4.6.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lxml/4.6.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lxml/4.9.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lxml/4.9.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lxml/4.9.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lxml/4.9.3-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lxml/4.4.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "lxml/4.5.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.", "homepage": "https://lxml.de/"}, "lz4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"lz4/1.9.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "lz4/1.9.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lz4/1.9.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lz4/1.9.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lz4/1.9.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lz4/1.9.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lz4/1.9.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lz4/1.9.4-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "lz4/1.9.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.", "homepage": "https://lz4.github.io/lz4/"}, "LZO": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LZO/2.10-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LZO/2.10-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LZO/2.10-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LZO/2.10-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LZO/2.10-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "LZO/2.10-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LZO/2.10-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Portable lossless data compression library", "homepage": "https://www.oberhumer.com/opensource/lzo/"}, "M4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"M4/1.4.17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.18-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.18-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.18-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.18-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.19-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.19-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.19-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.19-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.19-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.19": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "M4/1.4.18-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.", "homepage": "http://www.gnu.org/software/m4/m4.html"}, "MACS2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MACS2/2.2.7.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Model Based Analysis for ChIP-Seq data", "homepage": "https://github.com/taoliu/MACS"}, "MACS3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MACS3/3.0.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cykhash-2.0.1, MACS3-3.0.0"}, "MACS3/3.0.1-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cykhash-2.0.1, MACS3-3.0.1"}}, "description": "Model Based Analysis for ChIP-Seq data", "homepage": "https://macs3-project.github.io/MACS/"}, "maeparser": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"maeparser/1.3.0-iimpi-2020a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "maeparser is a parser for Schrodinger Maestro files.", "homepage": "https://github.com/schrodinger/maeparser"}, "MAFFT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MAFFT/7.490-gompi-2021b-with-extensions": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MAFFT/7.505-GCC-11.3.0-with-extensions": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MAFFT/7.505-GCC-12.2.0-with-extensions": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MAFFT/7.520-GCC-12.3.0-with-extensions": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MAFFT/7.453-GCC-8.3.0-with-extensions": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MAFFT/7.453-GCC-9.3.0-with-extensions": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MAFFT/7.453-iccifort-2019.5.281-with-extensions": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MAFFT/7.453-iimpi-2020a-with-extensions": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MAFFT/7.475-GCC-10.2.0-with-extensions": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "MAFFT/7.475-gompi-2020b-with-extensions": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MAFFT is a multiple sequence alignment program for unix-like operating systems.It offers a range of multiple alignment methods, L-INS-i (accurate; for alignmentof <\u223c200 sequences), FFT-NS-2 (fast; for alignment of <\u223c30,000 sequences), etc.", "homepage": "https://mafft.cbrc.jp/alignment/software/source.html"}, "MAGeCK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MAGeCK/0.5.9.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MAGeCK/0.5.9.5-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens (or GeCKO) technology. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute, and is being actively updated by Wei Li lab from Children's National Medical Center.", "homepage": "https://sourceforge.net/p/mageck/wiki/Home/"}, "magma": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"magma/2.5.4-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "magma/2.6.1-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}, "magma/2.6.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "magma/2.7.2-foss-2023a-CUDA-12.1.1": {"clusters": ["accelgor", "donphan", "joltik"]}}, "description": "The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems.", "homepage": "https://icl.cs.utk.edu/magma/"}, "mahotas": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mahotas/1.4.13-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Mahotas is a computer vision and image processing library for Python", "homepage": "https://mahotas.readthedocs.io/"}, "make": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"make/4.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo"]}, "make/4.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "make/4.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "gallade"]}, "make/4.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik"]}, "make/4.4.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "make/4.4.1-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "make/4.2.1-GCCcore-8.3.0": {"clusters": ["doduo", "skitty"]}, "make/4.3-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "make/4.3-GCCcore-12.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "GNU version of make utility", "homepage": "https://www.gnu.org/software/make/make.html"}, "makeinfo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"makeinfo/6.7-GCCcore-8.3.0-minimal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "makeinfo/6.7-GCCcore-9.3.0-minimal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "makeinfo/6.7-GCCcore-10.2.0-minimal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "makeinfo/6.7-GCCcore-10.3.0-minimal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "makeinfo/7.0.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "makeinfo/6.7-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "makeinfo/6.7-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "makeinfo/6.7-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "makeinfo/6.7-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "makeinfo is part of the Texinfo project, the official documentation format of the GNU project.", "homepage": "https://www.gnu.org/software/texinfo/"}, "Mako": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Mako/1.1.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Mako/1.1.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mako/1.1.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mako/1.1.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mako/1.2.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mako/1.2.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mako/1.2.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Mako-1.2.4, MarkupSafe-2.1.3"}, "Mako/1.0.8-GCCcore-8.2.0": {"clusters": ["doduo"]}, "Mako/1.1.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A super-fast templating language that borrows the best ideas from the existing templating languages", "homepage": "https://www.makotemplates.org"}, "mapDamage": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mapDamage/2.2.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "mapDamage2 is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.", "homepage": "https://ginolhac.github.io/mapDamage/"}, "MariaDB": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MariaDB/10.6.4-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MariaDB/10.6.4-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MariaDB/10.9.3-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MariaDB/10.4.13-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MariaDB/10.5.8-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MariaDB is an enhanced, drop-in replacement for MySQL.Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga.", "homepage": "https://mariadb.org/"}, "Mash": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Mash/2.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Mash/2.3-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mash/2.3-intel-compilers-2021.4.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Mash/2.2-GCC-9.3.0": {"clusters": ["doduo", "donphan", "gallade", "skitty"]}}, "description": "Fast genome and metagenome distance estimation using MinHash", "homepage": "http://mash.readthedocs.org"}, "MaSuRCA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MaSuRCA/4.1.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454, Pacbio and Nanopore).", "homepage": "https://www.genome.umd.edu/masurca.html"}, "MATLAB": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MATLAB/2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MATLAB/2022b-r5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MATLAB/2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.", "homepage": "http://www.mathworks.com/products/matlab"}, "matplotlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"matplotlib/3.2.1-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.2.1"}, "matplotlib/3.3.3-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cycler-0.10.0, kiwisolver-1.3.0, matplotlib-3.3.3"}, "matplotlib/3.3.3-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "Cycler-0.10.0, kiwisolver-1.3.0, matplotlib-3.3.3"}, "matplotlib/3.4.2-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cycler-0.10.0, kiwisolver-1.3.1, matplotlib-3.4.2"}, "matplotlib/3.4.2-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cycler-0.10.0, kiwisolver-1.3.1, matplotlib-3.4.2"}, "matplotlib/3.4.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cycler-0.11.0, kiwisolver-1.3.2, matplotlib-3.4.3"}, "matplotlib/3.4.3-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "Cycler-0.11.0, kiwisolver-1.3.2, matplotlib-3.4.3"}, "matplotlib/3.5.2-foss-2021b": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "cppy-1.2.1, Cycler-0.11.0, fonttools-4.34.0, kiwisolver-1.4.3, matplotlib-3.5.2, Pillow-9.1.1, setuptools-62.1.0"}, "matplotlib/3.5.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cycler-0.11.0, fonttools-4.34.0, kiwisolver-1.4.3, matplotlib-3.5.2"}, "matplotlib/3.5.2-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Cycler-0.11.0, fonttools-4.34.0, kiwisolver-1.4.3, matplotlib-3.5.2"}, "matplotlib/3.7.0-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "contourpy-1.0.7, Cycler-0.11.0, fonttools-4.38.0, kiwisolver-1.4.4, matplotlib-3.7.0"}, "matplotlib/3.7.2-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "contourpy-1.1.0, Cycler-0.11.0, fonttools-4.42.0, kiwisolver-1.4.4, matplotlib-3.7.2"}, "matplotlib/2.2.4-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.4, subprocess32-3.5.4"}, "matplotlib/2.2.4-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.4, subprocess32-3.5.4"}, "matplotlib/2.2.5-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.5, subprocess32-3.5.4"}, "matplotlib/2.2.5-intel-2020a-Python-2.7.18": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.5, subprocess32-3.5.4"}, "matplotlib/3.1.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.1.1"}, "matplotlib/3.1.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.1.1"}, "matplotlib/3.2.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.2.1"}, "matplotlib/3.3.3-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Cycler-0.10.0, kiwisolver-1.3.0, matplotlib-3.3.3"}}, "description": "matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.", "homepage": "https://matplotlib.org"}, "maturin": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"maturin/1.1.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "maturin/1.1.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "maturin/1.4.0-GCCcore-12.2.0-Rust-1.75.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "maturin/1.4.0-GCCcore-12.3.0-Rust-1.75.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "This project is meant as a zero configurationreplacement for setuptools-rust and milksnake. It supports buildingwheels for python 3.5+ on windows, linux, mac and freebsd, can uploadthem to pypi and has basic pypy and graalpy support.", "homepage": "https://github.com/pyo3/maturin"}, "Maven": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Maven/3.6.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Maven/3.6.0": {"clusters": ["donphan", "joltik"]}}, "description": "Binary maven install, Apache Maven is a software project management and comprehension tool. Based onthe concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from acentral piece of information.", "homepage": "https://maven.apache.org/index.html"}, "MaxBin": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MaxBin/2.2.7-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MaxBin/2.2.7-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MaxBin is software for binning assembled metagenomic sequencesbased on an Expectation-Maximization algorithm.", "homepage": "https://sourceforge.net/projects/maxbin/"}, "MCL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MCL/22.282-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MCL/14.137-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MCL/14.137-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MCL/14.137-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The MCL algorithm is short for the Markov Cluster Algorithm, a fastand scalable unsupervised cluster algorithm for graphs (also known as networks) basedon simulation of (stochastic) flow in graphs.", "homepage": "https://micans.org/mcl/"}, "mcu": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mcu/2021-04-06-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "A package for periodic wavefunction and crystallography analysis. mcu is designed to support large scale analysis and topological descriptions for periodic wavefunction.", "homepage": "https://hungqpham.com/mcu/"}, "MDAnalysis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MDAnalysis/2.4.2-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "biopython-1.81, fasteners-0.18, GridDataFormats-1.0.1, gsd-2.8.0, MDAnalysis-2.4.2, mmtf-python-1.1.3, mrcfile-1.4.3, msgpack-1.0.5"}, "MDAnalysis/2.4.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "fasteners-0.18, funcsigs-1.0.2, GridDataFormats-1.0.1, gsd-2.8.0, MDAnalysis-2.4.2, mmtf-python-1.1.3, mrcfile-1.4.3, msgpack-1.0.5"}}, "description": "MDAnalysis is an object-oriented Python library to analyze trajectories from molecular dynamics (MD)simulations in many popular formats.", "homepage": "https://www.mdanalysis.org/"}, "MDTraj": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MDTraj/1.9.5-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "astor-0.8.1, astunparse-1.6.2, mdtraj-1.9.5, pymbar-3.0.5"}, "MDTraj/1.9.7-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.1"}, "MDTraj/1.9.7-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.1"}, "MDTraj/1.9.7-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.0.5"}, "MDTraj/1.9.7-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.1"}, "MDTraj/1.9.3-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MDTraj/1.9.3-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MDTraj/1.9.4-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "astor-0.8.1, mdtraj-1.9.4, pymbar-3.0.5"}, "MDTraj/1.9.5-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "astor-0.8.1, astunparse-1.6.2, mdtraj-1.9.5, pymbar-3.0.5"}, "MDTraj/1.9.5-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "astor-0.8.1, astunparse-1.6.2, mdtraj-1.9.5, pymbar-3.0.5"}}, "description": "Read, write and analyze MD trajectories with only a few lines of Python code.", "homepage": "https://mdtraj.org"}, "medaka": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"medaka/1.6.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "mappy-2.22, medaka-1.6.0"}, "medaka/1.8.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mappy-2.24, medaka-1.8.1"}, "medaka/1.9.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mappy-2.24, medaka-1.9.1"}, "medaka/1.11.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mappy-2.24, medaka-1.11.3, pyspoa-0.2.1, wurlitzer-3.0.3"}, "medaka/1.1.3-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "mappy-2.17, medaka-1.1.3, ont-fast5-api-3.1.6, parasail-1.2, progressbar33-2.4, pyfaidx-0.5.9.1, whatshap-1.0, xopen-0.9.0"}, "medaka/1.2.6-foss-2019b-Python-3.7.4": {"clusters": ["doduo"], "extensions": "intervaltree-3.1.0, isal-0.9.0, mappy-2.17, medaka-1.2.6, ont-fast5-api-3.3.0, parasail-1.2.4, progressbar33-2.4, pyfaidx-0.5.9.5, sortedcontainers-2.3.0, whatshap-1.0, xopen-1.1.0"}, "medaka/1.4.3-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "intervaltree-3.1.0, isal-0.10.0, mappy-2.20, medaka-1.4.3, parasail-1.2.4, sortedcontainers-2.4.0, whatshap-1.1, xopen-1.1.0"}, "medaka/1.4.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "intervaltree-3.1.0, mappy-2.22, medaka-1.4.3, ont-fast5-api-3.3.0, parasail-1.2.4, progressbar33-2.4, sortedcontainers-2.4.0, whatshap-1.1, xopen-1.1.0"}, "medaka/1.1.1-foss-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "mappy-2.17, medaka-1.1.1, ont-fast5-api-3.1.6, parasail-1.2, progressbar33-2.4, pyfaidx-0.5.9.1, whatshap-1.0, xopen-0.9.0"}}, "description": "medaka is a tool to create a consensus sequence from nanopore sequencing data.", "homepage": "https://github.com/nanoporetech/medaka"}, "MedPy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MedPy/0.4.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "MedPy/0.4.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MedPy/0.4.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MedPy is a library and script collection for medical image processing in Python, providing basic functionalities for reading, writing and manipulating large images of arbitrary dimensionality. Its main contributions are n-dimensional versions of popular image filters, a collection of image feature extractors, ready to be used with scikit-learn, and an exhaustive n-dimensional graph-cut package.", "homepage": "https://pypi.org/project/MedPy/"}, "MEGAHIT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MEGAHIT/1.2.9-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MEGAHIT/1.2.9-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MEGAHIT/1.2.9-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MEGAHIT/1.2.9-GCCcore-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "An ultra-fast single-node solution for large and complexmetagenomics assembly via succinct de Bruijn graph", "homepage": "https://github.com/voutcn/megahit"}, "Megalodon": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Megalodon/2.3.5-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "mappy-2.22, megalodon-2.3.5, ont-fast5-api-4.0.0, ont_pyguppy_client_lib-5.0.16, progressbar33-2.4"}, "Megalodon/2.3.5-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mappy-2.22, megalodon-2.3.5, ont-fast5-api-4.0.0, ont_pyguppy_client_lib-5.0.16, progressbar33-2.4"}}, "description": "Megalodon is a research command line tool to extract high accuracy modified base and sequence variantcalls from raw nanopore reads by anchoring the information rich basecalling neural network output to a referencegenome/transriptome.", "homepage": "https://github.com/nanoporetech/megalodon"}, "MEGAN": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MEGAN/6.25.3-Java-17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MEGAN is a comprehensive toolbox for interactively analyzing microbiome data", "homepage": "http://megan.informatik.uni-tuebingen.de/"}, "MEME": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MEME/5.4.1-gompi-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MEME/5.5.4-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The MEME Suite allows you to: * discover motifs using MEME, DREME (DNA only) or GLAM2 on groups of related DNA or protein sequences, * search sequence databases with motifs using MAST, FIMO, MCAST or GLAM2SCAN, * compare a motif to all motifs in a database of motifs, * associate motifs with Gene Ontology terms via their putative target genes, and * analyse motif enrichment using SpaMo or CentriMo.", "homepage": "https://meme-suite.org/meme/index.html"}, "Mercurial": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Mercurial/6.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Mercurial is a free, distributed source control management tool. It efficiently handles projectsof any size and offers an easy and intuitive interface.", "homepage": "https://www.mercurial-scm.org"}, "Mesa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Mesa/19.1.7-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Mesa/20.2.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/21.1.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/21.1.7-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/22.0.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/22.2.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/23.1.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Mesa/19.0.1-GCCcore-8.2.0": {"clusters": ["doduo"]}, "Mesa/19.2.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Mesa/20.0.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.", "homepage": "https://www.mesa3d.org/"}, "meson-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"meson-python/0.13.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "meson-python-0.13.2, pyproject-metadata-0.7.1"}, "meson-python/0.15.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "meson-python-0.15.0, pyproject-metadata-0.7.1"}}, "description": "Python build backend (PEP 517) for Meson projects", "homepage": "https://github.com/mesonbuild/meson-python"}, "Meson": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Meson/0.55.1-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.55.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.58.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.58.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.59.1-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["accelgor", "donphan", "joltik", "skitty"]}, "Meson/0.62.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.64.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/1.1.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/1.2.3-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Meson/0.50.0-GCCcore-8.2.0-Python-3.7.2": {"clusters": ["doduo"]}, "Meson/0.51.2-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Meson/0.53.2-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.", "homepage": "https://mesonbuild.com"}, "MetaBAT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MetaBAT/2.15-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MetaBAT/2.15-gompi-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "An efficient tool for accurately reconstructing single genomes from complex microbial communities", "homepage": "https://bitbucket.org/berkeleylab/metabat"}, "MetaEuk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MetaEuk/6-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MetaEuk/4-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs.", "homepage": "https://metaeuk.soedinglab.org"}, "MetaPhlAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MetaPhlAn/4.0.6-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "hclust2-1.0.0, MetaPhlAn-4.0.6"}}, "description": "MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data", "homepage": "https://github.com/biobakery/MetaPhlAn"}, "methylpy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"methylpy/1.2.9-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Bisulfite sequencing data processing and differential methylation analysis.", "homepage": "https://pypi.python.org/pypi/methylpy"}, "METIS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"METIS/5.1.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "METIS/5.1.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.", "homepage": "http://glaros.dtc.umn.edu/gkhome/metis/metis/overview"}, "mgen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mgen/1.2.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Convenient matrix generation functions", "homepage": "https://github.com/NOhs/mgen/tree/master"}, "mgltools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mgltools/1.5.7": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "The MGLTools software suite can be used for visualization and analysis of molecular structures and comprises the Python Molecular Viewer (PMV, a general purpose molecular viewer), AutoDockTools (ADT, a set of PMV commands specifically developed to support AutoDock users) and Vision (a visual programming environment).", "homepage": "https://ccsb.scripps.edu/mgltools/"}, "MIGRATE-N": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MIGRATE-N/5.0.4-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Migrate estimates population parameters, effective population sizesand migration rates of n populations, using genetic data. It uses a coalescent theory approach taking into account history of mutations and uncertainty of the genealogy.", "homepage": "https://peterbeerli.com/migrate-html5/index.html"}, "Mikado": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Mikado/2.3.4-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "marshmallow-3.14.1, marshmallow_dataclass-8.5.3, Mikado-2.3.4, mypy_extensions-1.0.0, python-rapidjson-1.10, SQLAlchemy-2.0.20, SQLAlchemy-Utils-0.41.1, typeguard-4.1.2, typing_extensions-4.7.1, typing_inspect-0.9.0"}}, "description": "Mikado is a lightweight Python3 pipeline to identify the most useful or \u201cbest\u201d set of transcripts from multiple transcript assemblies. Our approach leverages transcript assemblies generated by multiple methods to define expressed loci, assign a representative transcript and return a set of gene models that selects against transcripts that are chimeric, fragmented or with short or disrupted CDS.", "homepage": "https://github.com/EI-CoreBioinformatics/mikado"}, "Miniconda3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Miniconda3/22.11.1-1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Miniconda3/23.5.2-0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Miniconda3/4.8.3": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Miniconda3/4.9.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Miniconda3/4.7.10": {"clusters": ["skitty"]}}, "description": "Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.", "homepage": "https://docs.conda.io/en/latest/miniconda.html"}, "minimap2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"minimap2/2.20-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "minimap2/2.22-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "minimap2/2.24-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "minimap2/2.24-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "minimap2/2.26-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "minimap2/2.26-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "minimap2/2.17-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "minimap2/2.17-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "minimap2/2.18-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "minimap2/2.20-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Minimap2 is a fast sequence mapping and alignmentprogram that can find overlaps between long noisy reads, or map longreads or their assemblies to a reference genome optionally with detailedalignment (i.e. CIGAR). At present, it works efficiently with querysequences from a few kilobases to ~100 megabases in length at an errorrate ~15%. Minimap2 outputs in the PAF or the SAM format. On limitedtest data sets, minimap2 is over 20 times faster than most otherlong-read aligners. It will replace BWA-MEM for long reads and contigalignment.", "homepage": "https://github.com/lh3/minimap2"}, "Minipolish": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Minipolish/0.1.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "A tool for Racon polishing of miniasm assemblies", "homepage": "https://github.com/rrwick/Minipolish"}, "minizip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"minizip/1.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Mini zip and unzip based on zlib", "homepage": "https://www.winimage.com/zLibDll/minizip.html"}, "MinPath": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MinPath/1.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MinPath/1.4-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.", "homepage": "https://omics.informatics.indiana.edu/MinPath"}, "MitoHiFi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MitoHiFi/3.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "dna-features-viewer-3.1.2, MitoHiFi-3.2, mitos-2.1.3"}}, "description": "MitoHiFi is a Python workflow that assembles mitogenomes from Pacbio HiFi reads", "homepage": "https://github.com/marcelauliano/MitoHiFi"}, "MiXCR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MiXCR/4.6.0-Java-17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MiXCR/3.0.13-Java-11": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoiresfrom any type of sequencing data.", "homepage": "https://milaboratory.com/software/mixcr"}, "mkl-service": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mkl-service/2.3.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "mkl-service/2.3.0-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"]}, "mkl-service/2.3.0-intel-2020b": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "Python hooks for Intel(R) Math Kernel Library runtime control settings.", "homepage": "https://github.com/IntelPython/mkl-service"}, "MMseqs2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MMseqs2/13-45111-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MMseqs2/13-45111-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MMseqs2/13-45111-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MMseqs2/14-7e284-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MMseqs2/14-7e284-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MMseqs2/10-6d92c-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MMseqs2/10-6d92c-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MMseqs2/11-e1a1c-iimpi-2019b": {"clusters": ["doduo", "skitty"]}, "MMseqs2/12-113e3-gompi-2020b": {"clusters": ["doduo"]}, "MMseqs2/13-45111-20211006-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik"]}, "MMseqs2/13-45111-20211019-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MMseqs2: ultra fast and sensitive search and clustering suite", "homepage": "https://mmseqs.com"}, "ModelTest-NG": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"ModelTest-NG/0.1.7-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments.ModelTest-NG supersedes jModelTest and ProtTest in one single tool, with graphical and command console interfaces.", "homepage": "https://github.com/ddarriba/modeltest"}, "Molekel": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Molekel/5.4.0-Linux_x86_64": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Molekel is an open-source multi-platform molecular visualization program.", "homepage": "http://ugovaretto.github.io/molekel/wiki/pmwiki.php/Main/HomePage.html"}, "molmod": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"molmod/1.4.5-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "molmod/1.4.5-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "molmod/1.4.5-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MolMod is a Python library with many compoments that are useful to write molecular modeling programs.", "homepage": "https://molmod.github.io/molmod/"}, "MONAI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MONAI/1.0.1-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "fire-0.5.0, gdown-4.7.1, lmdb-1.4.1, MONAI-1.0.1, termcolor-2.3.0"}, "MONAI/1.0.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "MONAI-1.0.1"}}, "description": "MONAI is a PyTorch-based, open-source framework for deep learning in healthcareimaging, part of PyTorch Ecosystem.", "homepage": "https://monai.io/"}, "Monocle3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Monocle3/1.3.1-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "biglm-0.9-2.1, furrr-0.3.1, ggrastr-1.0.1, grr-0.9.5, leidenbase-0.1.9, Matrix.utils-0.9.8, Monocle3-1.3.1, pbmcapply-1.5.1, ragg-1.2.5, RhpcBLASctl-0.21-247.1, rlang-1.0.6, rsample-1.1.1, sf-1.0-9, slider-0.3.0, spdep-1.2-7, speedglm-0.3-5, systemfonts-1.0.4, textshaping-0.3.6, uwot-0.1.14, vctrs-0.5.2, warp-0.2.0"}, "Monocle3/0.2.3-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "furrr-0.2.2, grr-0.9.5, leidenbase-0.1.2, Matrix.utils-0.9.8, Monocle3-0.2.3, pbmcapply-1.5.0, RhpcBLASctl-0.20-137, rlang-0.4.10, rsample-0.0.9, sf-0.9-7, slider-0.1.5, spdep-1.1-5, speedglm-0.3-3, uwot-0.1.10, warp-0.2.0"}}, "description": "An analysis toolkit for single-cell RNA-seq.", "homepage": "https://cole-trapnell-lab.github.io/monocle3/"}, "MOOSE": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MOOSE/2022-06-10-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MOOSE/2021-05-18-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Multiphysics Object-Oriented Simulation Environment (MOOSE) is a finite-element, multiphysicsframework primarily developed by Idaho National Laboratory", "homepage": "https://mooseframework.inl.gov"}, "mosdepth": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mosdepth/0.3.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing", "homepage": "https://github.com/brentp/mosdepth"}, "mpath": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mpath/1.1.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mclass-1.3.4, mpath-1.1.3"}}, "description": "For now it's quit simple and get_path_info()method returns information about given path. It can be eithera directory or a file path.", "homepage": "https://pypi.org/project/mpath/"}, "MPC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MPC/1.2.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPC/1.2.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPC/1.3.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPC/1.3.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPC/1.1.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MPC/1.1.0-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MPC/1.2.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.", "homepage": "http://www.multiprecision.org/"}, "MPFR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MPFR/4.0.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MPFR/4.1.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.1.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.2.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.2.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MPFR/4.0.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.", "homepage": "https://www.mpfr.org"}, "mpi4py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mpi4py/3.1.4-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mpi4py-3.1.4"}, "mpi4py/3.1.4-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "mpi4py-3.1.4"}}, "description": "MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.", "homepage": "https://github.com/mpi4py/mpi4py"}, "mrcfile": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mrcfile/1.3.0-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "mrcfile/1.3.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}}, "description": "mrcfile is a Python implementation of the MRC2014 file format, which is used in structural biology to store image and volume data.It allows MRC files to be created and opened easily using a very simple API, which exposes the file\u2019s header and data as numpy arrays. The code runs in Python 2 and 3 and is fully unit-tested.This library aims to allow users and developers to read and write standard-compliant MRC files in Python as easily as possible, and with no dependencies onany compiled libraries except numpy. You can use it interactively to inspect files, correct headers and so on, or in scripts and larger software packages to provide basic MRC file I/O functions.", "homepage": "https://github.com/ccpem/mrcfile"}, "MRtrix": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MRtrix/3.0.4-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MRtrix/3.0-rc-20191217-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MRtrix/3.0-rc-20191217-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MRtrix/3.0.3-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines.", "homepage": "http://www.brain.org.au/software/index.html#mrtrix"}, "MSFragger": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MSFragger/4.0-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MSFragger is an ultrafast database search tool for peptide identification in mass spectrometry-based proteomics. It has demonstrated excellent performance across a wide range of datasets and applications. MSFragger is suitable for standard shotgun proteomics analyses as well as large datasets (including timsTOF PASEF data), enzyme unconstrained searches (e.g., peptidome), open database searches (e.g., precursor mass tolerance set to hundreds of Daltons) for identification of modified peptides, and glycopeptide identification (N-linked and O-linked).", "homepage": "https://msfragger.nesvilab.org/"}, "mujoco-py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mujoco-py/2.1.2.14-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "fasteners-0.17.2, glfw-2.5.0, mujoco-py-2.1.2.14"}, "mujoco-py/2.3.7-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-1.4.0, glfw-2.6.2, mujoco-2.3.7"}}, "description": "MuJoCo Python Bindings", "homepage": "https://github.com/deepmind/mujoco"}, "MuJoCo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MuJoCo/2.1.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MuJoCo/2.3.7-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MuJoCo stands for Multi-Joint dynamics with Contact. It is a general purposephysics engine that aims to facilitate research and development in robotics,biomechanics, graphics and animation, machine learning, and other areas whichdemand fast and accurate simulation of articulated structures interacting withtheir environment.", "homepage": "https://mujoco.org/"}, "multichoose": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"multichoose/1.0.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "multichoose/1.0.3-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "generate multiset combinations (n multichoose k).", "homepage": "https://github.com/ekg/multichoose"}, "MultilevelEstimators": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"MultilevelEstimators/0.1.0-GCC-11.2.0-Julia-1.7.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "ChainRulesCore-1.15.6, ChangesOfVariables-0.1.4, Compat-4.3.0, DocStringExtensions-0.9.2, FileIO-1.16.0, InverseFunctions-0.1.8, IrrationalConstants-0.1.1, JLD2-0.4.24, JLLWrappers-1.4.1, LogExpFunctions-0.3.18, MacroTools-0.5.10, MultilevelEstimators-0.1.0, OpenSpecFun_jll-0.5.5+0, OrderedCollections-1.4.1, Preferences-1.3.0, Reexport-1.2.2, Requires-1.3.0, SpecialFunctions-1.8.7, TranscodingStreams-0.9.9"}}, "description": "The Julia module for Multilevel Monte Carlo methods", "homepage": "https://github.com/PieterjanRobbe/MultilevelEstimators.jl"}, "MultiQC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MultiQC/1.14-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "coloredlogs-15.0.1, colormath-3.0.0, commonmark-0.9.1, humanfriendly-10.0, lzstring-1.0.4, Markdown-3.4.1, markdown-it-py-2.1.0, mdurl-0.1.2, multiqc-1.14, Pygments-2.14.0, rich-13.3.1, rich-click-1.6.1, spectra-0.0.11"}, "MultiQC/1.8-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.1.1, monotonic-1.5, multiqc-1.8, networkx-2.2, simplejson-3.17.0, spectra-0.0.11"}, "MultiQC/1.8-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.2.1, multiqc-1.8, simplejson-3.17.0, spectra-0.0.11"}, "MultiQC/1.9-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.2.1, multiqc-1.9, simplejson-3.17.0, spectra-0.0.11"}}, "description": "Aggregate results from bioinformatics analyses across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.", "homepage": "https://multiqc.info"}, "MUMmer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MUMmer/4.0.0beta2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MUMmer/4.0.0rc1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMmer/4.0.0beta2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. AMOS makes use of it.", "homepage": "http://mummer.sourceforge.net/"}, "MUMPS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MUMPS/5.2.1-foss-2019b-metis": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MUMPS/5.4.1-foss-2021b-metis": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MUMPS/5.4.1-intel-2021b-metis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMPS/5.5.1-foss-2022a-metis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMPS/5.6.1-foss-2022b-metis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMPS/5.6.1-foss-2023a-metis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMPS/5.2.1-foss-2020a-metis": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MUMPS/5.2.1-intel-2019b-metis": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MUMPS/5.2.1-intel-2020a-metis": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MUMPS/5.3.5-foss-2020b-metis": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUMPS/5.4.0-foss-2021a-metis": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A parallel sparse direct solver", "homepage": "https://graal.ens-lyon.fr/MUMPS/"}, "muParser": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"muParser/2.3.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "muParser/2.3.2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "muParser is an extensible high performance math expression parser library written in C++. It works by transforming a mathematical expression into bytecode and precalculating constant parts of the expression.", "homepage": "https://beltoforion.de/article.php?a=muparser"}, "MUSCLE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MUSCLE/3.8.31-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MUSCLE/5.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "MUSCLE/5.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUSCLE/5.1.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUSCLE/3.8.31-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "MUSCLE/3.8.1551-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MUSCLE/3.8.1551-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks.", "homepage": "https://drive5.com/muscle/"}, "MXNet": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MXNet/1.9.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Flexible and Efficient Library for Deep Learning", "homepage": "https://mxnet.io/"}, "mygene": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mygene/3.2.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "biothings_client-0.2.6, mygene-3.2.2"}, "mygene/3.2.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "biothings_client-0.3.1, mygene-3.2.2"}}, "description": "Python Client for MyGene.Info services.", "homepage": "https://github.com/biothings/mygene.py"}, "mysqlclient": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"mysqlclient/2.1.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Python interface to MySQL", "homepage": "https://github.com/PyMySQL/mysqlclient-python"}, "n2v": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"n2v/0.3.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "n2v-0.3.2"}, "n2v/0.3.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "n2v-0.3.2"}}, "description": "Learning Denoising from Single Noisy Images", "homepage": "https://github.com/juglab/n2v"}, "NAMD": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NAMD/2.14-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}, "NAMD/2.14-foss-2023a-mpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.", "homepage": "https://www.ks.uiuc.edu/Research/namd/"}, "NanoCaller": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NanoCaller/3.4.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "NanoCaller is a computational method that integrates long reads in deep convolutional neural network for the detection of SNPs/indels from long-read sequencing data.", "homepage": "https://github.com/WGLab/NanoCaller"}, "nanoget": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nanoget/1.18.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nanoget/1.18.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nanoget/1.12.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "nanoget/1.15.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Functions to extract information from Oxford Nanopore sequencing data and alignments", "homepage": "https://github.com/wdecoster/nanoget"}, "nanomath": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nanomath/1.2.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "nanomath-1.2.1, Python-Deprecated-1.1.0"}, "nanomath/1.3.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "nanomath-1.3.0, Python-Deprecated-1.1.0"}, "nanomath/0.23.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "nanomath/1.2.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "nanomath-1.2.0, Python-Deprecated-1.1.0"}}, "description": "A few simple math function for other Oxford Nanopore processing scripts", "homepage": "https://github.com/wdecoster/nanomath"}, "nanopolish": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nanopolish/0.14.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nanopolish/0.13.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "nanopolish/0.13.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Software package for signal-level analysis of Oxford Nanopore sequencing data.", "homepage": "https://github.com/jts/nanopolish"}, "NanoStat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NanoStat/1.6.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "NanoStat-1.6.0"}, "NanoStat/1.6.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "NanoStat-1.6.0"}}, "description": "Calculate various statistics from a long read sequencing dataset in fastq, bam or albacore sequencing summary format.", "homepage": "https://github.com/wdecoster/nanostat"}, "napari": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"napari/0.4.15-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "beniget-0.4.1, build-0.8.0, cachey-0.2.1, docstring-parser-0.14.1, freetype_py-2.3.0, gast-0.5.3, hsluv-5.0.3, magicgui-0.5.1, napari-0.4.15, napari-console-0.0.4, napari-plugin-engine-0.2.0, napari-svg-0.1.6, npe2-0.5.0, numpydoc-1.4.0, pep517-0.12.0, Pint-0.19.2, ply-3.11, psygnal-0.3.5, pydantic-1.9.1, pythran-0.10.0, pytomlpp-1.0.10, superqt-0.3.2, tifffile-2022.5.4, tomli-2.0.1, typer-0.4.1, vispy-0.10.0, wrapt-1.12.1"}, "napari/0.4.18-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "app-model-0.1.1, build-0.10.0, cachey-0.2.1, docstring_parser-0.15, in_n_out-0.1.8, lazy_loader-0.3, magicgui-0.6.1, markdown-it-py-2.1.0, mdurl-0.1.2, mypy_extensions-1.0.0, napari-0.4.18, napari-console-0.0.8, napari-plugin-engine-0.2.0, napari-svg-0.1.10, npe2-0.7.2, numpydoc-1.5.0, psygnal-0.9.2, pyproject_hooks-1.0.0, rich-13.2.0, superqt-0.5.0, tornado-6.1, typer-0.7.0"}}, "description": "napari is a fast, interactive, multi-dimensional image viewer for Python. It's designed for browsing, annotating, and analyzing large multi-dimensional images.It's built on top of Qt (for the GUI), vispy (for performant GPU-based rendering), and the scientific Python stack (numpy, scipy).", "homepage": "https://napari.org/"}, "NASM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NASM/2.14.02-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "NASM/2.15.05-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NASM/2.15.05-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NASM/2.15.05-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NASM/2.15.05-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NASM/2.15.05-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NASM/2.16.01-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NASM/2.16.01-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NASM/2.14.02-GCCcore-8.2.0": {"clusters": ["doduo"]}, "NASM/2.14.02-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "NASM: General-purpose x86 assembler", "homepage": "https://www.nasm.us/"}, "ncbi-vdb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ncbi-vdb/2.11.2-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncbi-vdb/3.0.0-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncbi-vdb/3.0.2-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncbi-vdb/2.10.7-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ncbi-vdb/2.10.9-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.", "homepage": "https://github.com/ncbi/ncbi-vdb"}, "NCCL": {"clusters": ["accelgor", "donphan", "joltik", "skitty"], "versions": {"NCCL/2.8.3-GCCcore-10.2.0-CUDA-11.1.1": {"clusters": ["accelgor", "joltik", "skitty"]}, "NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}, "NCCL/2.10.3-GCCcore-11.2.0-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"]}, "NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "NCCL/2.18.3-GCCcore-12.3.0-CUDA-12.1.1": {"clusters": ["accelgor", "donphan", "joltik"]}, "NCCL/2.8.3-CUDA-11.1.1": {"clusters": ["joltik"]}}, "description": "The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collectivecommunication primitives that are performance optimized for NVIDIA GPUs.", "homepage": "https://developer.nvidia.com/nccl"}, "ncdf4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ncdf4/1.17-foss-2020b-R-4.0.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncdf4/1.17-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ncdf4/1.17-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ncdf4/1.17-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ncdf4: Interface to Unidata netCDF (version 4 or earlier) format data files", "homepage": "https://cran.r-project.org/web/packages/ncdf4"}, "ncolor": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ncolor/1.2.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "edt-2.3.1, fastremap-1.13.5, ncolor-1.2.1"}}, "description": "Fast remapping of instance labels 1,2,3,...,M toa smaller set of repeating, disjoint labels, 1,2,...,N.", "homepage": "https://github.com/kevinjohncutler/ncolor"}, "ncurses": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ncurses/6.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.2-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.4-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ncurses/6.1-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.", "homepage": "http://www.gnu.org/software/ncurses/"}, "NECI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NECI/20230620-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NECI/20220711-foss-2022a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Standalone NECI codebase designed for FCIQMC and other stochastic quantumchemistry methods.", "homepage": "https://github.com/ghb24/NECI_STABLE"}, "netCDF-C++4": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"netCDF-C++4/4.3.1-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "netCDF-C++4/4.3.1-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF-C++4/4.3.1-gompi-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF-C++4/4.3.1-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF-C++4/4.3.1-iimpi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.", "homepage": "https://www.unidata.ucar.edu/software/netcdf/"}, "netCDF-Fortran": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"netCDF-Fortran/4.5.3-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF-Fortran/4.5.3-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF-Fortran/4.6.0-gompi-2022a": {"clusters": ["accelgor", "donphan", "joltik"]}, "netCDF-Fortran/4.5.2-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF-Fortran/4.5.2-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF-Fortran/4.5.2-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF-Fortran/4.5.2-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF-Fortran/4.5.3-gompi-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF-Fortran/4.5.3-iimpi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF-Fortran/4.6.0-iimpi-2022a": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.", "homepage": "https://www.unidata.ucar.edu/software/netcdf/"}, "netCDF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"netCDF/4.7.1-gompi-2019b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "netCDF/4.7.4-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF/4.8.0-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF/4.8.1-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF/4.8.1-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF/4.9.0-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF/4.9.0-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF/4.9.2-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF/4.7.1-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF/4.7.4-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF/4.7.4-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF/4.7.4-iimpi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "netCDF/4.8.0-iimpi-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "netCDF/4.9.0-iimpi-2022a": {"clusters": ["donphan", "joltik", "skitty"]}, "netCDF/4.7.4-gompic-2020b": {"clusters": ["joltik"]}}, "description": "NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.", "homepage": "https://www.unidata.ucar.edu/software/netcdf/"}, "netcdf4-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"netcdf4-python/1.5.7-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cftime-1.5.0, netcdf4-python-1.5.7"}, "netcdf4-python/1.5.7-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cftime-1.5.0, netcdf4-python-1.5.7"}, "netcdf4-python/1.5.7-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "cftime-1.5.0, netcdf4-python-1.5.7"}, "netcdf4-python/1.6.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cftime-1.6.2, netcdf4-python-1.6.1"}, "netcdf4-python/1.6.4-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cftime-1.6.2, netcdf4-python-1.6.4"}, "netcdf4-python/1.5.3-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cftime-1.1.1.2, netcdf4-python-1.5.3"}, "netcdf4-python/1.5.3-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cftime-1.2.0, netcdf4-python-1.5.3"}, "netcdf4-python/1.5.3-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cftime-1.1.1.2, netcdf4-python-1.5.3"}, "netcdf4-python/1.5.3-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cftime-1.2.0, netcdf4-python-1.5.3"}, "netcdf4-python/1.5.5.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cftime-1.2.0, netcdf4-python-1.5.5.1"}, "netcdf4-python/1.5.5.1-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "cftime-1.4.1, netcdf4-python-1.5.5.1"}}, "description": "Python/numpy interface to netCDF.", "homepage": "https://unidata.github.io/netcdf4-python/"}, "NetPyNE": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"NetPyNE/1.0.2.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "contextlib2-21.6.0, LFPykit-0.4, matplotlib-scalebar-0.8.1, MEAutility-1.5.1, netpyne-1.0.2.1, schema-0.7.5"}}, "description": "NetPyNE is an open-source Python package to facilitate the development, parallel simulation, analysis,and optimization of biological neuronal networks using the NEURON simulator.", "homepage": "http://www.netpyne.org"}, "nettle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nettle/3.5.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "nettle/3.6-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nettle/3.7.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nettle/3.7.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nettle/3.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nettle/3.8.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nettle/3.9.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nettle/3.4.1-GCCcore-8.2.0": {"clusters": ["doduo"]}, "nettle/3.6-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.", "homepage": "https://www.lysator.liu.se/~nisse/nettle/"}, "networkx": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"networkx/2.5-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "networkx/2.5.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "networkx/2.6.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "networkx/2.8.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "networkx/2.8.4-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "networkx/3.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "networkx/3.0-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "networkx/3.1-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "networkx/2.4-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "networkx/2.4-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "networkx/2.4-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "networkx/2.4-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "networkx/2.5-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "NetworkX is a Python package for the creation, manipulation,and study of the structure, dynamics, and functions of complex networks.", "homepage": "https://pypi.python.org/pypi/networkx"}, "NEURON": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"NEURON/7.8.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Empirically-based simulations of neurons and networks of neurons.", "homepage": "https://www.neuron.yale.edu/neuron"}, "Nextflow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Nextflow/22.10.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Nextflow/22.10.5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Nextflow/23.04.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Nextflow/23.10.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Nextflow/20.10.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Nextflow/21.03.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Nextflow/21.10.6": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Nextflow/19.12.0": {"clusters": ["donphan", "joltik", "skitty"]}, "Nextflow/20.01.0": {"clusters": ["donphan", "joltik", "skitty"]}, "Nextflow/20.04.1": {"clusters": ["donphan", "joltik", "skitty"]}, "Nextflow/21.08.0": {"clusters": ["skitty"]}}, "description": "Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data", "homepage": "https://www.nextflow.io"}, "NextGenMap": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"NextGenMap/0.5.5-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime.", "homepage": "http://cibiv.github.io/NextGenMap/"}, "nghttp2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nghttp2/1.48.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "This is an implementation of the Hypertext Transfer Protocol version 2 in C.The framing layer of HTTP/2 is implemented as a reusable C library. On top of that, we have implemented an HTTP/2 client, server and proxy. We have also developed load test and benchmarking tools for HTTP/2.An HPACK encoder and decoder are available as a public API.", "homepage": "https://github.com/nghttp2/nghttp2"}, "nghttp3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nghttp3/0.6.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 QPACK in C.It does not depend on any particular QUIC transport implementation.", "homepage": "https://github.com/ngtcp2/nghttp3"}, "nglview": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nglview/2.7.7-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "nglview-2.7.7, widgetsnbextension-3.5.1"}}, "description": "IPython widget to interactively view molecular structures and trajectories.", "homepage": "https://github.com/arose/nglview"}, "NGS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NGS/2.11.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NGS/2.10.4-GCCcore-8.3.0-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "NGS/2.10.5-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "NGS/2.10.9-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "NGS is a new, domain-specific API for accessing reads, alignments and pileupsproduced from Next Generation Sequencing.", "homepage": "https://github.com/ncbi/ngs"}, "NGSpeciesID": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"NGSpeciesID/0.1.2.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "NGSpeciesID/0.1.1.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "NGSpeciesID is a tool for clustering and consensus forming of targeted ONT reads.", "homepage": "https://github.com/ksahlin/NGSpeciesID"}, "ngtcp2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ngtcp2/0.7.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "'Call it TCP/2. One More Time.'ngtcp2 project is an effort to implement RFC9000 QUIC protocol.", "homepage": "https://github.com/ngtcp2/ngtcp2"}, "NiBabel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NiBabel/3.2.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "bz2file-0.98, nibabel-3.2.1"}, "NiBabel/3.2.1-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "bz2file-0.98, nibabel-3.2.1"}, "NiBabel/4.0.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bz2file-0.98, nibabel-4.0.2"}, "NiBabel/3.1.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bz2file-0.98, nibabel-3.1.0, pydicom-1.4.2"}, "NiBabel/3.2.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bz2file-0.98, nibabel-3.2.1"}}, "description": "NiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.", "homepage": "https://nipy.github.io/nibabel"}, "nichenetr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nichenetr/1.1.1-20230223-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nichenetr/2.0.4-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "R implementation of the NicheNet method, to predict active ligand-target links between interacting cells", "homepage": "https://github.com/saeyslab/nichenetr"}, "Nim": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Nim/1.6.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Nim/1.4.6-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Nim is a systems and applications programming language.", "homepage": "https://nim-lang.org/"}, "Ninja": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Ninja/1.9.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Ninja/1.10.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ninja/1.10.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ninja/1.10.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ninja/1.10.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ninja/1.10.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ninja/1.11.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ninja/1.11.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ninja/1.11.1-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Ninja/1.9.0-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Ninja is a small build system with a focus on speed.", "homepage": "https://ninja-build.org/"}, "Nipype": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Nipype/1.8.5-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "ci-info-0.3.0, etelemetry-0.3.0, funcsigs-1.0.2, looseversion-1.0.2, nipype-1.8.5, prov-2.0.0, pydotplus-2.0.2, traits-6.3.2"}, "Nipype/1.4.2-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "apipkg-1.5, ci-info-0.2.0, etelemetry-0.2.1, execnet-1.7.1, filelock-3.0.12, funcsigs-1.0.2, isodate-0.6.0, nipype-1.4.2, prov-1.5.3, pydot-1.4.1, pydotplus-2.0.2, pytest-forked-1.1.3, pytest-xdist-1.31.0, rdflib-5.0.0, simplejson-3.17.0, traits-6.0.0"}}, "description": "Nipype is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow.", "homepage": "https://nipype.readthedocs.io"}, "nlohmann_json": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nlohmann_json/3.10.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nlohmann_json/3.11.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nlohmann_json/3.11.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "JSON for Modern C++", "homepage": "https://github.com/nlohmann/json"}, "NLopt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NLopt/2.6.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NLopt/2.7.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NLopt/2.7.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NLopt/2.7.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NLopt/2.7.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NLopt/2.7.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NLopt/2.6.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "NLopt/2.6.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.", "homepage": "http://ab-initio.mit.edu/wiki/index.php/NLopt"}, "NLTK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NLTK/3.8.1-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "NLTK-3.8.1, python-crfsuite-0.9.10, regex-2023.12.25"}}, "description": "NLTK is a leading platform for building Python programs to work with human language data.", "homepage": "https://www.nltk.org/"}, "nnU-Net": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nnU-Net/1.7.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "batchgenerators-0.23, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, immutabledict-2.1.0, linecache2-1.0.0, ml_collections-0.1.0, nnunet-1.7.0, tifffile-2021.8.30, traceback2-1.4.0, unittest2-1.1.0"}, "nnU-Net/1.7.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "batchgenerators-0.23, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, immutabledict-2.1.0, linecache2-1.0.0, ml_collections-0.1.0, nnunet-1.7.0, tifffile-2021.8.30, traceback2-1.4.0, unittest2-1.1.0"}}, "description": "nnU-Net is the first segmentation method that is designed to deal with the dataset diversity found in the domain It condenses and automates the keys decisions for designing a successful segmentation pipeline for any given dataset.", "homepage": "https://github.com/MIC-DKFZ/nnUNet"}, "nodejs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nodejs/12.19.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nodejs/14.17.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nodejs/14.17.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nodejs/16.15.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nodejs/18.12.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nodejs/18.17.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nodejs/12.16.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.", "homepage": "https://nodejs.org"}, "noise": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"noise/1.2.2-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "noise-1.2.2"}}, "description": "Native-code and shader implementations of Perlin noise for Python", "homepage": "https://github.com/caseman/noise"}, "NSPR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NSPR/4.21-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "NSPR/4.29-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSPR/4.30-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSPR/4.32-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSPR/4.34-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSPR/4.35-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSPR/4.35-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSPR/4.25-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.", "homepage": "https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR"}, "NSS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"NSS/3.45-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "NSS/3.57-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSS/3.65-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSS/3.69-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSS/3.79-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSS/3.85-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSS/3.89.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "NSS/3.51-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.", "homepage": "https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS"}, "nsync": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"nsync/1.24.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nsync/1.24.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nsync/1.24.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nsync/1.25.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nsync/1.26.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nsync/1.26.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "nsync/1.24.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "nsync/1.24.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "nsync is a C library that exports various synchronization primitives, such as mutexes", "homepage": "https://github.com/google/nsync"}, "ntCard": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ntCard/1.2.2-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ntCard/1.2.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "ntCard is a streaming algorithm for estimating the frequencies of k-mers in genomics datasets.", "homepage": "https://www.bcgsc.ca/resources/software/ntcard"}, "num2words": {"clusters": ["accelgor", "joltik"], "versions": {"num2words/0.5.10-GCCcore-10.3.0": {"clusters": ["accelgor", "joltik"]}}, "description": "Modules to convert numbers to words. 42 --> forty-two", "homepage": "https://github.com/savoirfairelinux/num2words"}, "numactl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"numactl/2.0.12-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "numactl/2.0.13-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "numactl/2.0.13-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "numactl/2.0.14-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "numactl/2.0.14-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "numactl/2.0.14-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "numactl/2.0.16-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "numactl/2.0.16-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "numactl/2.0.16-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.", "homepage": "https://github.com/numactl/numactl"}, "numba": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"numba/0.47.0-foss-2019b-Python-3.7.4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "llvmlite-0.31.0, numba-0.47.0"}, "numba/0.53.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "llvmlite-0.36.0, numba-0.53.1"}, "numba/0.54.1-foss-2021b-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"], "extensions": "llvmlite-0.37.0, numba-0.54.1"}, "numba/0.54.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "llvmlite-0.37.0, numba-0.54.1"}, "numba/0.54.1-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "llvmlite-0.37.0, numba-0.54.1"}, "numba/0.56.4-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "llvmlite-0.39.1, numba-0.56.4"}, "numba/0.56.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "llvmlite-0.39.1, numba-0.56.4"}, "numba/0.58.1-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "llvmlite-0.41.1, numba-0.58.1"}, "numba/0.58.1-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "llvmlite-0.41.1, numba-0.58.1"}, "numba/0.50.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "llvmlite-0.33.0, numba-0.50.0"}, "numba/0.50.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "llvmlite-0.33.0, numba-0.50.0"}, "numba/0.52.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "llvmlite-0.35.0, numba-0.52.0"}, "numba/0.52.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "llvmlite-0.35.0, numba-0.52.0"}, "numba/0.53.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "llvmlite-0.36.0, numba-0.53.1"}, "numba/0.52.0-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "llvmlite-0.35.0, numba-0.52.0"}, "numba/0.53.1-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "llvmlite-0.36.0, numba-0.53.1"}}, "description": "Numba is an Open Source NumPy-aware optimizing compiler forPython sponsored by Continuum Analytics, Inc. It uses the remarkable LLVMcompiler infrastructure to compile Python syntax to machine code.", "homepage": "https://numba.pydata.org/"}, "numexpr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"numexpr/2.7.1-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "numexpr/2.7.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "numexpr/2.7.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "numexpr/2.7.1-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "skitty"]}}, "description": "The numexpr package evaluates multiple-operator array expressions many times faster than NumPy can. It accepts the expression as a string, analyzes it, rewrites it more efficiently, and compiles it on the fly into code for its internal virtual machine (VM). Due to its integrated just-in-time (JIT) compiler, it does not require a compiler at runtime.", "homepage": "https://numexpr.readthedocs.io/en/latest/"}, "NVHPC": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"NVHPC/21.2": {"clusters": ["accelgor", "donphan", "joltik"]}, "NVHPC/20.9": {"clusters": ["joltik"]}}, "description": "C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)", "homepage": "https://developer.nvidia.com/hpc-sdk/"}, "nvtop": {"clusters": ["accelgor"], "versions": {"nvtop/1.2.1-GCCcore-10.3.0": {"clusters": ["accelgor"]}}, "description": "htop-like GPU usage monitor", "homepage": "https://github.com/Syllo/nvtop"}, "Oases": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Oases/20180312-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly.", "homepage": "http://www.ebi.ac.uk/~zerbino/oases/"}, "OBITools3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OBITools3/3.0.1b26-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A package for the management of analyses and data in DNA metabarcoding.", "homepage": "https://metabarcoding.org/obitools3"}, "olaFlow": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"olaFlow/20210820-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "olaFlow CFD Suite is a free and open source project committed to bringing the latestadvances for the simulation of wave dynamics to the OpenFOAM\u00ae and FOAM-extend communities.", "homepage": "https://olaflow.github.io/"}, "olego": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"olego/1.1.9-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adoptsa seed-and-extend scheme, and does not rely on a separate external mapper.", "homepage": "https://github.com/chaolinzhanglab/olego"}, "Omnipose": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Omnipose/0.4.4-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "cachetools-5.3.1, cellpose-omni-0.9.1, edt-2.3.1, fastremap-1.13.5, google-api-core-2.11.1, google-auth-2.22.0, google-cloud-core-2.3.3, google-cloud-storage-2.10.0, google-crc32c-1.5.0, google-resumable-media-2.5.0, googleapis-common-protos-1.59.1, natsort-8.3.1, omnipose-0.4.4, pyasn1-modules-0.2.8, roifile-2023.5.12, rsa-4.9, tifffile-2023.4.12"}, "Omnipose/0.4.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cachetools-5.3.1, cellpose-omni-0.9.1, edt-2.3.1, fastremap-1.13.5, google-api-core-2.11.1, google-auth-2.22.0, google-cloud-core-2.3.3, google-cloud-storage-2.10.0, google-crc32c-1.5.0, google-resumable-media-2.5.0, googleapis-common-protos-1.59.1, natsort-8.3.1, omnipose-0.4.4, pyasn1-modules-0.2.8, roifile-2023.5.12, rsa-4.9, tifffile-2023.4.12"}}, "description": "Omnipose is a general image segmentation tool that builds on Cellpose in a number of waysdescribed in our paper. It works for both 2D and 3D images and on any imaging modality orcell shape, so long as you train it on representative images.", "homepage": "https://omnipose.readthedocs.io"}, "onedrive": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"onedrive/2.4.21-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "A free Microsoft OneDrive Client which supports OneDrive Personal, OneDrive for Business,OneDrive for Office365 and SharePoint.", "homepage": "https://abraunegg.github.io/"}, "ONNX-Runtime": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ONNX-Runtime/1.16.3-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "coloredlogs-15.0.1, humanfriendly-10.0, ONNX-Runtime-1.16.3"}}, "description": "ONNX Runtime inference can enable faster customer experiences and lower costs,supporting models from deep learning frameworks such as PyTorch andTensorFlow/Keras as well as classical machine learning libraries such asscikit-learn, LightGBM, XGBoost, etc. ONNX Runtime is compatible with differenthardware, drivers, and operating systems, and provides optimal performance byleveraging hardware accelerators where applicable alongside graph optimizationsand transforms.", "homepage": "https://onnxruntime.ai"}, "ONNX": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ONNX/1.15.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Open Neural Network Exchange (ONNX) is an open ecosystem that empowers AIdevelopers to choose the right tools as their project evolves. ONNX provides anopen source format for AI models, both deep learning and traditional ML. Itdefines an extensible computation graph model, as well as definitions ofbuilt-in operators and standard data types. Currently we focus on thecapabilities needed for inferencing (scoring).", "homepage": "https://onnx.ai"}, "ont-fast5-api": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ont-fast5-api/4.0.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "ont-fast5-api-4.0.0, progressbar33-2.4"}, "ont-fast5-api/4.0.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "ont-fast5-api-4.0.2, progressbar33-2.4"}, "ont-fast5-api/4.1.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ont-fast5-api-4.1.1, progressbar33-2.4"}, "ont-fast5-api/4.1.1-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ont-fast5-api-4.1.1, progressbar33-2.4"}, "ont-fast5-api/3.3.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "ont-fast5-api-3.3.0, progressbar33-2.4"}, "ont-fast5-api/3.3.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "ont-fast5-api-3.3.0, progressbar33-2.4"}, "ont-fast5-api/3.3.0-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "ont-fast5-api-3.3.0, progressbar33-2.4"}}, "description": "ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore .fast5 file format.", "homepage": "https://github.com/nanoporetech/ont_fast5_api"}, "OpenBabel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenBabel/3.1.1-iimpi-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.", "homepage": "https://openbabel.org"}, "OpenBLAS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenBLAS/0.3.7-GCC-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OpenBLAS/0.3.12-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenBLAS/0.3.15-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenBLAS/0.3.18-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenBLAS/0.3.20-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenBLAS/0.3.21-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenBLAS/0.3.23-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenBLAS/0.3.24-GCC-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenBLAS/0.3.9-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.", "homepage": "https://xianyi.github.com/OpenBLAS/"}, "OpenCV": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenCV/4.5.1-fosscuda-2020b-contrib": {"clusters": ["accelgor", "joltik"]}, "OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib": {"clusters": ["accelgor", "joltik"]}, "OpenCV/4.5.5-foss-2021b-contrib": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OpenCV/4.6.0-foss-2022a-contrib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenCV/4.6.0-foss-2022a-CUDA-11.7.0-contrib": {"clusters": ["accelgor", "donphan", "joltik"]}, "OpenCV/4.2.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenCV/4.5.1-foss-2020b-contrib": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenCV/4.5.3-foss-2021a-contrib": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository.", "homepage": "https://opencv.org/"}, "OpenEXR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenEXR/2.5.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenEXR/3.0.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OpenEXR/3.1.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OpenEXR/3.1.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenEXR/3.1.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenEXR/3.1.7-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenEXR/2.4.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications", "homepage": "https://www.openexr.com/"}, "OpenFOAM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenFOAM/v2106-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenFOAM/v2112-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenFOAM/v2206-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenFOAM/7-foss-2019b-20200508": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM/8-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenFOAM/9-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenFOAM/10-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenFOAM/10-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenFOAM/v1906-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM/v1912-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM/v2006-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM/v2012-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM/2.3.1-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM/5.0-20180606-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM/6-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM/7-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM/8-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM/8-intel-2020b": {"clusters": ["doduo"]}, "OpenFOAM/9-intel-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.", "homepage": "https://www.openfoam.org/"}, "OpenFold": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"OpenFold/1.0.0-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "contextlib2-21.6.0, deepspeed-0.5.9, dllogger-1.0.0, hjson-3.0.2, ml_collections-0.1.0, ninja-1.10.2.3, OpenFold-1.0.0, PDBFixer-1.7, py-cpuinfo-8.0.0, triton-1.0.0"}, "OpenFold/1.0.1-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "contextlib2-21.6.0, deepspeed-0.5.9, dllogger-1.0.0, flash_attn-0.2.8, hjson-3.0.2, ml_collections-0.1.0, ninja-1.10.2.3, OpenFold-1.0.1, PDBFixer-1.7, py-cpuinfo-8.0.0, triton-1.0.0"}, "OpenFold/1.0.1-foss-2022a-CUDA-11.7.0": {"clusters": ["donphan"], "extensions": "contextlib2-21.6.0, deepspeed-0.5.10, dllogger-1.0.0, flash_attn-0.2.8, hjson-3.0.2, ml_collections-0.1.0, ninja-1.10.2.3, OpenFold-1.0.1, PDBFixer-1.8.1, py-cpuinfo-8.0.0"}}, "description": "A faithful PyTorch reproduction of DeepMind's AlphaFold 2", "homepage": "https://github.com/aqlaboratory/openfold"}, "OpenJPEG": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenJPEG/2.4.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OpenJPEG/2.4.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenJPEG/2.5.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenJPEG/2.5.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenJPEG/2.5.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.", "homepage": "https://www.openjpeg.org/"}, "OpenMM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenMM/7.5.0-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMM/7.5.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "OpenMM/7.5.1-foss-2021a-CUDA-11.3.1-DeepMind-patch": {"clusters": ["accelgor", "joltik"]}, "OpenMM/7.5.1-foss-2021a-DeepMind-patch": {"clusters": ["accelgor", "donphan", "joltik"]}, "OpenMM/7.5.1-foss-2021b-CUDA-11.4.1-DeepMind-patch": {"clusters": ["accelgor", "joltik"]}, "OpenMM/7.5.1-foss-2021b-DeepMind-patch": {"clusters": ["accelgor", "donphan", "joltik"]}, "OpenMM/7.5.1-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "OpenMM/7.7.0-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}, "OpenMM/7.7.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OpenMM/7.7.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMM/8.0.0-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"]}, "OpenMM/8.0.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMM/7.4.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenMM/7.4.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenMM/7.4.2-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenMM/7.5.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenMM/7.5.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenMM/7.7.0-foss-2022a-CUDA-11.7.0": {"clusters": ["donphan"]}}, "description": "OpenMM is a toolkit for molecular simulation.", "homepage": "https://openmm.org"}, "OpenMolcas": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenMolcas/21.06-iomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMolcas/21.06-intel-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenMolcas is a quantum chemistry software package", "homepage": "https://gitlab.com/Molcas/OpenMolcas"}, "OpenMPI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenMPI/3.1.4-GCC-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.0.5-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.0.5-gcccuda-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.0.5-iccifort-2020.4.304": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.0.5-NVHPC-21.2-CUDA-11.2.1": {"clusters": ["accelgor", "donphan", "joltik"]}, "OpenMPI/4.1.1-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.1.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.1.1-intel-compilers-2021.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.1.4-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.1.4-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.1.5-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.1.6-GCC-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/3.1.4-GCC-8.3.0-ucx": {"clusters": ["doduo"]}, "OpenMPI/4.0.3-GCC-9.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenMPI/4.0.3-iccifort-2020.1.217": {"clusters": ["doduo"]}}, "description": "The Open MPI Project is an open source MPI-3 implementation.", "homepage": "https://www.open-mpi.org/"}, "OpenPGM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenPGM/5.2.122-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenPGM/5.2.122-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenPGM/5.2.122-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenPGM/5.2.122-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenPGM/5.2.122-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenPGM/5.2.122-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenPGM/5.2.122-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OpenPGM/5.2.122-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.", "homepage": "https://code.google.com/p/openpgm/"}, "openpyxl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"openpyxl/3.0.7-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.0.7"}, "openpyxl/3.0.9-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.0.9"}, "openpyxl/3.0.10-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.0.10"}, "openpyxl/3.1.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.1.2"}, "openpyxl/3.1.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.1.2"}, "openpyxl/3.1.2-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.1.2"}, "openpyxl/2.6.4-GCCcore-8.3.0-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "et_xmlfile-1.0.1, jdcal-1.4.1, openpyxl-2.6.4"}}, "description": "A Python library to read/write Excel 2010 xlsx/xlsm files", "homepage": "https://openpyxl.readthedocs.io"}, "OpenSlide-Java": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenSlide-Java/0.12.4-GCCcore-12.3.0-Java-17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "This is a Java binding to OpenSlide.", "homepage": "https://github.com/openslide/openslide-java"}, "openslide-python": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"openslide-python/1.1.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "openslide-python/1.1.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "openslide-python/1.2.0-GCCcore-11.3.0": {"clusters": ["accelgor", "donphan", "joltik"]}}, "description": "OpenSlide Python is a Python interface to the OpenSlide library.", "homepage": "https://github.com/openslide/openslide-python"}, "OpenSlide": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenSlide/3.4.1-GCCcore-10.3.0-largefiles": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OpenSlide/3.4.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OpenSlide/3.4.1-GCCcore-11.3.0-largefiles": {"clusters": ["accelgor", "donphan", "joltik"]}, "OpenSlide/3.4.1-GCCcore-12.3.0-largefiles": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "OpenSlide is a C library that provides a simple interface toread whole-slide images (also known as virtual slides).", "homepage": "https://openslide.org/"}, "OpenSSL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OpenSSL/1.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.", "homepage": "https://www.openssl.org/"}, "Optuna": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Optuna/3.1.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "%(namelower)s-3.1.0, alembic-1.9.3, cmaes-0.9.1, colorlog-6.7.0, SQLAlchemy-2.0.3"}}, "description": "Optuna is an automatic hyperparameter optimization software framework,particularly designed for machine learning. It features an imperative,define-by-run style user API. Thanks to our define-by-run API, the code writtenwith Optuna enjoys high modularity, and the user of Optuna can dynamicallyconstruct the search spaces for the hyperparameters.", "homepage": "https://optuna.org/"}, "ORCA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ORCA/5.0.2-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ORCA/5.0.3-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ORCA/5.0.4-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ORCA/4.2.0-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ORCA/4.2.1-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.", "homepage": "https://orcaforum.kofo.mpg.de"}, "OrthoFinder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OrthoFinder/2.5.5-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OrthoFinder/2.3.8-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OrthoFinder/2.3.11-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OrthoFinder/2.5.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "OrthoFinder/2.5.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics", "homepage": "https://github.com/davidemms/OrthoFinder"}, "Osi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Osi/0.108.7-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Osi/0.108.8-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Osi/0.108.9-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Osi (Open Solver Interface) provides an abstract base class to a generic linearprogramming (LP) solver, along with derived classes for specific solvers. Manyapplications may be able to use the Osi to insulate themselves from a specificLP solver. That is, programs written to the OSI standard may be linked to anysolver with an OSI interface and should produce correct results. The OSI hasbeen significantly extended compared to its first incarnation. Currently, theOSI supports linear programming solvers and has rudimentary support for integerprogramming.", "homepage": "https://github.com/coin-or/Osi"}, "OSU-Micro-Benchmarks": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"OSU-Micro-Benchmarks/5.7.1-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.8-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/7.1-1-iimpi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/7.2-gompi-2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.6.3-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.6.3-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.6.3-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.6.3-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.6.3-iimpi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/7.1-1-gompi-2023a": {"clusters": ["doduo"]}, "OSU-Micro-Benchmarks/5.6.3-gompi-2020b": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.7-gompi-2020b": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.7-iimpi-2020b": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.7.1-iimpi-2021a": {"clusters": ["donphan", "joltik", "skitty"]}, "OSU-Micro-Benchmarks/5.7.1-iompi-2021a": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "OSU Micro-Benchmarks", "homepage": "https://mvapich.cse.ohio-state.edu/benchmarks/"}, "p11-kit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"p11-kit/0.24.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "p11-kit/0.24.0-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process.", "homepage": "https://p11-glue.freedesktop.org/p11-kit.html"}, "pairtools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"pairtools/0.3.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "pairtools is a simple and fast command-line framework to process sequencing data from a Hi-C experiment.", "homepage": "https://github.com/mirnylab/pairtools"}, "Pango": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pango/1.44.7-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Pango/1.47.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.48.5-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.48.8-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.50.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.50.12-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.50.14-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pango/1.44.7-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Pango is a library for laying out and rendering of text, with an emphasis on internationalization.Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in thecontext of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.", "homepage": "https://www.pango.org/"}, "parallel-fastq-dump": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"parallel-fastq-dump/0.6.6-GCCcore-9.3.0-SRA-Toolkit-3.0.0-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "parallel-fastq-dump/0.6.7-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "parallel-fastq-dump/0.6.6-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "parallel-fastq-dump/0.6.7-gompi-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "parallel fastq-dump wrapper", "homepage": "https://github.com/rvalieris/parallel-fastq-dump"}, "parallel": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"parallel/20220722-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "parallel/20230722-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "parallel/20190922-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "parallel/20200522-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "parallel/20210322-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "parallel/20210622-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "parallel/20210722-GCCcore-11.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "parallel: Build and execute shell commands in parallel", "homepage": "https://savannah.gnu.org/projects/parallel/"}, "parasail": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"parasail/2.4.3-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "parasail/2.5-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "parasail/2.6-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "parasail/2.4.1-foss-2019b": {"clusters": ["doduo"]}, "parasail/2.4.1-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "parasail/2.4.2-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "parasail/2.4.1-GCC-8.3.0": {"clusters": ["donphan", "joltik", "skitty"]}, "parasail/2.4.3-GCC-10.2.0": {"clusters": ["donphan", "joltik"]}}, "description": "parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and semi-global pairwise sequence alignment algorithms.", "homepage": "https://github.com/jeffdaily/parasail"}, "ParaView": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ParaView/5.6.2-foss-2019b-Python-3.7.4-mpi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ParaView/5.8.1-foss-2020b-mpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParaView/5.9.1-foss-2021a-mpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParaView/5.9.1-foss-2021b-mpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParaView/5.10.1-foss-2022a-mpi": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParaView/5.11.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParaView/5.4.1-foss-2019b-Python-2.7.16-mpi": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParaView/5.8.0-foss-2020a-Python-3.8.2-mpi": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParaView/5.8.1-intel-2020b-mpi": {"clusters": ["doduo"]}, "ParaView/5.9.1-intel-2021a-mpi": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ParaView is a scientific parallel visualizer.", "homepage": "https://www.paraview.org"}, "ParMETIS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ParMETIS/4.0.3-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ParMETIS/4.0.3-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParMETIS/4.0.3-gompi-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParMETIS/4.0.3-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParMETIS/4.0.3-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.", "homepage": "http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview"}, "Parsl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Parsl/2023.7.17-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "globus-sdk-3.25.0, parsl-2023.7.17, PyJWT-2.8.0, setproctitle-1.3.2, tblib-1.7.0, typeguard-2.13.3, types-paramiko-3.2.0.1, types-requests-2.31.0.2, types-six-1.16.21.9, types-urllib3-1.26.25.14, typing-extensions-4.7.1"}}, "description": "Parsl extends parallelism in Python beyond a single computer.You can use Parsl just like Python's parallel executors but across multiplecores and nodes. However, the real power of Parsl is in expressing multi-stepworkflows of functions. Parsl lets you chain functions together and will launcheach function as inputs and computing resources are available.", "homepage": "https://parsl-project.org/"}, "PASA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PASA/2.5.3-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.", "homepage": "https://github.com/PASApipeline/PASApipeline"}, "patchelf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"patchelf/0.13-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "patchelf/0.15.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "patchelf/0.17.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "patchelf/0.18.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "patchelf/0.18.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "patchelf/0.10-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "patchelf/0.12-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "patchelf/0.12-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.", "homepage": "https://github.com/NixOS/patchelf"}, "PBGZIP": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"PBGZIP/20160804-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Parallel Block GZIP", "homepage": "https://github.com/nh13/pbgzip"}, "pblat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pblat/2.5.1-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "When the query file format is fasta, you can specify many threads to process it. It can reduce run time linearly, and use almost equal memory as the original blat program. This is useful when you blat a big query file to a huge reference like human whole genome sequence.", "homepage": "https://github.com/icebert/pblat"}, "PCRE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PCRE/8.43-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PCRE/8.44-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.44-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.44-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.45-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.45-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.45-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE/8.45-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.", "homepage": "https://www.pcre.org/"}, "PCRE2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PCRE2/10.33-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PCRE2/10.35-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.36-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.37-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.40-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.40-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.42-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PCRE2/10.34-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PCRE2/10.36": {"clusters": ["doduo", "donphan", "joltik"]}, "PCRE2/10.32": {"clusters": ["donphan", "joltik"]}}, "description": "The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.", "homepage": "http://www.pcre.org/"}, "pdsh": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pdsh/2.34-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pdsh/2.34-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pdsh/2.34-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A high performance, parallel remote shell utility", "homepage": "https://github.com/chaos/pdsh"}, "peakdetect": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"peakdetect/1.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Simple peak detection library for Python based on Billauer's work and this gist.", "homepage": "https://github.com/avhn/peakdetect"}, "PEAR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PEAR/0.9.11-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PEAR/0.9.11-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory.", "homepage": "https://cme.h-its.org/exelixis/web/software/pear/"}, "Perl-bundle-CPAN": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.335, App::cpanminus-1.7046, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::COW-0.007, B::Hooks::EndOfScope-0.26, B::Lint-1.20, boolean-0.46, Business::ISBN-3.008, Business::ISBN::Data-20230516.001, Canary::Stability-2013, Capture::Tiny-0.48, Carp::Clan-6.08, Carp::Heavy-1.50, CGI-4.57, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Method::Modifiers-2.15, Class::Singleton-1.6, Class::Tiny-1.008, Class::Trigger-0.15, Class::XSAccessor-1.19, Clone-0.46, Clone::Choose-0.010, common::sense-3.75, Compress::Raw::Zlib-2.204, Config::General-2.65, Config::INI-0.029, Config::MVP-2.200013, Config::MVP::Reader::INI-2.101465, Config::Simple-4.58, Config::Tiny-2.29, Const::Exporter-1.2.2, Const::Fast-0.014, CPAN::Meta::Check-0.017, CPAN::Uploader-0.103018, CPANPLUS-0.9914, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.114, Data::Section-0.200008, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.59, DateTime::Locale-1.38, DateTime::TimeZone-2.60, DateTime::Tiny-1.07, DBD::CSV-0.60, DBD::SQLite-1.72, DBI-1.643, DBIx::Admin::CreateTable-2.11, DBIx::Admin::DSNManager-2.02, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.16, Devel::Cycle-1.12, Devel::FindPerl-0.016, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::Size-0.83, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.030, Email::Date::Format-1.008, Encode-3.19, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter::Declare-0.114, Exporter::Tiny-1.006002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.26, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.70, ExtUtils::ParseXS-3.44, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.16, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.15, File::Next-1.18, File::pushd-1.016, File::Remove-1.61, File::ShareDir-1.118, File::ShareDir::Install-0.14, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.014, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long::Descriptive-0.111, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9726, Graph::ReadWrite-2.10, Hash::Merge-0.302, Hash::Objectify-0.008, Heap-0.80, Hook::LexWrap-0.26, HTML::Entities::Interpolate-1.10, HTML::Form-6.11, HTML::Parser-3.81, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::CookieJar-0.014, HTTP::Cookies-6.10, HTTP::Daemon-6.16, HTTP::Date-6.05, HTTP::Message-6.44, HTTP::Negotiate-6.01, HTTP::Tiny-0.082, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Importer-0.026, Inline-0.86, IO::Compress::Zip-2.204, IO::HTML-1.004, IO::Socket::SSL-2.083, IO::String-1.08, IO::Stringy-2.113, IO::TieCombine-1.005, IO::Tty-1.17, IO::Tty-1.17, IPC::Cmd-1.04, IPC::Run-20220807.0, IPC::Run3-0.048, IPC::System::Simple-1.30, JSON-4.10, JSON::MaybeXS-1.004005, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.59, List::UtilsBy-0.12, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.71, Log::Dispatch::Array-1.005, Log::Dispatchouli-3.002, Log::Handler-0.90, Log::Log4perl-1.57, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.34, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.70, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.884, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-v1.013.1, MIME::Lite-3.033, MIME::Types-2.24, Mixin::Linewise::Readers-0.111, Mock::Quick-1.111, Module::Build-0.4234, Module::Build::Tiny-0.045, Module::Build::XSUtil-0.19, Module::CoreList-5.20230423, Module::Implementation-0.09, Module::Install-1.21, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000038, Module::Path-0.19, Module::Path-0.19, Module::Pluggable-5.2, Module::Runtime-0.016, Module::Runtime::Conflicts-0.003, Moo-2.005005, Moose-2.2203, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.007, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.203, MooseX::Types-0.50, MooseX::Types::Perl-0.101344, Mouse-v2.5.10, Mozilla::CA-20221114, MRO::Compat-0.15, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.15, Net::HTTP-6.22, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.92, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.18, Package::Stash-0.40, Package::Stash::XS-0.30, PadWalker-2.5, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.31, Params::ValidationCompiler-0.31, parent-0.241, Parse::RecDescent-1.967015, Parse::Yapp-1.21, Path::Tiny-0.144, PDF::API2-2.044, Perl::OSType-1.010, Perl::PrereqScanner-1.100, PerlIO::utf8_strict-0.010, Pod::Elemental-0.103006, Pod::Escapes-1.07, Pod::Eventual-0.094003, Pod::LaTeX-0.61, Pod::Man-5.01, Pod::Parser-1.66, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.45, Pod::Weaver-4.019, PPI-1.276, Readonly-2.05, Ref::Util-0.204, Regexp::Common-2017060201, Role::HasMessage-0.007, Role::Identifiable::HasIdent-0.009, Role::Tiny-2.002004, Scalar::Util-1.63, Scalar::Util::Numeric-0.40, Scope::Guard-0.21, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.036, Software::License-0.104003, Specio-0.48, Spiffy-0.46, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.25, strictures-2.000006, String::Errf-0.009, String::Flogger-1.101246, String::Formatter-1.235, String::Print-0.94, String::RewritePrefix-0.009, String::Truncate-1.100603, String::TtyLength-0.03, Sub::Exporter-0.989, Sub::Exporter::ForMethods-0.100055, Sub::Exporter::GlobExporter-0.006, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Info-0.002, Sub::Install-0.929, Sub::Name-0.27, Sub::Quote-2.006008, Sub::Uplevel-0.2800, SVG-2.87, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Linux::Device::CPU-0.7905, Sys::Info::Driver::Unknown-0.79, Sys::Info::Driver::Unknown::Device::CPU-0.79, Template-3.101, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.45, Term::Table-0.016, Term::UI-0.50, Test-1.26, Test2::Plugin::NoWarnings-0.09, Test2::Require::Module-0.000155, Test::Base-0.89, Test::CheckDeps-0.010, Test::ClassAPI-1.07, Test::CleanNamespaces-0.24, Test::Deep-1.204, Test::Differences-0.69, Test::Exception-0.43, Test::FailWarnings-0.008, Test::Fatal-0.017, Test::File-1.993, Test::File::ShareDir::Dist-1.001002, Test::Harness-3.44, Test::LeakTrace-0.17, Test::Memory::Cycle-1.06, Test::More::UTF8-0.05, Test::Most-0.38, Test::Needs-0.002010, Test::NoWarnings-1.06, Test::Object-0.08, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302195, Test::SubCalls-1.10, Test::Sys::Info-0.23, Test::Version-2.09, Test::Warn-0.37, Test::Warnings-0.031, Test::Without::Module-0.21, Test::YAML-1.07, Text::Aligner-0.16, Text::Balanced-2.06, Text::CSV-2.02, Text::CSV_XS-1.50, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::Soundex-3.05, Text::Table-1.135, Text::Table::Manifold-1.03, Text::Template-1.61, Throwable-1.001, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.35, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.31, Type::Tiny-2.004000, Types::Serialiser-1.01, Types::Serialiser-1.01, Unicode::EastAsianWidth-12.0, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, Unix::Processors-2.046, URI-5.19, Variable::Magic-0.63, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::Writer-0.900, XML::XPath-1.48, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.74"}}, "description": "A set of common packages from CPAN", "homepage": "https://www.perl.org/"}, "Perl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Perl/5.30.0-GCCcore-8.3.0-minimal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Perl/5.30.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Algorithm::Dependency-1.111, Algorithm::Diff-1.1903, aliased-0.34, AnyData-0.12, AnyEvent-7.16, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.80, Array::Transpose-0.06, Array::Utils-0.5, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Bundle::BioPerl-2.1.9, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.07, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.14, Clone-0.43, Clone::Choose-0.010, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Simple-4.58, Config::Tiny-2.24, constant-1.33, CPANPLUS-0.9178, Crypt::DES-2.07, Crypt::Rijndael-1.14, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.224, Date::Handler-1.2, Date::Language-2.30, DateTime-1.51, DateTime::Locale-1.24, DateTime::TimeZone-2.37, DateTime::Tiny-1.07, DBD::AnyData-0.110, DBD::SQLite-1.64, DBI-1.642, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.13, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.012, Email::Date::Format-1.005, Encode-3.02, Encode::Locale-1.05, Error-0.17028, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.73, Exporter::Declare-0.114, Exporter::Tiny-1.002001, ExtUtils::CBuilder-0.280234, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.44, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.18, File::Path-2.16, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.28, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.51, Getopt::Long::Descriptive-0.104, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.300, HTML::Entities::Interpolate-1.10, HTML::Form-6.04, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.04, HTTP::Daemon-6.06, HTTP::Date-6.02, HTTP::Negotiate-6.01, HTTP::Request-6.18, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::File-1.42, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.42, IO::Socket-1.42, IO::Socket::SSL-2.066, IO::String-1.08, IO::Stringy-2.111, IO::Tty-1.12, IPC::Cmd-1.04, IPC::Run-20180523.0, IPC::Run3-0.048, JSON-4.02, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.15, List::MoreUtils-0.428, List::SomeUtils-0.56, List::Util-1.54, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.68, Log::Dispatchouli-2.019, Log::Handler-0.88, Log::Log4perl-1.49, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.07, LWP::Simple-6.39, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::VecStat-0.08, MCE::Mutex-1.866, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.030, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4229, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20200220, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.70, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.003004, Moose-2.2011, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.9, Mozilla::CA-20180117, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.19, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.88, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.108, PDF::API2-2.035, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103004, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.40, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.000008, Scalar::List::Utils-1.52, Scalar::Util-1.54, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.029, Software::License-0.103014, Specio-0.44, SQL::Abstract-1.86, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.007, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.21, Sub::Quote-2.006003, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.84, Switch-2.17, Template-2.29, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.36, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.128, Test::Differences-0.67, Test::Exception-0.43, Test::Exception::LessClever-0.009, Test::Fatal-0.014, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302171, Test::Most-0.35, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.10, Test::RequiresInternet-0.05, Test::Simple-1.302168, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.026, Text::Aligner-0.13, Text::Balanced-2.03, Text::CSV-2.00, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.133, Text::Template-1.57, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9760, Time::Local-1.30, Time::Piece-1.33, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-3.31, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.44, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.29, YAML::Tiny-1.73"}, "Perl/5.30.2-GCCcore-9.3.0-minimal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Perl/5.30.2-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Algorithm::Dependency-1.111, Algorithm::Diff-1.1903, aliased-0.34, AnyEvent-7.17, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.86, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.005, Business::ISBN::Data-20191107, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.14, Clone-0.43, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Simple-4.58, Config::Tiny-2.24, constant-1.33, CPANPLUS-0.9906, Crypt::DES-2.07, Crypt::Rijndael-1.14, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.224, Date::Handler-1.2, Date::Language-2.32, DateTime-1.52, DateTime::Locale-1.25, DateTime::TimeZone-2.38, DateTime::Tiny-1.07, DBD::CSV-0.54, DBD::SQLite-1.64, DBI-1.643, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.014, Email::Date::Format-1.005, Encode-3.04, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002001, ExtUtils::CBuilder-0.280234, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.44, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.18, File::Path-2.16, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.30, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.51, Getopt::Long::Descriptive-0.105, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.300, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.08, HTTP::Daemon-6.06, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.22, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::Compress::Bzip2-2.096, IO::File-1.42, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.42, IO::Socket-1.42, IO::Socket::SSL-2.067, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.14, IPC::Cmd-1.04, IPC::Run-20180523.0, IPC::Run3-0.048, JSON-4.02, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.16, List::MoreUtils-0.428, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.54, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.69, Log::Dispatchouli-2.019, Log::Handler-0.88, Log::Log4perl-1.49, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.07, LWP::Simple-6.43, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::VecStat-0.08, MCE::Mutex-1.866, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.031, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20200314, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.70, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.003006, Moose-2.2012, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.9, Mozilla::CA-20180117, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.19, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.88, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.112, PDF::API2-2.037, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.40, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.001004, Scalar::List::Utils-1.54, Scalar::Util-1.54, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.029, Software::License-0.103014, Specio-0.46, SQL::Abstract-1.86, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.84, Switch-2.17, Template-3.007, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.36, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.67, Test::Exception-0.43, Test::Fatal-0.014, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302172, Test::Most-0.35, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.10, Test::RequiresInternet-0.05, Test::Simple-1.302172, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.029, Text::Aligner-0.13, Text::Balanced-2.03, Text::CSV-2.00, Text::CSV_XS-1.41, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.133, Text::Template-1.58, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9760, Time::Local-1.30, Time::Piece-1.34, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, Types::Serialiser-1.0, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-3.31, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73"}, "Perl/5.32.0-GCCcore-10.2.0-minimal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Perl/5.32.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Algorithm::Dependency-1.112, Algorithm::Diff-1.1903, aliased-0.34, AnyEvent-7.17, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.86, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.005, Business::ISBN::Data-20191107, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Simple-4.58, Config::Tiny-2.24, constant-1.33, CPANPLUS-0.9908, Crypt::DES-2.07, Crypt::Rijndael-1.14, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.52, DateTime::Locale-1.26, DateTime::TimeZone-2.39, DateTime::Tiny-1.07, DBD::CSV-0.55, DBD::SQLite-1.64, DBI-1.643, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.015, Email::Date::Format-1.005, Encode-3.07, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280234, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.46, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.18, File::Path-2.17, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.105, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.302, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.08, HTTP::Daemon-6.12, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.25, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::Compress::Bzip2-2.093, IO::File-1.42, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.42, IO::Socket-1.42, IO::Socket::SSL-2.068, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.14, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, JSON-4.02, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.16, List::MoreUtils-0.428, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.55, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.021, Log::Handler-0.90, Log::Log4perl-1.50, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.09, LWP::Simple-6.47, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.874, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.031, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20200717, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.72, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.004000, Moose-2.2013, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20200520, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.19, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.88, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.114, PDF::API2-2.037, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.40, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.001004, Scalar::List::Utils-1.55, Scalar::Util-1.55, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.030, Software::License-0.103014, Specio-0.46, SQL::Abstract-1.87, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.85, Switch-2.17, Template-3.009, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.36, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.67, Test::Exception-0.43, Test::Fatal-0.016, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302177, Test::Most-0.37, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302177, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.030, Text::Aligner-0.16, Text::Balanced-2.03, Text::CSV-2.00, Text::CSV_XS-1.44, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.59, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, Types::Serialiser-1.0, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-1.76, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73"}, "Perl/5.32.1-GCCcore-10.3.0-minimal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Perl/5.32.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.333, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.86, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.006, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.26, constant-1.33, CPANPLUS-0.9910, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.54, DateTime::Locale-1.31, DateTime::TimeZone-2.47, DateTime::Tiny-1.07, DBD::CSV-0.58, DBD::SQLite-1.66, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.017, Email::Date::Format-1.005, Encode-3.08, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.62, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.14, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.60, File::ShareDir-1.118, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2311, File::Which-1.24, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.109, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9721, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap::Fibonacci-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.76, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.12, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.29, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::Compress::Bzip2-2.102, IO::HTML-1.004, IO::Socket::SSL-2.070, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, JSON-4.03, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.18, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.56, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.022, Log::Handler-0.90, Log::Log4perl-1.54, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.53, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.874, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Lite-3.031, MIME::Types-2.20, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20210420, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.005004, Moose-2.2015, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20200520, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.13, Net::HTTP-6.21, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.90, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.39, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.118, PDF::API2-2.040, Perl::OSType-1.010, PerlIO::utf8_strict-0.008, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.42, Pod::Weaver-4.017, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.002004, Scalar::Util-1.56, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.031, Software::License-0.103014, Specio-0.47, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.85, Switch-2.17, Template-3.009, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.37, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.67, Test::Exception-0.43, Test::Fatal-0.016, Test::Harness-3.42, Test::LeakTrace-0.17, Test::More-1.302183, Test::Most-0.37, Test::NoWarnings-1.04, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302183, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.030, Text::Aligner-0.16, Text::Balanced-2.04, Text::CSV-2.00, Text::CSV_XS-1.46, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.59, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.30, Types::Serialiser-1.01, UNIVERSAL::moniker-0.08, URI-5.09, URI::Escape-5.09, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73"}, "Perl/5.34.0-GCCcore-11.2.0-minimal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Perl/5.34.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.334, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.006, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.027, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.26, constant-1.33, CPANPLUS-0.9910, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper-2.183, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.112, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.54, DateTime::Locale-1.32, DateTime::TimeZone-2.47, DateTime::Tiny-1.07, DBD::CSV-0.58, DBD::SQLite-1.70, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.024, Email::Date::Format-1.005, Encode-3.11, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.23, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.62, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.14, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.60, File::ShareDir-1.118, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.109, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9722, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap::Fibonacci-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.76, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.12, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.33, HTTP::Tiny-0.078, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::HTML-1.004, IO::Socket::SSL-2.071, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, JSON-4.03, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.56, List::UtilsBy-0.11, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.023, Log::Handler-0.90, Log::Log4perl-1.54, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.33, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.55, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.874, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-1.012.2, MIME::Lite-3.033, MIME::Types-2.21, Mixin::Linewise::Readers-0.110, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20210723, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.005004, Moose-2.2015, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.201, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20200520, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.13, Net::HTTP-6.21, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.90, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.39, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.118, PDF::API2-2.041, Perl::OSType-1.010, PerlIO::utf8_strict-0.008, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094002, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Parser-1.65, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.43, Pod::Weaver-4.018, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.002004, Scalar::Util-1.56, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.032, Software::License-0.104001, Specio-0.47, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::Print-0.94, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.988, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.86, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Unknown-0.79, Template-3.009, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.42, Term::UI-0.48, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.68, Test::Exception-0.43, Test::Fatal-0.016, Test::Harness-3.42, Test::LeakTrace-0.17, Test::More-1.302186, Test::Most-0.37, Test::NoWarnings-1.06, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302186, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.031, Text::Aligner-0.16, Text::Balanced-2.04, Text::CSV-2.01, Text::CSV_XS-1.46, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.59, Thread::Queue-3.13, Throwable-1.000, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.30, Types::Serialiser-1.01, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, URI-5.09, URI::Escape-5.09, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73"}, "Perl/5.34.1-GCCcore-11.3.0-minimal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Perl/5.34.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.334, App::cpanminus-1.7046, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.26, B::Lint-1.20, boolean-0.46, Business::ISBN-3.007, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Tiny-1.008, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.65, Config::INI-0.027, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.28, constant-1.33, CPAN::Meta::Check-0.014, CPANPLUS-0.9914, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper-2.183, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.112, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.58, DateTime::Locale-1.35, DateTime::TimeZone-2.52, DateTime::Tiny-1.07, DBD::CSV-0.59, DBD::SQLite-1.70, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::Cycle-1.12, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::Size-0.83, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.024, Email::Date::Format-1.005, Encode-3.17, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.26, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.64, ExtUtils::ParseXS-3.44, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.16, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.15, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.60, File::ShareDir-1.118, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.013, File::Spec-3.75, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.110, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9725, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.78, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.14, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.36, HTTP::Tiny-0.080, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Importer-0.026, Inline-0.86, IO::Compress::Bzip2-2.106, IO::HTML-1.004, IO::Socket::SSL-2.074, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, IPC::System::Simple-1.30, JSON-4.05, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.62, List::UtilsBy-0.11, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.023, Log::Handler-0.90, Log::Log4perl-1.54, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.33, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.55, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.878, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-1.012.2, MIME::Lite-3.033, MIME::Types-2.22, Mixin::Linewise::Readers-0.110, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20220420, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Path-0.19, Module::Pluggable-5.2, Module::Runtime-0.016, Module::Runtime::Conflicts-0.003, Moo-2.005004, Moose-2.2201, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.201, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20211001, MRO::Compat-0.15, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.13, Net::HTTP-6.22, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.92, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.40, Package::Stash::XS-0.29, PadWalker-2.5, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.122, PDF::API2-2.043, Perl::OSType-1.010, PerlIO::utf8_strict-0.009, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094002, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.43, Pod::Weaver-4.018, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.002004, Scalar::Util-1.56, Scalar::Util::Numeric-0.40, Scope::Guard-0.21, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.032, Software::License-0.104001, Specio-0.47, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.25, strictures-2.000006, String::Flogger-1.101245, String::Print-0.94, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.988, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Info-0.002, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.86, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Unknown-0.79, Template-3.100, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.42, Term::Table-0.016, Term::UI-0.50, Test-1.26, Test2::Plugin::NoWarnings-0.09, Test2::Require::Module-0.000145, Test::ClassAPI-1.07, Test::CleanNamespaces-0.24, Test::Deep-1.130, Test::Differences-0.69, Test::Exception-0.43, Test::Fatal-0.016, Test::File::ShareDir::Dist-1.001002, Test::Harness-3.44, Test::LeakTrace-0.17, Test::Memory::Cycle-1.06, Test::More-1.302190, Test::More::UTF8-0.05, Test::Most-0.37, Test::Needs-0.002009, Test::NoWarnings-1.06, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302190, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.031, Test::Without::Module-0.20, Text::Aligner-0.16, Text::Balanced-2.04, Text::CSV-2.01, Text::CSV_XS-1.47, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.31, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.60, Thread::Queue-3.13, Throwable-1.000, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.31, Types::Serialiser-1.01, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, URI-5.10, URI::Escape-5.10, Variable::Magic-0.62, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73"}, "Perl/5.36.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.334, App::cpanminus-1.7046, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.26, B::Lint-1.20, boolean-0.46, Business::ISBN-3.007, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Tiny-1.008, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.65, Config::INI-0.027, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.28, constant-1.33, CPAN::Meta::Check-0.014, CPANPLUS-0.9914, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper-2.183, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.112, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.58, DateTime::Locale-1.36, DateTime::TimeZone-2.53, DateTime::Tiny-1.07, DBD::CSV-0.59, DBD::SQLite-1.70, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.16, Devel::Cycle-1.12, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::Size-0.83, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.025, Email::Date::Format-1.005, Encode-3.19, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.004000, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.26, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.64, ExtUtils::ParseXS-3.44, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.16, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.15, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.61, File::ShareDir-1.118, File::ShareDir::Install-0.14, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.013, File::Spec-3.75, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.110, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9725, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.10, HTML::Parser-3.78, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.14, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.37, HTTP::Tiny-0.082, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Importer-0.026, Inline-0.86, IO::Compress::Bzip2-2.201, IO::HTML-1.004, IO::Socket::SSL-2.075, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20220807.0, IPC::Run3-0.048, IPC::System::Simple-1.30, JSON-4.09, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.63, List::UtilsBy-0.12, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.023, Log::Handler-0.90, Log::Log4perl-1.56, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.33, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.67, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.879, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-1.013.1, MIME::Lite-3.033, MIME::Types-2.22, Mixin::Linewise::Readers-0.110, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20220820, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Path-0.19, Module::Pluggable-5.2, Module::Runtime-0.016, Module::Runtime::Conflicts-0.003, Moo-2.005004, Moose-2.2201, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.006, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.201, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20211001, MRO::Compat-0.15, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.14, Net::HTTP-6.22, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.92, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.40, Package::Stash::XS-0.30, PadWalker-2.5, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.124, PDF::API2-2.043, Perl::OSType-1.010, PerlIO::utf8_strict-0.009, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094002, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.43, Pod::Weaver-4.018, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.008, Role::Tiny-2.002004, Scalar::Util-1.63, Scalar::Util::Numeric-0.40, Scope::Guard-0.21, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.036, Software::License-0.104002, Specio-0.48, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.25, strictures-2.000006, String::Flogger-1.101245, String::Print-0.94, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.988, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Info-0.002, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.87, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Unknown-0.79, Template-3.101, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.42, Term::Table-0.016, Term::UI-0.50, Test-1.26, Test2::Plugin::NoWarnings-0.09, Test2::Require::Module-0.000145, Test::ClassAPI-1.07, Test::CleanNamespaces-0.24, Test::Deep-1.130, Test::Differences-0.69, Test::Exception-0.43, Test::Fatal-0.016, Test::File::ShareDir::Dist-1.001002, Test::Harness-3.44, Test::LeakTrace-0.17, Test::Memory::Cycle-1.06, Test::More-1.302191, Test::More::UTF8-0.05, Test::Most-0.37, Test::Needs-0.002009, Test::NoWarnings-1.06, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302191, Test::Version-2.09, Test::Warn-0.37, Test::Warnings-0.031, Test::Without::Module-0.20, Text::Aligner-0.16, Text::Balanced-2.06, Text::CSV-2.02, Text::CSV_XS-1.48, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.31, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.61, Thread::Queue-3.13, Throwable-1.000, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.31, Types::Serialiser-1.01, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, URI-5.12, URI::Escape-5.12, Variable::Magic-0.62, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.48, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73"}, "Perl/5.36.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Carp-1.50, constant-1.33, Data::Dumper-2.183, Exporter-5.77, File::Path-2.18, File::Spec-3.75, Getopt::Long-2.54, IO::File-1.51, Text::ParseWords-3.31, Thread::Queue-3.13, threads-2.21"}, "Perl/5.38.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Carp-1.50, constant-1.33, Data::Dumper-2.183, Exporter-5.77, File::Path-2.18, File::Spec-3.75, Getopt::Long-2.54, IO::File-1.51, Text::ParseWords-3.31, Thread::Queue-3.13, threads-2.21"}, "Perl/5.28.1-GCCcore-8.2.0": {"clusters": ["doduo"], "extensions": "Algorithm::Dependency-1.111, Algorithm::Diff-1.1903, aliased-0.34, AnyData-0.12, AnyEvent-7.15, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.80, Array::Transpose-0.06, Array::Utils-0.5, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Bundle::BioPerl-2.1.9, Canary::Stability-2012, Capture::Tiny-0.48, Carp-1.50, Carp-1.50, Carp::Clan-6.07, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.32, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.14, Clone-0.41, Clone::Choose-0.010, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Tiny-2.23, constant-1.33, CPANPLUS-0.9176, Crypt::DES-2.07, Crypt::Rijndael-1.13, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.224, Date::Handler-1.2, Date::Language-2.30, DateTime-1.50, DateTime::Locale-1.23, DateTime::TimeZone-2.23, DateTime::Tiny-1.07, DBD::AnyData-0.110, DBD::SQLite-1.62, DBI-1.642, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.13, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.03, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.012, Email::Date::Format-1.005, Encode-3.01, Encode::Locale-1.05, Error-0.17027, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.73, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002001, ExtUtils::CBuilder-0.280231, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.19, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.36, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.44, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.16, File::Path-2.16, File::Path-2.16, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.26, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Spec-3.75, File::Temp-0.2309, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.50, Getopt::Long::Descriptive-0.103, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.300, HTML::Entities::Interpolate-1.10, HTML::Form-6.03, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.04, HTTP::Daemon-6.01, HTTP::Date-6.02, HTTP::Negotiate-6.01, HTTP::Request-6.18, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, IO::File-1.39, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.39, IO::Socket-1.39, IO::Socket::SSL-2.066, IO::String-1.08, IO::Stringy-2.111, IO::Tty-1.12, IPC::Cmd-1.02, IPC::Run-20180523.0, IPC::Run3-0.048, JSON-4.02, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.15, List::MoreUtils-0.428, List::SomeUtils-0.56, List::Util-1.54, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.68, Log::Dispatchouli-2.016, Log::Handler-0.88, Log::Log4perl-1.49, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.02, LWP::Simple-6.37, Mail::Util-2.20, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::VecStat-0.08, MCE::Mutex-1.866, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.030, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4224, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20190524, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.68, Module::Metadata-1.000036, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.003004, Moose-2.2011, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.10, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.6, MRO::Compat-0.13, namespace::autoclean-0.28, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.18, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.85, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.237, Parse::RecDescent-1.967015, Path::Tiny-0.108, PDF::API2-2.033, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103004, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.12, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.38, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.000006, Scalar::List::Utils-1.50, Scalar::Util-1.50, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.029, Software::License-0.103014, Specio-0.43, SQL::Abstract-1.86, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.007, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.21, Sub::Quote-2.006003, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.84, Switch-2.17, Template-2.28, Template::Plugin::Number::Format-1.06, Term::Encoding-0.02, Term::ReadKey-2.38, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.128, Test::Differences-0.67, Test::Exception-0.43, Test::Exception::LessClever-0.009, Test::Fatal-0.014, Test::Harness-3.42, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302162, Test::Most-0.35, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.10, Test::Simple-1.302162, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.026, Text::Aligner-0.13, Text::Balanced-2.03, Text::CSV-1.99, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.133, Text::Template-1.55, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::Local-1.28, Time::Piece-1.33, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-3.31, version-0.9924, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.44_01, XML::RegExp-0.04, XML::SAX-1.00, XML::SAX::Base-1.09, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.29, YAML::Tiny-1.73"}}, "description": "Larry Wall's Practical Extraction and Report Language", "homepage": "https://www.perl.org/"}, "PETSc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PETSc/3.12.4-foss-2019b-Python-3.7.4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PETSc/3.17.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PETSc/3.18.4-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PETSc/3.12.4-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PETSc/3.12.4-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PETSc/3.14.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "PETSc/3.15.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PETSc/3.12.4-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik"]}}, "description": "PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.", "homepage": "https://www.mcs.anl.gov/petsc"}, "petsc4py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"petsc4py/3.17.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "petsc4py/3.12.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "petsc4py/3.15.0-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation.", "homepage": "https://bitbucket.org/petsc/petsc4py"}, "Phenoflow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Phenoflow/1.1.2-20200917-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "R package offering functionality for the advanced analysis of microbial flow cytometry data", "homepage": "https://github.com/rprops/Phenoflow_package"}, "phonopy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"phonopy/2.7.1-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Phonopy is an open source package of phonon calculations based on the supercell approach.", "homepage": "https://atztogo.github.io/phonopy/"}, "PHYLIP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PHYLIP/3.697-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PHYLIP is a free package of programs for inferring phylogenies.", "homepage": "https://evolution.genetics.washington.edu/phylip"}, "PhyloPhlAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PhyloPhlAn/3.0.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling ofgenomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use methodfor large-scale microbial genome characterization and phylogenetic analysisat multiple levels of resolution.", "homepage": "https://github.com/biobakery/phylophlan"}, "phyluce": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"phyluce/1.7.3-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "phyluce-1.7.3"}}, "description": "phyluce is a software package for working with data generated from sequence capture of UCE (ultra-conserved element) loci, as first published in [BCF2012]. Specifically, phyluce is a suite of programs to:1) assemble raw sequence reads from Illumina platforms into contigs2) determine which contigs represent UCE loci3) filter potentially paralagous UCE loci4) generate different sets of UCE loci across taxa of interest", "homepage": "https://github.com/faircloth-lab/phyluce"}, "picard": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"picard/2.25.1-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "picard/2.21.6-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "picard/2.25.0-Java-11": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "picard/2.21.1-Java-11": {"clusters": ["donphan", "joltik", "skitty"]}, "picard/2.18.27-Java-1.8": {"clusters": ["skitty"]}}, "description": "A set of tools (in Java) for working with next generation sequencing data in the BAM format.", "homepage": "http://sourceforge.net/projects/picard"}, "PICRUSt2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PICRUSt2/2.5.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "joblib-1.3.1, PICRUSt2-2.5.2"}}, "description": "PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a software for predicting functional abundances based only on marker gene sequences.", "homepage": "https://github.com/picrust/picrust2"}, "pigz": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pigz/2.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pigz/2.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pigz/2.8-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pigz/2.4-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "pigz/2.6-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.", "homepage": "https://zlib.net/pigz/"}, "Pillow-SIMD": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pillow-SIMD/7.1.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow-SIMD/8.2.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Pillow-SIMD/9.2.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow-SIMD/9.5.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow-SIMD/9.5.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow-SIMD/6.0.x.post0-GCCcore-8.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.", "homepage": "https://github.com/uploadcare/pillow-simd"}, "Pillow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pillow/8.0.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/8.2.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/8.3.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Pillow/8.3.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/9.1.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/9.4.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/10.0.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/10.2.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pillow/6.2.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Pillow/7.0.0-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.", "homepage": "https://pillow.readthedocs.org/"}, "Pilon": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pilon/1.23-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pilon/1.23-Java-1.8": {"clusters": ["skitty"]}}, "description": "Pilon is an automated genome assembly improvement and variant detection tool", "homepage": "https://github.com/broadinstitute/pilon"}, "Pint": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pint/0.22-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Pint is a Python package to define, operate andmanipulate physical quantities: the product of a numerical value and aunit of measurement. It allows arithmetic operations between them andconversions from and to different units.", "homepage": "https://github.com/hgrecco/pint"}, "pixman": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pixman/0.38.4-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pixman/0.38.4-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.40.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.40.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.40.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.40.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.42.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.42.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pixman/0.38.0-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.", "homepage": "http://www.pixman.org/"}, "pkg-config": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pkg-config/0.29.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkg-config/0.29.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pkg-config/0.29.2-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).", "homepage": "http://www.freedesktop.org/wiki/Software/pkg-config/"}, "pkgconf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pkgconf/1.8.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconf/1.8.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconf/1.8.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconf/1.9.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconf/1.9.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconf/2.0.3-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.", "homepage": "https://github.com/pkgconf/pkgconf"}, "pkgconfig": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pkgconfig/1.5.1-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.1-GCCcore-10.2.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.4-GCCcore-10.3.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.5-GCCcore-11.2.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.5-GCCcore-11.3.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.5-GCCcore-12.2.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.5-GCCcore-12.3.0-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pkgconfig/1.5.1-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "pkgconfig-1.5.1, poetry-0.12.17"}}, "description": "pkgconfig is a Python module to interface with the pkg-config command line tool", "homepage": "https://github.com/matze/pkgconfig"}, "PLAMS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PLAMS/1.5.1-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Python Library for Automating Molecular Simulation (PLAMS) is powerful and flexible Python toolinterfaced to the Amsterdam Modeling Suite engines ADF, BAND, DFTB, MOPAC, ReaxFF, and UFF.", "homepage": "https://www.scm.com/product/plams"}, "PLINK": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"PLINK/2.00a3.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Whole-genome association analysis toolset", "homepage": "https://www.cog-genomics.org/plink/2.0/"}, "plot1cell": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"plot1cell/0.0.1-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "plot1cell/0.0.1-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "plot1cell: a package for advanced single cell data visualization", "homepage": "https://github.com/HaojiaWu/plot1cell"}, "plotly.py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"plotly.py/5.1.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "plotly-5.1.0, tenacity-8.0.1"}, "plotly.py/5.4.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "plotly-5.4.0, tenacity-8.0.1"}, "plotly.py/5.10.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "plotly-5.10.0, tenacity-8.1.0"}, "plotly.py/5.12.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "plotly-5.12.0, tenacity-8.0.1"}, "plotly.py/5.13.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "plotly-5.13.1, tenacity-8.2.2"}, "plotly.py/5.16.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "packaging-23.1, plotly-5.16.0, tenacity-8.2.3"}, "plotly.py/4.4.1-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "plotly-4.4.1, retrying-1.3.3"}, "plotly.py/4.8.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "plotly-4.8.1, retrying-1.3.3"}, "plotly.py/4.14.3-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "plotly-4.14.3, retrying-1.3.3"}}, "description": "An open-source, interactive graphing library for Python", "homepage": "https://plot.ly/python"}, "PLUMED": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PLUMED/2.7.2-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PLUMED/2.7.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PLUMED/2.8.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PLUMED/2.9.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PLUMED/2.9.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PLUMED/2.5.3-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PLUMED/2.5.3-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PLUMED/2.6.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PLUMED/2.6.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PLUMED/2.6.0-iomkl-2020a-Python-3.8.2": {"clusters": ["doduo"]}, "PLUMED/2.6.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "PLUMED/2.6.2-intel-2020b": {"clusters": ["doduo", "donphan", "joltik"]}, "PLUMED/2.6.2-intelcuda-2020b": {"clusters": ["joltik"]}}, "description": "PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.", "homepage": "https://www.plumed.org"}, "PMIx": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PMIx/3.1.4-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/3.1.5-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/3.1.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/3.2.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/4.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/4.1.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/4.2.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/4.2.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PMIx/4.2.6-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Process Management for Exascale EnvironmentsPMI Exascale (PMIx) represents an attempt toprovide an extended version of the PMI standard specifically designedto support clusters up to and including exascale sizes. The overallobjective of the project is not to branch the existing pseudo-standarddefinitions - in fact, PMIx fully supports both of the existing PMI-1and PMI-2 APIs - but rather to (a) augment and extend those APIs toeliminate some current restrictions that impact scalability, and (b)provide a reference implementation of the PMI-server that demonstratesthe desired level of scalability.", "homepage": "https://pmix.org/"}, "PnetCDF": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"PnetCDF/1.12.3-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PnetCDF/1.12.3-gompi-2022a": {"clusters": ["accelgor", "donphan", "joltik"]}}, "description": "Parallel netCDF: A Parallel I/O Library for NetCDF File Access", "homepage": "https://parallel-netcdf.github.io/"}, "pocl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pocl/1.4-gcccuda-2019b": {"clusters": ["accelgor", "joltik"]}, "pocl/1.8-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pocl/1.8-GCC-11.3.0-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"]}, "pocl/1.8-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pocl/3.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pocl/4.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pocl/1.6-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "pocl/1.6-gcccuda-2020b": {"clusters": ["joltik"]}}, "description": "Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard", "homepage": "https://portablecl.org"}, "pod5-file-format": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pod5-file-format/0.1.8-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "attrs-22.2.0, iso8601-1.1.0, pod5-0.1.8, vbz_h5py_plugin-1.0.1"}}, "description": "POD5 is a file format for storing nanopore dna data in an easily accessible way. The format is able to be written in a streaming manner which allows a sequencing instrument to directly write the format.", "homepage": "https://github.com/nanoporetech/pod5-file-format"}, "poetry": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"poetry/1.0.9-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CacheControl-0.12.6, cachy-0.3.0, cleo-0.7.6, clikit-0.4.3, crashtest-0.3.0, html5lib-1.1, intreehooks-1.0, jeepney-0.4.3, jsonschema-3.2.0, keyring-20.0.1, keyrings.alt-3.4.0, lockfile-0.12.2, msgpack-1.0.0, pastel-0.2.0, pexpect-4.8.0, pkginfo-1.5.0.1, poetry-1.0.9, ptyprocess-0.6.0, pylev-1.3.0, pyrsistent-0.14.11, pytoml-0.1.21, requests-toolbelt-0.8.0, SecretStorage-3.1.2, shellingham-1.3.2, tomlkit-0.5.11, webencodings-0.5.1"}, "poetry/1.5.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "attrs-23.1.0, build-0.10.0, CacheControl-0.12.14, certifi-2023.5.7, charset-normalizer-3.1.0, cleo-2.0.1, crashtest-0.4.1, dulwich-0.21.5, html5lib-1.1, idna-3.4, importlib_metadata-6.7.0, installer-0.7.0, jaraco.classes-3.2.3, jeepney-0.8.0, jsonschema-4.17.3, keyring-23.13.1, lockfile-0.12.2, more-itertools-9.1.0, msgpack-1.0.5, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.8.0, poetry-1.5.1, poetry_core-1.6.1, poetry_plugin_export-1.4.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.19.3, rapidfuzz-2.15.1, requests-2.31.0, requests-toolbelt-1.0.0, SecretStorage-3.3.3, shellingham-1.5.0, six-1.16.0, tomlkit-0.11.8, urllib3-1.26.16, webencodings-0.5.1, zipp-3.15.0"}, "poetry/1.6.1-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "attrs-23.1.0, build-0.10.0, cachecontrol-0.13.1, certifi-2023.7.22, charset-normalizer-3.3.1, cleo-2.0.1, crashtest-0.4.1, dulwich-0.21.6, html5lib-1.1, idna-3.4, importlib_metadata-6.8.0, installer-0.7.0, jaraco.classes-3.3.0, jeepney-0.8.0, jsonschema-4.17.3, keyring-24.2.0, lockfile-0.12.2, more-itertools-10.1.0, msgpack-1.0.7, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.11.0, poetry-1.6.1, poetry_core-1.7.0, poetry_plugin_export-1.5.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.20.0, rapidfuzz-2.15.2, requests-2.31.0, requests-toolbelt-1.0.0, SecretStorage-3.3.3, shellingham-1.5.4, six-1.16.0, tomlkit-0.12.1, urllib3-2.0.7, webencodings-0.5.1, zipp-3.17.0"}, "poetry/1.7.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "attrs-23.2.0, build-1.0.3, CacheControl-0.13.1, certifi-2023.11.17, charset-normalizer-3.3.2, cleo-2.1.0, crashtest-0.4.1, dulwich-0.21.7, fastjsonschema-2.19.1, html5lib-1.1, idna-3.6, importlib_metadata-7.0.1, installer-0.7.0, jaraco.classes-3.3.0, jeepney-0.8.0, jsonschema-4.21.0, jsonschema_specifications-2023.12.1, keyring-24.3.0, lockfile-0.12.2, more-itertools-10.2.0, msgpack-1.0.7, pexpect-4.9.0, pkginfo-1.9.6, platformdirs-3.11.0, poetry-1.7.1, poetry_core-1.8.1, poetry_plugin_export-1.6.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.20.0, rapidfuzz-3.6.1, referencing-0.32.1, requests-2.31.0, requests-toolbelt-1.0.0, rpds_py-0.17.1, SecretStorage-3.3.3, shellingham-1.5.4, six-1.16.0, tomlkit-0.12.3, urllib3-2.1.0, webencodings-0.5.1, zipp-3.17.0"}}, "description": "Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.", "homepage": "https://python-poetry.org"}, "polars": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"polars/0.15.6-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "connectorx-0.3.1, deltalake-0.6.4, maturin-0.14.6, polars-0.15.6, setuptools-65.6.3, setuptools-rust-1.5.2, xlsx2csv-0.8.0"}}, "description": "Lightning-fast DataFrame library for Rust and Python.", "homepage": "https://pola.rs/"}, "poppler": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"poppler/22.01.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "poppler/23.09.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "poppler/21.06.1-GCC-10.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Poppler is a PDF rendering library", "homepage": "https://poppler.freedesktop.org"}, "popscle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"popscle/0.1-beta-20210505-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "popscle/0.1-beta-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A suite ofpopulation scale analysis tools for single-cell genomics data includingimplementation of Demuxlet / Freemuxlet methods and auxilary tools", "homepage": "https://github.com/statgen/popscle"}, "PostgreSQL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PostgreSQL/13.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PostgreSQL/14.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PostgreSQL/16.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.", "homepage": "https://www.postgresql.org/"}, "POT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"POT/0.9.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "autograd-1.6.2, POT-0.9.0, pymanopt-2.1.1, versioneer-0.28"}}, "description": "POT (Python Optimal Transport) is a Python library provide several solvers for optimization problems related to Optimal Transport for signal, image processing and machine learning.", "homepage": "https://github.com/rflamary/POT"}, "powerlaw": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"powerlaw/1.5-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions", "homepage": "http://www.github.com/jeffalstott/powerlaw"}, "PPanGGOLiN": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"PPanGGOLiN/1.1.136-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "colorlover-0.3.0, PPanGGOLiN-1.1.136"}}, "description": "PPanGGOLiN is a software suite used to create and manipulate prokaryoticpangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designedto scale up to tens of thousands of genomes. It has the specificity to partition the pangenome usinga statistical approach rather than using fixed thresholds which gives it the ability to work with low-qualitydata such as Metagenomic Assembled Genomes (MAGs) or Single-cell Amplified Genomes (SAGs) thus taking advantageof large scale environmental studies and letting users study the pangenome of uncultivable species.", "homepage": "https://github.com/labgem/PPanGGOLiN"}, "pplacer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pplacer/1.1.alpha19": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis.", "homepage": "http://matsen.fhcrc.org/pplacer/"}, "preseq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"preseq/3.2.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Software for predicting library complexity and genome coverage in high-throughput sequencing.", "homepage": "https://smithlabresearch.org/software/preseq"}, "presto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"presto/1.0.0-20200718-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "presto/1.0.0-20230113-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "presto/1.0.0-20230501-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Presto performs a fast Wilcoxon rank sum test and auROC analysis.", "homepage": "https://github.com/immunogenomics/presto"}, "pretty-yaml": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"pretty-yaml/21.10.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "PyYAML-based python module to produce pretty and readable YAML-serialized data.This module is for serialization only, see ruamel.yaml module for literate YAMLparsing (keeping track of comments, spacing, line/column numbers of values, etc).", "homepage": "https://github.com/mk-fg/pretty-yaml"}, "PRINSEQ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PRINSEQ/0.20.4-foss-2021b-Perl-5.34.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "Cairo-1.109, Contextual::Return-0.2.1, ExtUtils::Depends-0.8001, ExtUtils::PkgConfig-1.16, Math::Cephes::Matrix-0.5305, Math::MatrixReal-2.13, MIME::Base64-3.15, Pod::Usage-2.0, Statistics::PCA-0.0.1, Text::SimpleTable-2.07"}, "PRINSEQ/0.20.4-foss-2020b-Perl-5.32.0": {"clusters": ["doduo", "donphan", "gallade", "joltik"], "extensions": "Cairo-1.109, Contextual::Return-0.2.1, ExtUtils::Depends-0.8001, ExtUtils::PkgConfig-1.16, Math::Cephes::Matrix-0.5305, Math::MatrixReal-2.13, MIME::Base64-3.15, Pod::Usage-2.0, Statistics::PCA-0.0.1, Text::SimpleTable-2.07"}}, "description": "A bioinformatics tool to PRe-process and show INformation of SEQuence data.", "homepage": "http://prinseq.sourceforge.net"}, "ProBiS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ProBiS/20230403-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "ProBiS algorithm aligns and superimposes complete protein surfaces,surface motifs, or protein binding sites.", "homepage": "http://insilab.org/probis-algorithm"}, "prodigal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"prodigal/2.6.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "prodigal/2.6.3-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee.", "homepage": "https://github.com/hyattpd/Prodigal/"}, "PROJ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PROJ/8.0.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PROJ/8.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PROJ/9.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PROJ/9.1.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PROJ/9.2.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PROJ/6.2.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PROJ/7.0.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PROJ/7.2.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Program proj is a standard Unix filter function which convertsgeographic longitude and latitude coordinates into cartesian coordinates", "homepage": "https://proj.org"}, "ProtHint": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ProtHint/2.6.0-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ProtHint/2.6.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ProtHint/2.6.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ProtHint/2.4.0-iccifort-2019.5.281-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "ProtHint is a pipeline for predicting and scoring hints (in the form of introns, start and stop codons) in the genome of interest by mapping and spliced aligning predicted genes to a database of reference protein sequences.", "homepage": "https://github.com/gatech-genemark/ProtHint"}, "protobuf-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"protobuf-python/3.14.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf-python/3.17.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf-python/3.17.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf-python/3.19.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf-python/4.23.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf-python/4.24.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf-python/3.10.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "protobuf-python/3.13.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Python Protocol Buffers runtime library.", "homepage": "https://github.com/google/protobuf/"}, "protobuf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"protobuf/3.14.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf/3.17.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf/3.17.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf/3.19.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf/23.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf/24.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "protobuf/2.5.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "protobuf/2.5.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "protobuf/3.10.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "protobuf/3.13.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Google Protocol Buffers", "homepage": "https://github.com/google/protobuf/"}, "PsiCLASS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PsiCLASS/1.0.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PsiCLASS is a reference-based transcriptome assembler for single or multiple RNA-seq samples.", "homepage": "https://github.com/splicebox/PsiCLASS"}, "psutil": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"psutil/5.9.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "psutil-5.9.5"}}, "description": "A cross-platform process and system utilities module for Python", "homepage": "https://github.com/giampaolo/psutil"}, "psycopg2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"psycopg2/2.9.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "psycopg2/2.9.6-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Psycopg is the most popular PostgreSQL adapter for the Python programming language.", "homepage": "https://psycopg.org/"}, "pugixml": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pugixml/1.12.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pugixml is a light-weight C++ XML processing library", "homepage": "https://pugixml.org/"}, "pullseq": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pullseq/1.0.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Utility program for extracting sequences from a fasta/fastq file", "homepage": "https://github.com/bcthomas/pullseq"}, "PuLP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PuLP/2.7.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PuLP/2.8.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PuLP is an LP modeler written in Python. PuLP can generate MPS or LP files andcall GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP tosolve linear problems.", "homepage": "https://github.com/coin-or/pulp"}, "purge_dups": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"purge_dups/1.2.5-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "runner-20191220"}}, "description": "purge haplotigs and overlaps in an assembly based on read depth", "homepage": "https://github.com/dfguan/purge_dups"}, "pv": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pv/1.7.24-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Pipe Viewer - monitor the progress of data through a pipe", "homepage": "https://www.ivarch.com/programs/pv.shtml"}, "py-cpuinfo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"py-cpuinfo/9.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "py-cpuinfo/9.0.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "py-cpuinfo gets CPU info with pure Python.", "homepage": "https://github.com/workhorsy/py-cpuinfo"}, "py3Dmol": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"py3Dmol/2.0.1.post1-GCCcore-11.3.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "py3Dmol-2.0.1.post1"}}, "description": "A simple IPython/Jupyter widget to embed an interactive 3Dmol.js viewer in a notebook.", "homepage": "https://github.com/3dmol/3Dmol.js/tree/master/py3Dmol"}, "pybedtools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pybedtools/0.8.2-GCC-11.2.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybedtools/0.8.2-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pybedtools/0.9.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pybedtools-0.9.0"}, "pybedtools/0.9.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pybedtools-0.9.0"}, "pybedtools/0.8.1-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "pybedtools/0.8.2-GCC-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybedtools/0.8.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python.", "homepage": "https://daler.github.io/pybedtools"}, "PyBerny": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyBerny/0.6.3-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pyberny-0.6.3"}, "PyBerny/0.6.2-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PyBerny/0.6.3-foss-2022a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pyberny-0.6.3"}}, "description": "PyBerny is an optimizer of molecular geometries with respect to the total energy,using nuclear gradient information.", "homepage": "https://github.com/jhrmnn/pyberny"}, "pyBigWig": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pyBigWig/0.3.18-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pyBigWig/0.3.18-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pyBigWig/0.3.18-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "pyBigWig/0.3.17-GCCcore-9.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "A python extension, written in C, for quick access to bigBed files and access to and creation of bigWig files.", "homepage": "https://github.com/deeptools/pyBigWig"}, "pybind11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pybind11/2.4.3-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybind11/2.6.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybind11/2.6.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybind11/2.7.1-GCCcore-11.2.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybind11/2.7.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybind11/2.9.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybind11/2.10.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybind11/2.11.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybind11/2.11.1-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pybind11/2.4.3-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.", "homepage": "https://pybind11.readthedocs.io"}, "PyCairo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyCairo/1.20.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyCairo/1.20.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyCairo/1.21.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyCairo/1.18.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PyCairo/1.20.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python bindings for the cairo library", "homepage": "https://pycairo.readthedocs.io/"}, "PyCalib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyCalib/0.1.0.dev0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyCalib/20230531-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python library for classifier calibration", "homepage": "https://github.com/classifier-calibration/PyCalib"}, "PyCheMPS2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyCheMPS2/1.8.12-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "PyCheMPS2-1.8.12"}, "PyCheMPS2/1.8.12-foss-2022a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "PyCheMPS2-1.8.12"}}, "description": "PyCheMPS2 is a python interface to CheMPS2, for compilation withoutMPI. CheMPS2 is a scientific library which contains a spin-adaptedimplementation of the density matrix renormalization group (DMRG)for ab initio quantum chemistry.", "homepage": "https://sebwouters.github.io/CheMPS2"}, "pycocotools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"pycocotools/2.0.4-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pycocotools/2.0.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "pycocotools/2.0.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Official APIs for the MS-COCO dataset", "homepage": "https://pypi.org/project/pycocotools"}, "pycodestyle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pycodestyle/2.11.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pycodestyle is a tool to check your Python code against some of the style conventions in PEP 8.", "homepage": "https://pycodestyle.readthedocs.io"}, "PycURL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PycURL/7.45.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features.", "homepage": "http://pycurl.io/"}, "pydantic": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pydantic/1.10.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pydantic-1.10.4, typing_extensions-4.4.0"}, "pydantic/1.10.13-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pydantic-1.10.13"}, "pydantic/2.5.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "annotated_types-0.6.0, pydantic-2.5.3, pydantic_core-2.14.6"}, "pydantic/2.5.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "annotated_types-0.6.0, pydantic-2.5.3, pydantic_core-2.14.6"}}, "description": "Data validation and settings management using Python type hinting.", "homepage": "https://github.com/samuelcolvin/pydantic"}, "pydicom": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pydicom/2.1.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pydicom/2.2.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pydicom/2.3.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pydicom/1.4.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Pure python package for DICOM medical file reading and writing.", "homepage": "https://github.com/pydicom/pydicom"}, "pydot": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pydot/1.4.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pydot/1.4.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pydot/1.4.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pydot/1.4.2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python interface to Graphviz's Dot language.", "homepage": "https://github.com/pydot/pydot"}, "pyEGA3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pyEGA3/4.0.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "htsget-0.2.5, humanize-4.0.0, pyEGA3-4.0.0, urllib3-1.26.9"}, "pyEGA3/5.0.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "htsget-0.2.6, humanize-4.8.0, pyEGA3-5.0.2, urllib3-1.26.18"}}, "description": "A basic Python-based EGA download client", "homepage": "https://github.com/EGA-archive/ega-download-client"}, "pyfaidx": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pyfaidx/0.6.3.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pyfaidx/0.7.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pyfaidx/0.7.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pyfaidx/0.7.2.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pyfaidx/0.5.9.5-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "pyfaidx/0.5.9.5-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pyfaidx: efficient pythonic random access to fasta subsequences", "homepage": "https://pypi.python.org/pypi/pyfaidx"}, "pyGenomeTracks": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pyGenomeTracks/3.7-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "argcomplete-2.0.0, argh-0.26.2, asciitree-0.3.3, cooler-0.8.11, cytoolz-0.10.1, dill-0.3.5.1, gffutils-0.11.0, HiCMatrix-15, multiprocess-0.70.13, pyGenomeTracks-3.7, pypairix-0.3.7, toolz-0.12.0"}, "pyGenomeTracks/3.8-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argcomplete-2.0.0, argh-0.27.2, gffutils-0.11.1, pyGenomeTracks-3.8, pypairix-0.3.7"}}, "description": "pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable.", "homepage": "https://pygenometracks.readthedocs.io"}, "PyGObject": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyGObject/3.42.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PyGObject is a Python package which provides bindings for GObject basedlibraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more.", "homepage": "https://pygobject.readthedocs.io/"}, "pygraphviz": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pygraphviz/1.11-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pygraphviz-1.11"}}, "description": "PyGraphviz is a Python interface to the Graphviz graph layout and visualization package. With PyGraphviz you can create, edit, read, write, and draw graphs using Python to access the Graphviz graph data structure and layout algorithms.", "homepage": "https://pygraphviz.github.io"}, "PyInstaller": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyInstaller/6.3.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "altgraph-0.17.4, packaging-23.2, PyInstaller-6.3.0, pyinstaller-hooks-contrib-2023.12"}}, "description": "PyInstaller bundles a Python application and all its dependencies into a single package. The user can run the packaged app without installing a Python interpreter or any modules.", "homepage": "https://pyinstaller.org/en/stable/"}, "pyiron": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pyiron/0.2.6-hpcugent-2023-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "colorama-0.4.5, defusedxml-0.7.1, dill-0.3.5.1, gitdb-4.0.9, GitPython-3.1.27, greenlet-1.1.3, h5io-0.1.7, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2023, pysqa-0.0.3, seekpath-2.0.1, smmap-5.0.0, SQLAlchemy-1.4.41"}, "pyiron/0.2.6-hpcugent-2020-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2020, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19"}, "pyiron/0.2.6-hpcugent-2021-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2021, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19"}, "pyiron/0.2.6-hpcugent-2022b-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2022b, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19"}, "pyiron/0.2.6-hpcugent-2022-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2022, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19"}, "pyiron/0.2.6-hpcugent-2022c-intel-2020a-Python-3.8.2": {"clusters": ["skitty"], "extensions": "colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2022c, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19"}}, "description": "An integrated development environment (IDE) for computational materials science.", "homepage": "https://github.com/pyiron/pyiron"}, "PyKeOps": {"clusters": ["accelgor", "joltik"], "versions": {"PyKeOps/2.0-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "dill-0.3.5.1, keopscore-2.0, multiprocess-0.70.13, pykeops-2.0"}}, "description": "PyKeOps contains the python bindings (numpy and pytorch) for the cpp/cuda library KeOps.", "homepage": "https://www.kernel-operations.io/keops/python"}, "pymatgen": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pymatgen/2022.9.21-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "emmet-core-0.36.8, latexcodec-2.0.1, monty-2022.9.9, mp-api-0.27.5, palettable-3.3.0, pybtex-0.24.0, pydantic-1.10.2, pymatgen-2022.9.21, spglib-1.16.5, uncertainties-3.1.7"}, "pymatgen/2022.0.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "monty-2021.3.3, numpy-1.20.1, palettable-3.3.0, pymatgen-2022.0.4, ruamel.yaml-0.16.13, ruamel.yaml.clib-0.2.2, uncertainties-3.1.5"}}, "description": "Python Materials Genomics is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes.", "homepage": "https://pypi.python.org/pypi/pymatgen"}, "PyMC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyMC/5.9.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cachetools-5.3.1, fastprogress-1.0.3, pymc-5.9.0"}}, "description": "PyMC is a probabilistic programming library for Python that allows users to build Bayesian models with a simple Python API and fit them using Markov chain Monte Carlo (MCMC) methods.", "homepage": "https://www.pymc.io"}, "PyMC3": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"PyMC3/3.11.1-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "fastprogress-1.0.0, patsy-0.5.2, pymc3-3.11.1"}, "PyMC3/3.8-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "arviz-0.7.0, patsy-0.5.1, pymc3-3.8, xarray-0.15.1"}, "PyMC3/3.8-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "arviz-0.7.0, patsy-0.5.1, pymc3-3.8, xarray-0.15.1"}, "PyMC3/3.11.1-intel-2020b": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "arviz-0.11.1, dill-0.3.3, fastprogress-1.0.0, patsy-0.5.1, pymc3-3.11.1, typing_extensions-3.7.4.3"}, "PyMC3/3.11.1-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "arviz-0.11.1, dill-0.3.3, fastprogress-1.0.0, patsy-0.5.1, pymc3-3.11.1, typing_extensions-3.7.4.3"}}, "description": "Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano", "homepage": "https://docs.pymc.io/"}, "PyMDE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyMDE/0.1.18-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "pymde-0.1.18, pynndescent-0.5.11"}, "PyMDE/0.1.18-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pymde-0.1.18, pynndescent-0.5.11"}}, "description": "PyMDE is a Python library for computing vector embeddings of items, such as images, biological cells,nodes in a network, or any other type of abstract object.", "homepage": "https://pymde.org"}, "PyMOL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyMOL/2.5.0-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Pmw-2.0.1, PyMOL-2.5.0"}}, "description": "PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories.It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!", "homepage": "https://github.com/schrodinger/pymol-open-source"}, "pyobjcryst": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"pyobjcryst/2.2.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pyobjcryst/2.1.0.post2-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "pyobjcryst/2.2.1-intel-2020a-Python-3.8.2": {"clusters": ["skitty"]}}, "description": "Python bindings to ObjCryst++, the Object-Oriented Crystallographic Library.", "homepage": "https://github.com/diffpy/pyobjcryst"}, "pyodbc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pyodbc/4.0.39-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pyodbc-4.0.39"}}, "description": "pyodbc is an open source Python module that makes accessing ODBC databases simple. It implements the DB API 2.0 specification but is packed with even more Pythonic convenience.", "homepage": "https://github.com/mkleehammer/pyodbc"}, "Pyomo": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Pyomo/6.4.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "ply-3.11, Pyomo-6.4.2, PyUtilib-6.0.0"}}, "description": "Pyomo is a Python-based open-source software package that supports a diverse set of optimization capabilities for formulating and analyzing optimization models.", "homepage": "https://www.pyomo.org/"}, "PyOpenCL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyOpenCL/2021.2.13-foss-2021b-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"], "extensions": "appdirs-1.4.4, pyopencl-2021.2.13, pytools-2021.2.9"}, "PyOpenCL/2023.1.4-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "appdirs-1.4.4, pyopencl-2023.1.4, pytools-2023.1.1"}, "PyOpenCL/2023.1.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "appdirs-1.4.4, pyopencl-2023.1.4, pytools-2023.1.1"}, "PyOpenCL/2023.1.4-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pyopencl-2023.1.4, pytools-2023.1.1"}, "PyOpenCL/2021.1.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "appdirs-1.4.4, pyopencl-2021.1.2, pytools-2021.1"}}, "description": "PyOpenCL lets you access GPUs and other massively parallel compute devices from Python.", "homepage": "https://mathema.tician.de/software/pyopencl/"}, "PyOpenGL": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyOpenGL/3.1.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PyOpenGL/3.1.6-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "PyOpenGL-3.1.6"}, "PyOpenGL/3.1.7-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "PyOpenGL-3.1.7"}, "PyOpenGL/3.1.5-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyOpenGL/3.1.5-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs.", "homepage": "http://pyopengl.sourceforge.net"}, "pyproj": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pyproj/3.3.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pyproj/3.4.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pyproj/3.5.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pyproj/3.6.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pyproj/2.4.2-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "pyproj/2.6.1.post1-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "pyproj/3.0.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python interface to PROJ4 library for cartographic transformations", "homepage": "https://pyproj4.github.io/pyproj"}, "PyPy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyPy/7.3.12-3.10": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A fast, compliant alternative implementation of Python", "homepage": "https://www.pypy.org"}, "PyQt5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyQt5/5.15.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyQt5/5.15.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyQt5/5.15.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyQt5/5.15.7-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyQt5/5.15.1-GCCcore-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PyQt5/5.15.4-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company.This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company\u2019s Qt WebEngine framework.", "homepage": "https://www.riverbankcomputing.com/software/pyqt"}, "PyQtGraph": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyQtGraph/0.13.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyQtGraph/0.12.3-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PyQtGraph is a pure-python graphics and GUI library built on PyQt5/PySide2 and numpy.", "homepage": "http://www.pyqtgraph.org/"}, "pyro-ppl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pyro-ppl/1.8.4-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "opt_einsum-3.3.0, pyro-api-0.1.2, pyro-ppl-1.8.4"}, "pyro-ppl/1.8.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "opt_einsum-3.3.0, pyro-api-0.1.2, pyro-ppl-1.8.4"}, "pyro-ppl/1.5.2-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "opt_einsum-3.3.0, pyro-ppl-1.5.2"}}, "description": "Pyro is a flexible, scalable deep probabilistic programming library built on PyTorch.", "homepage": "https://github.com/pyro-ppl/pyro"}, "Pysam": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pysam/0.16.0.1-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pysam/0.16.0.1-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pysam/0.17.0-GCC-11.2.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pysam/0.17.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Pysam/0.18.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Pysam/0.19.1-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pysam/0.21.0-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pysam/0.22.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pysam/0.15.3-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Pysam/0.15.3-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Pysam/0.16.0.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Pysam/0.16.0.1-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Pysam/0.16.0.1-GCC-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Pysam/0.16.0.1-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Pysam/0.16.0.1-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.", "homepage": "https://github.com/pysam-developers/pysam"}, "PySCF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PySCF/1.7.6-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PySCF/1.7.6-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "PySCF/2.4.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "dftd3-94091d8, dmrgscf-4ff57bf, doci-08079a9, fciqmc-ee98fb4, icmpspt-f26062b, mbd-485c18c, MCfun-0.2.2, naive-hci-0c28d6e, properties-8b94d8d, pyqmc-0.6.0, qsdopt-3ad2c02, semiempirical-470d716, shciscf-e8985e7, tblis-0d4dfd2, zquatev-4eb41b1"}, "PySCF/2.1.1-foss-2022a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "dftd3-d214021, dmrgscf-4ff57bf, doci-08079a9, fciqmc-c7c30bb, icmpspt-f26062b, mbd-485c18c, MCfun-1a9ae31, naive-hci-0c28d6e, properties-92a4df7, pyqmc-0.5.0, qsdopt-3ad2c02, semiempirical-327d65e, shciscf-dd398d2, tblis-a1efbc0, zquatev-4eb41b1"}}, "description": "PySCF is an open-source collection of electronic structure modules powered by Python.", "homepage": "http://www.pyscf.org"}, "pyspoa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pyspoa/0.0.8-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pyspoa/0.0.8-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pyspoa/0.0.9-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pyspoa/0.0.4-GCC-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "pyspoa/0.0.8-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python bindings to spoa.", "homepage": "https://github.com/nanoporetech/pyspoa"}, "PyTables": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyTables/3.6.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyTables/3.6.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyTables/3.6.1-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyTables/3.8.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "blosc2-2.0.0, tables-3.8.0"}, "PyTables/3.5.2-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "skitty"]}, "PyTables/3.6.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PyTables/3.6.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PyTables/3.6.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyTables/3.6.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PyTables/3.6.1-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browse, process and search very large amounts of data. One important feature of PyTables is that it optimizes memory and disk resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as relational or object oriented databases.", "homepage": "https://www.pytables.org"}, "PyTensor": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyTensor/2.17.1-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cons-0.4.6, etuples-0.3.9, logical-unification-0.4.6, miniKanren-1.0.3, multipledispatch-1.0.0, PyTensor-2.17.1, toolz-0.12.0"}}, "description": "Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs", "homepage": "https://github.com/pymc-devs/pytensor"}, "pytest-flakefinder": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pytest-flakefinder/1.1.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Runs tests multiple times to expose flakiness.", "homepage": "https://github.com/dropbox/pytest-flakefinder"}, "pytest-rerunfailures": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pytest-rerunfailures/11.1-GCCcore-11.3.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "pytest-rerunfailures/12.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pytest-rerunfailures/12.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pytest plugin to re-run tests to eliminate flaky failures.", "homepage": "https://github.com/pytest-dev/pytest-rerunfailures"}, "pytest-shard": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pytest-shard/0.1.2-GCCcore-11.3.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "pytest-shard/0.1.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "pytest-shard/0.1.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pytest plugin to support parallelism across multiple machines.Shards tests based on a hash of their test name enabling easy parallelism across machines,suitable for a wide variety of continuous integration services.Tests are split at the finest level of granularity, individual test cases,enabling parallelism even if all of your tests are in a single file(or even single parameterized test method).", "homepage": "https://github.com/AdamGleave/pytest-shard"}, "pytest-xdist": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pytest-xdist/2.3.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "apipkg-1.5, execnet-1.9.0, pytest-forked-1.3.0, pytest-xdist-2.3.0"}, "pytest-xdist/2.3.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "apipkg-1.5, execnet-1.9.0, pytest-forked-1.3.0, pytest-xdist-2.3.0"}, "pytest-xdist/2.5.0-GCCcore-11.2.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "apipkg-1.5, execnet-1.9.0, pytest-forked-1.4.0, pytest-xdist-2.5.0"}, "pytest-xdist/2.5.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "apipkg-1.5, execnet-1.9.0, pytest-forked-1.4.0, pytest-xdist-2.5.0"}, "pytest-xdist/3.3.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "apipkg-3.0.2, execnet-2.0.2, pytest-xdist-3.3.1"}}, "description": "xdist: pytest distributed testing pluginThe pytest-xdist plugin extends pytest with some unique test execution modes: * test run parallelization: if you have multiple CPUs or hosts you can use those for a combined test run. This allows to speed up development or to use special resources of remote machines. * --looponfail: run your tests repeatedly in a subprocess. After each run pytest waits until a file in your project changes and then re-runs the previously failing tests. This is repeated until all tests pass after which again a full run is performed. * Multi-Platform coverage: you can specify different Python interpreters or different platforms and run tests in parallel on all of them.Before running tests remotely, pytest efficiently \u201crsyncs\u201d yourprogram source code to the remote place. All test results are reportedback and displayed to your local terminal. You may specify differentPython versions and interpreters.", "homepage": "https://github.com/pytest-dev/pytest-xdist"}, "pytest": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pytest/7.4.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "elementpath-4.1.5, flit-core-3.9.0, hypothesis-6.88.1, pytest-7.4.2, setuptools-scm-8.0.4, xmlschema-2.5.0"}}, "description": "The pytest framework makes it easy to write small,readable tests, and can scale to support complex functional testing forapplications and libraries.", "homepage": "https://docs.pytest.org/en/latest/"}, "pythermalcomfort": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pythermalcomfort/2.8.10-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Package to calculate several thermal comfort indices (e.g. PMV, PPD, SET, adaptive) and convert physical variables.", "homepage": "https://github.com/CenterForTheBuiltEnvironment/pythermalcomfort"}, "Python-bundle-PyPI": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Python-bundle-PyPI/2023.06-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.13, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.1, attrs-23.1.0, Babel-2.12.1, backports.entry-points-selectable-1.2.0, backports.functools_lru_cache-1.6.5, bitstring-4.0.2, blist-1.3.6, CacheControl-0.12.14, cachy-0.3.0, certifi-2023.5.7, cffi-1.15.1, chardet-5.1.0, charset-normalizer-3.1.0, cleo-2.0.1, click-8.1.3, cloudpickle-2.2.1, colorama-0.4.6, commonmark-0.9.1, crashtest-0.4.1, Cython-0.29.35, decorator-5.1.1, distlib-0.3.6, distro-1.8.0, docopt-0.6.2, docutils-0.20.1, doit-0.36.0, dulwich-0.21.5, ecdsa-0.18.0, editables-0.3, exceptiongroup-1.1.1, execnet-1.9.0, filelock-3.12.2, fsspec-2023.6.0, future-0.18.3, glob2-0.7, html5lib-1.1, idna-3.4, imagesize-1.4.1, importlib_metadata-6.7.0, importlib_resources-5.12.0, iniconfig-2.0.0, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jaraco.classes-3.2.3, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.2.0, jsonschema-4.17.3, keyring-23.13.1, keyrings.alt-4.2.0, liac-arff-2.5.0, lockfile-0.12.2, markdown-it-py-3.0.0, MarkupSafe-2.1.3, mdurl-0.1.2, mock-5.0.2, more-itertools-9.1.0, msgpack-1.0.5, netaddr-0.8.0, netifaces-0.11.0, packaging-23.1, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.11.1, pbr-5.11.1, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.8.0, pluggy-1.2.0, pooch-1.7.0, psutil-5.9.5, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.5.0, pycparser-2.21, pycryptodome-3.18.0, pydevtool-0.3.0, Pygments-2.15.1, Pygments-2.15.1, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.1.0, pyrsistent-0.19.3, pytest-7.4.0, pytest-xdist-3.3.1, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2023.3, rapidfuzz-2.15.1, regex-2023.6.3, requests-2.31.0, requests-toolbelt-1.0.0, rich-13.4.2, rich-click-1.6.1, scandir-1.10.0, SecretStorage-3.3.3, semantic_version-2.10.0, shellingham-1.5.0.post1, simplegeneric-0.8.1, simplejson-3.19.1, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, Sphinx-7.0.1, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-applehelp-1.0.4, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.1, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.9.0, threadpoolctl-3.1.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.11.8, typing_extensions-4.6.3, ujson-5.8.0, urllib3-1.26.16, wcwidth-0.2.6, webencodings-0.5.1, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.15.0"}, "Python-bundle-PyPI/2023.10-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.13, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.1, attrs-23.1.0, Babel-2.13.1, backports.entry-points-selectable-1.2.0, backports.functools_lru_cache-1.6.6, bitarray-2.8.2, bitstring-4.1.2, blist-1.3.6, cachecontrol-0.13.1, cachy-0.3.0, certifi-2023.7.22, cffi-1.16.0, chardet-5.2.0, charset-normalizer-3.3.1, cleo-2.0.1, click-8.1.7, cloudpickle-3.0.0, colorama-0.4.6, commonmark-0.9.1, crashtest-0.4.1, Cython-3.0.4, decorator-5.1.1, distlib-0.3.7, distro-1.8.0, docopt-0.6.2, docutils-0.20.1, doit-0.36.0, dulwich-0.21.6, ecdsa-0.18.0, editables-0.5, exceptiongroup-1.1.3, execnet-2.0.2, filelock-3.13.0, fsspec-2023.10.0, future-0.18.3, glob2-0.7, html5lib-1.1, idna-3.4, imagesize-1.4.1, importlib_metadata-6.8.0, importlib_resources-6.1.0, iniconfig-2.0.0, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jaraco.classes-3.3.0, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.3.2, jsonschema-4.17.3, keyring-24.2.0, keyrings.alt-5.0.0, liac-arff-2.5.0, lockfile-0.12.2, markdown-it-py-3.0.0, MarkupSafe-2.1.3, mdurl-0.1.2, mock-5.1.0, more-itertools-10.1.0, msgpack-1.0.7, netaddr-0.9.0, netifaces-0.11.0, packaging-23.2, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.11.2, pbr-5.11.1, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.11.0, pluggy-1.3.0, pooch-1.8.0, psutil-5.9.6, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.5.0, pycparser-2.21, pycryptodome-3.19.0, pydevtool-0.3.0, Pygments-2.16.1, Pygments-2.16.1, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.1.1, pyrsistent-0.20.0, pytest-7.4.3, pytest-xdist-3.3.1, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2023.3.post1, rapidfuzz-2.15.2, regex-2023.10.3, requests-2.31.0, requests-toolbelt-1.0.0, rich-13.6.0, rich-click-1.7.0, scandir-1.10.0, SecretStorage-3.3.3, semantic_version-2.10.0, shellingham-1.5.4, simplegeneric-0.8.1, simplejson-3.19.2, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, sphinx-7.2.6, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-jsmath-1.0.1, sphinxcontrib_applehelp-1.0.7, sphinxcontrib_devhelp-1.0.5, sphinxcontrib_htmlhelp-2.0.4, sphinxcontrib_qthelp-1.0.6, sphinxcontrib_serializinghtml-1.1.9, sphinxcontrib_websupport-1.2.6, tabulate-0.9.0, threadpoolctl-3.2.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.12.1, typing_extensions-4.8.0, ujson-5.8.0, urllib3-2.0.7, wcwidth-0.2.8, webencodings-0.5.1, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.17.0"}}, "description": "Bundle of Python packages from PyPI", "homepage": "https://python.org/"}, "python-igraph": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"python-igraph/0.9.6-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "python-igraph-0.9.6, texttable-1.6.4"}, "python-igraph/0.9.8-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "igraph-0.9.8, texttable-1.6.4"}, "python-igraph/0.10.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "igraph-0.10.3, texttable-1.6.7"}, "python-igraph/0.11.4-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cairocffi-1.6.1, igraph-0.11.4, texttable-1.7.0"}, "python-igraph/0.8.0-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "python-igraph-0.8.0, texttable-1.6.3"}, "python-igraph/0.9.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "python-igraph-0.9.0, texttable-1.6.3"}, "python-igraph/0.9.0-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "python-igraph-0.9.0, texttable-1.6.3"}}, "description": "Python interface to the igraph high performance graph library, primarily aimed at complex network research and analysis.", "homepage": "https://igraph.org/python"}, "python-irodsclient": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"python-irodsclient/1.1.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "defusedxml-0.7.1, prettytable-3.3.0, python-irodsclient-1.1.4"}, "python-irodsclient/1.1.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "defusedxml-0.7.1, prettytable-3.3.0, python-irodsclient-1.1.4"}}, "description": "A python API for iRODS", "homepage": "https://github.com/irods/python-irodsclient"}, "python-isal": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"python-isal/0.11.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "python-isal/0.11.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "python-isal/1.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "python-isal/0.11.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.", "homepage": "https://github.com/pycompression/python-isal"}, "python-louvain": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"python-louvain/0.16-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Louvain algorithm for community detection", "homepage": "https://pypi.org/project/python-louvain"}, "python-parasail": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"python-parasail/1.2.4-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "python-parasail/1.2.4-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "python-parasail/1.3.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "python-parasail/1.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "python-parasail/1.2-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "python-parasail/1.2.2-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "python-parasail/1.2.4-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "Python Bindings for the Parasail C Library", "homepage": "https://github.com/jeffdaily/parasail-python"}, "python-telegram-bot": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"python-telegram-bot/20.0a0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "anyio-3.6.2, APScheduler-3.9.1, backports.zoneinfo-0.2.1, cachetools-5.0.0, charset-normalizer-2.1.1, flit_core-3.7.1, h11-0.12.0, httpcore-0.14.7, httpx-0.22.0, idna-3.4, python-telegram-bot-20.0a0, pytz_deprecation_shim-0.1.0.post0, requests-2.28.1, rfc3986-1.5.0, sniffio-1.3.0, tornado-6.1, tzdata-2022.5, tzlocal-4.2"}}, "description": "This library provides a pure Python, asynchronous interface for the Telegram Bot API. It's compatible with Python versions 3.7+.", "homepage": "https://python-telegram-bot.org/"}, "Python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Python/2.7.16-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.7.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2019.9.11, cffi-1.12.3, chardet-3.0.4, Click-7.0, configparser-4.0.2, contextlib2-0.5.5, cryptography-2.7, Cython-0.29.13, deap-1.3.0, decorator-4.4.0, docopt-0.6.2, docutils-0.15.2, ecdsa-0.13.2, enum34-1.1.6, funcsigs-1.0.2, future-0.17.1, idna-2.8, imagesize-1.1.0, importlib_metadata-0.22, intervaltree-3.0.2, ipaddress-1.0.22, Jinja2-2.10.1, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.1, paramiko-2.6.0, pathlib2-2.3.4, paycheck-1.0.2, pbr-5.4.3, pip-19.2.3, pluggy-0.13.0, psutil-5.6.3, py-1.8.0, py_expression_eval-0.3.9, pyasn1-0.4.7, pycparser-2.19, pycrypto-2.6.1, Pygments-2.4.2, PyNaCl-1.3.0, pyparsing-2.4.2, pytest-4.6.5, python-dateutil-2.8.0, pytz-2019.2, requests-2.22.0, scandir-1.10.0, setuptools-41.2.0, setuptools_scm-3.3.3, singledispatch-3.4.0.3, six-1.12.0, snowballstemmer-1.9.1, sortedcontainers-2.1.0, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.2, tabulate-0.8.3, typing-3.7.4.1, ujson-1.35, urllib3-1.25.3, virtualenv-16.7.5, wcwidth-0.1.7, wheel-0.33.6, xlrd-1.2.0, zipp-0.6.0"}, "Python/2.7.18-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.12, appdirs-1.4.3, asn1crypto-1.3.0, atomicwrites-1.3.0, attrs-19.3.0, Babel-2.8.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2020.4.5.1, cffi-1.14.0, chardet-3.0.4, click-7.1.1, configparser-4.0.2, contextlib2-0.6.0.post1, cryptography-2.9.2, Cython-0.29.16, decorator-4.4.2, distlib-0.3.0, docopt-0.6.2, docutils-0.16, ecdsa-0.15, enum34-1.1.10, filelock-3.0.12, funcsigs-1.0.2, future-0.18.2, idna-2.9, imagesize-1.2.0, importlib_metadata-1.6.0, importlib_resources-1.4.0, intervaltree-3.0.2, ipaddress-1.0.23, Jinja2-2.11.2, joblib-0.14.1, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-20.3, paramiko-2.7.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.4.5, pip-20.0.2, pluggy-0.13.1, psutil-5.7.0, py-1.8.1, py_expression_eval-0.3.9, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, PyNaCl-1.3.0, pyparsing-2.4.7, pytest-4.6.9, python-dateutil-2.8.1, pytz-2019.3, requests-2.23.0, scandir-1.10.0, setuptools-44.0.0, setuptools_scm-3.5.0, singledispatch-3.4.0.3, six-1.14.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.2, tabulate-0.8.7, toml-0.10.0, typing-3.7.4.1, ujson-2.0.3, urllib3-1.25.9, virtualenv-20.0.18, wcwidth-0.1.9, wheel-0.34.2, xlrd-1.2.0, zipp-1.2.0"}, "Python/2.7.18-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.12, appdirs-1.4.4, argparse-1.4.0, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-20.2.0, Babel-2.8.0, backports.functools-lru-cache-1.6.1, bcrypt-3.1.7, bitstring-3.1.7, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2020.6.20, cffi-1.14.3, chardet-3.0.4, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.3, configparser-4.0.2, contextlib2-0.6.0.post1, cryptography-3.1.1, Cython-0.29.21, decorator-4.4.2, distlib-0.3.1, docopt-0.6.2, docutils-0.16, ecdsa-0.16.0, entrypoints-0.3, enum34-1.1.10, filelock-3.0.12, funcsigs-1.0.2, functools32-3.2.3-2, future-0.18.2, futures-3.3.0, glob2-0.6, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib-metadata-1.7.0, importlib_resources-3.0.0, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, Jinja2-2.11.2, joblib-0.14.1, jsonschema-3.2.0, keyring-18.0.1, keyrings.alt-3.2.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, msgpack-1.0.0, netaddr-0.8.0, netifaces-0.10.9, nose-1.3.7, packaging-20.4, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.5.0, pexpect-4.8.0, pip-20.3.4, pkginfo-1.5.0.1, pluggy-0.13.1, poetry-1.1.3, poetry-core-1.0.0, psutil-5.7.2, ptyprocess-0.6.0, py-1.9.0, py_expression_eval-0.3.10, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, pylev-1.3.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.16.1, pytest-4.6.11, python-dateutil-2.8.1, pytoml-0.1.21, pytz-2020.1, regex-2020.10.11, requests-2.24.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-2.3.1, setuptools-44.1.1, setuptools_scm-4.1.2, shellingham-1.3.2, simplegeneric-0.8.1, simplejson-3.17.2, singledispatch-3.4.0.3, six-1.15.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-1.8.5, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-websupport-1.1.2, subprocess32-3.5.4, tabulate-0.8.7, toml-0.10.1, tomlkit-0.7.0, typing-3.7.4.3, ujson-2.0.3, urllib3-1.25.10, virtualenv-20.0.34, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.35.1, xlrd-1.2.0, zipp-1.2.0"}, "Python/2.7.18-GCCcore-10.3.0-bare": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Python/2.7.18-GCCcore-11.2.0-bare": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Python/2.7.18-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.12, appdirs-1.4.4, argparse-1.4.0, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-21.2.0, Babel-2.9.1, backports.entry_points_selectable-1.1.0, backports.functools_lru_cache-1.6.4, bcrypt-3.1.7, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2021.5.30, cffi-1.14.6, chardet-4.0.0, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.4, configparser-4.0.2, contextlib2-0.6.0.post1, cryptography-3.3.2, Cython-0.29.24, decorator-4.4.2, distlib-0.3.2, docopt-0.6.2, docutils-0.17.1, ecdsa-0.17.0, entrypoints-0.3, enum34-1.1.10, filelock-3.0.12, funcsigs-1.0.2, functools32-3.2.3-2, future-0.18.2, futures-3.3.0, glob2-0.6, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib_metadata-1.7.0, importlib_resources-3.3.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, Jinja2-2.11.3, joblib-0.14.1, jsonschema-3.2.0, keyring-18.0.1, keyrings.alt-3.2.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, msgpack-1.0.2, netaddr-0.8.0, netifaces-0.11.0, nose-1.3.7, packaging-20.9, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.6, paycheck-1.0.2, pbr-5.6.0, pexpect-4.8.0, pip-20.3.4, pkginfo-1.7.1, platformdirs-2.0.2, pluggy-0.13.1, poetry-1.1.7, poetry-core-1.0.3, psutil-5.8.0, ptyprocess-0.7.0, py-1.10.0, py_expression_eval-0.3.13, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, pylev-1.4.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.16.1, pytest-4.6.11, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2021.1, regex-2021.3.17, requests-2.26.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-2.3.1, setuptools-44.1.1, setuptools_scm-5.0.2, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.3, singledispatch-3.7.0, six-1.16.0, snowballstemmer-2.1.0, sortedcontainers-2.4.0, Sphinx-1.8.6, sphinx-bootstrap-theme-0.8.0, sphinxcontrib-websupport-1.1.2, subprocess32-3.5.4, tabulate-0.8.9, toml-0.10.2, tomlkit-0.7.2, typing-3.10.0.0, ujson-2.0.3, urllib3-1.26.6, virtualenv-20.7.0, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.36.2, xlrd-2.0.1, zipp-1.2.0"}, "Python/2.7.18-GCCcore-11.3.0-bare": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Python/2.7.18-GCCcore-12.2.0-bare": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Python/2.7.18-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pip-20.3.4, setuptools-44.1.1, wheel-0.37.1"}, "Python/3.7.4-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.7.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2019.9.11, cffi-1.12.3, chardet-3.0.4, Click-7.0, cryptography-2.7, Cython-0.29.13, deap-1.3.0, decorator-4.4.0, docopt-0.6.2, docutils-0.15.2, ecdsa-0.13.2, future-0.17.1, idna-2.8, imagesize-1.1.0, importlib_metadata-0.22, intervaltree-3.0.2, ipaddress-1.0.22, Jinja2-2.10.1, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-7.2.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.1, paramiko-2.6.0, pathlib2-2.3.4, paycheck-1.0.2, pbr-5.4.3, pip-19.2.3, pluggy-0.13.0, psutil-5.6.3, py-1.8.0, py_expression_eval-0.3.9, pyasn1-0.4.7, pycparser-2.19, pycrypto-2.6.1, Pygments-2.4.2, PyNaCl-1.3.0, pyparsing-2.4.2, pytest-5.1.2, python-dateutil-2.8.0, pytz-2019.2, requests-2.22.0, scandir-1.10.0, setuptools-41.2.0, setuptools_scm-3.3.3, six-1.12.0, snowballstemmer-1.9.1, sortedcontainers-2.1.0, Sphinx-2.2.0, sphinxcontrib-applehelp-1.0.1, sphinxcontrib-devhelp-1.0.1, sphinxcontrib-htmlhelp-1.0.2, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.2, sphinxcontrib-serializinghtml-1.1.3, sphinxcontrib-websupport-1.1.2, tabulate-0.8.3, ujson-1.35, urllib3-1.25.3, virtualenv-16.7.5, wcwidth-0.1.7, wheel-0.33.6, xlrd-1.2.0, zipp-0.6.0"}, "Python/3.8.2-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.12, appdirs-1.4.3, asn1crypto-1.3.0, atomicwrites-1.3.0, attrs-19.3.0, Babel-2.8.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2020.4.5.1, cffi-1.14.0, chardet-3.0.4, click-7.1.1, cryptography-2.9.2, Cython-0.29.16, decorator-4.4.2, distlib-0.3.0, docopt-0.6.2, docutils-0.16, ecdsa-0.15, filelock-3.0.12, future-0.18.2, idna-2.9, imagesize-1.2.0, importlib_metadata-1.6.0, intervaltree-3.0.2, ipaddress-1.0.23, Jinja2-2.11.2, joblib-0.14.1, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-4.0.1, more-itertools-8.2.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-20.3, paramiko-2.7.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.4.5, pip-20.0.2, pluggy-0.13.1, psutil-5.7.0, py-1.8.1, py_expression_eval-0.3.9, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, PyNaCl-1.3.0, pyparsing-2.4.7, pytest-5.4.1, python-dateutil-2.8.1, pytz-2019.3, requests-2.23.0, scandir-1.10.0, setuptools-45.2.0, setuptools_scm-3.5.0, six-1.14.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-3.0.2, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-1.0.3, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.4, sphinxcontrib-websupport-1.2.1, tabulate-0.8.7, toml-0.10.0, ujson-2.0.3, urllib3-1.25.9, virtualenv-20.0.18, wcwidth-0.1.9, wheel-0.34.2, xlrd-1.2.0, zipp-1.2.0"}, "Python/3.8.6-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-20.2.0, Babel-2.8.0, bcrypt-3.2.0, bitstring-3.1.7, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2020.6.20, cffi-1.14.3, chardet-3.0.4, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.3, crashtest-0.3.1, cryptography-3.1.1, Cython-0.29.21, decorator-4.4.2, distlib-0.3.1, docopt-0.6.2, docutils-0.16, ecdsa-0.16.0, filelock-3.0.12, flit-3.0.0, flit-core-3.0.0, fsspec-0.8.4, future-0.18.2, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib_metadata-2.0.0, iniconfig-1.0.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.4.3, Jinja2-2.11.2, joblib-0.17.0, jsonschema-3.2.0, keyring-21.4.0, keyrings.alt-4.0.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-4.0.2, more-itertools-8.5.0, msgpack-1.0.0, netaddr-0.8.0, netifaces-0.10.9, nose-1.3.7, packaging-20.4, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.5.0, pexpect-4.8.0, pip-20.2.3, pkginfo-1.5.0.1, pluggy-0.13.1, poetry-1.1.3, poetry-core-1.0.0, psutil-5.7.2, ptyprocess-0.6.0, py-1.9.0, py_expression_eval-0.3.10, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.7.1, pylev-1.3.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.17.3, pytest-6.1.1, python-dateutil-2.8.1, pytoml-0.1.21, pytz-2020.1, regex-2020.10.11, requests-2.24.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.1.2, setuptools-50.3.0, setuptools_scm-4.1.2, shellingham-1.3.2, simplegeneric-0.8.1, simplejson-3.17.2, six-1.15.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-3.2.1, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-1.0.3, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.4, sphinxcontrib-websupport-1.2.4, tabulate-0.8.7, threadpoolctl-2.1.0, toml-0.10.1, tomlkit-0.7.0, ujson-4.0.1, urllib3-1.25.10, virtualenv-20.0.34, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.35.1, xlrd-1.2.0, zipp-3.3.0"}, "Python/3.9.5-GCCcore-10.3.0-bare": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Python/3.9.5-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-21.2.0, Babel-2.9.1, bcrypt-3.2.0, bitstring-3.1.7, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2020.12.5, cffi-1.14.5, chardet-4.0.0, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.4, crashtest-0.3.1, cryptography-3.4.7, Cython-0.29.23, decorator-5.0.7, distlib-0.3.1, docopt-0.6.2, docutils-0.17.1, ecdsa-0.16.1, filelock-3.0.12, flit-3.2.0, flit-core-3.2.0, fsspec-2021.4.0, future-0.18.2, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib_metadata-4.0.1, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.6.0, Jinja2-2.11.3, joblib-1.0.1, jsonschema-3.2.0, keyring-21.8.0, keyrings.alt-4.0.2, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-4.0.3, more-itertools-8.7.0, msgpack-1.0.2, netaddr-0.8.0, netifaces-0.10.9, nose-1.3.7, packaging-20.9, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.6.0, pexpect-4.8.0, pip-21.1.1, pkginfo-1.7.0, pluggy-0.13.1, poetry-1.1.6, poetry-core-1.0.3, psutil-5.8.0, ptyprocess-0.7.0, py-1.10.0, py_expression_eval-0.3.13, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.9.0, pylev-1.3.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.17.3, pytest-6.2.4, python-dateutil-2.8.1, pytoml-0.1.21, pytz-2021.1, regex-2021.4.4, requests-2.25.1, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.3.1, semantic_version-2.8.5, setuptools-56.2.0, setuptools-rust-0.12.1, setuptools_scm-6.0.1, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.2, six-1.16.0, snowballstemmer-2.1.0, sortedcontainers-2.3.0, Sphinx-4.0.0, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-1.0.3, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.4, sphinxcontrib-websupport-1.2.4, tabulate-0.8.9, threadpoolctl-2.1.0, toml-0.10.2, tomlkit-0.7.0, ujson-4.0.2, urllib3-1.26.4, virtualenv-20.4.6, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.36.2, xlrd-2.0.1, zipp-3.4.1"}, "Python/3.9.6-GCCcore-11.2.0-bare": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Python/3.9.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-21.2.0, Babel-2.9.1, backports.entry_points_selectable-1.1.0, backports.functools_lru_cache-1.6.4, bcrypt-3.2.0, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2021.5.30, cffi-1.14.6, chardet-4.0.0, charset-normalizer-2.0.4, cleo-0.8.1, click-8.0.1, clikit-0.6.2, colorama-0.4.4, crashtest-0.3.1, cryptography-3.4.7, Cython-0.29.24, decorator-5.0.9, distlib-0.3.2, docopt-0.6.2, docutils-0.17.1, ecdsa-0.17.0, filelock-3.0.12, flit-3.3.0, flit-core-3.3.0, fsspec-2021.7.0, future-0.18.2, glob2-0.7, html5lib-1.1, idna-3.2, imagesize-1.2.0, importlib_metadata-4.6.3, importlib_resources-5.2.2, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.7.1, Jinja2-3.0.1, joblib-1.0.1, jsonschema-3.2.0, keyring-21.2.0, keyrings.alt-4.1.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-2.0.1, mock-4.0.3, more-itertools-8.8.0, msgpack-1.0.2, netaddr-0.8.0, netifaces-0.11.0, nose-1.3.7, packaging-20.9, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.6, paycheck-1.0.2, pbr-5.6.0, pexpect-4.8.0, pip-21.2.2, pkginfo-1.7.1, platformdirs-2.2.0, pluggy-0.13.1, poetry-1.1.7, poetry-core-1.0.3, psutil-5.8.0, ptyprocess-0.7.0, py-1.10.0, py_expression_eval-0.3.13, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.9.0, pylev-1.4.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.18.0, pytest-6.2.4, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2021.1, regex-2021.8.3, requests-2.26.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.3.1, semantic_version-2.8.5, setuptools-57.4.0, setuptools-rust-0.12.1, setuptools_scm-6.0.1, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.3, six-1.16.0, snowballstemmer-2.1.0, sortedcontainers-2.4.0, Sphinx-4.1.2, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.0, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.8.9, threadpoolctl-2.2.0, toml-0.10.2, tomlkit-0.7.2, typing_extensions-3.10.0.0, ujson-4.0.2, urllib3-1.26.6, virtualenv-20.7.0, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.36.2, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.5.0"}, "Python/3.10.4-GCCcore-11.3.0-bare": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Python/3.10.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.0, attrs-21.4.0, Babel-2.10.1, backports.entry_points_selectable-1.1.1, backports.functools_lru_cache-1.6.4, bcrypt-3.2.2, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.11, cachy-0.3.0, certifi-2021.10.8, cffi-1.15.0, chardet-4.0.0, charset-normalizer-2.0.12, cleo-0.8.1, click-8.1.3, clikit-0.6.2, colorama-0.4.4, crashtest-0.3.1, cryptography-37.0.1, Cython-0.29.28, decorator-5.1.1, distlib-0.3.4, docopt-0.6.2, docutils-0.17.1, ecdsa-0.17.0, editables-0.3, filelock-3.6.0, flit-3.7.1, flit-core-3.7.1, fsspec-2022.3.0, future-0.18.2, glob2-0.7, html5lib-1.1, idna-3.3, imagesize-1.3.0, importlib_metadata-4.11.3, importlib_resources-5.7.1, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.1.0, jsonschema-4.4.0, keyring-23.5.0, keyrings.alt-4.1.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-2.1.1, mock-4.0.3, more-itertools-8.12.0, msgpack-1.0.3, netaddr-0.8.0, netifaces-0.11.0, packaging-20.9, paramiko-2.10.4, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.9.0, pbr-5.8.1, pexpect-4.8.0, pip-22.0.4, pkginfo-1.8.2, platformdirs-2.4.1, pluggy-1.0.0, poetry-1.1.13, poetry-core-1.0.8, psutil-5.9.0, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.4.8, pycparser-2.21, pycrypto-2.6.1, Pygments-2.12.0, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.0.8, pyrsistent-0.18.1, pytest-7.1.2, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2022.1, regex-2022.4.24, requests-2.27.1, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.3.2, semantic_version-2.9.0, setuptools-62.1.0, setuptools-rust-1.3.0, setuptools_scm-6.4.2, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.6, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, Sphinx-4.5.0, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.0, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.8.9, threadpoolctl-3.1.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.10.2, typing_extensions-4.2.0, ujson-5.2.0, urllib3-1.26.9, virtualenv-20.14.1, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.37.1, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.8.0"}, "Python/3.10.8-GCCcore-12.2.0-bare": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Python/3.10.8-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.1, attrs-22.1.0, Babel-2.11.0, backports.entry-points-selectable-1.2.0, backports.functools_lru_cache-1.6.4, bcrypt-4.0.1, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.11, cachy-0.3.0, certifi-2022.9.24, cffi-1.15.1, chardet-5.0.0, charset-normalizer-2.1.1, cleo-1.0.0a5, click-8.1.3, clikit-0.6.2, cloudpickle-2.2.0, colorama-0.4.6, commonmark-0.9.1, crashtest-0.3.1, cryptography-38.0.3, Cython-0.29.32, decorator-5.1.1, distlib-0.3.6, docopt-0.6.2, docutils-0.19, doit-0.36.0, dulwich-0.20.50, ecdsa-0.18.0, editables-0.3, exceptiongroup-1.0.1, execnet-1.9.0, filelock-3.8.0, flit-3.8.0, flit_core-3.8.0, flit_scm-1.7.0, fsspec-2022.11.0, future-0.18.2, glob2-0.7, hatch_fancy_pypi_readme-22.8.0, hatch_vcs-0.2.0, hatchling-1.11.1, html5lib-1.1, idna-3.4, imagesize-1.4.1, importlib_metadata-5.0.0, importlib_resources-5.10.0, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jaraco.classes-3.2.3, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.2.0, jsonschema-4.17.0, keyring-23.11.0, keyrings.alt-4.2.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-2.1.1, mock-4.0.3, more-itertools-9.0.0, msgpack-1.0.4, netaddr-0.8.0, netifaces-0.11.0, packaging-21.3, paramiko-2.12.0, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.10.1, pbr-5.11.0, pexpect-4.8.0, pip-22.3.1, pkginfo-1.8.3, platformdirs-2.5.3, pluggy-1.0.0, poetry-1.2.2, poetry-core-1.3.2, poetry_plugin_export-1.2.0, pooch-1.6.0, psutil-5.9.4, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.4.8, pycparser-2.21, pycryptodome-3.17, pydevtool-0.3.0, Pygments-2.13.0, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.0.9, pyrsistent-0.19.2, pytest-7.2.0, pytest-xdist-3.1.0, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2022.6, regex-2022.10.31, requests-2.28.1, requests-toolbelt-0.9.1, rich-13.1.0, rich-click-1.6.0, scandir-1.10.0, SecretStorage-3.3.3, semantic_version-2.10.0, setuptools-63.4.3, setuptools-rust-1.5.2, setuptools_scm-7.0.5, shellingham-1.5.0, simplegeneric-0.8.1, simplejson-3.17.6, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, Sphinx-5.3.0, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.0, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.9.0, threadpoolctl-3.1.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.11.6, typing_extensions-4.4.0, ujson-5.5.0, urllib3-1.26.12, virtualenv-20.16.6, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.38.4, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.10.0"}, "Python/3.11.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "flit_core-3.9.0, pip-23.1.2, setuptools-67.7.2, wheel-0.40.0"}, "Python/3.11.5-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "flit_core-3.9.0, pip-23.2.1, setuptools-68.2.2, wheel-0.41.2"}, "Python/2.7.15-GCCcore-8.2.0": {"clusters": ["doduo"], "extensions": "alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.6.0, bcrypt-3.1.6, bitstring-3.1.5, blist-1.3.6, certifi-2019.3.9, cffi-1.12.2, chardet-3.0.4, Click-7.0, cryptography-2.6.1, Cython-0.29.6, deap-1.2.2, decorator-4.3.2, docopt-0.6.2, docutils-0.14, ecdsa-0.13, enum34-1.1.6, funcsigs-1.0.2, future-0.17.1, idna-2.8, imagesize-1.1.0, ipaddress-1.0.22, Jinja2-2.10, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-2.0.0, more-itertools-5.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.0, paramiko-2.4.2, pathlib2-2.3.3, paycheck-1.0.2, pbr-5.1.3, pip-19.0.3, pluggy-0.9.0, psutil-5.6.1, py-1.8.0, py_expression_eval-0.3.6, pyasn1-0.4.5, pycparser-2.19, pycrypto-2.6.1, Pygments-2.3.1, PyNaCl-1.3.0, pyparsing-2.3.1, pytest-4.3.1, python-dateutil-2.8.0, pytz-2018.9, requests-2.21.0, scandir-1.10.0, setuptools-40.8.0, setuptools_scm-3.2.0, singledispatch-3.4.0.3, six-1.12.0, snowballstemmer-1.2.1, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.0, tabulate-0.8.3, typing-3.6.6, ujson-1.35, urllib3-1.24.1, virtualenv-16.4.3, wcwidth-0.1.7, wheel-0.33.1, xlrd-1.2.0"}, "Python/3.7.2-GCCcore-8.2.0": {"clusters": ["doduo"], "extensions": "alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.6.0, bcrypt-3.1.6, bitstring-3.1.5, blist-1.3.6, certifi-2019.3.9, cffi-1.12.2, chardet-3.0.4, Click-7.0, cryptography-2.6.1, Cython-0.29.6, deap-1.2.2, decorator-4.3.2, docopt-0.6.2, docutils-0.14, ecdsa-0.13, future-0.17.1, idna-2.8, imagesize-1.1.0, ipaddress-1.0.22, Jinja2-2.10, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-2.0.0, more-itertools-6.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.0, paramiko-2.4.2, pathlib2-2.3.3, paycheck-1.0.2, pbr-5.1.3, pip-19.0.3, pluggy-0.9.0, psutil-5.6.1, py-1.8.0, py_expression_eval-0.3.6, pyasn1-0.4.5, pycparser-2.19, pycrypto-2.6.1, Pygments-2.3.1, PyNaCl-1.3.0, pyparsing-2.3.1, pytest-4.3.1, python-dateutil-2.8.0, pytz-2018.9, requests-2.21.0, scandir-1.10.0, setuptools-40.8.0, setuptools_scm-3.2.0, six-1.12.0, snowballstemmer-1.2.1, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.0, tabulate-0.8.3, ujson-1.35, urllib3-1.24.1, virtualenv-16.4.3, wcwidth-0.1.7, wheel-0.33.1, xlrd-1.2.0"}}, "description": "Python is a programming language that lets you work more quickly and integrate your systems more effectively.", "homepage": "https://python.org/"}, "PyTorch-Ignite": {"clusters": ["accelgor", "joltik"], "versions": {"PyTorch-Ignite/0.4.12-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "pytorch-ignite-0.4.12"}}, "description": "Ignite is a high-level library to help with training and evaluating neuralnetworks in PyTorch flexibly and transparently.", "homepage": "https://pytorch-ignite.ai/"}, "PyTorch-Lightning": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyTorch-Lightning/1.5.9-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "fsspec-2022.1.0, pyDeprecate-0.3.2, pytorch-lightning-1.5.9, torchmetrics-0.7.0"}, "PyTorch-Lightning/1.5.9-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "fsspec-2022.1.0, pyDeprecate-0.3.2, pytorch-lightning-1.5.9, torchmetrics-0.7.0"}, "PyTorch-Lightning/1.8.4-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "aiobotocore-2.3.4, aioitertools-0.11.0, anyio-3.6.1, arrow-1.2.3, blessed-1.19.1, botocore-1.24.21, commonmark-0.9.1, croniter-1.3.8, fastapi-0.79.1, fsspec-2022.7.1, inquirer-2.10.1, itsdangerous-2.1.2, jmespath-1.0.1, lightning-utilities-0.4.2, lightning_cloud-0.5.12, pydantic-1.10.2, PyJWT-2.6.0, python-editor-1.0.4, pytorch-lightning-1.8.4, readchar-4.0.3, rich-12.5.1, s3fs-2022.7.1, sniffio-1.3.0, starlette-0.19.1, starsessions-1.3.0, torchmetrics-0.9.3, traitlets-5.2.0, websocket-client-1.4.2, wrapt-1.14.1"}, "PyTorch-Lightning/1.8.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "aiobotocore-2.3.4, aioitertools-0.11.0, anyio-3.6.1, arrow-1.2.3, blessed-1.19.1, botocore-1.24.21, commonmark-0.9.1, croniter-1.3.8, fastapi-0.79.1, fsspec-2022.7.1, inquirer-2.10.1, itsdangerous-2.1.2, jmespath-1.0.1, lightning-utilities-0.4.2, lightning_cloud-0.5.12, pydantic-1.10.2, PyJWT-2.6.0, python-editor-1.0.4, pytorch-lightning-1.8.4, readchar-4.0.3, rich-12.5.1, s3fs-2022.7.1, sniffio-1.3.0, starlette-0.19.1, starsessions-1.3.0, torchmetrics-0.9.3, traitlets-5.2.0, websocket-client-1.4.2, wrapt-1.14.1"}, "PyTorch-Lightning/2.1.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "aiobotocore-2.9.0, aioitertools-0.11.0, anyio-4.2.0, arrow-1.3.0, blessed-1.20.0, commonmark-0.9.1, croniter-2.0.1, editor-1.6.3, exceptiongroup-1.2.0, fastapi-0.108.0, fsspec-2023.12.2, h11-0.14.0, inquirer-3.2.0, itsdangerous-2.1.2, lightning-utilities-0.10.0, lightning_cloud-0.5.57, markdown-it-py-3.0.0, mdurl-0.1.2, PyJWT-2.8.0, python-editor-1.0.4, python_multipart-0.0.6, pytorch-lightning-2.1.2, readchar-4.0.5, rich-13.7.0, runs-1.2.0, s3fs-2023.12.2, sniffio-1.3.0, starlette-0.32.0.post1, starsessions-2.1.3, torchmetrics-1.2.1, traitlets-5.14.1, types-python-dateutil-2.8.19.14, uvicorn-0.25.0, websocket-client-1.7.0, wrapt-1.16.0, xmod-1.8.1"}, "PyTorch-Lightning/2.1.3-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "aiobotocore-2.9.1, aioitertools-0.11.0, anyio-4.2.0, arrow-1.3.0, blessed-1.20.0, boto3-1.33.13, botocore-1.33.13, commonmark-0.9.1, croniter-2.0.1, editor-1.6.5, exceptiongroup-1.2.0, fastapi-0.109.0, fsspec-2023.12.2, h11-0.14.0, inquirer-3.2.1, itsdangerous-2.1.2, jmespath-1.0.1, lightning-utilities-0.10.1, lightning_cloud-0.5.61, markdown-it-py-3.0.0, mdurl-0.1.2, PyJWT-2.8.0, python-editor-1.0.4, python_multipart-0.0.6, pytorch-lightning-2.1.3, readchar-4.0.5, rich-13.7.0, runs-1.2.0, s3fs-2023.12.2, s3transfer-0.8.2, sniffio-1.3.0, starlette-0.35.1, starsessions-2.1.2, torchmetrics-1.3.0.post0, traitlets-5.14.1, types-python-dateutil-2.8.19.20240106, uvicorn-0.26.0, websocket-client-1.7.0, wrapt-1.16.0, xmod-1.8.1"}, "PyTorch-Lightning/1.7.7-foss-2022a-CUDA-11.7.0": {"clusters": ["donphan"], "extensions": "fsspec-2022.8.2, pyDeprecate-0.3.2, pytorch-lightning-1.7.7, torchmetrics-0.9.3"}}, "description": "PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers.", "homepage": "https://pytorchlightning.ai"}, "PyTorch": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyTorch/1.7.1-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "PyTorch/1.8.1-fosscuda-2020b": {"clusters": ["accelgor"]}, "PyTorch/1.9.0-fosscuda-2020b": {"clusters": ["accelgor"]}, "PyTorch/1.10.0-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}, "PyTorch/1.10.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyTorch/1.10.0-fosscuda-2020b": {"clusters": ["accelgor"]}, "PyTorch/1.11.0-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}, "PyTorch/1.12.0-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "PyTorch/1.12.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyTorch/1.12.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"]}, "PyTorch/1.13.1-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "PyTorch/1.13.1-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyTorch/2.1.2-foss-2023a-CUDA-12.1.1": {"clusters": ["accelgor", "donphan", "joltik"]}, "PyTorch/2.1.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyTorch/1.3.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PyTorch/1.4.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PyTorch/1.6.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PyTorch/1.7.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyTorch/1.12.1-foss-2021b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyTorch/1.12.1-foss-2022a-CUDA-11.7.0": {"clusters": ["donphan", "joltik"]}}, "description": "Tensors and Dynamic neural networks in Python with strong GPU acceleration.PyTorch is a deep learning framework that puts Python first.", "homepage": "https://pytorch.org/"}, "PyVCF3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyVCF3/1.0.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "PyVCF3-1.0.3"}}, "description": "A VCFv4.0 and 4.1 parser for Python. The intent of this module is to mimic thecsv module in the Python stdlib, as opposed to more flexible serializationformats like JSON or YAML. vcf will attempt to parse the content of each recordbased on the data types specified in the meta-information lines -- specificallythe ##INFO and ##FORMAT lines. If these lines are missing or incomplete, itwill check against the reserved types mentioned in the spec. Failing that, itwill just return strings.PyVCF3 has been created because the Official PyVCF repository is no longermaintained and do not accept any pull requests. This fork is for python 3 onlyand has been published on pyPI as PyVCF3.", "homepage": "https://github.com/dridk/PyVCF3"}, "pyWannier90": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"pyWannier90/2021-12-07-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "pyWannier90/2021-12-07-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "A Wannier90 Python interface for VASP and PySCF", "homepage": "https://github.com/hungpham2017/pyWannier90"}, "PyWBGT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyWBGT/1.0.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cftime-1.6.2, coszenith-1.0.0, WBGT-1.0.0"}, "PyWBGT/1.0.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cftime-1.6.2, coszenith-1.0.0, WBGT-1.0.0"}}, "description": "Cython source code for estimating wet bulb globe temperature (WBGT) from datasets of standardmeterological measurements using models developed by Liljegren et al (2008)", "homepage": "https://github.com/QINQINKONG/PyWBGT"}, "PyYAML": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyYAML/5.3-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyYAML/5.3.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyYAML/5.4.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyYAML/5.4.1-GCCcore-11.2.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyYAML/5.4.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyYAML/6.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyYAML/6.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyYAML/6.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyYAML/5.1.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PyYAML is a YAML parser and emitter for the Python programming language.", "homepage": "https://github.com/yaml/pyyaml"}, "PyZMQ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyZMQ/24.0.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyZMQ/25.1.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python bindings for ZeroMQ", "homepage": "https://www.zeromq.org/bindings:python"}, "QCA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QCA/2.3.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Taking a hint from the similarly-named Java Cryptography Architecture, QCA aims to provide a straightforward and cross-platform crypto API, using Qt datatypes and conventions. QCA separates the API from the implementation, using plugins known as Providers. The advantage of this model is to allow applications to avoid linking to or explicitly depending on any particular cryptographic library. This allows one to easily change or upgrade crypto implementations without even needing to recompile the application! QCA should work everywhere Qt does, including Windows/Unix/MacOSX.", "homepage": "https://userbase.kde.org/QCA"}, "QCxMS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QCxMS/5.0.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "QCxMS is a quantum chemical based program to calculate electron ionization (EI) and collision induced dissociation (CID) mass spectra using Born-Oppenheimer Molecular Dynamics (BO-MD). It is the successor of the QCEIMS program, in which the EI part is exchanged to x to account for the greater general applicibility of the program.", "homepage": "https://xtb-docs.readthedocs.io/en/latest/qcxms_doc/qcxms.html"}, "QD": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"QD/2.3.17-NVHPC-21.2-20160110": {"clusters": ["accelgor", "donphan", "joltik"]}}, "description": "Quad Double computation package", "homepage": "https://github.com/scibuilder/QD"}, "QGIS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QGIS/3.28.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "QGIS is a user friendly Open Source Geographic Information System (GIS)", "homepage": "http://www.qgis.org/"}, "Qhull": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Qhull/2020.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qhull/2020.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qhull/2020.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qhull/2020.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qhull/2020.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.", "homepage": "http://www.qhull.org"}, "QIIME2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QIIME2/2022.11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "QIIME2/2023.5.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "altair-5.0.1, anyio-3.6.1, argcomplete-2.0.0, argon2-cffi-bindings-21.2.0, astor-0.8.1, atpublic-4.0, bibtexparser-1.4.0, biom-format-2.1.15, cached-property-1.5.2, contourpy-1.0.7, deblur-1.1.0, emperor-1.0.4, fastcluster-1.2.6, flufl-lock-8.0.1, formulaic-0.4.0, gneiss-0.4.6, ijson-3.2.3, interface_meta-1.3.0, iow-1.0.6, pylatexenc-2.10, pytz-deprecation-shim-0.1.0.post0, q2-alignment-2023.5.0, q2-composition-2023.5.0, q2-cutadapt-2023.5.1, q2-dada2-2023.5.0, q2-deblur-2023.5.0, q2-demux-2023.5.0, q2-diversity-2023.5.1, q2-diversity-lib-2023.5.0, q2-emperor-2023.5.0, q2-feature-classifier-2023.5.0, q2-feature-table-2023.5.0, q2-fragment-insertion-2023.5.0, q2-gneiss-2023.5.0, q2-longitudinal-2023.5.0, q2-metadata-2023.5.0, q2-phylogeny-2023.5.0, q2-quality-control-2023.5.0, q2-quality-filter-2023.5.0, q2-sample-classifier-2023.5.0, q2-taxa-2023.5.0, q2-types-2023.5.0, q2-vsearch-2023.5.0, q2cli-2023.5.1, q2templates-2023.5.0, QIIME2-2023.5.1, sniffio-1.3.0, toolz-0.12.0, tzdata-2022.7, tzlocal-5.0.1, unifrac-1.1.1, wrapt-1.14.1"}, "QIIME2/2020.8": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "QIIME2/2020.11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "QIIME2/2019.7": {"clusters": ["skitty"]}, "QIIME2/2021.8": {"clusters": ["skitty"]}}, "description": "QIIME is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.", "homepage": "http://qiime2.org/"}, "qnorm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"qnorm/0.8.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Fast-ish (and correct!) quantile normalization in Python", "homepage": "https://github.com/Maarten-vd-Sande/qnorm"}, "QScintilla": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QScintilla/2.11.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control", "homepage": "https://www.riverbankcomputing.com/software/qscintilla"}, "Qt5": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Qt5/5.13.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Qt5/5.14.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qt5/5.15.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qt5/5.15.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qt5/5.15.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qt5/5.15.7-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qt5/5.15.10-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qt5/5.14.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Qt is a comprehensive cross-platform C++ application framework.", "homepage": "https://qt.io/"}, "Qt5Webkit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Qt5Webkit/5.212.0-alpha4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Qt Port of WebKit. WebKit is an open source web browser engine.", "homepage": "https://github.com/qt/qtwebkit"}, "Qtconsole": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Qtconsole/5.3.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Qtconsole/5.4.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qtconsole/5.0.2-foss-2020b": {"clusters": ["doduo"]}, "Qtconsole/5.0.2-GCCcore-10.2.0": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}}, "description": "A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more.The Qtconsole is a very lightweight application that largely feels like a terminal, but provides a number of enhancements only possible in a GUI, such as inline figures, proper multiline editing with syntax highlighting, graphical calltips, and more.", "homepage": "https://jupyter.org/"}, "QtKeychain": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QtKeychain/0.13.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Platform-independent Qt API for storing passwords securely.", "homepage": "https://github.com/frankosterfeld/qtkeychain"}, "QtPy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QtPy/2.2.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "QtPy/2.3.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "QtPy/1.9.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. It provides support for PyQt5, PyQt4, PySide2 and PySide.", "homepage": "https://github.com/spyder-ide/qtpy"}, "QuantumESPRESSO": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"QuantumESPRESSO/7.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "QuantumESPRESSO/6.5-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).", "homepage": "https://www.quantum-espresso.org"}, "QUAST": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QUAST/5.2.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "QUAST-5.2.0"}, "QUAST/5.0.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "QUAST-5.0.2, simplejson-3.17.0"}, "QUAST/5.0.2-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "QUAST/5.0.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "QUAST-5.0.2, simplejson-3.17.2"}}, "description": "QUAST evaluates genome assemblies by computing various metrics.It works both with and without reference genomes. The tool accepts multipleassemblies, thus is suitable for comparison.", "homepage": "https://github.com/ablab/quast"}, "QuickFF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QuickFF/2.2.7-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "QuickFF/2.2.4-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "QuickFF is a Python package developed at the Center forMolecular Modeling (CMM) to quickly derive accurate force fields from ab initiocalculations.", "homepage": "https://molmod.github.io/QuickFF/"}, "QuPath": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"QuPath/0.5.0-GCCcore-12.3.0-Java-17": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "QuPath is open source software for bioimage analysis.QuPath is often used for digital pathology applications because it offers a powerful set of tools for working with whole slide images - but it can be applied to lots of other kinds of image as well.", "homepage": "https://qupath.github.io"}, "Qwt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Qwt/6.2.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Qwt/6.1.4-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Qwt/6.2.0-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Qwt library contains GUI Components and utility classes which are primarily useful for programs with a technical background.", "homepage": "https://qwt.sourceforge.io/"}, "R-bundle-Bioconductor": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "admisc-0.11, affxparser-1.62.0, affy-1.68.0, affycoretools-1.62.0, affyio-1.60.0, AgiMicroRna-2.40.0, agricolae-1.3-3, ALDEx2-1.22.0, ALL-1.32.0, annaffy-1.62.0, annotate-1.68.0, AnnotationDbi-1.52.0, AnnotationFilter-1.14.0, AnnotationForge-1.32.0, AnnotationHub-2.22.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.20.0, ash-1.0-15, ATACseqQC-1.14.4, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.22.0, batchelor-1.6.2, baySeq-2.24.0, beachmat-2.6.4, BH-1.75.0-0, Biobase-2.50.0, BiocFileCache-1.14.0, BiocGenerics-0.36.0, BiocManager-1.30.10, BiocNeighbors-1.8.2, BiocParallel-1.24.1, BiocSingular-1.6.0, BiocStyle-2.18.1, BiocVersion-3.12.0, biomaRt-2.46.3, biomformat-1.18.0, Biostrings-2.58.0, biovizBase-1.38.0, blme-1.0-5, bluster-1.0.0, bookdown-0.21, BSgenome-1.58.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.3, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.32.0, CAMERA-1.46.0, Category-2.56.0, ccdata-1.16.0, ccmap-1.16.0, CGHbase-1.50.0, ChIPpeakAnno-3.24.1, CNEr-1.26.0, coloc-3.2-1, colorRamps-2.3, ComplexHeatmap-2.6.2, ConsensusClusterPlus-1.54.0, conumee-1.24.0, crossmeta-1.16.1, cummeRbund-2.32.0, cytolib-2.2.1, CytoML-2.2.1, dada2-1.18.0, DeconRNASeq-1.32.0, DEGseq-1.44.0, DelayedArray-0.16.1, DelayedMatrixStats-1.12.3, derfinder-1.24.2, derfinderHelper-1.24.1, DESeq2-1.30.0, diffcyt-1.10.0, DirichletMultinomial-1.32.0, DNAcopy-1.64.0, dqrng-0.2.1, DRIMSeq-1.18.0, DropletUtils-1.10.3, dupRadar-1.20.0, DynDoc-1.68.0, EBImage-4.32.0, edgeR-3.32.1, egg-0.4.5, emmeans-1.5.4, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.14.0, estimability-1.3, ExperimentHub-1.16.0, extraDistr-1.9.1, fda-5.1.9, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.16.0, flowClust-3.28.0, flowCore-2.2.0, FlowSOM-1.22.0, FlowSorted.Blood.EPIC-1.8.0, FlowSorted.CordBloodCombined.450k-1.6.0, flowStats-4.2.0, flowViz-1.54.0, flowWorkspace-4.2.0, FRASER-1.2.1, gcrma-2.62.0, gdsfmt-1.26.1, GenABEL-1.8-0, GenABEL.data-1.0.0, genefilter-1.72.1, geneLenDataBase-1.26.0, geneplotter-1.68.0, GENESIS-2.20.1, GENIE3-1.12.0, GenomeInfoDb-1.26.2, GenomeInfoDbData-1.2.4, GenomicAlignments-1.26.0, GenomicFeatures-1.42.1, GenomicFiles-1.26.0, GenomicRanges-1.42.0, GenomicScores-2.2.0, genoset-1.45.1, GEOquery-2.58.0, ggbio-1.38.0, ggcyto-1.18.0, ggdendro-0.1.22, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.54.0, Glimma-2.0.0, GlobalAncova-4.8.0, globaltest-5.44.0, GO.db-3.12.1, goseq-1.42.0, GOstats-2.56.0, graph-1.68.0, GSEABase-1.52.1, gsmoothr-0.1.7, GSVA-1.38.2, Gviz-1.34.0, GWASExactHW-1.01, GWASTools-1.36.0, HDF5Array-1.18.1, hdrcde-3.4, heatmaply-1.2.1, hgu133plus2.db-3.2.3, HMMcopy-1.32.0, Homo.sapiens-1.3.1, IHW-1.18.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.32.0, impute-1.64.0, interactiveDisplayBase-1.28.0, IRanges-2.24.1, isva-1.9, KEGG.db-3.2.4, KEGGgraph-1.50.0, KEGGprofile-1.32.0, KEGGREST-1.30.1, LEA-3.2.0, limma-3.46.0, lpsymphony-1.18.0, lsa-0.73.2, lumi-2.42.0, marray-1.68.0, maSigPro-1.62.0, MassSpecWavelet-1.56.0, mathjaxr-1.2-0, MatrixGenerics-1.2.0, MEDIPS-1.42.0, metagenomeSeq-1.32.0, metaMA-3.1.2, metap-1.4, MethylSeekR-1.30.0, methylumi-2.36.0, Mfuzz-2.50.0, minfi-1.36.0, missMethyl-1.24.0, mixOmics-6.14.0, MLInterfaces-1.70.0, MotifDb-1.32.0, motifmatchr-1.12.0, motifStack-1.34.0, MsCoreUtils-1.2.0, MSnbase-2.16.1, MultiDataSet-1.18.1, multtest-2.46.0, muscat-1.4.0, mutoss-0.1-12, mzID-1.28.0, mzR-2.24.1, NADA-1.6-1.1, ncdf4-1.17, ncdfFlow-2.36.0, NOISeq-2.34.0, oligo-1.54.1, oligoClasses-1.52.0, ontologyIndex-2.7, openCyto-2.2.0, org.Hs.eg.db-3.12.0, org.Mm.eg.db-3.12.0, org.Rn.eg.db-3.12.0, OrganismDbi-1.32.0, OUTRIDER-1.8.0, pcaMethods-1.82.0, perm-1.0-0.0, PFAM.db-3.12.0, phyloseq-1.34.0, pmp-1.2.0, polyester-1.26.0, poweRlaw-0.70.6, preprocessCore-1.52.1, pRoloc-1.30.0, pRolocdata-1.28.0, pRolocGUI-2.0.0, ProtGenerics-1.22.0, PRROC-1.3.1, PSCBS-0.65.0, PureCN-1.20.0, qap-0.1-1, quantsmooth-1.56.0, qvalue-2.22.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.66.0, RcppAnnoy-0.0.18, RcppHNSW-0.3.0, RcppZiggurat-0.1.6, regioneR-1.22.0, Repitools-1.36.0, ReportingTools-2.30.0, ResidualMatrix-1.0.0, Rfast-2.0.1, rGADEM-2.38.0, Rgraphviz-2.34.0, rhdf5-2.34.0, rhdf5filters-1.2.0, Rhdf5lib-1.12.1, Rhtslib-1.22.0, Ringo-1.54.0, RNASeqPower-1.30.0, ROC-1.66.0, ropls-1.22.0, RProtoBufLib-2.2.0, Rsamtools-2.6.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.4.2, rsvd-1.0.3, rtracklayer-1.50.0, S4Vectors-0.28.1, samr-3.0, SC3-1.18.0, SCANVIS-1.4.0, scater-1.18.3, scattermore-0.7, scran-1.18.5, scrime-1.3.5, sctransform-0.3.2, scuttle-1.0.4, SeqArray-1.30.0, seqLogo-1.56.0, SeqVarTools-1.28.1, seriation-1.2-9, Seurat-4.0.0, SeuratObject-4.0.0, shinyBS-0.61, shinydashboardPlus-0.7.5, shinyFiles-0.9.0, shinyhelper-0.3.2, shinypanel-0.1.4, shinyWidgets-0.5.7, ShortRead-1.48.0, siggenes-1.64.0, Signac-1.1.1, SingleCellExperiment-1.12.0, SingleR-1.4.1, sitmo-2.0.1, SMVar-1.3.3, SNPRelate-1.24.0, snpStats-1.40.0, sparseMatrixStats-1.2.1, SPIA-2.42.0, SSPA-2.30.0, stageR-1.12.0, struct-1.2.0, structToolbox-1.2.0, SummarizedExperiment-1.20.0, sva-3.38.0, TFBSTools-1.28.0, TFMPvalue-0.0.8, tkWidgets-1.68.0, truncnorm-1.0-8, TSP-1.1-10, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.18.0, uwot-0.1.10, variancePartition-1.20.0, VariantAnnotation-1.36.0, venn-1.9, vsn-3.58.0, wateRmelon-1.34.0, widgetTools-1.68.0, Wrench-1.8.0, xcms-3.12.0, xgboost-1.3.2.1, XVector-0.30.0, zCompositions-1.3.4, zlibbioc-1.36.0"}, "R-bundle-Bioconductor/3.14-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "admisc-0.19, affxparser-1.66.0, affy-1.72.0, affycoretools-1.66.0, affyio-1.64.0, AgiMicroRna-2.44.0, agricolae-1.3-5, ALDEx2-1.26.0, ALL-1.36.0, annaffy-1.66.0, annotate-1.72.0, AnnotationDbi-1.56.1, AnnotationFilter-1.18.0, AnnotationForge-1.36.0, AnnotationHub-3.2.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.24.0, ash-1.0-15, ATACseqQC-1.18.0, AUCell-1.16.0, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.26.0, batchelor-1.10.0, baySeq-2.28.0, beachmat-2.10.0, Biobase-2.54.0, BiocFileCache-2.2.0, BiocGenerics-0.40.0, BiocIO-1.4.0, BiocManager-1.30.16, BiocNeighbors-1.12.0, BiocParallel-1.28.0, BiocSingular-1.10.0, BiocStyle-2.22.0, BiocVersion-3.14.0, biomaRt-2.50.0, biomformat-1.22.0, Biostrings-2.62.0, biovizBase-1.42.0, blme-1.0-5, bluster-1.4.0, bookdown-0.24, BSgenome-1.62.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.4, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.30.0, bumphunter-1.36.0, CAMERA-1.50.0, Category-2.60.0, ccdata-1.20.0, ccmap-1.20.0, CGHbase-1.54.0, ChIPpeakAnno-3.28.0, chromVAR-1.16.0, CNEr-1.30.0, coloc-5.1.0, colorRamps-2.3, ComplexHeatmap-2.10.0, ConsensusClusterPlus-1.58.0, conumee-1.28.0, crossmeta-1.20.0, cummeRbund-2.36.0, cytolib-2.6.0, CytoML-2.6.0, dada2-1.22.0, DeconRNASeq-1.36.0, DEGseq-1.48.0, DelayedArray-0.20.0, DelayedMatrixStats-1.16.0, derfinder-1.28.0, derfinderHelper-1.28.0, DESeq2-1.34.0, diffcyt-1.14.0, DirichletMultinomial-1.36.0, DNABarcodes-1.24.0, DNAcopy-1.68.0, docopt-0.7.1, dqrng-0.3.0, DRIMSeq-1.22.0, DropletUtils-1.14.0, DSS-2.42.0, dupRadar-1.24.0, DynDoc-1.72.0, EBImage-4.36.0, edgeR-3.36.0, egg-0.4.5, emmeans-1.7.0, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.18.0, estimability-1.3, ExperimentHub-2.2.0, extraDistr-1.9.1, fda-5.5.0, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.20.0, filelock-1.0.2, flowClust-3.32.0, flowCore-2.6.0, FlowSOM-2.2.0, FlowSorted.Blood.EPIC-1.12.1, FlowSorted.CordBloodCombined.450k-1.10.0, flowStats-4.6.0, flowViz-1.58.0, flowWorkspace-4.6.0, FRASER-1.6.0, fresh-0.2.0, gcrma-2.66.0, gdsfmt-1.30.0, GenABEL-1.8-0, GenABEL.data-1.0.0, genefilter-1.76.0, geneLenDataBase-1.30.0, geneplotter-1.72.0, GENESIS-2.24.0, GENIE3-1.16.0, GenomeInfoDb-1.30.0, GenomeInfoDbData-1.2.7, GenomicAlignments-1.30.0, GenomicFeatures-1.46.1, GenomicFiles-1.30.0, GenomicRanges-1.46.0, GenomicScores-2.6.0, GEOquery-2.62.0, ggbio-1.41.0, ggcyto-1.22.0, ggdendro-0.1.22, ggnewscale-0.4.5, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.58.0, Glimma-2.4.0, GlobalAncova-4.12.0, globaltest-5.48.0, GO.db-3.14.0, goseq-1.46.0, GOstats-2.60.0, graph-1.72.0, GSEABase-1.56.0, gsmoothr-0.1.7, GSVA-1.42.0, Gviz-1.38.0, GWASExactHW-1.01, GWASTools-1.40.0, HDF5Array-1.22.0, hdrcde-3.4, heatmaply-1.3.0, hgu133plus2.db-3.13.0, HMMcopy-1.36.0, Homo.sapiens-1.3.1, IHW-1.22.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.36.0, impute-1.68.0, InteractionSet-1.22.0, interactiveDisplayBase-1.32.0, IRanges-2.28.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.54.0, KEGGREST-1.34.0, LEA-3.6.0, limma-3.50.0, lpsymphony-1.22.0, lsa-0.73.2, lumi-2.46.0, M3Drop-1.20.0, marray-1.72.0, maSigPro-1.66.0, MassSpecWavelet-1.60.0, mathjaxr-1.4-0, MatrixGenerics-1.6.0, MEDIPS-1.46.0, metagenomeSeq-1.36.0, metaMA-3.1.2, metap-1.5, metapod-1.2.0, MethylSeekR-1.34.0, methylumi-2.39.0, Mfuzz-2.54.0, minfi-1.40.0, missMethyl-1.28.0, mixOmics-6.17.26, mixsqp-0.3-43, MLInterfaces-1.74.0, MotifDb-1.36.0, motifmatchr-1.16.0, motifStack-1.38.0, MsCoreUtils-1.6.0, MsFeatures-1.2.0, MSnbase-2.20.0, MultiDataSet-1.22.0, multtest-2.50.0, muscat-1.8.0, mutoss-0.1-12, mzID-1.32.0, mzR-2.28.0, NADA-1.6-1.1, ncdfFlow-2.40.0, NMF-0.23.0, NOISeq-2.38.0, oligo-1.58.0, oligoClasses-1.56.0, ontologyIndex-2.7, openCyto-2.6.0, org.Hs.eg.db-3.14.0, org.Mm.eg.db-3.14.0, org.Rn.eg.db-3.14.0, OrganismDbi-1.36.0, OUTRIDER-1.12.0, pathview-1.34.0, pcaMethods-1.86.0, perm-1.0-0.2, PFAM.db-3.14.0, phyloseq-1.38.0, pmp-1.6.0, polyester-1.30.0, poweRlaw-0.70.6, preprocessCore-1.56.0, pRoloc-1.34.0, pRolocdata-1.32.0, pRolocGUI-2.4.0, ProtGenerics-1.26.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.0.0, qap-0.1-1, qlcMatrix-0.9.7, quantsmooth-1.60.0, qvalue-2.26.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.70.0, RcisTarget-1.14.0, RcppAnnoy-0.0.19, RcppHNSW-0.3.0, RcppZiggurat-0.1.6, regioneR-1.26.0, reldist-1.6-6, Repitools-1.40.0, ReportingTools-2.34.0, ResidualMatrix-1.4.0, restfulr-0.0.13, Rfast-2.0.3, rGADEM-2.42.0, Rgraphviz-2.38.0, rhdf5-2.38.0, rhdf5filters-1.6.0, Rhdf5lib-1.16.0, Rhtslib-1.26.0, Ringo-1.58.0, RNASeqPower-1.34.0, ROC-1.70.0, rols-2.22.0, ropls-1.26.0, RProtoBufLib-2.6.0, Rsamtools-2.10.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.8.0, rsvd-1.0.5, rtracklayer-1.54.0, S4Vectors-0.32.0, samr-3.0, SC3-1.22.0, ScaledMatrix-1.2.0, SCANVIS-1.7.0, scater-1.22.0, scattermore-0.7, scran-1.22.0, scrime-1.3.5, sctransform-0.3.2, scuttle-1.4.0, SeqArray-1.34.0, seqLogo-1.60.0, SeqVarTools-1.32.0, seriation-1.3.1, Seurat-4.0.5, SeuratObject-4.0.2, shinyBS-0.61, shinydashboardPlus-2.0.3, shinyFiles-0.9.0, shinyhelper-0.3.2, shinypanel-0.1.4, shinyWidgets-0.6.2, ShortRead-1.52.0, siggenes-1.68.0, Signac-1.4.0, SingleCellExperiment-1.16.0, SingleR-1.8.0, sitmo-2.0.2, SMVar-1.3.3, SNPRelate-1.28.0, snpStats-1.44.0, sparseMatrixStats-1.6.0, sparsesvd-0.2, SPIA-2.46.0, stageR-1.16.0, struct-1.6.0, structToolbox-1.6.0, SummarizedExperiment-1.24.0, susieR-0.11.42, sva-3.42.0, TFBSTools-1.32.0, TFMPvalue-0.0.8, tkWidgets-1.72.0, truncnorm-1.0-8, TSP-1.1-11, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.22.0, uwot-0.1.10, variancePartition-1.24.0, VariantAnnotation-1.40.0, venn-1.10, vsn-3.62.0, waiter-0.2.4, wateRmelon-2.0.0, WGCNA-1.70-3, widgetTools-1.72.0, Wrench-1.12.0, xcms-3.16.0, XVector-0.34.0, zCompositions-1.3.4, zlibbioc-1.40.0"}, "R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "admisc-0.27, affxparser-1.68.1, affy-1.74.0, affycoretools-1.68.0, affyio-1.66.0, AgiMicroRna-2.46.0, agricolae-1.3-5, ALDEx2-1.28.0, ALL-1.38.0, annaffy-1.68.0, annotate-1.74.0, AnnotationDbi-1.58.0, AnnotationFilter-1.20.0, AnnotationForge-1.38.0, AnnotationHub-3.4.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.26.0, ash-1.0-15, ATACseqQC-1.20.2, AUCell-1.18.0, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.28.0, batchelor-1.12.0, baySeq-2.30.0, beachmat-2.12.0, Biobase-2.56.0, BiocFileCache-2.4.0, BiocGenerics-0.42.0, BiocIO-1.6.0, BiocManager-1.30.17, BiocNeighbors-1.14.0, BiocParallel-1.30.0, BiocSingular-1.12.0, BiocStyle-2.24.0, BiocVersion-3.15.2, biomaRt-2.52.0, biomformat-1.24.0, Biostrings-2.64.0, biovizBase-1.44.0, blme-1.0-5, bluster-1.6.0, bookdown-0.26, BSgenome-1.64.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.4, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.32.0, bumphunter-1.38.0, CAGEr-2.2.0, CAMERA-1.52.0, Category-2.62.0, ccdata-1.22.0, ccmap-1.22.0, CGHbase-1.56.0, CGHcall-2.58.0, ChIPpeakAnno-3.30.0, chromVAR-1.18.0, CNEr-1.32.0, coloc-5.1.0, colorRamps-2.3.1, ComplexHeatmap-2.12.0, ConsensusClusterPlus-1.60.0, conumee-1.30.0, crossmeta-1.22.0, cummeRbund-2.38.0, cytolib-2.8.0, CytoML-2.8.0, dada2-1.24.0, DeconRNASeq-1.38.0, DEGseq-1.50.0, DelayedArray-0.22.0, DelayedMatrixStats-1.18.0, densEstBayes-1.0-2.1, derfinder-1.30.0, derfinderHelper-1.30.0, DESeq2-1.36.0, diffcyt-1.16.0, DirichletMultinomial-1.38.0, DNABarcodes-1.26.0, DNAcopy-1.70.0, docopt-0.7.1, dqrng-0.3.0, DRIMSeq-1.24.0, DropletUtils-1.16.0, DSS-2.44.0, dupRadar-1.26.0, DynDoc-1.74.0, EBImage-4.38.0, edgeR-3.38.0, egg-0.4.5, emmeans-1.7.3, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.20.1, estimability-1.3, ExperimentHub-2.4.0, extraDistr-1.9.1, fda-6.0.3, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.22.0, filelock-1.0.2, flowClust-3.34.0, flowCore-2.8.0, FlowSOM-2.4.0, FlowSorted.Blood.EPIC-2.0.0, FlowSorted.CordBloodCombined.450k-1.12.0, flowStats-4.8.0, flowViz-1.60.0, flowWorkspace-4.8.0, FRASER-1.8.0, fresh-0.2.0, gcrma-2.68.0, gdsfmt-1.32.0, genefilter-1.78.0, geneLenDataBase-1.32.0, geneplotter-1.74.0, GENESIS-2.26.0, GENIE3-1.18.0, GenomeInfoDb-1.32.1, GenomeInfoDbData-1.2.8, GenomicAlignments-1.32.0, GenomicFeatures-1.48.0, GenomicFiles-1.32.0, GenomicRanges-1.48.0, GenomicScores-2.8.0, GEOquery-2.64.0, ggbio-1.44.0, ggcyto-1.24.0, ggdendro-0.1.23, ggnewscale-0.4.7, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.60.0, Glimma-2.6.0, GlobalAncova-4.14.0, globaltest-5.50.0, GO.db-3.15.0, goseq-1.48.0, GOstats-2.62.0, graph-1.74.0, GSEABase-1.58.0, gsmoothr-0.1.7, GSVA-1.44.0, Gviz-1.40.0, GWASExactHW-1.01, GWASTools-1.42.0, HDF5Array-1.24.0, hdrcde-3.4, heatmaply-1.3.0, hgu133plus2.db-3.13.0, HiCcompare-1.18.0, HMMcopy-1.38.0, Homo.sapiens-1.3.1, IHW-1.24.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.38.0, impute-1.70.0, InteractionSet-1.24.0, interactiveDisplayBase-1.34.0, IRanges-2.30.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.56.0, KEGGREST-1.36.0, LEA-3.8.0, limma-3.52.0, lpsymphony-1.24.0, lsa-0.73.2, lumi-2.48.0, M3Drop-1.22.0, marray-1.74.0, maSigPro-1.68.0, MassSpecWavelet-1.62.0, MatrixGenerics-1.8.0, MEDIPS-1.48.0, metagenomeSeq-1.38.0, metaMA-3.1.3, metap-1.8, metapod-1.4.0, MethylSeekR-1.36.0, methylumi-2.42.0, Mfuzz-2.56.0, minfi-1.42.0, missMethyl-1.30.0, mixOmics-6.20.0, mixsqp-0.3-43, MLInterfaces-1.76.0, MotifDb-1.38.0, motifmatchr-1.18.0, motifStack-1.40.0, MsCoreUtils-1.8.0, MsFeatures-1.4.0, MSnbase-2.22.0, MultiAssayExperiment-1.22.0, MultiDataSet-1.24.0, multtest-2.52.0, muscat-1.10.0, mutoss-0.1-12, mzID-1.34.0, mzR-2.30.0, NADA-1.6-1.1, ncdfFlow-2.42.0, NMF-0.24.0, NOISeq-2.40.0, oligo-1.60.0, oligoClasses-1.58.0, ontologyIndex-2.7, openCyto-2.8.0, org.Hs.eg.db-3.15.0, org.Mm.eg.db-3.15.0, org.Rn.eg.db-3.15.0, OrganismDbi-1.38.0, OUTRIDER-1.14.0, pathview-1.36.0, pcaMethods-1.88.0, perm-1.0-0.2, PFAM.db-3.15.0, phyloseq-1.40.0, pmp-1.8.0, polyester-1.32.0, poweRlaw-0.70.6, preprocessCore-1.58.0, pRoloc-1.36.0, pRolocdata-1.34.0, pRolocGUI-2.6.0, ProtGenerics-1.28.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.2.0, qap-0.1-1, QDNAseq-1.32.0, qlcMatrix-0.9.7, qqconf-1.2.3, quantsmooth-1.62.0, qvalue-2.28.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.72.0, RcisTarget-1.16.0, RcppAnnoy-0.0.19, RcppHNSW-0.3.0, RcppML-0.3.7, RcppZiggurat-0.1.6, regioneR-1.28.0, reldist-1.7-0, Repitools-1.42.0, ReportingTools-2.36.0, ResidualMatrix-1.6.0, restfulr-0.0.13, Rfast-2.0.6, rGADEM-2.44.0, Rgraphviz-2.40.0, rhdf5-2.40.0, rhdf5filters-1.8.0, Rhdf5lib-1.18.0, RhpcBLASctl-0.21-247.1, Rhtslib-1.28.0, Ringo-1.60.0, RNASeqPower-1.36.0, ROC-1.72.0, rols-2.24.0, ROntoTools-2.24.0, ropls-1.28.0, RProtoBufLib-2.8.0, Rsamtools-2.12.0, Rsubread-2.10.0, rsvd-1.0.5, rtracklayer-1.56.0, S4Vectors-0.34.0, samr-3.0, SC3-1.24.0, ScaledMatrix-1.4.0, SCANVIS-1.10.0, scater-1.24.0, scattermore-0.8, scDblFinder-1.10.0, scran-1.24.0, scrime-1.3.5, scuttle-1.6.0, SeqArray-1.36.0, seqLogo-1.62.0, SeqVarTools-1.34.0, seriation-1.3.5, Seurat-4.1.1, SeuratObject-4.1.0, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.1, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.6.4, ShortRead-1.54.0, siggenes-1.70.0, Signac-1.6.0, SingleCellExperiment-1.18.0, SingleR-1.10.0, sitmo-2.0.2, SMVar-1.3.4, SNPRelate-1.30.0, snpStats-1.46.0, sparseMatrixStats-1.8.0, sparsesvd-0.2, SPIA-2.48.0, SPOTlight-1.0.0, stageR-1.18.0, struct-1.8.0, structToolbox-1.8.0, SummarizedExperiment-1.26.1, susieR-0.11.92, sva-3.44.0, TFBSTools-1.34.0, TFMPvalue-0.0.8, tkWidgets-1.74.0, TSP-1.2-0, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.24.0, uwot-0.1.11, variancePartition-1.26.0, VariantAnnotation-1.42.0, venn-1.10, vsn-3.64.0, waiter-0.2.5, wateRmelon-2.2.0, WGCNA-1.71, widgetTools-1.74.0, Wrench-1.14.0, xcms-3.18.0, XVector-0.36.0, zCompositions-1.4.0-1, zlibbioc-1.42.0"}, "R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "affxparser-1.68.1, affy-1.74.0, affycoretools-1.68.1, affyio-1.66.0, AgiMicroRna-2.46.0, agricolae-1.3-5, ALDEx2-1.28.1, ALL-1.38.0, annaffy-1.68.0, annotate-1.74.0, AnnotationDbi-1.58.0, AnnotationFilter-1.20.0, AnnotationForge-1.38.0, AnnotationHub-3.4.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.26.0, ash-1.0-15, ATACseqQC-1.20.2, AUCell-1.18.1, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.28.0, basilisk-1.8.1, basilisk.utils-1.8.0, batchelor-1.12.3, baySeq-2.30.0, beachmat-2.12.0, Biobase-2.56.0, BiocFileCache-2.4.0, BiocGenerics-0.42.0, BiocIO-1.6.0, BiocManager-1.30.18, BiocNeighbors-1.14.0, BiocParallel-1.30.3, BiocSingular-1.12.0, BiocStyle-2.24.0, BiocVersion-3.15.2, biomaRt-2.52.0, biomformat-1.24.0, Biostrings-2.64.0, biovizBase-1.44.0, blme-1.0-5, bluster-1.6.0, bookdown-0.27, BSgenome-1.64.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.4, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.32.0, bumphunter-1.38.0, CAGEr-2.2.0, CAMERA-1.52.0, Category-2.62.0, ccdata-1.22.0, ccmap-1.22.0, CGHbase-1.56.0, CGHcall-2.58.0, ChIPpeakAnno-3.30.1, chromVAR-1.18.0, clusterProfiler-4.4.4, CNEr-1.32.0, coloc-5.1.0.1, colorRamps-2.3.1, ComplexHeatmap-2.12.0, ConsensusClusterPlus-1.60.0, conumee-1.30.0, crossmeta-1.22.1, cummeRbund-2.38.0, cytolib-2.8.0, CytoML-2.8.0, dada2-1.24.0, ddPCRclust-1.16.0, DeconRNASeq-1.38.0, DEGseq-1.50.0, DelayedArray-0.22.0, DelayedMatrixStats-1.18.0, densEstBayes-1.0-2.1, derfinder-1.30.0, derfinderHelper-1.30.0, DESeq2-1.36.0, diffcyt-1.16.0, dir.expiry-1.4.0, DirichletMultinomial-1.38.0, DNABarcodes-1.26.0, DNAcopy-1.70.0, DO.db-2.9, docopt-0.7.1, DOSE-3.22.1, dqrng-0.3.0, DRIMSeq-1.24.0, DropletUtils-1.16.0, DSS-2.44.0, dupRadar-1.26.1, DynDoc-1.74.0, EBImage-4.38.0, edgeR-3.38.1, egg-0.4.5, emmeans-1.7.5, enrichplot-1.16.2, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.20.2, estimability-1.4, ExperimentHub-2.4.0, extraDistr-1.9.1, fda-6.0.5, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, feature-1.2.15, fgsea-1.22.0, filelock-1.0.2, flowAI-1.26.0, flowClean-1.34.1, flowClust-3.34.0, flowCore-2.8.0, flowDensity-1.30.0, flowFP-1.54.0, flowMerge-2.44.0, flowPeaks-1.42.0, FlowSOM-2.4.0, FlowSorted.Blood.EPIC-2.0.0, FlowSorted.CordBloodCombined.450k-1.12.0, flowStats-4.8.0, flowViz-1.60.2, flowWorkspace-4.8.0, FRASER-1.8.1, fresh-0.2.0, gcrma-2.68.0, gdsfmt-1.32.0, genefilter-1.78.0, geneLenDataBase-1.32.0, geneplotter-1.74.0, GENESIS-2.26.0, GENIE3-1.18.0, GenomeInfoDb-1.32.2, GenomeInfoDbData-1.2.8, GenomicAlignments-1.32.0, GenomicFeatures-1.48.3, GenomicFiles-1.32.1, GenomicRanges-1.48.0, GenomicScores-2.8.2, GEOmap-2.5-0, GEOquery-2.64.2, ggbio-1.44.1, ggcyto-1.24.1, ggdendro-0.1.23, ggnewscale-0.4.7, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, ggtree-3.4.4, GLAD-2.60.0, Glimma-2.6.0, GlobalAncova-4.14.0, globaltest-5.50.0, GO.db-3.15.0, GOSemSim-2.22.0, goseq-1.48.0, GOstats-2.62.0, graph-1.74.0, graphite-1.42.0, GSEABase-1.58.0, gsmoothr-0.1.7, GSVA-1.44.2, Gviz-1.40.1, GWASExactHW-1.01, GWASTools-1.42.0, HDF5Array-1.24.1, hdrcde-3.4, heatmaply-1.3.0, hgu133plus2.db-3.13.0, HiCBricks-1.14.0, HiCcompare-1.18.0, HMMcopy-1.38.0, Homo.sapiens-1.3.1, IHW-1.24.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.38.0, impute-1.70.0, InteractionSet-1.24.0, interactiveDisplayBase-1.34.0, IRanges-2.30.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.56.0, KEGGREST-1.36.2, LEA-3.8.0, limma-3.52.2, lpsymphony-1.24.0, lsa-0.73.3, lumi-2.48.0, M3Drop-1.22.0, marray-1.74.0, maSigPro-1.68.0, MassSpecWavelet-1.62.0, MatrixGenerics-1.8.1, MBA-0.1-0, MEDIPS-1.48.0, metagenomeSeq-1.38.0, metaMA-3.1.3, metap-1.8, metapod-1.4.0, MethylSeekR-1.36.0, methylumi-2.42.0, Mfuzz-2.56.0, minfi-1.42.0, missMethyl-1.30.0, mixOmics-6.20.0, mixsqp-0.3-43, MLInterfaces-1.76.0, MotifDb-1.38.0, motifmatchr-1.18.0, motifStack-1.40.0, MsCoreUtils-1.8.0, MsFeatures-1.4.0, MSnbase-2.22.0, MultiAssayExperiment-1.22.0, MultiDataSet-1.24.0, multtest-2.52.0, muscat-1.10.1, mutoss-0.1-12, mzID-1.34.0, mzR-2.30.0, NADA-1.6-1.1, ncdfFlow-2.42.1, NMF-0.24.0, NOISeq-2.40.0, numbat-1.1.0, oligo-1.60.0, oligoClasses-1.58.0, ontologyIndex-2.7, openCyto-2.8.2, org.Hs.eg.db-3.15.0, org.Mm.eg.db-3.15.0, org.Rn.eg.db-3.15.0, OrganismDbi-1.38.1, OUTRIDER-1.14.0, pathview-1.36.0, pcaMethods-1.88.0, perm-1.0-0.2, PFAM.db-3.15.0, phyloseq-1.40.0, pmp-1.8.0, polyester-1.32.0, poweRlaw-0.70.6, preprocessCore-1.58.0, pRoloc-1.36.0, pRolocdata-1.34.0, pRolocGUI-2.6.0, ProtGenerics-1.28.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.2.0, qap-0.1-2, QDNAseq-1.32.0, qlcMatrix-0.9.7, qqconf-1.2.3, quantsmooth-1.62.0, qvalue-2.28.0, R.devices-2.17.1, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.72.0, RcisTarget-1.16.0, RcppAnnoy-0.0.19, RcppHNSW-0.3.0, RcppML-0.3.7, RcppZiggurat-0.1.6, reactome.db-1.81.0, ReactomePA-1.40.0, regioneR-1.28.0, reldist-1.7-1, Repitools-1.42.0, ReportingTools-2.36.0, ResidualMatrix-1.6.0, restfulr-0.0.15, Rfast-2.0.6, RFOC-3.4-6, rGADEM-2.44.0, Rgraphviz-2.40.0, rhdf5-2.40.0, rhdf5filters-1.8.0, Rhdf5lib-1.18.2, Rhtslib-1.28.0, Ringo-1.60.0, RNASeqPower-1.36.0, ROC-1.72.0, rols-2.24.2, ROntoTools-2.24.0, ropls-1.28.2, RPMG-2.2-3, RProtoBufLib-2.8.0, Rsamtools-2.12.0, RSEIS-4.1-4, Rsubread-2.10.4, rsvd-1.0.5, rtracklayer-1.56.1, Rwave-2.6-5, S4Vectors-0.34.0, samr-3.0, SamSPECTRAL-1.50.0, SC3-1.24.0, ScaledMatrix-1.4.0, SCANVIS-1.10.0, scater-1.24.0, scattermore-0.8, scDblFinder-1.10.0, scistreer-1.0.1, scran-1.24.0, scrime-1.3.5, scuttle-1.6.2, SeqArray-1.36.2, seqLogo-1.62.0, SeqVarTools-1.34.0, seriation-1.3.5, Seurat-4.1.1, SeuratObject-4.1.0, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.2, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.7.0, ShortRead-1.54.0, siggenes-1.70.0, Signac-1.7.0, simplifyEnrichment-1.6.1, SingleCellExperiment-1.18.0, SingleR-1.10.0, sitmo-2.0.2, SMVar-1.3.4, SNPRelate-1.30.1, snpStats-1.46.0, sparseMatrixStats-1.8.0, sparsesvd-0.2, SpatialExperiment-1.6.1, SPIA-2.48.0, splancs-2.01-43, SPOTlight-1.0.0, stageR-1.18.0, struct-1.8.0, structToolbox-1.8.0, SummarizedExperiment-1.26.1, susieR-0.12.16, sva-3.44.0, TFBSTools-1.34.0, TFMPvalue-0.0.8, tkWidgets-1.74.0, treeio-1.20.2, TSP-1.2-0, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.24.0, uwot-0.1.11, variancePartition-1.26.0, VariantAnnotation-1.42.1, venn-1.11, vsn-3.64.0, waiter-0.2.5, wateRmelon-2.2.0, WGCNA-1.71, widgetTools-1.74.0, Wrench-1.14.0, xcms-3.18.0, XVector-0.36.0, zCompositions-1.4.0-1, zellkonverter-1.6.5, zlibbioc-1.42.0"}, "R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "affxparser-1.70.0, affy-1.76.0, affycoretools-1.70.0, affyio-1.68.0, AgiMicroRna-2.48.0, agricolae-1.3-5, ALDEx2-1.30.0, ALL-1.40.0, ANCOMBC-2.0.2, annaffy-1.70.0, annotate-1.76.0, AnnotationDbi-1.60.2, AnnotationFilter-1.22.0, AnnotationForge-1.40.1, AnnotationHub-3.6.0, anytime-0.3.9, aroma.affymetrix-3.2.1, aroma.apd-0.6.1, aroma.core-3.3.0, aroma.light-3.28.0, ash-1.0-15, ATACseqQC-1.22.0, AUCell-1.20.2, aws.s3-0.3.21, aws.signature-0.6.0, babelgene-22.9, ballgown-2.30.0, basilisk-1.10.2, basilisk.utils-1.10.0, batchelor-1.14.1, baySeq-2.31.0, beachmat-2.14.0, Biobase-2.58.0, BiocBaseUtils-1.0.0, BiocFileCache-2.6.1, BiocGenerics-0.44.0, BiocIO-1.8.0, BiocManager-1.30.20, BiocNeighbors-1.16.0, BiocParallel-1.32.5, BiocSingular-1.14.0, BiocStyle-2.26.0, BiocVersion-3.16.0, biomaRt-2.54.0, biomformat-1.26.0, Biostrings-2.66.0, biovizBase-1.46.0, blme-1.0-5, bluster-1.8.0, bookdown-0.33, BSgenome-1.66.3, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.5, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.34.0, bumphunter-1.40.0, ca-0.71.1, CAGEr-2.4.0, CAMERA-1.54.0, Category-2.64.0, ccdata-1.24.0, ccmap-1.24.0, CGHbase-1.58.0, CGHcall-2.60.0, ChIPpeakAnno-3.32.0, chromVAR-1.20.2, clusterProfiler-4.6.2, CNEr-1.34.0, coloc-5.1.0.1, colorRamps-2.3.1, ComplexHeatmap-2.14.0, ConsensusClusterPlus-1.62.0, conumee-1.32.0, crossmeta-1.24.0, cummeRbund-2.40.0, cytolib-2.10.1, CytoML-2.10.0, dada2-1.26.0, ddPCRclust-1.18.0, DECIPHER-2.26.0, DeconRNASeq-1.40.0, decontam-1.18.0, decoupleR-2.4.0, DEGseq-1.52.0, DelayedArray-0.24.0, DelayedMatrixStats-1.20.0, densEstBayes-1.0-2.1, derfinder-1.32.0, derfinderHelper-1.32.0, DESeq2-1.38.3, diffcyt-1.18.0, dir.expiry-1.6.0, DirichletMultinomial-1.40.0, DNABarcodes-1.28.0, DNAcopy-1.72.3, DO.db-2.9, docopt-0.7.1, DOSE-3.24.2, dqrng-0.3.0, DRIMSeq-1.26.0, DropletUtils-1.18.1, DSS-2.46.0, dupRadar-1.28.0, DynDoc-1.76.0, EBImage-4.40.0, edgeR-3.40.2, egg-0.4.5, emmeans-1.8.5, enrichplot-1.18.3, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.22.0, escape-1.8.0, estimability-1.4.1, ExperimentHub-2.6.0, extraDistr-1.9.1, fda-6.0.5, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, feature-1.2.15, fgsea-1.24.0, filelock-1.0.2, flowAI-1.28.0, flowClean-1.36.0, flowClust-3.36.0, flowCore-2.10.0, flowDensity-1.32.0, flowFP-1.56.3, flowMerge-2.46.0, flowPeaks-1.44.0, FlowSOM-2.6.0, FlowSorted.Blood.EPIC-2.2.0, FlowSorted.CordBloodCombined.450k-1.14.0, flowStats-4.10.0, flowViz-1.62.0, flowWorkspace-4.10.1, FRASER-1.10.2, fresh-0.2.0, gcrma-2.70.0, gdsfmt-1.34.0, genefilter-1.80.3, geneLenDataBase-1.34.0, geneplotter-1.76.0, GENESIS-2.28.0, GENIE3-1.20.0, GenomeInfoDb-1.34.9, GenomeInfoDbData-1.2.9, GenomicAlignments-1.34.1, GenomicFeatures-1.50.4, GenomicFiles-1.34.0, GenomicRanges-1.50.2, GenomicScores-2.10.0, GEOmap-2.5-0, GEOquery-2.66.0, ggbio-1.46.0, ggcyto-1.26.4, ggdendro-0.1.23, ggnewscale-0.4.8, ggpointdensity-0.1.0, ggrastr-1.0.1, ggseqlogo-0.1, ggthemes-4.2.4, ggtree-3.6.2, GLAD-2.62.0, Glimma-2.8.0, GlobalAncova-4.16.0, globaltest-5.52.0, GO.db-3.16.0, GOSemSim-2.24.0, goseq-1.50.0, GOstats-2.64.0, graph-1.76.0, graphite-1.44.0, GSEABase-1.60.0, gsmoothr-0.1.7, gson-0.1.0, GSVA-1.46.0, Gviz-1.42.1, GWASExactHW-1.01, GWASTools-1.44.0, HDF5Array-1.26.0, HDO.db-0.99.1, hdrcde-3.4, heatmaply-1.4.2, hgu133plus2.db-3.13.0, HiCBricks-1.16.0, HiCcompare-1.20.0, HMMcopy-1.40.0, Homo.sapiens-1.3.1, IHW-1.26.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.40.0, impute-1.72.3, InteractionSet-1.26.1, interactiveDisplayBase-1.36.0, intervals-0.15.4, IRanges-2.32.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.58.3, KEGGREST-1.38.0, LEA-3.10.2, limma-3.54.2, lpsymphony-1.26.3, lsa-0.73.3, lumi-2.50.0, M3Drop-1.24.0, marray-1.76.0, maSigPro-1.70.0, MassSpecWavelet-1.64.1, MatrixGenerics-1.10.0, MBA-0.1-0, MEDIPS-1.50.0, metagenomeSeq-1.40.0, metaMA-3.1.3, metap-1.8, metapod-1.6.0, MethylSeekR-1.38.0, methylumi-2.44.0, Mfuzz-2.58.0, mia-1.6.0, minfi-1.44.0, missMethyl-1.32.0, mixOmics-6.22.0, mixsqp-0.3-48, MLInterfaces-1.78.0, MotifDb-1.40.0, motifmatchr-1.20.0, motifStack-1.42.0, MsCoreUtils-1.10.0, MsFeatures-1.6.0, msigdbr-7.5.1, MSnbase-2.24.2, MultiAssayExperiment-1.24.0, MultiDataSet-1.26.0, multtest-2.54.0, muscat-1.12.1, mutoss-0.1-13, mzID-1.36.0, mzR-2.32.0, NADA-1.6-1.1, ncdfFlow-2.44.0, NMF-0.25, NOISeq-2.42.0, numbat-1.2.2, oligo-1.62.2, oligoClasses-1.60.0, ontologyIndex-2.10, oompaBase-3.2.9, oompaData-3.1.3, openCyto-2.10.1, org.Hs.eg.db-3.16.0, org.Mm.eg.db-3.16.0, org.Rn.eg.db-3.16.0, OrganismDbi-1.40.0, OUTRIDER-1.16.3, pathview-1.38.0, pcaMethods-1.90.0, perm-1.0-0.2, PFAM.db-3.16.0, phyloseq-1.42.0, pmp-1.10.0, polyester-1.34.0, poweRlaw-0.70.6, preprocessCore-1.60.2, pRoloc-1.38.2, pRolocdata-1.36.0, pRolocGUI-2.8.0, ProtGenerics-1.30.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.4.0, qap-0.1-2, QDNAseq-1.34.0, qlcMatrix-0.9.7, qqconf-1.3.1, quantsmooth-1.64.0, qvalue-2.30.0, R.devices-2.17.1, R.filesets-2.15.0, R.huge-0.9.0, rainbow-3.7, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.74.0, RcisTarget-1.18.2, RcppAnnoy-0.0.20, RcppHNSW-0.4.1, RcppML-0.3.7, RcppZiggurat-0.1.6, reactome.db-1.82.0, ReactomePA-1.42.0, regioneR-1.30.0, reldist-1.7-2, remaCor-0.0.11, Repitools-1.44.0, ReportingTools-2.38.0, ResidualMatrix-1.8.0, restfulr-0.0.15, Rfast-2.0.7, RFOC-3.4-6, rGADEM-2.46.0, Rgraphviz-2.42.0, rhdf5-2.42.0, rhdf5filters-1.10.0, Rhdf5lib-1.20.0, Rhtslib-2.0.0, Ringo-1.62.0, RNASeqPower-1.38.0, RnBeads-2.16.0, RnBeads.hg19-1.30.0, RnBeads.hg38-1.30.0, RnBeads.mm10-2.6.0, RnBeads.mm9-1.30.0, RnBeads.rn5-1.30.0, ROC-1.74.0, rols-2.26.0, ROntoTools-2.26.0, ropls-1.30.0, RPMG-2.2-3, RProtoBufLib-2.10.0, Rsamtools-2.14.0, RSEIS-4.1-4, Rsubread-2.12.3, rsvd-1.0.5, rtracklayer-1.58.0, Rwave-2.6-5, S4Vectors-0.36.2, samr-3.0, SamSPECTRAL-1.52.0, SC3-1.26.2, ScaledMatrix-1.6.0, SCANVIS-1.12.0, scater-1.26.1, scattermore-0.8, scDblFinder-1.12.0, scistreer-1.1.0, scran-1.26.2, scrime-1.3.5, scuttle-1.8.4, SeqArray-1.38.0, seqLogo-1.64.0, SeqVarTools-1.36.0, seriation-1.4.2, Seurat-4.3.0, SeuratObject-4.1.3, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.3, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.7.6, ShortRead-1.56.1, siggenes-1.72.0, Signac-1.9.0, simplifyEnrichment-1.8.0, SingleCellExperiment-1.20.0, SingleR-2.0.0, sitmo-2.0.2, slingshot-2.6.0, SMVar-1.3.4, SNPRelate-1.32.2, snpStats-1.48.0, sparseMatrixStats-1.10.0, sparsesvd-0.2-2, SpatialExperiment-1.8.1, SPIA-2.50.0, splancs-2.01-43, SPOTlight-1.2.0, stageR-1.20.0, struct-1.10.0, structToolbox-1.10.1, SummarizedExperiment-1.28.0, susieR-0.12.35, sva-3.46.0, TailRank-3.2.2, TFBSTools-1.36.0, TFMPvalue-0.0.9, tkWidgets-1.76.0, TrajectoryUtils-1.6.0, treeio-1.22.0, TreeSummarizedExperiment-2.6.0, TSP-1.2-3, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.26.1, UCell-2.2.0, uwot-0.1.14, variancePartition-1.28.7, VariantAnnotation-1.44.1, venn-1.11, vsn-3.66.0, waiter-0.2.5, wateRmelon-2.4.0, WGCNA-1.72-1, widgetTools-1.76.0, Wrench-1.16.0, xcms-3.20.0, XVector-0.38.0, zCompositions-1.4.0-1, zellkonverter-1.8.0, zlibbioc-1.44.0"}, "R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "affxparser-1.74.0, affy-1.80.0, affycoretools-1.74.0, affyio-1.72.0, AgiMicroRna-2.52.0, agricolae-1.3-7, ALDEx2-1.34.0, ALL-1.44.0, ANCOMBC-2.4.0, annaffy-1.74.0, annotate-1.80.0, AnnotationDbi-1.64.1, AnnotationFilter-1.26.0, AnnotationForge-1.44.0, AnnotationHub-3.10.0, anytime-0.3.9, aroma.affymetrix-3.2.1, aroma.apd-0.7.0, aroma.core-3.3.0, aroma.light-3.32.0, ash-1.0-15, ATACseqQC-1.26.0, AUCell-1.24.0, aws.s3-0.3.21, aws.signature-0.6.0, babelgene-22.9, ballgown-2.34.0, basilisk-1.14.2, basilisk.utils-1.14.1, batchelor-1.18.1, baySeq-2.36.0, beachmat-2.18.0, BH-1.84.0-0, Biobase-2.62.0, BiocBaseUtils-1.4.0, BiocFileCache-2.10.1, BiocGenerics-0.48.0, BiocIO-1.12.0, BiocManager-1.30.22, BiocNeighbors-1.20.2, BiocParallel-1.36.0, BiocSingular-1.18.0, BiocStyle-2.30.0, BiocVersion-3.18.1, biomaRt-2.58.0, biomformat-1.30.0, Biostrings-2.70.0, biovizBase-1.50.0, blme-1.0-5, bluster-1.12.0, bookdown-0.37, BSgenome-1.70.1, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.5, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.38.0, bumphunter-1.44.0, ca-0.71.1, CAGEfightR-1.22.0, CAGEr-2.8.0, CAMERA-1.58.0, Category-2.68.0, ccdata-1.28.0, ccmap-1.28.0, CGHbase-1.62.0, CGHcall-2.64.0, ChIPpeakAnno-3.36.0, chromVAR-1.24.0, clusterProfiler-4.10.0, CNEr-1.38.0, coloc-5.2.3, colorRamps-2.3.1, ComplexHeatmap-2.18.0, ConsensusClusterPlus-1.66.0, conumee-1.36.0, crossmeta-1.28.0, cummeRbund-2.44.0, cytolib-2.14.1, CytoML-2.14.0, dada2-1.30.0, ddPCRclust-1.22.0, DECIPHER-2.30.0, DeconRNASeq-1.44.0, decontam-1.22.0, decoupleR-2.8.0, DEGseq-1.56.1, DelayedArray-0.28.0, DelayedMatrixStats-1.24.0, densEstBayes-1.0-2.2, derfinder-1.36.0, derfinderHelper-1.36.0, DESeq2-1.42.0, diffcyt-1.22.0, dir.expiry-1.10.0, directlabels-2024.1.21, DirichletMultinomial-1.44.0, DNABarcodes-1.32.0, DNAcopy-1.76.0, DO.db-2.9, docopt-0.7.1, DOSE-3.28.2, dqrng-0.3.2, DRIMSeq-1.30.0, DropletUtils-1.22.0, DSS-2.50.1, dupRadar-1.32.0, DynDoc-1.80.0, EBImage-4.44.0, edgeR-4.0.12, egg-0.4.5, emmeans-1.10.0, enrichplot-1.22.0, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.26.0, escape-1.12.0, estimability-1.4.1, ExperimentHub-2.10.0, extraDistr-1.10.0, factoextra-1.0.7, fANCOVA-0.6-1, fda-6.1.4, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, feature-1.2.15, fgsea-1.28.0, filelock-1.0.3, flowAI-1.32.0, flowClean-1.40.0, flowClust-3.40.0, flowCore-2.14.0, flowDensity-1.36.1, flowFP-1.60.0, flowMerge-2.50.0, flowPeaks-1.48.0, FlowSOM-2.10.0, FlowSorted.Blood.EPIC-2.6.0, FlowSorted.CordBloodCombined.450k-1.18.0, flowStats-4.14.1, flowViz-1.66.0, flowWorkspace-4.14.2, FRASER-1.14.0, fresh-0.2.0, gcrma-2.74.0, gdsfmt-1.38.0, genefilter-1.84.0, geneLenDataBase-1.38.0, geneplotter-1.80.0, GENESIS-2.32.0, GENIE3-1.24.0, GenomeInfoDb-1.38.5, GenomeInfoDbData-1.2.11, GenomicAlignments-1.38.2, GenomicFeatures-1.54.1, GenomicFiles-1.38.0, GenomicInteractions-1.36.0, GenomicRanges-1.54.1, GenomicScores-2.14.3, GEOmap-2.5-5, GEOquery-2.70.0, ggbio-1.50.0, ggcyto-1.30.0, ggdendro-0.1.23, ggnewscale-0.4.9, ggpointdensity-0.1.0, ggrastr-1.0.2, ggseqlogo-0.1, ggthemes-5.0.0, ggtree-3.10.0, GLAD-2.66.0, Glimma-2.12.0, GlobalAncova-4.20.0, globaltest-5.56.0, GO.db-3.18.0, GOSemSim-2.28.1, goseq-1.54.0, GOstats-2.68.0, graph-1.80.0, graphite-1.48.0, GSEABase-1.64.0, gsmoothr-0.1.7, gson-0.1.0, GSVA-1.50.0, Gviz-1.46.1, GWASExactHW-1.01, GWASTools-1.48.0, HDF5Array-1.30.0, HDO.db-0.99.1, hdrcde-3.4, heatmaply-1.5.0, hgu133plus2.db-3.13.0, HiCBricks-1.20.0, HiCcompare-1.24.0, HMMcopy-1.44.0, Homo.sapiens-1.3.1, IHW-1.30.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.44.0, impute-1.76.0, InteractionSet-1.30.0, interactiveDisplayBase-1.40.0, intervals-0.15.4, IRanges-2.36.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.62.0, KEGGREST-1.42.0, LEA-3.14.0, limma-3.58.1, log4r-0.4.3, lpsymphony-1.30.0, lsa-0.73.3, lumi-2.54.0, M3Drop-1.28.0, marray-1.80.0, maSigPro-1.74.0, MassSpecWavelet-1.68.0, MatrixGenerics-1.14.0, MBA-0.1-0, MEDIPS-1.54.0, MetaboCoreUtils-1.10.0, metagenomeSeq-1.43.0, metaMA-3.1.3, metap-1.9, metapod-1.10.1, MethylSeekR-1.42.0, methylumi-2.48.0, Mfuzz-2.62.0, mia-1.10.0, minfi-1.48.0, missMethyl-1.36.0, mixOmics-6.26.0, mixsqp-0.3-54, MLInterfaces-1.82.0, MotifDb-1.44.0, motifmatchr-1.24.0, motifStack-1.46.0, MsCoreUtils-1.14.1, MsExperiment-1.4.0, MsFeatures-1.10.0, msigdbr-7.5.1, MSnbase-2.28.1, MSstats-4.10.0, MSstatsConvert-1.12.0, MSstatsLiP-1.8.1, MSstatsPTM-2.4.2, MSstatsTMT-2.10.0, MultiAssayExperiment-1.28.0, MultiDataSet-1.30.0, multtest-2.58.0, muscat-1.16.0, mutoss-0.1-13, mzID-1.40.0, mzR-2.36.0, NADA-1.6-1.1, ncdfFlow-2.48.0, NMF-0.26, NOISeq-2.46.0, numbat-1.3.2-1, oligo-1.66.0, oligoClasses-1.64.0, ontologyIndex-2.11, oompaBase-3.2.9, oompaData-3.1.3, openCyto-2.14.0, org.Hs.eg.db-3.18.0, org.Mm.eg.db-3.18.0, org.Rn.eg.db-3.18.0, OrganismDbi-1.44.0, OUTRIDER-1.20.0, pathview-1.42.0, pcaMethods-1.94.0, perm-1.0-0.4, PFAM.db-3.18.0, phyloseq-1.46.0, plyranges-1.22.0, pmp-1.14.0, polyester-1.38.0, poweRlaw-0.70.6, preprocessCore-1.64.0, pRoloc-1.42.0, pRolocdata-1.40.0, pRolocGUI-2.12.0, ProtGenerics-1.34.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.8.1, qap-0.1-2, QDNAseq-1.38.0, QFeatures-1.12.0, qlcMatrix-0.9.7, qqconf-1.3.2, quantsmooth-1.68.0, qvalue-2.34.0, R.devices-2.17.1, R.filesets-2.15.0, R.huge-0.10.1, rainbow-3.8, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.78.0, RcisTarget-1.22.0, RcppAnnoy-0.0.22, RcppHNSW-0.5.0, RcppML-0.3.7, RcppZiggurat-0.1.6, reactome.db-1.86.2, ReactomePA-1.46.0, regioneR-1.34.0, reldist-1.7-2, remaCor-0.0.16, Repitools-1.48.0, ReportingTools-2.42.3, ResidualMatrix-1.12.0, restfulr-0.0.15, Rfast-2.1.0, RFOC-3.4-10, rGADEM-2.50.0, Rgraphviz-2.46.0, rhdf5-2.46.1, rhdf5filters-1.14.1, Rhdf5lib-1.24.1, Rhtslib-2.4.1, Ringo-1.66.0, RNASeqPower-1.42.0, RnBeads-2.20.0, RnBeads.hg19-1.34.0, RnBeads.hg38-1.34.0, RnBeads.mm10-2.10.0, RnBeads.mm9-1.34.0, RnBeads.rn5-1.34.0, ROC-1.78.0, rols-2.30.0, ROntoTools-2.30.0, ropls-1.34.0, RPMG-2.2-7, RProtoBufLib-2.14.0, Rsamtools-2.18.0, RSEIS-4.1-6, Rsubread-2.16.1, rsvd-1.0.5, rtracklayer-1.62.0, Rwave-2.6-5, S4Arrays-1.2.0, S4Vectors-0.40.2, samr-3.0, SamSPECTRAL-1.56.0, SC3-1.30.0, ScaledMatrix-1.10.0, SCANVIS-1.16.0, scater-1.30.1, scattermore-1.2, scDblFinder-1.16.0, scistreer-1.2.0, scran-1.30.2, scrime-1.3.5, scuttle-1.12.0, SeqArray-1.42.0, seqLogo-1.68.0, SeqVarTools-1.40.0, seriation-1.5.4, Seurat-5.0.1, SeuratObject-5.0.1, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.3, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.8.1, ShortRead-1.60.0, siggenes-1.76.0, Signac-1.12.0, simplifyEnrichment-1.12.0, SingleCellExperiment-1.24.0, SingleR-2.4.1, sitmo-2.0.2, slingshot-2.10.0, SMVar-1.3.4, SNPRelate-1.36.0, snpStats-1.52.0, SparseArray-1.2.3, sparseMatrixStats-1.14.0, sparsesvd-0.2-2, SpatialExperiment-1.12.0, Spectra-1.12.0, SPIA-2.54.0, splancs-2.01-44, SPOTlight-1.6.7, stageR-1.24.0, struct-1.14.0, structToolbox-1.14.0, SummarizedExperiment-1.32.0, susieR-0.12.35, sva-3.50.0, TailRank-3.2.2, TFBSTools-1.40.0, TFMPvalue-0.0.9, tkWidgets-1.80.0, TrajectoryUtils-1.10.0, treeio-1.26.0, TreeSummarizedExperiment-2.10.0, TSP-1.2-4, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.30.0, UCell-2.6.2, uwot-0.1.16, variancePartition-1.32.2, VariantAnnotation-1.48.1, venn-1.12, vsn-3.70.0, waiter-0.2.5, wateRmelon-2.8.0, WGCNA-1.72-5, widgetTools-1.80.0, Wrench-1.20.0, xcms-4.0.2, XVector-0.42.0, zCompositions-1.5.0-1, zellkonverter-1.12.1, zlibbioc-1.48.0"}, "R-bundle-Bioconductor/3.10-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "admisc-0.5, affy-1.64.0, affycoretools-1.58.4, affyio-1.56.0, AgiMicroRna-2.36.0, ALDEx2-1.18.0, ALL-1.28.0, annaffy-1.58.0, annotate-1.64.0, AnnotationDbi-1.48.0, AnnotationFilter-1.10.0, AnnotationForge-1.28.0, AnnotationHub-2.18.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.1, aroma.light-3.16.0, askpass-1.1, ATACseqQC-1.10.2, ballgown-2.18.0, batchelor-1.2.4, baySeq-2.20.0, beachmat-2.2.1, Biobase-2.46.0, BiocFileCache-1.10.2, BiocGenerics-0.32.0, BiocManager-1.30.10, BiocNeighbors-1.4.1, BiocParallel-1.20.1, BiocSingular-1.2.2, BiocVersion-3.10.1, biomaRt-2.42.0, biomformat-1.14.0, Biostrings-2.54.0, biovizBase-1.34.1, BSgenome-1.54.0, BSgenome.Hsapiens.UCSC.hg19-1.4.0, BSgenome.Hsapiens.UCSC.hg38-1.4.1, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.28.0, CAMERA-1.42.0, Category-2.52.1, CGHbase-1.46.0, ChIPpeakAnno-3.20.1, clue-0.3-57, ComplexHeatmap-2.2.0, ConsensusClusterPlus-1.50.0, cummeRbund-2.28.0, cytolib-1.8.0, CytoML-1.12.1, dada2-1.14.1, DeconRNASeq-1.28.0, DEGseq-1.40.0, DelayedArray-0.12.2, DelayedMatrixStats-1.8.0, derfinder-1.20.0, derfinderHelper-1.20.0, DESeq2-1.26.0, diffcyt-1.6.6, DNAcopy-1.60.0, dqrng-0.2.1, DRIMSeq-1.14.0, DropletUtils-1.6.1, dupRadar-1.16.0, DynDoc-1.64.0, EBImage-4.28.1, edgeR-3.28.0, ensembldb-2.10.2, fda-5.1.4, FDb.InfiniumMethylation.hg19-2.2.0, fgsea-1.12.0, flowClust-3.24.0, flowCore-1.52.1, FlowSOM-1.18.0, flowStats-3.44.0, flowViz-1.50.0, flowWorkspace-3.34.1, fs-1.3.1, gcrma-2.58.0, gdsfmt-1.22.0, genefilter-1.68.0, geneLenDataBase-1.22.0, geneplotter-1.64.0, GENESIS-2.16.1, GENIE3-1.8.0, GenomeGraphs-1.46.0, GenomeInfoDb-1.22.0, GenomeInfoDbData-1.2.2, GenomicAlignments-1.22.1, GenomicFeatures-1.38.2, GenomicFiles-1.22.0, GenomicRanges-1.38.0, GenomicScores-1.10.0, genoset-1.42.0, GEOquery-2.54.1, ggbio-1.34.0, ggcyto-1.14.1, ggplot2-3.3.0, Glimma-1.14.0, GlobalAncova-4.4.0, globaltest-5.40.0, GO.db-3.10.0, goseq-1.38.0, GOstats-2.52.0, graph-1.64.0, GSEABase-1.48.0, gsmoothr-0.1.7, GSVA-1.34.0, Gviz-1.30.3, GWASExactHW-1.01, GWASTools-1.32.0, HDF5Array-1.14.2, hgu133plus2.db-3.2.3, HMMcopy-1.28.1, Homo.sapiens-1.3.1, IHW-1.14.0, illuminaio-0.28.0, impute-1.60.0, interactiveDisplayBase-1.24.0, IRanges-2.20.2, isoband-0.2.1, KEGG.db-3.2.3, KEGGgraph-1.46.0, KEGGprofile-1.28.0, KEGGREST-1.26.1, LEA-2.8.0, limma-3.42.2, lpsymphony-1.14.0, lumi-2.38.0, MALDIquant-1.19.3, marray-1.64.0, maSigPro-1.58.0, MassSpecWavelet-1.52.0, MEDIPS-1.38.0, metagenomeSeq-1.28.2, metap-1.3, methylumi-2.32.0, Mfuzz-2.46.0, minfi-1.32.0, mixOmics-6.10.8, MLInterfaces-1.66.2, MotifDb-1.28.0, motifStack-1.30.0, MotIV-1.42.0, MSnbase-2.12.0, multtest-2.42.0, mutoss-0.1-12, mzID-1.24.0, mzR-2.20.0, ncdfFlow-2.32.0, NOISeq-2.30.0, oligoClasses-1.48.0, openCyto-1.24.0, org.Hs.eg.db-3.10.0, OrganismDbi-1.28.0, pcaMethods-1.78.0, perm-1.0-0.0, PFAM.db-3.10.0, phyloseq-1.30.0, polyester-1.22.0, preprocessCore-1.48.0, pRoloc-1.26.0, pRolocdata-1.24.0, pRolocGUI-1.20.0, ProtGenerics-1.18.0, PSCBS-0.65.0, PureCN-1.16.0, quantsmooth-1.52.0, qvalue-2.18.0, R.devices-2.16.1, R.filesets-2.13.0, R.huge-0.9.0, R.utils-2.9.2, rappdirs-0.3.1, rARPACK-0.11-0, RBGL-1.62.1, RcppAnnoy-0.0.14, RcppHNSW-0.2.0, RcppParallel-4.4.4, readr-1.3.1, regioneR-1.18.1, Repitools-1.32.0, ReportingTools-2.26.0, rGADEM-2.34.1, Rgraphviz-2.30.0, rhdf5-2.30.1, Rhdf5lib-1.8.0, Rhtslib-1.18.1, Ringo-1.50.0, RNASeqPower-1.26.0, RProtoBufLib-1.8.0, Rsamtools-2.2.3, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.0.1, rsvd-1.0.3, rtracklayer-1.46.0, S4Vectors-0.24.3, samr-3.0, SC3-1.14.0, scater-1.14.6, scran-1.14.6, scrime-1.3.5, SeqArray-1.26.2, seqLogo-1.52.0, SeqVarTools-1.24.0, Seurat-3.1.5, shinyFiles-0.7.5, ShortRead-1.44.3, sigaR-1.34.0, siggenes-1.60.0, SingleCellExperiment-1.8.0, sitmo-2.0.1, SNPRelate-1.20.1, SPIA-2.38.0, SSPA-2.26.0, stageR-1.8.0, SummarizedExperiment-1.16.1, sva-3.34.0, sys-3.3, tkWidgets-1.64.0, truncnorm-1.0-8, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.14.0, uwot-0.1.8, VariantAnnotation-1.32.0, venn-1.9, vsn-3.54.0, widgetTools-1.64.0, Wrench-1.4.0, xcms-3.8.1, XVector-0.26.0, zlibbioc-1.32.0"}, "R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "admisc-0.8, affxparser-1.60.0, affy-1.66.0, affycoretools-1.60.0, affyio-1.58.0, AgiMicroRna-2.38.0, ALDEx2-1.20.0, ALL-1.30.0, annaffy-1.60.0, annotate-1.66.0, AnnotationDbi-1.50.0, AnnotationFilter-1.12.0, AnnotationForge-1.30.1, AnnotationHub-2.20.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.1, aroma.light-3.18.0, ATACseqQC-1.12.0, ballgown-2.20.0, batchelor-1.4.0, baySeq-2.22.0, beachmat-2.4.0, Biobase-2.48.0, BiocFileCache-1.12.0, BiocGenerics-0.34.0, BiocManager-1.30.10, BiocNeighbors-1.6.0, BiocParallel-1.22.0, BiocSingular-1.4.0, BiocVersion-3.11.1, biomaRt-2.44.0, biomformat-1.16.0, Biostrings-2.56.0, biovizBase-1.36.0, blme-1.0-4, BSgenome-1.56.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.3, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.30.0, CAMERA-1.44.0, Category-2.54.0, ccdata-1.14.0, ccmap-1.14.0, CGHbase-1.48.0, ChIPpeakAnno-3.22.0, coloc-3.2-1, colorRamps-2.3, ComplexHeatmap-2.4.2, ConsensusClusterPlus-1.52.0, conumee-1.22.0, crossmeta-1.14.0, cummeRbund-2.30.0, cytolib-2.0.0, CytoML-2.0.0, dada2-1.16.0, DeconRNASeq-1.30.0, DEGseq-1.42.0, DelayedArray-0.14.0, DelayedMatrixStats-1.10.0, derfinder-1.22.0, derfinderHelper-1.22.0, DESeq2-1.28.0, diffcyt-1.8.0, DNAcopy-1.62.0, dqrng-0.2.1, DRIMSeq-1.16.0, DropletUtils-1.8.0, dupRadar-1.18.0, DynDoc-1.66.0, EBImage-4.30.0, edgeR-3.30.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.12.0, ExperimentHub-1.14.0, fda-5.1.4, FDb.InfiniumMethylation.hg19-2.2.0, fgsea-1.14.0, flowClust-3.26.0, flowCore-2.0.0, FlowSOM-1.20.0, FlowSorted.Blood.EPIC-1.6.1, FlowSorted.CordBloodCombined.450k-1.4.1, flowStats-4.0.0, flowViz-1.52.0, flowWorkspace-4.0.0, gcrma-2.60.0, gdsfmt-1.24.0, genefilter-1.70.0, geneLenDataBase-1.24.0, geneplotter-1.66.0, GENESIS-2.18.0, GENIE3-1.10.0, GenomeInfoDb-1.24.0, GenomeInfoDbData-1.2.3, GenomicAlignments-1.24.0, GenomicFeatures-1.40.0, GenomicFiles-1.24.0, GenomicRanges-1.40.0, GenomicScores-2.0.0, genoset-1.44.0, GEOquery-2.56.0, ggbio-1.36.0, ggcyto-1.16.0, GLAD-2.52.0, Glimma-1.16.0, GlobalAncova-4.6.0, globaltest-5.42.0, GO.db-3.11.4, goseq-1.40.0, GOstats-2.54.0, graph-1.66.0, GSEABase-1.50.0, gsmoothr-0.1.7, GSVA-1.36.0, Gviz-1.32.0, GWASExactHW-1.01, GWASTools-1.34.0, HDF5Array-1.16.0, hgu133plus2.db-3.2.3, HMMcopy-1.30.0, Homo.sapiens-1.3.1, IHW-1.16.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.30.0, impute-1.62.0, interactiveDisplayBase-1.26.0, IRanges-2.22.1, isoband-0.2.1, isva-1.9, KEGG.db-3.2.4, KEGGgraph-1.48.0, KEGGprofile-1.30.0, KEGGREST-1.28.0, LEA-3.0.0, limma-3.44.1, lpsymphony-1.16.0, lsa-0.73.2, lumi-2.40.0, MALDIquant-1.19.3, marray-1.66.0, maSigPro-1.60.0, MassSpecWavelet-1.54.0, MEDIPS-1.40.0, metagenomeSeq-1.30.0, metaMA-3.1.2, metap-1.3, MethylSeekR-1.28.0, methylumi-2.34.0, Mfuzz-2.48.0, minfi-1.34.0, missMethyl-1.22.0, mixOmics-6.12.0, MLInterfaces-1.68.0, MotifDb-1.30.0, motifStack-1.32.0, MotIV-1.43.0, MSnbase-2.14.0, multtest-2.44.0, muscat-1.2.0, mutoss-0.1-12, mzID-1.26.0, mzR-2.22.0, NADA-1.6-1.1, ncdfFlow-2.34.0, NOISeq-2.31.0, oligo-1.52.1, oligoClasses-1.50.0, openCyto-2.0.0, org.Hs.eg.db-3.11.4, org.Mm.eg.db-3.11.4, org.Rn.eg.db-3.11.4, OrganismDbi-1.30.0, pcaMethods-1.80.0, perm-1.0-0.0, PFAM.db-3.11.4, phyloseq-1.32.0, polyester-1.24.0, preprocessCore-1.50.0, pRoloc-1.28.0, pRolocdata-1.26.0, pRolocGUI-1.22.0, ProtGenerics-1.20.0, PSCBS-0.65.0, PureCN-1.18.0, quantsmooth-1.54.0, qvalue-2.20.0, R.devices-2.16.1, R.filesets-2.13.0, R.huge-0.9.0, R.utils-2.9.2, rappdirs-0.3.1, rARPACK-0.11-0, RBGL-1.64.0, RcppAnnoy-0.0.16, RcppHNSW-0.2.0, RcppParallel-5.0.1, RcppZiggurat-0.1.5, readr-1.3.1, regioneR-1.20.0, Repitools-1.34.0, ReportingTools-2.28.0, Rfast-1.9.9, rGADEM-2.36.0, Rgraphviz-2.32.0, rhdf5-2.32.0, Rhdf5lib-1.10.0, Rhtslib-1.20.0, Ringo-1.52.0, RNASeqPower-1.28.0, ROC-1.64.0, RProtoBufLib-2.0.0, RProtoBufLib-2.0.0, Rsamtools-2.4.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.2.1, rsvd-1.0.3, rtracklayer-1.48.0, S4Vectors-0.26.0, samr-3.0, SC3-1.16.0, SCANVIS-1.2.0, scater-1.16.0, scran-1.16.0, scrime-1.3.5, SeqArray-1.28.0, seqLogo-1.54.1, SeqVarTools-1.26.0, Seurat-3.1.5, shinyFiles-0.8.0, ShortRead-1.46.0, sigaR-1.35.0, siggenes-1.62.0, SingleCellExperiment-1.10.1, SingleR-1.2.4, sitmo-2.0.1, SMVar-1.3.3, SNPRelate-1.22.0, snpStats-1.38.0, SPIA-2.40.0, SSPA-2.28.0, stageR-1.10.0, SummarizedExperiment-1.18.1, sva-3.36.0, sva-3.36.0, tkWidgets-1.66.0, truncnorm-1.0-8, truncnorm-1.0-8, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.16.0, uwot-0.1.8, variancePartition-1.18.0, VariantAnnotation-1.34.0, venn-1.9, vsn-3.56.0, wateRmelon-1.32.0, widgetTools-1.66.0, Wrench-1.6.0, xcms-3.10.0, xgboost-1.2.0.1, XVector-0.28.0, zCompositions-1.3.4, zlibbioc-1.34.0"}, "R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "admisc-0.15, affxparser-1.64.0, affy-1.70.0, affycoretools-1.64.0, affyio-1.62.0, AgiMicroRna-2.42.0, agricolae-1.3-3, ALDEx2-1.24.0, ALL-1.34.0, annaffy-1.63.1, annotate-1.70.0, AnnotationDbi-1.54.0, AnnotationFilter-1.16.0, AnnotationForge-1.34.0, AnnotationHub-3.0.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.22.0, ash-1.0-15, ATACseqQC-1.16.0, AUCell-1.14.0, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.24.0, batchelor-1.8.0, baySeq-2.26.0, beachmat-2.8.0, Biobase-2.52.0, BiocFileCache-2.0.0, BiocGenerics-0.38.0, BiocIO-1.2.0, BiocManager-1.30.15, BiocNeighbors-1.10.0, BiocParallel-1.26.0, BiocSingular-1.8.0, BiocStyle-2.20.0, BiocVersion-3.13.1, biomaRt-2.48.0, biomformat-1.20.0, Biostrings-2.60.0, biovizBase-1.40.0, blme-1.0-5, bluster-1.2.1, bookdown-0.22, BSgenome-1.60.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.3, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.34.0, CAMERA-1.48.0, Category-2.58.0, ccdata-1.18.0, ccmap-1.18.0, CGHbase-1.52.0, ChIPpeakAnno-3.26.0, CNEr-1.28.0, coloc-3.2-1, colorRamps-2.3, ComplexHeatmap-2.8.0, ConsensusClusterPlus-1.56.0, conumee-1.26.0, crossmeta-1.18.0, cummeRbund-2.34.0, cytolib-2.4.0, CytoML-2.4.0, dada2-1.20.0, DeconRNASeq-1.34.0, DEGseq-1.46.0, DelayedArray-0.18.0, DelayedMatrixStats-1.14.0, derfinder-1.26.0, derfinderHelper-1.26.0, DESeq2-1.32.0, diffcyt-1.12.0, DirichletMultinomial-1.34.0, DNAcopy-1.66.0, docopt-0.7.1, dqrng-0.3.0, DRIMSeq-1.20.0, DropletUtils-1.12.1, dupRadar-1.22.0, DynDoc-1.70.0, EBImage-4.34.0, edgeR-3.34.0, egg-0.4.5, emmeans-1.6.1, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.16.0, estimability-1.3, ExperimentHub-2.0.0, extraDistr-1.9.1, fda-5.1.9, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.18.0, filelock-1.0.2, flowClust-3.30.0, flowCore-2.4.0, FlowSOM-2.0.0, FlowSorted.Blood.EPIC-1.10.1, FlowSorted.CordBloodCombined.450k-1.8.0, flowStats-4.4.0, flowViz-1.56.0, flowWorkspace-4.4.0, FRASER-1.4.0, fresh-0.2.0, gcrma-2.64.0, gdsfmt-1.28.0, GenABEL-1.8-0, GenABEL.data-1.0.0, genefilter-1.74.0, geneLenDataBase-1.28.0, geneplotter-1.70.0, GENESIS-2.22.0, GENIE3-1.14.0, GenomeInfoDb-1.28.0, GenomeInfoDbData-1.2.6, GenomicAlignments-1.28.0, GenomicFeatures-1.44.0, GenomicFiles-1.28.0, GenomicRanges-1.44.0, GenomicScores-2.4.0, GEOquery-2.60.0, ggbio-1.40.0, ggcyto-1.20.0, ggdendro-0.1.22, ggnewscale-0.4.5, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.56.0, Glimma-2.2.0, GlobalAncova-4.10.0, globaltest-5.46.0, GO.db-3.13.0, goseq-1.44.0, GOstats-2.58.0, graph-1.70.0, GSEABase-1.54.0, gsmoothr-0.1.7, GSVA-1.40.0, Gviz-1.36.1, GWASExactHW-1.01, GWASTools-1.38.0, HDF5Array-1.20.0, hdrcde-3.4, heatmaply-1.2.1, hgu133plus2.db-3.13.0, HMMcopy-1.34.0, Homo.sapiens-1.3.1, IHW-1.20.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.34.0, impute-1.66.0, InteractionSet-1.20.0, interactiveDisplayBase-1.30.0, IRanges-2.26.0, isva-1.9, JASPAR2020-0.99.10, KEGG.db-3.2.4, KEGGgraph-1.52.0, KEGGREST-1.32.0, LEA-3.4.0, limma-3.48.0, lpsymphony-1.20.0, lsa-0.73.2, lumi-2.44.0, marray-1.70.0, maSigPro-1.64.0, MassSpecWavelet-1.58.0, mathjaxr-1.4-0, MatrixGenerics-1.4.0, MEDIPS-1.44.0, metagenomeSeq-1.34.0, metaMA-3.1.2, metap-1.4, metapod-1.0.0, MethylSeekR-1.32.0, methylumi-2.38.0, Mfuzz-2.52.0, minfi-1.38.0, missMethyl-1.26.0, mixOmics-6.16.0, MLInterfaces-1.72.0, MotifDb-1.34.0, motifmatchr-1.14.0, motifStack-1.36.0, MsCoreUtils-1.4.0, MSnbase-2.18.0, MultiDataSet-1.20.0, multtest-2.48.0, muscat-1.6.0, mutoss-0.1-12, mzID-1.30.0, mzR-2.26.0, NADA-1.6-1.1, ncdfFlow-2.38.0, NMF-0.23.0, NOISeq-2.36.0, oligo-1.56.0, oligoClasses-1.54.0, ontologyIndex-2.7, openCyto-2.4.0, org.Hs.eg.db-3.13.0, org.Mm.eg.db-3.13.0, org.Rn.eg.db-3.13.0, OrganismDbi-1.34.0, OUTRIDER-1.10.0, pcaMethods-1.84.0, perm-1.0-0.0, PFAM.db-3.13.0, phyloseq-1.36.0, pmp-1.4.0, polyester-1.28.0, poweRlaw-0.70.6, preprocessCore-1.54.0, pRoloc-1.32.0, pRolocdata-1.30.0, pRolocGUI-2.2.0, ProtGenerics-1.24.0, PRROC-1.3.1, PSCBS-0.65.0, PureCN-1.22.1, qap-0.1-1, qlcMatrix-0.9.7, quantsmooth-1.58.0, qvalue-2.24.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.68.0, RcisTarget-1.12.0, RcppAnnoy-0.0.18, RcppHNSW-0.3.0, RcppZiggurat-0.1.6, regioneR-1.24.0, Repitools-1.38.0, ReportingTools-2.32.0, ResidualMatrix-1.2.0, restfulr-0.0.13, Rfast-2.0.3, rGADEM-2.40.0, Rgraphviz-2.36.0, rhdf5-2.36.0, rhdf5filters-1.4.0, Rhdf5lib-1.14.0, Rhtslib-1.24.0, Ringo-1.56.0, RNASeqPower-1.32.0, ROC-1.68.0, ropls-1.24.0, RProtoBufLib-2.4.0, Rsamtools-2.8.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.6.1, rsvd-1.0.5, rtracklayer-1.52.0, S4Vectors-0.30.0, samr-3.0, SC3-1.20.0, ScaledMatrix-1.0.0, SCANVIS-1.6.0, scater-1.20.0, scattermore-0.7, scran-1.20.1, scrime-1.3.5, sctransform-0.3.2, scuttle-1.2.0, SeqArray-1.32.0, seqLogo-1.58.0, SeqVarTools-1.30.0, seriation-1.2-9, Seurat-4.0.3, SeuratObject-4.0.2, shinyBS-0.61, shinydashboardPlus-2.0.1, shinyFiles-0.9.0, shinyhelper-0.3.2, shinypanel-0.1.4, shinyWidgets-0.6.0, ShortRead-1.50.0, siggenes-1.66.0, Signac-1.2.1, SingleCellExperiment-1.14.1, SingleR-1.6.1, sitmo-2.0.1, SMVar-1.3.3, SNPRelate-1.26.0, snpStats-1.42.0, sparseMatrixStats-1.4.0, sparsesvd-0.2, SPIA-2.44.0, stageR-1.14.0, struct-1.4.0, structToolbox-1.4.0, SummarizedExperiment-1.22.0, sva-3.40.0, TFBSTools-1.30.0, TFMPvalue-0.0.8, tkWidgets-1.70.0, truncnorm-1.0-8, TSP-1.1-10, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.20.0, uwot-0.1.10, variancePartition-1.22.0, VariantAnnotation-1.38.0, venn-1.10, vsn-3.60.0, waiter-0.2.1, wateRmelon-1.36.0, widgetTools-1.70.0, Wrench-1.10.0, xcms-3.14.0, XVector-0.32.0, zCompositions-1.3.4, zlibbioc-1.38.0"}}, "description": "Bioconductor provides tools for the analysis and coprehension of high-throughput genomic data.", "homepage": "https://bioconductor.org"}, "R-bundle-CRAN": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"R-bundle-CRAN/2023.12-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "abc-2.2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.2, adabag-5.0, ade4-1.7-22, ADGofTest-0.3, admisc-0.34, aggregation-1.0.1, AICcmodavg-2.3-3, akima-0.6-3.4, alabama-2023.1.0, AlgDesign-1.2.1, alluvial-0.1-2, AMAPVox-1.0.1, animation-2.7, aod-1.3.2, apcluster-1.4.11, ape-5.7-1, aplot-0.2.2, argparse-2.2.2, aricode-1.0.3, arm-1.13-1, arrayhelpers-1.1-0, asnipe-1.1.17, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-4, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-11, aws-2.5-3, awsMethods-1.1-1, backports-1.4.1, bacr-1.0.1, bartMachine-1.3.4.1, bartMachineJARs-1.2.1, base64-2.0.1, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.8, BayesLogit-2.1, bayesm-3.1-6, BayesPen-1.0, bayesplot-1.10.0, BB-2019.10-1, BBmisc-1.13, bbmle-1.0.25.1, BCEE-1.3.2, BDgraph-2.72, bdsmatrix-1.3-6, beanplot-1.3.1, beeswarm-0.4.0, berryFunctions-1.22.0, betareg-3.1-4, BH-1.81.0-1, BiasedUrn-2.0.11, bibtex-0.5.1, BIEN-1.2.6, bigD-0.2.0, BIGL-1.8.0, bigmemory-4.6.1, bigmemory.sri-0.1.6, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-4, biom-0.3.12, biomod2-4.2-4, bit-4.0.5, bit64-4.0.5, bitops-1.0-7, blavaan-0.5-2, blob-1.2.4, BMA-3.18.17, bmp-0.3, bnlearn-4.9.1, bold-1.3.0, boot-1.3-28.1, bootstrap-2019.6, Boruta-8.0.0, brglm-0.7.2, bridgedist-0.1.2, bridgesampling-1.1-2, brms-2.20.4, Brobdingnag-1.2-9, broom-1.0.5, broom.helpers-1.14.0, broom.mixed-0.2.9.4, bst-0.3-24, Cairo-1.6-2, calibrate-1.7.7, car-3.1-2, carData-3.0-5, caret-6.0-94, catlearn-1.0, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, changepoint-2.2.4, checkmate-2.3.1, chemometrics-1.4.4, chk-0.9.1, chkptstanr-0.1.1, chron-2.3-61, circlize-0.4.15, circular-0.5-0, class-7.3-22, classInt-0.4-10, cld2-1.2.4, clisymbols-1.2.0, clock-0.7.0, clue-0.3-65, cluster-2.1.6, clusterGeneration-1.3.8, clusterRepro-0.9, clustree-0.5.1, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.4, cobalt-4.5.2, cobs-1.3-5, coda-0.19-4, codetools-0.2-19, coin-1.4-3, collapse-2.0.7, colorspace-2.1-0, colourpicker-1.3.0, combinat-0.0-8, ComICS-1.0.4, ComplexUpset-1.3.3, compositions-2.0-6, CompQuadForm-1.4.3, conditionz-0.1.0, conflicted-1.2.0, conquer-1.3.3, ConsRank-2.1.3, contfrac-1.1-12, copCAR-2.0-4, copula-1.1-3, corpcor-1.6.10, corrplot-0.92, covr-3.6.4, CovSel-1.2.1, covsim-1.0.0, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-18.1, crfsuite-0.4.2, crosstalk-1.2.1, crul-1.4.0, cSEM-0.5.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.1.0, cubelyr-1.0.2, cvAUC-1.1.4, CVST-0.2-3, CVXR-1.0-11, d3Network-0.5.2.1, dagitty-0.3-4, data.table-1.14.10, data.tree-1.1.0, DataCombine-0.2.21, date-1.2-42, dbarts-0.9-25, DBI-1.1.3, dbplyr-2.4.0, dbscan-1.1-12, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-42, debugme-1.1.0, deldir-2.0-2, dendextend-1.17.1, DEoptim-2.2-8, DEoptimR-1.1-3, DepthProc-2.1.5, Deriv-4.1.3, DescTools-0.99.52, deSolve-1.40, dfidx-0.0-5, DHARMa-0.4.6, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.10, DiceKriging-1.6.0, dichromat-2.0-0.1, dimRed-0.2.6, diptest-0.77-0, DiscriMiner-0.1-29, dismo-1.3-14, distillery-1.2-1, distr-2.9.2, distrEx-2.9.0, distributional-0.3.2, DistributionUtils-0.6-1, diveRsity-1.9.90, dlm-1.1-6, DMCfun-2.0.2, doc2vec-0.2.0, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.6, doSNOW-1.0.20, dotCall64-1.1-1, downloader-0.4, dplyr-1.1.4, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.31, dtangle-2.0.9, dtplyr-1.3.1, DTRreg-2.0, dtw-1.23-1, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-14, earth-5.3.2, EasyABC-1.5.2, ECOSolveR-0.5.5, ellipse-0.5.0, elliptic-1.4-0, emdbook-1.3.13, emmeans-1.8.9, emoa-0.5-0.2, emulator-1.2-21, energy-1.7-11, ENMeval-2.0.4, entropy-1.3.1, EnvStats-2.8.1, epitools-0.5-10.1, ergm-4.5.0, ergm.count-4.1.1, ergm.multi-0.2.0, estimability-1.4.1, EValue-4.1.3, evd-2.3-6.1, Exact-3.2, expm-0.999-8, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.19, extrafontdb-1.0, extRemes-2.1-3, FactoMineR-2.9, FactorCopula-0.9.3, fail-1.3, farver-2.1.1, fastcluster-1.2.3, fastDummies-1.7.3, fasterize-1.0.5, fastICA-1.2-4, fastmatch-1.1-4, fdrtool-1.2.17, feather-0.3.5, ff-4.0.9, fftw-1.0-7, fftwtools-0.9-11, fields-15.2, filehash-2.4-5, finalfit-1.0.7, findpython-1.0.8, fishMod-0.29, fitdistrplus-1.1-11, FKSUM-1.0.1, flashClust-1.01-2, flexclust-1.4-1, flexmix-2.3-19, flextable-0.9.4, fma-2.5, FME-1.3.6.3, fmri-1.9.12, FNN-1.1.3.2, fontBitstreamVera-0.1.1, fontLiberation-0.1.0, fontquiver-0.2.1, forcats-1.0.0, foreach-1.5.2, forecast-8.21.1, foreign-0.8-86, formatR-1.14, Formula-1.2-5, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-10, fpp-0.5, fracdiff-1.5-2, furrr-0.3.1, futile.logger-1.4.3, futile.options-1.0.1, future-1.33.0, future.apply-1.11.0, gam-1.22-3, gamlss-5.4-20, gamlss.data-6.0-2, gamlss.dist-6.1-1, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.5-3, gap.datasets-0.0.6, gapfill-0.9.6-1, gargle-1.5.2, gaussquad-1.0-3, gbm-2.1.8.1, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-3.0.0, gdistance-1.6.4, gdtools-0.3.5, gee-4.13-26, geeM-0.10.1, geepack-1.3.9, geex-1.1.1, geiger-2.0.11, GeneNet-1.2.16, generics-0.1.3, genoPlotR-0.8.11, GenSA-1.1.10.1, geojsonsf-2.0.3, geometries-0.2.3, geometry-0.4.7, getopt-1.20.4, GetoptLong-1.0.5, gfonts-0.2.0, GGally-2.2.0, ggbeeswarm-0.7.2, ggdag-0.2.10, ggdist-3.3.1, ggExtra-0.10.1, ggfan-0.1.3, ggforce-0.4.1, ggformula-0.12.0, ggfun-0.1.3, ggh4x-0.2.6, ggnetwork-0.5.12, ggplot2-3.4.4, ggplotify-0.1.2, ggpubr-0.6.0, ggraph-2.1.0, ggrepel-0.9.4, ggridges-0.5.4, ggsci-3.0.0, ggsignif-0.6.4, ggstance-0.3.6, ggstats-0.5.1, ggvenn-0.1.10, ggvis-0.4.8, GillespieSSA-0.6.2, git2r-0.33.0, GJRM-0.2-6.4, glasso-1.11, gld-2.6.6, gllvm-1.4.3, glmmML-1.1.6, glmmTMB-1.1.8, glmnet-4.1-8, GlobalOptions-0.1.2, globals-0.16.2, gmm-1.8, gmodels-2.18.1.1, gmp-0.7-3, gnumeric-0.7-10, goftest-1.2-3, gomms-1.0, googledrive-2.1.1, googlesheets4-1.1.1, gower-1.0.1, GPArotation-2023.11-1, gplots-3.1.3, graphlayouts-1.0.2, grf-2.3.1, gridBase-0.4-7, gridExtra-2.3, gridGraphics-0.5-1, grImport2-0.3-1, grpreg-3.4.0, GSA-1.03.2, gsalib-2.2.1, gsl-2.1-8, gsw-1.1-1, gt-0.10.0, gtable-0.3.4, gtools-3.9.5, gtsummary-1.7.2, GUTS-1.2.5, gWidgets2-1.0-9, gWidgets2tcltk-1.0-8, GxEScanR-2.0.2, h2o-3.42.0.2, hal9001-0.4.6, haldensify-0.2.3, hardhat-1.3.0, harmony-1.2.0, hash-2.2.6.3, haven-2.5.4, hdf5r-1.3.8, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.3, HGNChelper-0.8.1, HiddenMarkov-1.8-13, Hmisc-5.1-1, hms-1.1.3, Hmsc-3.0-13, htmlTable-2.4.2, httpcode-0.3.0, huge-1.3.5, hunspell-3.0.3, hwriter-1.3.2.1, HWxtest-1.1.9, hypergeo-1.2-13, ica-1.0-3, IDPmisc-1.1.20, idr-1.3, ids-1.0.1, ie2misc-0.9.1, igraph-1.5.1, image.binarization-0.1.3, imager-0.45.2, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.5, infotheo-1.2.0.1, inline-0.3.19, intergraph-2.0-3, interp-1.1-5, interpretR-0.2.5, intrinsicDimension-1.2.0, inum-1.0-5, ipred-0.9-14, irace-3.5, irlba-2.3.5.1, ismev-1.42, Iso-0.0-21, isoband-0.2.7, ISOcodes-2023.12.07, ISOweek-0.6-2, iterators-1.0.14, itertools-0.1-3, JADE-2.0-4, janeaustenr-1.0.0, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-6, jpeg-0.1-10, jsonify-1.2.2, jstable-1.1.3, juicyjuice-0.1.0, kde1d-1.0.5, kedd-1.0.3, kernlab-0.9-32, KernSmooth-2.23-22, kinship2-1.9.6, klaR-1.7-2, KODAMA-2.4, kohonen-3.0.12, ks-1.14.1, labdsv-2.1-0, labeling-0.4.3, labelled-2.12.0, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.3, lassosum-0.4.5, lattice-0.22-5, latticeExtra-0.6-30, lava-1.7.3, lavaan-0.6-16, lazy-1.2-18, lazyeval-0.2.2, LCFdata-2.0, lda-1.4.2, ldbounds-2.0.2, leafem-0.2.3, leaflet-2.2.1, leaflet.providers-2.0.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.4.3.1, lhs-1.1.6, libcoin-1.0-10, limSolve-1.5.7, linkcomm-1.0-14, linprog-0.9-4, liquidSVM-1.2.4, listenv-0.9.0, lme4-1.1-35.1, LMERConvenienceFunctions-3.0, lmerTest-3.1-3, lmom-3.0, Lmoments-1.3-1, lmtest-0.9-40, lobstr-1.1.2, locfdr-1.1-8, locfit-1.5-9.8, logcondens-2.1.8, logger-0.2.2, logistf-1.26.0, logspline-2.1.21, longitudinal-1.1.13, longmemo-1.1-2, loo-2.6.0, lpSolve-5.6.19, lpSolveAPI-5.5.2.0-17.11, lqa-1.0-3, lsei-1.3-0, lslx-0.6.11, lubridate-1.9.3, lwgeom-0.2-13, magic-1.6-1, magick-2.8.1, MALDIquant-1.22.1, manipulateWidget-0.11.1, mapproj-1.2.11, maps-3.4.1.1, maptools-1.1-8, markdown-1.12, MASS-7.3-60, Matching-4.10-14, MatchIt-4.5.5, mathjaxr-1.6-0, matlab-1.0.4, Matrix-1.6-4, matrixcalc-1.0-6, MatrixModels-0.5-3, matrixStats-1.1.0, maxLik-1.5-2, maxlike-0.1-10, maxnet-0.1.4, mboost-2.9-9, mclogit-0.9.6, mclust-6.0.1, mcmc-0.9-8, MCMCpack-1.6-3, mcmcse-1.5-0, mda-0.5-4, medflex-0.6-10, mediation-4.5.0, memisc-0.99.31.6, memuse-4.2-3, MESS-0.5.12, metadat-1.2-0, metafor-4.4-0, MetaUtility-2.1.2, mets-1.3.3, mgcv-1.9-0, mgsub-1.7.3, mhsmm-0.4.21, mi-1.1, mice-3.16.0, miceadds-3.16-18, microbenchmark-1.4.10, MIIVsem-0.5.8, minerva-1.5.10, minpack.lm-1.2-4, minqa-1.2.6, mirt-1.41, misc3d-0.9-1, miscTools-0.6-28, missForest-1.5, mitml-0.4-5, mitools-2.4, mixtools-2.0.0, mlbench-2.1-3.1, mlegp-3.1.9, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.1, mlrMBO-1.1.5.1, mltools-0.3.5, mnormt-2.1.1, ModelMetrics-1.2.2.2, modelr-0.1.11, modeltools-0.2-23, momentfit-0.5, moments-0.14.1, MonteCarlo-1.0.6, mosaicCore-0.9.4.0, mpath-0.4-2.23, mRMRe-2.1.2.1, msm-1.7.1, mstate-0.3.2, multcomp-1.4-25, multcompView-0.1-9, multicool-1.0.0, multipol-1.0-9, munsell-0.5.0, mvabund-4.2.1, mvnfast-0.2.8, mvtnorm-1.2-4, nabor-0.5.0, naniar-1.0.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29.1, ncdf4-1.22, NCmisc-1.2.0, network-1.18.2, networkDynamic-0.11.3, networkLite-1.0.5, neuralnet-1.44.2, neuRosim-0.2-14, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.5, nlme-3.1-164, nloptr-2.0.3, NLP-0.2-1, nlsem-0.8-1, nnet-7.3-19, nnls-1.5, nonnest2-0.5-6, nor1mix-1.3-2, norm-1.0-11.1, nortest-1.0-4, np-0.60-17, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.4.0, oce-1.8-2, OceanView-1.0.6, oddsratio-2.0.1, officer-0.6.3, openair-2.18-0, OpenMx-2.21.11, openxlsx-4.2.5.2, operator.tools-1.6.3, optextras-2019-12.4, optimParallel-1.0-2, optimr-2019-12.16, optimx-2023-10.21, optmatch-0.10.7, optparse-1.7.3, ordinal-2023.12-4, origami-1.0.7, oro.nifti-0.11.4, orthopolynom-1.0-6.1, osqp-0.6.3.2, outliers-0.15, packrat-0.9.2, pacman-0.5.1, pammtools-0.5.92, pamr-1.56.1, pan-1.9, parallelDist-0.2.6, parallelly-1.36.0, parallelMap-1.5.1, ParamHelpers-1.14.1, parsedate-1.3.1, party-1.3-14, partykit-1.2-20, pastecs-1.3.21, patchwork-1.1.3, pbapply-1.7-2, pbivnorm-0.6.0, pbkrtest-0.5.2, PCAmatchR-0.3.3, pcaPP-2.0-4, pdp-0.8.1, PearsonDS-1.3.0, pec-2023.04.12, penalized-0.9-52, penfa-0.1.1, peperr-1.5, PermAlgo-1.2, permute-0.9-7, phangorn-2.11.1, pheatmap-1.0.12, phylobase-0.8.10, phytools-2.0-3, pim-2.0.2, pinfsc50-1.3.0, pixmap-0.4-12, pkgmaker-0.32.10, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.4, plotly-4.10.3, plotmo-3.6.2, plotrix-3.8-4, pls-2.8-3, plyr-1.8.9, PMA-1.2-2, png-0.1-8, PoissonSeq-1.1.2, poLCA-1.6.0.1, polspline-1.1.24, Polychrome-1.5.1, polyclip-1.10-6, polycor-0.8-1, polynom-1.4-1, posterior-1.5.0, ppcor-1.1, prabclus-2.3-3, pracma-2.4.4, PresenceAbsence-1.1.11, preseqR-4.0.0, prettyGraphs-2.1.6, princurve-2.1.6, pROC-1.18.5, prodlim-2023.08.28, profileModel-0.6.1, proftools-0.99-3, progress-1.2.3, progressr-0.14.0, projpred-2.7.0, proto-1.0.0, proxy-0.4-27, proxyC-0.3.4, pryr-0.1.6, pscl-1.5.5.1, pspline-1.0-19, psych-2.3.9, Publish-2023.01.17, pulsar-0.3.11, pvclust-2.2-0, qgam-1.3.4, qgraph-1.9.8, qqman-0.1.9, qrnn-2.1, quadprog-1.5-8, quanteda-3.3.1, quantmod-0.4.25, quantreg-5.97, questionr-0.7.8, QuickJSR-1.0.8, R.cache-0.16.0, R.matlab-3.7.0, R.methodsS3-1.8.2, R.oo-1.25.0, R.rsp-0.45.0, R.utils-2.12.3, R2WinBUGS-2.1-21, random-0.2.6, randomForest-4.7-1.1, randomForestSRC-3.2.3, randtoolbox-2.0.4, rangeModelMetadata-0.1.5, ranger-0.16.0, RANN-2.6.1, rapidjsonr-1.2.0, rARPACK-0.11-0, raster-3.6-26, rasterVis-0.51.6, ratelimitr-0.4.1, RBesT-1.7-2, rbibutils-2.2.16, rbison-1.0.0, Rborist-0.3-5, RCAL-2.0, Rcgmin-2022-4.30, RCircos-1.2.2, RColorBrewer-1.1-3, RcppArmadillo-0.12.6.6.1, RcppEigen-0.3.3.9.4, RcppGSL-0.3.13, RcppParallel-5.1.7, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-2.1.6, RcppTOML-0.2.2, RCurl-1.98-1.13, rda-1.2-1, Rdpack-2.6, rdrop2-0.8.2.1, reactable-0.4.4, reactR-0.5.0, readbitmap-0.1.5, reader-1.0.6, readODS-2.1.0, readr-2.1.4, readxl-1.4.3, rebird-1.3.0, recipes-1.0.8, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.9.5, relsurv-2.2-9, rematch-2.0.0, rentrez-1.2.3, renv-1.0.3, reprex-2.0.2, resample-0.6, reshape-0.8.9, reshape2-1.4.4, reticulate-1.34.0, rex-1.2.1, rgbif-3.7.8, RGCCA-3.0.2, rgdal-1.6-7, rgeos-0.6-4, rgexf-0.16.2, rgl-1.2.8, Rglpk-0.6-5, RhpcBLASctl-0.23-42, ridge-3.3, ridigbio-0.3.7, RInside-0.2.18, rio-1.0.1, riskRegression-2023.09.08, ritis-1.0.0, RItools-0.3-3, rJava-1.0-10, rjson-0.2.21, RJSONIO-1.3-1.9, rle-0.9.2, rlecuyer-0.3-8, rlemon-0.2.1, rlist-0.4.6.2, rmeta-3.0, Rmpfr-0.9-4, rms-6.7-1, RMTstat-0.3.1, rncl-0.8.7, rnetcarto-0.2.6, RNeXML-2.4.11, rngtools-1.5.2, rngWELL-0.10-9, RNifti-1.5.1, robustbase-0.99-1, ROCR-1.0-11, ROI-1.0-1, ROI.plugin.glpk-1.0-0, Rook-1.2, rootSolve-1.8.2.4, roptim-0.1.6, rotl-3.1.0, rpact-3.4.0, rpart-4.1.23, rpf-1.0.14, RPMM-1.25, RPostgreSQL-0.7-5, rrcov-1.7-4, rredlist-0.7.1, rsample-1.2.0, rsconnect-1.1.1, Rserve-1.8-13, RSNNS-0.4-17, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.3.4, Rssa-1.0.5, rstan-2.32.3, rstantools-2.3.1.1, rstatix-0.7.2, rtdists-0.11-5, Rtsne-0.17, Rttf2pt1-1.3.12, RUnit-0.4.32, ruv-0.9.7.1, rvertnet-0.8.2, rvest-1.0.3, rvinecopulib-0.6.3.1.1, Rvmmin-2018-4.17.1, RWeka-0.4-46, RWekajars-3.9.3-2, s2-1.1.4, sampling-2.10, sandwich-3.0-2, SBdecomp-1.2, scales-1.3.0, scam-1.2-14, scatterpie-0.2.1, scatterplot3d-0.3-44, scs-3.2.4, sctransform-0.4.1, SDMTools-1.1-221.2, seewave-2.2.3, segmented-2.0-0, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-6, sendmailR-1.4-0, sensemakr-0.1.4, sentometrics-1.0.0, seqinr-4.2-36, servr-0.27, setRNG-2022.4-1, sf-1.0-14, sfheaders-0.4.3, sfsmisc-1.1-16, shadowtext-0.1.2, shape-1.4.6, shapefiles-0.7.2, shinycssloaders-1.0.0, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-1.8-0, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.5, slam-0.1-50, slider-0.3.1, sm-2.2-5.7.1, smoof-1.6.0.3, smoother-1.1, sn-2.1.1, sna-2.7-2, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.1, snowfall-1.84-6.3, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sp-2.1-2, spaa-0.2.2, spam-2.10-0, spaMM-4.4.0, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-17, spatstat-3.0-7, spatstat.core-2.4-4, spatstat.data-3.0-3, spatstat.explore-3.2-5, spatstat.geom-3.2-7, spatstat.linnet-3.1-3, spatstat.model-3.2-8, spatstat.random-3.2-2, spatstat.sparse-3.0-3, spatstat.utils-3.0-4, spData-2.3.0, spdep-1.3-1, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.2, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.26.28, stargazer-5.2.3, stars-0.6-4, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.5.0, statnet-2019.6, statnet.common-4.9.0, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.12, strucchange-1.5-3, styler-1.10.2, subplex-1.8, SuperLearner-2.0-28.1, SuppDists-1.1-9.7, survey-4.2-1, survival-3.5-7, survivalROC-1.0.3.1, svd-0.5.5, svglite-2.1.3, svUnit-1.0.6, swagger-3.33.1, symmoments-1.2.1, tableone-0.13.2, tabletools-0.1.0, tau-0.0-25, taxize-0.9.100, tcltk2-1.2-11, tclust-1.5-5, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.2.0, terra-1.7-55, testit-0.13, textcat-1.0-8, textplot-0.2.2, TFisher-0.2.0, TH.data-1.1-2, threejs-0.3.3, tictoc-1.2, tidybayes-3.0.6, tidygraph-1.2.3, tidyr-1.3.0, tidyselect-1.2.0, tidytext-0.4.1, tidytree-0.4.5, tidyverse-2.0.0, tiff-0.1-12, timechange-0.2.0, timeDate-4022.108, timereg-2.0.5, tkrplot-0.0-27, tm-0.7-11, tmap-3.3-4, tmaptools-3.1-1, TMB-1.9.9, tmle-2.0.0, tmvnsim-1.0-2, tmvtnorm-1.6, tokenizers-0.3.0, topicmodels-0.2-15, TraMineR-2.2-8, tree-1.0-43, triebeard-0.4.1, trimcluster-0.1-5, tripack-1.3-9.1, TruncatedNormal-2.2.2, truncnorm-1.0-9, trust-0.1-8, tseries-0.10-55, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.4, tuneR-1.4.6, twang-2.6, tweedie-2.3.5, tweenr-2.0.2, tzdb-0.4.0, ucminf-1.2.0, udpipe-0.8.11, umap-0.2.10.0, unbalanced-2.0, unikn-0.9.0, uniqueAtomMat-0.1-3-2, units-0.8-5, unmarked-1.3.2, UpSetR-1.4.0, urca-1.3-3, urltools-1.7.3, uroot-2.1-2, uuid-1.1-1, V8-4.4.1, varhandle-2.0.6, vcd-1.4-11, vcfR-1.15.0, vegan-2.6-4, VennDiagram-1.7.3, VGAM-1.1-9, VIM-6.2.2, VineCopula-2.5.0, vioplot-0.4.0, vipor-0.4.5, viridis-0.6.4, viridisLite-0.4.2, visdat-0.6.0, visNetwork-2.1.2, vroom-1.6.5, VSURF-1.2.0, warp-0.2.1, waveslim-1.8.4, wdm-0.2.4, webshot-0.5.5, webutils-1.2.0, weights-1.0.4, WeightSVM-1.7-13, wellknown-0.7.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, wk-0.9.1, word2vec-0.4.0, wordcloud-2.6, worrms-0.4.3, writexl-1.4.2, WriteXLS-6.4.0, xgboost-1.7.6.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.16, xts-0.13.1, yaImpute-1.0-33, yulab.utils-0.1.0, zeallot-0.1.0, zoo-1.8-12"}}, "description": "Bundle of R packages from CRAN", "homepage": "https://www.r-project.org/"}, "R-INLA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"R-INLA/24.01.18-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "R-INLA/21.05.02-foss-2020b-R-4.0.4": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "R-INLA is a package in R that do approximate Bayesian inference for Latent Gaussian Models.", "homepage": "https://www.r-inla.org"}, "R": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"R/4.0.3-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.13, assertive-0.3-6, assertive.base-0.0-7, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5, awsMethods-1.1-1, b-a, backports-1.2.0, bacr-1.0.1, bartMachine-1.2.5.1, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.7.2, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, betareg-3.1-3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.5.3, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-12, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-25, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.0, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.2, bst-0.3-22, c-o, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.0, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.11, circular-0.4-93, class-7.3-17, classInt-0.4-3, cli-2.1.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.5, clusterRepro-0.9, clustree-0.4.3, clValid-0.6-9, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.3-1, colorspace-1.4-1, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-0, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-3, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.0, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.4, crayon-1.3.4, crosstalk-1.1.0.1, crul-1.0.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.13.2, data.tree-1.0.0, dbarts-0.9-18, DBI-1.1.0, dbplyr-2.0.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-2, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.1, desc-1.2.0, DescTools-0.99.38, deSolve-1.28, devtools-2.3.2, dfidx-0.0-3, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.2, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.1, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-0, downloader-0.4, dplyr-1.0.2, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.16, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-5, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-12, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-4.0.4, ffbase-0.13.1, fftw-1.0-6, fftwtools-0.9-9, fields-11.6, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.1-1, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.0, foreach-1.5.1, forecast-8.13, foreign-0.8-80, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-8, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.20.1, future.apply-1.6.0, g-r, g-r, g-r, gam-1.20, gamlss-5.2-0, gamlss.data-5.1-4, gamlss.dist-5.1-7, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-1, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-1.0.4, GGally-2.0.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.2, ggnetwork-0.5.8, ggplot2-3.3.2, ggpubr-0.4.0, ggraph-2.0.3, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.6, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.27.1, glasso-1.11, gld-2.6.2, gllvm-1.2.2, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.0-2, GlobalOptions-0.1.2, globals-0.13.1, glue-1.4.2, gmm-1.6-5, gmodels-2.18.1, gmp-0.6-1, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.0, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gtable-0.3.0, gtools-3.8.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.4-1, hms-0.5.3, htmlTable-2.1.0, htmltools-0.5.0, htmlwidgets-1.5.2, httpcode-0.3.0, httpuv-1.5.4, httr-1.4.2, huge-1.3.4.1, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.3, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.16, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.2, ISOcodes-2020.03.16, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jsonlite-1.7.1, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.30, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.4.2, labelled-2.7.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.4, lhs-1.1.1, libcoin-1.0-6, lifecycle-0.2.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-25, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.3.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.9, m-e, magic-1.5-9, magick-2.5.1, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.57.0, maxLik-1.4-4, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-3, mclust-5.4.6, mcmc-0.9-7, MCMCpack-1.4-9, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-33, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.11.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mitools-2.4, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.8, mlogit-1.1-1, mlr-2.18.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.3-26, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-14, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-150, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-14, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pan-1.6, parallelly-1.21.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-5, partykit-1.2-10, pastecs-1.3.21, patchwork-1.0.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.4-8.6, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.4.6, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-11, pkgbuild-1.1.0, pkgconfig-2.0.3, pkgload-1.1.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2.1, plotmo-3.6.0, plotrix-3.7-8, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.2, processx-3.4.4, prodlim-2019.11.13, profileModel-0.6.0, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.1.1, proto-1.0.0, proxy-0.4-24, pryr-0.1.4, ps-1.4.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.9, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.17, quantreg-5.75, questionr-0.7.3, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.3-13, rasterVis-0.49, rbibutils-1.4, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.5, RcppArmadillo-0.10.1.0.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.8, RcppParallel-5.0.2, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.0, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.14, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.54, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.16, ritis-0.9.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.8, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.5, rmeta-3.0, Rmpi-0.6-9, rms-6.0-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-6, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-1.3-2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.1, Rssa-1.0.2, rstan-2.21.2, rstantools-2.1.1, rstatix-0.6.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-0.3.6, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-3.0-0, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.1, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-0, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-4, servr-0.20, sessioninfo-1.1.1, setRNG-2013.9-1, sfsmisc-1.1-7, shape-1.4.5, shapefiles-0.7, shiny-1.5.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.1.2, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-4, spaa-0.2.2, spam-2.5-1, spaMM-3.5.0, SparseM-1.78, SPAtest-3.1.2, spatial-7.3-12, spatstat-1.64-1, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.5, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-6, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.0, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.1, tergm-3.7.0, testit-0.12, testthat-3.0.0, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.0.4, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.2, tidyselect-1.1.0, tidytext-0.2.6, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.8, tinytex-0.27, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.18, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-11, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-7, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-1.6.3, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-4, VIM-6.0.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.2, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.3.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.0.0, xfun-0.19, xgboost-1.4.1.1, xlsx-0.6.4.2, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-8"}, "R/4.1.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.5, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.64, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.4.0, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-2, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.3-15, blob-1.2.1, BMA-3.18.15, bmp-0.3, bnlearn-4.6.1, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.2, bridgedist-0.1.0, bridgesampling-1.1-2, brio-1.1.2, brms-2.15.0, Brobdingnag-1.2-6, broom-0.7.6, broom.helpers-1.3.0, broom.mixed-0.2.6, bslib-0.2.5.1, bst-0.3-23, cachem-1.0.5, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.7.0, car-3.0-10, carData-3.0-4, caret-6.0-88, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-19, classInt-0.4-3, cli-2.5.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-59, cluster-2.1.2, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, collapse-1.6.5, colorspace-2.0-1, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compiler, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.88, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.7, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.2, cubelyr-1.0.1, curl-4.3.1, cvAUC-1.1.0, CVST-0.2-2, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, datasets, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.1, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.15.1, DEoptim-2.2-6, DEoptimR-1.0-9, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.41, deSolve-1.28, devtools-2.4.1, dfidx-0.0-4, DHARMa-0.4.1, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.4, digest-0.6.27, dimRed-0.2.3, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.6, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.18, dtangle-2.0.9, dtplyr-1.1.0, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-7, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.2, emdbook-1.3.12, emulator-1.2-21, energy-1.7-8, ENMeval-2.0.0, entropy-1.3.0, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1-1, FactoMineR-2.4, fail-1.3, fansi-0.5.0, farver-2.1.0, fastcluster-1.2.3, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-12.3, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-5, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.15, foreign-0.8-81, formatR-1.11, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-1, gapfill-0.9.6-1, gargle-1.1.0, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geex-1.0.12, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geojsonsf-2.0.1, geometries-0.2.0, geometry-0.4.5, gert-1.3.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.3.0, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, googledrive-1.0.1, googlesheets4-0.3.0, gower-0.2.2, gplots-3.1.1, graphics, graphlayouts-0.7.1, grDevices, grf-2.0.0, grid, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.1, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.1.3, hal9001-0.2.7, haven-2.4.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.5-0, hms-1.1.0, htmlTable-2.2.1, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.6.1, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ids-1.0.1, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.8, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-11, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.7.2, jstable-1.0.2, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-20, klaR-0.6-15, knitr-1.33, KODAMA-1.6, kohonen-3.0.10, ks-1.13.1, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.2.0, lattice-0.20-44, latticeExtra-0.6-29, lava-1.6.9, lavaan-0.6-8, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leafem-0.1.6, leaflet-2.0.4.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.8, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-27, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, lwgeom-0.2-7, magic-1.5-9, magick-2.7.2, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.11.0, maps-3.3.0, maptools-1.1-1, markdown-1.1, MASS-7.3-54, Matching-4.9-9, MatchIt-4.2.0, mathjaxr-1.4-0, Matrix-1.3-4, matrixcalc-1.0-4, MatrixModels-0.5-0, matrixStats-0.59.0, maxLik-1.4-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-5, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-3.0-1, methods, mgcv-1.8-36, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14, mpath-0.4-2.19, mRMRe-2.1.1, msm-1.6.8, multcomp-1.4-17, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.12, mvnfast-0.2.7, mvtnorm-1.1-1, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-16, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-9.5, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.4-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.4, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-14, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, packrat-0.6.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallel, parallelly-1.25.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.1, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-74, penalized-0.9-51, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.7.0, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-80, pillar-1.6.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.1, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.2, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.5.2, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.3, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.3, qgraph-1.6.9, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.11.0, ranger-0.12.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.4-10, rasterVis-0.50.2, ratelimitr-0.4.1, rbibutils-2.1.1, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.5.0.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.1.4, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.3, rda-1.0.2-2.1, Rdpack-2.1.2, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.16, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.0, rentrez-1.2.3, reprex-2.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.20, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.106.8, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-1.0-4, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.11, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.8, rmeta-3.0, Rmpi-0.6-9.1, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-8, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.18, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.7, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvest-1.0.0, Rvmmin-2018-4.17.1, RWeka-0.4-43, RWekajars-3.9.3-2, sampling-2.9, sandwich-3.0-1, sass-0.4.0, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-4, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.22, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-8, sfheaders-0.4.0, sfsmisc-1.1-11, shape-1.4.6, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-2.0.0, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.8.0, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-14, spatstat-2.1-0, spatstat.core-2.1-2, spatstat.data-2.1-0, spatstat.geom-2.1-0, spatstat.linnet-2.1-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0, spData-0.3.8, splines, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, stars-0.5-3, startupmsg-0.9.6, StatMatch-1.4.0, statmod-1.4.36, statnet-2019.6, statnet.common-4.4.1, stats, stats4, stdReg-3.4.1, stopwords-2.2, stringdist-0.9.6.3, stringi-1.6.2, stringr-1.4.0, strucchange-1.5-2, styler-1.4.1, subplex-1.6, SuperLearner-2.0-28, SuppDists-1.1-9.5, survey-4.0, survival-3.2-11, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, tableone-0.12.0, tabletools-0.1.0, taxize-0.9.99, tcltk, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.2-10, testit-0.13, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.2, tictoc-1.0.1, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.1, tidytext-0.3.1, tidyverse-1.3.1, tiff-0.1-8, timeDate-3043.102, timereg-2.0.0, tinytex-0.32, tkrplot-0.0-25, tm-0.7-8, tmap-3.3-2, tmaptools-3.1-1, TMB-1.7.20, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, tools, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.3, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.2, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-1, unmarked-1.1.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.2.1, utils, uuid-0.1-4, V8-3.4.2, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.8, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.6, vipor-0.4.5, viridis-0.6.1, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.1.5, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.2, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.23, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.6, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.2.0, zoo-1.8-9"}, "R/4.1.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-18, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.2, alabama-2015.3-1, AlgDesign-1.2.0, alluvial-0.1-2, AnalyzeFMRI-1.1-24, animation-2.7, aod-1.3.1, apcluster-1.4.9, ape-5.5, argparse-2.1.2, arm-1.12-2, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-8, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.3.0, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, BayesLogit-2.1, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.1, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.24, BCEE-1.3.0, BDgraph-2.64, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.4.0, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.5, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-2, biom-0.3.12, biomod2-3.5.1, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.3-17, blob-1.2.2, BMA-3.18.15, bmp-0.3, bnlearn-4.7, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.2, bridgedist-0.1.0, bridgesampling-1.1-2, brio-1.1.2, brms-2.16.1, Brobdingnag-1.2-6, broom-0.7.10, broom.helpers-1.4.0, broom.mixed-0.2.7, bslib-0.3.1, bst-0.3-23, c-o, cachem-1.0.6, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.7.0, car-3.0-11, carData-3.0-4, caret-6.0-90, catlearn-0.8, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-56, circlize-0.4.13, circular-0.4-93, class-7.3-19, classInt-0.4-3, cli-3.1.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-60, cluster-2.1.2, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cmprsk-2.2-11, cNORM-2.1.0, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-2, collapse-1.6.5, colorspace-2.0-2, colourpicker-1.1.1, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-2, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.2.0, copCAR-2.0-4, copula-1.0-1, corpcor-1.6.10, corrplot-0.90, covr-3.5.1, CovSel-1.2.1, covsim-0.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.4.0, crayon-1.4.2, credentials-1.3.1, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.2, cubelyr-1.0.1, curl-4.3.2, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.2, data.tree-1.0.0, DataCombine-0.2.21, date-1.2-39, dbarts-0.9-20, DBI-1.1.1, dbplyr-2.1.1, dcurver-0.9.2, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-1.0-6, dendextend-1.15.2, DEoptim-2.2-6, DEoptimR-1.0-9, Deriv-4.1.3, desc-1.4.0, DescTools-0.99.43, deSolve-1.30, devtools-2.4.2, dfidx-0.0-4, DHARMa-0.4.4, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.5, digest-0.6.28, dimRed-0.2.3, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-5, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, distributional-0.2.2, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-2.0.2, docstring-1.0.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.7, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.19, dtangle-2.0.9, dtplyr-1.1.0, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-9, earth-5.3.1, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.2, emdbook-1.3.12, emulator-1.2-21, energy-1.7-8, ENMeval-2.0.1, entropy-1.3.1, EnvStats-2.4.0, ergm-4.1.2, ergm.count-4.0.2, evaluate-0.14, EValue-4.1.2, evd-2.3-3, Exact-3.0, expm-0.999-6, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1-1, FactoMineR-2.4, FactorCopula-0.8, fail-1.3, fansi-0.5.0, farver-2.1.0, fastcluster-1.2.3, fasterize-1.0.3, fastICA-1.2-3, fastmap-1.1.0, fastmatch-1.1-3, fdrtool-1.2.16, feather-0.3.5, ff-4.0.5, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-13.3, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-6, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.2, fmri-1.9.6, FNN-1.1.3, fontawesome-0.2.2, forcats-0.5.1, foreach-1.5.1, forecast-8.15, foreign-0.8-81, formatR-1.11, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.23.0, future.apply-1.8.1, g-r, g-r, g-r, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-1, gapfill-0.9.6-1, gargle-1.2.0, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geex-1.0.12, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.1, genoPlotR-0.8.11, GenSA-1.1.7, geojsonsf-2.0.1, geometries-0.2.0, geometry-0.4.5, gert-1.4.1, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.2, ggbeeswarm-0.6.0, ggdag-0.2.4, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.10, ggplot2-3.3.5, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.3, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, GJRM-0.2-5.1, glasso-1.11, gld-2.6.2, gllvm-1.3.1, glmmML-1.1.1, glmmTMB-1.1.2.3, glmnet-4.1-2, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.0, gower-0.2.2, GPArotation-2014.11-1, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.2, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-7, gsw-1.0-6, gt-0.3.1, gtable-0.3.0, gtools-3.9.2, gtsummary-1.5.0, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.34.0.3, hal9001-0.4.1, harmony-0.1.0, hash-2.2.6.1, haven-2.4.3, hdf5r-1.3.4, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.6-0, hms-1.1.1, Hmsc-3.0-11, htmlTable-2.3.0, htmltools-0.5.2, htmlwidgets-1.5.4, httpcode-0.3.0, httpuv-1.6.3, httr-1.4.2, huge-1.3.5, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ids-1.0.1, ie2misc-0.8.6, igraph-1.2.7, image.binarization-0.1.2, imager-0.42.10, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-12, irace-3.4.1, irlba-2.3.3, ismev-1.42, Iso-0.0-18.1, isoband-0.2.5, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-9, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.7.2, jstable-1.0.7, kde1d-1.0.3, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-20, klaR-0.6-15, knitr-1.36, KODAMA-1.8, kohonen-3.0.10, ks-1.13.2, labdsv-2.0-1, labeling-0.4.2, labelled-2.9.0, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.2, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-29, lava-1.6.10, lavaan-0.6-9, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, ldbounds-1.1-1.1, leafem-0.1.6, leaflet-2.0.4.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.9, lhs-1.1.3, libcoin-1.0-9, lifecycle-1.0.1, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-27.1, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, lobstr-1.1.1, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.6, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lpSolveAPI-5.5.2.0-17.7, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.8.0, lwgeom-0.2-8, m-e, magic-1.5-9, magick-2.7.3, magrittr-2.0.1, MALDIquant-1.20, manipulateWidget-0.11.1, mapproj-1.2.7, maps-3.4.0, maptools-1.1-2, markdown-1.1, MASS-7.3-54, Matching-4.9-11, MatchIt-4.3.0, mathjaxr-1.4-0, matlab-1.0.2, Matrix-1.3-4, matrixcalc-1.0-5, MatrixModels-0.5-0, matrixStats-0.61.0, maxLik-1.5-2, maxlike-0.1-8, maxnet-0.1.4, mboost-2.9-5, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.6-0, mcmcse-1.5-0, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.2-1, metadat-1.0-0, metafor-3.0-2, MetaUtility-2.1.2, mets-1.2.9, mgcv-1.8-38, mgsub-1.7.3, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, mirt-1.35.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.4, mitml-0.4-3, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14, MonteCarlo-1.0.6, mpath-0.4-2.19, mRMRe-2.1.2, msm-1.6.9, mstate-0.3.2, multcomp-1.4-17, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.12, mvnfast-0.2.7, mvtnorm-1.1-3, nabor-0.5.0, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, ncdf4-1.17, NCmisc-1.1.6, network-1.17.1, networkDynamic-0.11.0, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-153, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-16, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-9.5, nortest-1.0-4, np-0.60-11, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.3.2, oce-1.4-0, OceanView-1.0.6, oddsratio-2.0.1, openair-2.8-6, OpenMx-2.19.8, openssl-1.4.5, openxlsx-4.2.4, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2021-10.12, optmatch-0.9-15, optparse-1.7.1, ordinal-2019.12-10, origami-1.0.5, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.7.0, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallelly-1.28.1, parallelMap-1.5.1, ParamHelpers-1.14, parsedate-1.2.1, party-1.3-9, partykit-1.2-15, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.5-0, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-74, pdp-0.7.0, PearsonDS-1.2.1, pec-2022.03.06, penalized-0.9-51, penfa-0.1.1, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.7.1, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-90, pillar-1.6.4, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.3, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.2, plotly-4.10.0, plotmo-3.6.1, plotrix-3.8-2, pls-2.8-0, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, posterior-1.1.0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, pROC-1.18.0, processx-3.5.2, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.9.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-26, pryr-0.1.5, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.9, Publish-2020.12.23, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.3, qgraph-1.9, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.86, questionr-0.7.5, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.11.0, R6-2.5.1, randomForest-4.6-14, randomForestSRC-2.13.0, randtoolbox-1.31.1, rangeModelMetadata-0.1.4, ranger-0.13.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.5-2, rasterVis-0.51.0, ratelimitr-0.4.1, rbibutils-2.2.4, rbison-1.0.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.4.0, RColorBrewer-1.1-2, Rcpp-1.0.7, RcppArmadillo-0.10.7.0.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.10, RcppParallel-5.1.4, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-1.0.0, RCurl-1.98-1.5, rda-1.0.2-2.1, Rdpack-2.1.2, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-2.0.2, readxl-1.3.1, rebird-1.3.0, recipes-0.1.17, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, relsurv-2.2-7, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.1, rentrez-1.2.3, renv-0.15.5, reprex-2.0.1, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.22, rex-1.2.0, rgbif-3.6.0, RGCCA-2.1.2, rgdal-1.5-27, rgeos-0.5-8, rgexf-0.16.2, rgl-0.107.14, Rglpk-0.6-4, RhpcBLASctl-0.21-247.1, ridigbio-0.3.5, RInside-0.2.16, rio-0.5.27, riskRegression-2022.03.09, ritis-1.0.0, RItools-0.1-17, rJava-1.0-5, rjson-0.2.20, RJSONIO-1.3-1.6, rlang-0.4.12, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.11, rmeta-3.0, Rmpfr-0.8-7, Rmpi-0.6-9.2, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5.2, rngWELL-0.10-7, robustbase-0.93-9, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.3, rotl-3.0.11, roxygen2-7.1.2, rpact-3.2.1, rpart-4.1-15, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.2, rrcov-1.6-0, rredlist-0.7.0, rsconnect-0.8.24, Rserve-1.7-3.1, RSNNS-0.4-14, Rsolnp-1.16, RSQLite-2.2.8, Rssa-1.0.4, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.9, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvertnet-0.8.2, rvest-1.0.2, rvinecopulib-0.6.1.1.1, Rvmmin-2018-4.17.1, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, s2-1.0.7, sampling-2.9, sandwich-3.0-1, sass-0.4.0, SBdecomp-1.1, scales-1.1.1, scam-1.2-12, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.8, segmented-1.3-4, selectr-0.4-2, sem-3.1-13, semPLS-1.0-10, semTools-0.5-5, sendmailR-1.2-1, sensemakr-0.1.4, seqinr-4.2-8, servr-0.23, sessioninfo-1.2.0, setRNG-2013.9-1, sf-1.0-3, sfheaders-0.4.0, sfsmisc-1.1-12, shape-1.4.6, shapefiles-0.7, shiny-1.7.1, shinydashboard-0.7.2, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.2, simex-1.8, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.7, smoother-1.1, sn-2.0.0, sna-2.6, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.7-0, spaMM-3.9.13, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-14, spatstat-2.2-0, spatstat.core-2.3-0, spatstat.data-2.1-0, spatstat.geom-2.3-0, spatstat.linnet-2.3-0, spatstat.sparse-2.0-0, spatstat.utils-2.2-0, spData-2.0.1, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.0, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, stars-0.5-3, startupmsg-0.9.6, StatMatch-1.4.0, statmod-1.4.36, statnet-2019.6, statnet.common-4.5.0, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.8, stringi-1.7.5, stringr-1.4.0, strucchange-1.5-2, styler-1.6.2, subplex-1.6, SuperLearner-2.0-28, SuppDists-1.1-9.5, survey-4.1-1, survival-3.2-13, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.13.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.0.2, terra-1.4-11, testit-0.13, testthat-3.1.0, TFisher-0.2.0, TH.data-1.1-0, threejs-0.3.3, tibble-3.1.5, tictoc-1.0.1, tidygraph-1.2.0, tidyr-1.1.4, tidyselect-1.1.1, tidytext-0.3.2, tidyverse-1.3.1, tiff-0.1-8, timeDate-3043.102, timereg-2.0.1, tinytex-0.34, tkrplot-0.0-26, tm-0.7-8, tmap-3.3-2, tmaptools-3.1-1, TMB-1.7.22, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-2, tree-1.0-41, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.4, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3.1, twang-2.5, tweedie-2.3.3, tweenr-1.0.2, tzdb-0.2.0, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-2, unmarked-1.1.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.1.3, utf8-1.2.2, uuid-1.0-2, V8-3.4.2, vcd-1.4-9, vcfR-1.12.0, vctrs-0.3.8, vegan-2.5-7, VennDiagram-1.7.0, VGAM-1.1-5, VIM-6.1.1, VineCopula-2.4.3, vioplot-0.3.7, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.1.0, vroom-1.5.5, VSURF-1.1.0, waldo-0.3.1, waveslim-1.8.2, wdm-0.2.2, webshot-0.5.2, WeightSVM-1.7-9, wellknown-0.7.4, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.1, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.2, wk-0.5.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.27, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.8, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.2.0, zoo-1.8-9"}, "R/4.2.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-19, ADGofTest-0.3, admisc-0.26, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-3.3, alabama-2022.4-1, AlgDesign-1.2.0, alluvial-0.1-2, animation-2.7, aod-1.3.2, apcluster-1.4.9, ape-5.6-2, argparse-2.1.5, arm-1.12-2, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-10, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.4.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.7, BayesLogit-2.1, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.9.0, BB-2019.10-1, BBmisc-1.12, bbmle-1.0.24, BCEE-1.3.0, BDgraph-2.66, bdsmatrix-1.3-4, beanplot-1.3.1, beeswarm-0.4.0, betareg-3.1-4, BH-1.78.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.5, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-3, biom-0.3.12, biomod2-3.5.1, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.4-1, blob-1.2.3, BMA-3.18.17, bmp-0.3, bnlearn-4.7.1, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-7, brglm-0.7.2, bridgedist-0.1.1, bridgesampling-1.1-2, brio-1.1.3, brms-2.17.0, Brobdingnag-1.2-7, broom-0.8.0, broom.helpers-1.7.0, broom.mixed-0.2.9.4, bslib-0.3.1, bst-0.3-23, c-o, cachem-1.0.6, Cairo-1.5-15, calibrate-1.7.7, callr-3.7.0, car-3.0-12, carData-3.0-5, caret-6.0-92, catlearn-0.9.1, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.1.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-56, circlize-0.4.14, circular-0.4-94.1, class-7.3-20, classInt-0.4-3, cli-3.3.0, clipr-0.8.0, clisymbols-1.2.0, clue-0.3-60, cluster-2.1.3, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.4, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.1, cobalt-4.3.2, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-2, collapse-1.7.6, colorspace-2.0-3, colourpicker-1.1.1, combinat-0.0-8, ComICS-1.0.4, commonmark-1.8.0, compositions-2.0-4, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.3.0, contfrac-1.1-12, copCAR-2.0-4, copula-1.0-1, corpcor-1.6.10, corrplot-0.92, covr-3.5.1, CovSel-1.2.1, covsim-0.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.4.2, crayon-1.5.1, credentials-1.3.2, crosstalk-1.2.0, crul-1.2.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.4, cubelyr-1.0.1, curl-4.3.2, cvAUC-1.1.4, CVST-0.2-3, d-a, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.2, data.tree-1.0.0, DataCombine-0.2.21, date-1.2-39, dbarts-0.9-22, DBI-1.1.2, dbplyr-2.1.1, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-39, debugme-1.1.0, deldir-1.0-6, dendextend-1.15.2, DEoptim-2.2-6, DEoptimR-1.0-11, Deriv-4.1.3, desc-1.4.1, DescTools-0.99.44, deSolve-1.32, devtools-2.4.3, dfidx-0.0-4, DHARMa-0.4.5, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.9, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.5, digest-0.6.29, dimRed-0.2.5, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-5, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, distributional-0.3.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-2.0.2, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.2, doSNOW-1.0.20, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.8, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.22, dtangle-2.0.9, dtplyr-1.2.1, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-9, earth-5.3.1, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.2, elliptic-1.4-0, emdbook-1.3.12, emulator-1.2-21, energy-1.7-10, ENMeval-2.0.3, entropy-1.3.1, EnvStats-2.7.0, ergm-4.1.2, ergm.count-4.0.2, evaluate-0.15, EValue-4.1.3, evd-2.3-6, Exact-3.1, expm-0.999-6, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.18, extrafontdb-1.0, extRemes-2.1-1, FactoMineR-2.4, FactorCopula-0.8, fail-1.3, fansi-1.0.3, farver-2.1.0, fastcluster-1.2.3, fasterize-1.0.3, fastICA-1.2-3, fastmap-1.1.0, fastmatch-1.1-3, fdrtool-1.2.17, feather-0.3.5, ff-4.0.5, ffbase-0.13.3, fftw-1.0-7, fftwtools-0.9-11, fields-13.3, filehash-2.4-3, finalfit-1.0.4, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-8, flashClust-1.01-2, flexclust-1.4-1, flexmix-2.3-17, fma-2.4, FME-1.3.6.2, fmri-1.9.6, FNN-1.1.3, fontawesome-0.2.2, forcats-0.5.1, foreach-1.5.2, forecast-8.16, foreign-0.8-82, formatR-1.12, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.2, furrr-0.2.3, futile.logger-1.4.3, futile.options-1.0.1, future-1.25.0, future.apply-1.9.0, g-r, g-r, g-r, gam-1.20.1, gamlss-5.4-3, gamlss.data-6.0-2, gamlss.dist-6.0-3, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-1, gapfill-0.9.6-1, gargle-1.2.0, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-22, geeM-0.10.1, geepack-1.3.3, geex-1.0.12, geiger-2.0.7, GeneNet-1.2.16, generics-0.1.2, genoPlotR-0.8.11, GenSA-1.1.7, geojsonsf-2.0.2, geometries-0.2.0, geometry-0.4.6, gert-1.6.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.2, ggbeeswarm-0.6.0, ggdag-0.2.4, ggExtra-0.10.0, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.10, ggplot2-3.3.5, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.3, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.2, git2r-0.30.1, gitcreds-0.1.1, GJRM-0.2-6, glasso-1.11, gld-2.6.4, gllvm-1.3.1, glmmML-1.1.2, glmmTMB-1.1.3, glmnet-4.1-4, GlobalOptions-0.1.2, globals-0.14.0, glue-1.6.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-5, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.0, gower-1.0.0, GPArotation-2022.4-1, gplots-3.1.3, graphlayouts-0.8.0, grf-2.1.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.2, gsalib-2.1, gsl-2.1-7.1, gsw-1.0-6, gt-0.5.0, gtable-0.3.0, gtools-3.9.2, gtsummary-1.6.0, GUTS-1.2.3, gWidgets2-1.0-9, gWidgets2tcltk-1.0-8, GxEScanR-2.0.2, h2o-3.36.0.4, hal9001-0.4.3, hardhat-0.2.0, harmony-0.1.0, hash-2.2.6.2, haven-2.5.0, hdf5r-1.3.5, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.7-0, hms-1.1.1, Hmsc-3.0-11, htmlTable-2.4.0, htmltools-0.5.2, htmlwidgets-1.5.4, httpcode-0.3.0, httpuv-1.6.5, httr-1.4.2, huge-1.3.5, hunspell-3.0.1, hwriter-1.3.2.1, HWxtest-1.1.9, hypergeo-1.2-13, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ids-1.0.1, ie2misc-0.8.8, igraph-1.3.1, image.binarization-0.1.2, imager-0.42.13, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0.1, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-12, irace-3.4.1, irlba-2.3.5, ismev-1.42, Iso-0.0-18.1, isoband-0.2.5, ISOcodes-2022.01.10, iterators-1.0.14, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-3, jpeg-0.1-9, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.8.0, jstable-1.0.7, kde1d-1.0.4, kedd-1.0.3, kernlab-0.9-30, KernSmooth-2.23-20, klaR-1.7-0, knitr-1.38, KODAMA-1.9, kohonen-3.0.11, ks-1.13.5, labdsv-2.0-1, labeling-0.4.2, labelled-2.9.0, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.3, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-29, lava-1.6.10, lavaan-0.6-11, lazy-1.2-17, lazyeval-0.2.2, lda-1.4.2, ldbounds-2.0.0, leafem-0.2.0, leaflet-2.1.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.9, lhs-1.1.5, libcoin-1.0-9, lifecycle-1.0.1, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-4, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-29, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-40, lobstr-1.1.1, locfdr-1.1-8, locfit-1.5-9.5, logcondens-2.1.6, logistf-1.24.1, logspline-2.1.17, longitudinal-1.1.13, longmemo-1.1-2, loo-2.5.1, lpSolve-5.6.15, lpSolveAPI-5.5.2.0-17.7, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.8.0, lwgeom-0.2-8, m-e, magic-1.6-0, magick-2.7.3, magrittr-2.0.3, MALDIquant-1.21, manipulateWidget-0.11.1, mapproj-1.2.8, maps-3.4.0, maptools-1.1-4, markdown-1.1, MASS-7.3-57, Matching-4.10-2, MatchIt-4.3.4, mathjaxr-1.6-0, matlab-1.0.2, Matrix-1.4-1, matrixcalc-1.0-5, MatrixModels-0.5-0, matrixStats-0.62.0, maxLik-1.5-2, maxlike-0.1-8, maxnet-0.1.4, mboost-2.9-6, mclust-5.4.9, mcmc-0.9-7, MCMCpack-1.6-3, mcmcse-1.5-0, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.1, memuse-4.2-1, metadat-1.2-0, metafor-3.4-0, MetaUtility-2.1.2, mets-1.2.9, mgcv-1.8-40, mgsub-1.7.3, mhsmm-0.4.16, mi-1.0, mice-3.14.0, miceadds-3.12-26, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-2, minqa-1.2.4, mirt-1.36.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.5, mitml-0.4-3, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.9, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14, MonteCarlo-1.0.6, mpath-0.4-2.22, mRMRe-2.1.2, msm-1.6.9, mstate-0.3.2, multcomp-1.4-18, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.2.1, mvnfast-0.2.7, mvtnorm-1.1-3, nabor-0.5.0, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, ncdf4-1.19, NCmisc-1.1.6, network-1.17.1, networkDynamic-0.11.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-157, nloptr-2.0.0, NLP-0.2-1, nlsem-0.8, nnet-7.3-17, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-10.0, nortest-1.0-4, np-0.60-11, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.3.2, oce-1.7-2, OceanView-1.0.6, oddsratio-2.0.1, openair-2.9-1, OpenMx-2.20.6, openssl-2.0.0, openxlsx-4.2.5, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2021-10.12, optmatch-0.10.0, optparse-1.7.1, ordinal-2019.12-10, origami-1.0.5, orthopolynom-1.0-5, outliers-0.15, p-a, packrat-0.7.0, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallelly-1.31.1, parallelMap-1.5.1, ParamHelpers-1.14, parsedate-1.3.0, party-1.3-9, partykit-1.2-15, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.5-0, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.2, pcaPP-1.9-74, pdp-0.7.0, PearsonDS-1.2.2, pec-2022.03.06, penalized-0.9-52, penfa-0.1.1, peperr-1.4, PermAlgo-1.1, permute-0.9-7, phangorn-2.8.1, pheatmap-1.0.12, phylobase-0.8.10, phytools-1.0-3, pillar-1.7.0, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.3.1, pkgconfig-2.0.3, pkgload-1.2.4, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.2, plotly-4.10.0, plotmo-3.6.1, plotrix-3.8-2, pls-2.8-0, plyr-1.8.7, PMA-1.2.1, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.6.0.1, polspline-1.1.20, polyclip-1.10-0, polycor-0.8-1, polynom-1.4-1, posterior-1.2.1, ppcor-1.1, prabclus-2.3-2, pracma-2.3.8, praise-1.0.0, PresenceAbsence-1.1.10, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, pROC-1.18.0, processx-3.5.3, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.10.0, projpred-2.1.1, promises-1.2.0.1, proto-1.0.0, proxy-0.4-26, pryr-0.1.5, ps-1.7.0, pscl-1.5.5, pspline-1.0-19, psych-2.2.3, Publish-2020.12.23, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.4, qgraph-1.9.2, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.88, questionr-0.7.7, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.11.0, R6-2.5.1, randomForest-4.7-1, randomForestSRC-3.1.0, randtoolbox-1.31.1, rangeModelMetadata-0.1.4, ranger-0.13.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.5-15, rasterVis-0.51.2, ratelimitr-0.4.1, rbibutils-2.2.8, rbison-1.0.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.2, rcmdcheck-1.4.0, RColorBrewer-1.1-3, Rcpp-1.0.8.3, RcppArmadillo-0.11.0.0.0, RcppEigen-0.3.3.9.2, RcppGSL-0.3.11, RcppParallel-5.1.5, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-2.1.3, RcppTOML-0.1.7, RCurl-1.98-1.6, rda-1.0.2-2.1, Rdpack-2.3, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-2.1.2, readxl-1.4.0, rebird-1.3.0, recipes-0.2.0, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, relsurv-2.2-7, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.2, rentrez-1.2.3, renv-0.15.5, reprex-2.0.1, resample-0.4, reshape-0.8.9, reshape2-1.4.4, reticulate-1.24, rex-1.2.1, rgbif-3.7.2, RGCCA-2.1.2, rgdal-1.5-31, rgeos-0.5-9, rgexf-0.16.2, rgl-0.108.3, Rglpk-0.6-4, RhpcBLASctl-0.21-247.1, ridigbio-0.3.5, RInside-0.2.17, rio-0.5.29, riskRegression-2022.03.22, ritis-1.0.0, RItools-0.1-18, rJava-1.0-6, rjson-0.2.21, RJSONIO-1.3-1.6, rlang-1.0.2, rle-0.9.2, rlecuyer-0.3-5, rlemon-0.2.0, rmarkdown-2.14, rmeta-3.0, Rmpfr-0.8-7, Rmpi-0.6-9.2, rms-6.3-0, RMTstat-0.3.1, rncl-0.8.6, rnetcarto-0.2.4, RNeXML-2.4.6, rngtools-1.5.2, rngWELL-0.10-7, robustbase-0.95-0, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.3, rotl-3.0.12, roxygen2-7.1.2, rpact-3.2.3, rpart-4.1.16, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.3, rrcov-1.7-0, rredlist-0.7.0, rsconnect-0.8.25, Rserve-1.8-10, RSNNS-0.4-14, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.2.12, Rssa-1.0.4, rstan-2.21.5, rstantools-2.2.0, rstatix-0.7.0, rstudioapi-0.13, rtdists-0.11-5, Rtsne-0.16, Rttf2pt1-1.3.10, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvertnet-0.8.2, rvest-1.0.2, rvinecopulib-0.6.1.1.3, Rvmmin-2018-4.17.1, RWeka-0.4-44, RWekajars-3.9.3-2, s-p, s-t, s-t, s2-1.0.7, sampling-2.9, sandwich-3.0-1, sass-0.4.1, SBdecomp-1.2, scales-1.2.0, scam-1.2-12, scatterplot3d-0.3-41, sctransform-0.3.3, SDMTools-1.1-221.2, seewave-2.2.0, segmented-1.5-0, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-5, sendmailR-1.2-1, sensemakr-0.1.4, seqinr-4.2-8, servr-0.24, sessioninfo-1.2.2, setRNG-2022.4-1, sf-1.0-7, sfheaders-0.4.0, sfsmisc-1.1-13, shape-1.4.6, shapefiles-0.7, shiny-1.7.1, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.4, slam-0.1-50, sm-2.2-5.7, smoother-1.1, sn-2.0.2, sna-2.6, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-7, spaa-0.2.2, spam-2.8-0, spaMM-3.11.14, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-15, spatstat-2.3-4, spatstat.core-2.4-2, spatstat.data-2.2-0, spatstat.geom-2.4-0, spatstat.linnet-2.3-2, spatstat.random-2.2-0, spatstat.sparse-2.1-1, spatstat.utils-2.3-0, spData-2.0.1, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.0, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.3, stars-0.5-5, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.4.36, statnet-2019.6, statnet.common-4.5.0, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.8, stringi-1.7.6, stringr-1.4.0, strucchange-1.5-2, styler-1.7.0, subplex-1.8, SuperLearner-2.0-28, SuppDists-1.1-9.7, survey-4.1-1, survival-3.3-1, survivalROC-1.0.3, svd-0.5.1, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.13.2, taxize-0.9.100, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.0.2, terra-1.5-21, testit-0.13, testthat-3.1.3, TFisher-0.2.0, TH.data-1.1-0, threejs-0.3.3, tibble-3.1.6, tictoc-1.0.1, tidygraph-1.2.1, tidyr-1.2.0, tidyselect-1.1.2, tidytext-0.3.2, tidyverse-1.3.1, tiff-0.1-11, timeDate-3043.102, timereg-2.0.2, tinytex-0.38, tkrplot-0.0-26, tm-0.7-8, tmap-3.3-3, tmaptools-3.1-1, TMB-1.8.1, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.5, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-3, tree-1.0-41, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-50, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.3, tuneR-1.4.0, twang-2.5, tweedie-2.3.3, tweenr-1.0.2, tzdb-0.3.0, u-t, ucminf-1.1-4, unbalanced-2.0, unikn-0.8.0, uniqueAtomMat-0.1-3-2, units-0.8-0, unmarked-1.1.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.1.5, utf8-1.2.2, uuid-1.1-0, V8-4.1.0, vcd-1.4-9, vcfR-1.12.0, vctrs-0.4.1, vegan-2.6-2, VennDiagram-1.7.3, VGAM-1.1-6, VIM-6.1.1, VineCopula-2.4.3, vioplot-0.3.7, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.1.0, vroom-1.5.7, VSURF-1.1.0, waldo-0.4.0, waveslim-1.8.2, wdm-0.2.3, webshot-0.5.3, weights-1.0.4, WeightSVM-1.7-9, wellknown-0.7.4, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.5.0, wk-0.6.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.4.0, xfun-0.30, xgboost-1.6.0.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.9, xml2-1.3.3, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.3.5, zeallot-0.1.0, zip-2.2.0, zoo-1.8-10"}, "R/4.2.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "abc-2.2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-19, ADGofTest-0.3, admisc-0.29, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-3.4, alabama-2022.4-1, AlgDesign-1.2.1, alluvial-0.1-2, AMAPVox-0.12.0, animation-2.7, aod-1.3.2, apcluster-1.4.10, ape-5.6-2, aplot-0.1.9, argparse-2.1.5, aricode-1.0.2, arm-1.12-2, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-10, aws-2.5-1, awsMethods-1.1-1, backports-1.4.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base, base64-2.0, base64enc-0.1-3, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.7, BayesLogit-2.1, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.9.0, BB-2019.10-1, BBmisc-1.12, bbmle-1.0.25, BCEE-1.3.0, BDgraph-2.67, bdsmatrix-1.3-6, beanplot-1.3.1, beeswarm-0.4.0, berryFunctions-1.22.0, betareg-3.1-4, BH-1.78.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.6, bigmemory-4.6.1, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-3, biom-0.3.12, biomod2-3.5.1, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.4-3, blob-1.2.3, BMA-3.18.17, bmp-0.3, bnlearn-4.7.1, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-7, brglm-0.7.2, bridgedist-0.1.1, bridgesampling-1.1-2, brio-1.1.3, brms-2.17.0, Brobdingnag-1.2-7, broom-0.8.0, broom.helpers-1.7.0, broom.mixed-0.2.9.4, bslib-0.3.1, bst-0.3-23, cachem-1.0.6, Cairo-1.5-15, calibrate-1.7.7, callr-3.7.0, car-3.1-0, carData-3.0-5, caret-6.0-92, catlearn-0.9.1, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, changepoint-2.2.4, checkmate-2.1.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-57, circlize-0.4.15, circular-0.4-95, class-7.3-20, classInt-0.4-7, cld2-1.2.4, cli-3.3.0, clipr-0.8.0, clisymbols-1.2.0, clue-0.3-61, cluster-2.1.3, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.4, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.2, cobalt-4.3.2, cobs-1.3-5, coda-0.19-4, codetools-0.2-18, coin-1.4-2, collapse-1.8.6, colorspace-2.0-3, colourpicker-1.1.1, combinat-0.0-8, ComICS-1.0.4, commonmark-1.8.0, compiler, ComplexUpset-1.3.3, compositions-2.0-4, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.3.0, contfrac-1.1-12, copCAR-2.0-4, copula-1.1-0, corpcor-1.6.10, corrplot-0.92, covr-3.5.1, CovSel-1.2.1, covsim-1.0.0, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-17, cpp11-0.4.2, crayon-1.5.1, credentials-1.3.2, crfsuite-0.4.1, crosstalk-1.2.0, crul-1.2.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.4, cubelyr-1.0.1, curl-4.3.2, cvAUC-1.1.4, CVST-0.2-3, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.2, data.tree-1.0.0, DataCombine-0.2.21, datasets, date-1.2-39, dbarts-0.9-22, DBI-1.1.3, dbplyr-2.2.0, dbscan-1.1-11, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-39, debugme-1.1.0, deldir-1.0-6, dendextend-1.15.2, DEoptim-2.2-6, DEoptimR-1.0-11, DepthProc-2.1.5, Deriv-4.1.3, desc-1.4.1, DescTools-0.99.45, deSolve-1.32, devtools-2.4.3, dfidx-0.0-4, DHARMa-0.4.5, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.9, DiceKriging-1.6.0, dichromat-2.0-0.1, diffobj-0.3.5, digest-0.6.29, dimRed-0.2.5, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-5, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, distributional-0.3.0, DistributionUtils-0.6-0, diveRsity-1.9.90, dlm-1.1-6, DMCfun-2.0.2, doc2vec-0.2.0, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.2, doSNOW-1.0.20, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.9, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.23, dtangle-2.0.9, dtplyr-1.2.1, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-11, earth-5.3.1, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.3, ellipsis-0.3.2, elliptic-1.4-0, emdbook-1.3.12, emoa-0.5-0.1, emulator-1.2-21, energy-1.7-10, ENMeval-2.0.3, entropy-1.3.1, EnvStats-2.7.0, epitools-0.5-10.1, ergm-4.2.2, ergm.count-4.1.1, evaluate-0.15, EValue-4.1.3, evd-2.3-6, Exact-3.1, expm-0.999-6, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.18, extrafontdb-1.0, extRemes-2.1-2, FactoMineR-2.4, FactorCopula-0.8, fail-1.3, fansi-1.0.3, farver-2.1.0, fastcluster-1.2.3, fastDummies-1.6.3, fasterize-1.0.3, fastICA-1.2-3, fastmap-1.1.0, fastmatch-1.1-3, fdrtool-1.2.17, feather-0.3.5, ff-4.0.7, ffbase-0.13.3, fftw-1.0-7, fftwtools-0.9-11, fields-13.3, filehash-2.4-3, finalfit-1.0.4, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-8, flashClust-1.01-2, flexclust-1.4-1, flexmix-2.3-18, fma-2.4, FME-1.3.6.2, fmri-1.9.6, FNN-1.1.3.1, fontawesome-0.2.2, forcats-0.5.1, foreach-1.5.2, forecast-8.16, foreign-0.8-82, formatR-1.12, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.2, furrr-0.3.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.26.1, future.apply-1.9.0, gam-1.20.1, gamlss-5.4-3, gamlss.data-6.0-2, gamlss.dist-6.0-3, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-6, gap.datasets-0.0.5, gapfill-0.9.6-1, gargle-1.2.0, gaussquad-1.0-3, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0.1, gdistance-1.3-6, gee-4.13-23, geeM-0.10.1, geepack-1.3.4, geex-1.0.12, geiger-2.0.10, GeneNet-1.2.16, generics-0.1.2, genoPlotR-0.8.11, GenSA-1.1.7, geojsonsf-2.0.3, geometries-0.2.0, geometry-0.4.6, gert-1.6.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.2, ggbeeswarm-0.6.0, ggdag-0.2.4, ggExtra-0.10.0, ggfan-0.1.3, ggforce-0.3.3, ggformula-0.10.2, ggfun-0.0.9, ggh4x-0.2.2, ggnetwork-0.5.10, ggplot2-3.3.6, ggplotify-0.1.0, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.3, ggstance-0.3.5, ggvenn-0.1.9, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.2, git2r-0.30.1, gitcreds-0.1.1, GJRM-0.2-6, glasso-1.11, gld-2.6.4, gllvm-1.3.1, glmmML-1.1.3, glmmTMB-1.1.3, glmnet-4.1-4, GlobalOptions-0.1.2, globals-0.15.0, glue-1.6.2, gmm-1.6-6, gmodels-2.18.1.1, gmp-0.6-5, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.0, gower-1.0.0, GPArotation-2022.4-1, gplots-3.1.3, graphics, graphlayouts-0.8.0, grDevices, grf-2.1.0, grid, gridBase-0.4-7, gridExtra-2.3, gridGraphics-0.5-1, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.2, gsalib-2.1, gsl-2.1-7.1, gsw-1.0-6, gt-0.6.0, gtable-0.3.0, gtools-3.9.2.2, gtsummary-1.6.1, GUTS-1.2.3, gWidgets2-1.0-9, gWidgets2tcltk-1.0-8, GxEScanR-2.0.2, h2o-3.36.1.2, hal9001-0.4.3, hardhat-1.1.0, harmony-0.1.0, hash-2.2.6.2, haven-2.5.0, hdf5r-1.3.5, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HGNChelper-0.8.1, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.7-0, hms-1.1.1, Hmsc-3.0-11, htmlTable-2.4.0, htmltools-0.5.2, htmlwidgets-1.5.4, httpcode-0.3.0, httpuv-1.6.5, httr-1.4.3, huge-1.3.5, hunspell-3.0.1, hwriter-1.3.2.1, HWxtest-1.1.9, hypergeo-1.2-13, ica-1.0-2, IDPmisc-1.1.20, idr-1.3, ids-1.0.1, ie2misc-0.8.8, igraph-1.3.2, image.binarization-0.1.2, imager-0.42.13, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0.1, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-13, irace-3.4.1, irlba-2.3.5, ismev-1.42, Iso-0.0-18.1, isoband-0.2.5, ISOcodes-2022.01.10, ISOweek-0.6-2, iterators-1.0.14, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-3, jpeg-0.1-9, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.8.0, jstable-1.0.7, kde1d-1.0.4, kedd-1.0.3, kernlab-0.9-31, KernSmooth-2.23-20, kinship2-1.9.6, klaR-1.7-0, knitr-1.39, KODAMA-1.9, kohonen-3.0.11, ks-1.13.5, labdsv-2.0-1, labeling-0.4.2, labelled-2.9.1, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.3, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-29, lava-1.6.10, lavaan-0.6-11, lazy-1.2-17, lazyeval-0.2.2, LCFdata-2.0, lda-1.4.2, ldbounds-2.0.0, leafem-0.2.0, leaflet-2.1.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.4.2, lhs-1.1.5, libcoin-1.0-9, lifecycle-1.0.1, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-4, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-29, LMERConvenienceFunctions-3.0, lmerTest-3.1-3, lmom-2.9, Lmoments-1.3-1, lmtest-0.9-40, lobstr-1.1.2, locfdr-1.1-8, locfit-1.5-9.5, logcondens-2.1.6, logger-0.2.2, logistf-1.24.1, logspline-2.1.17, longitudinal-1.1.13, longmemo-1.1-2, loo-2.5.1, lpSolve-5.6.15, lpSolveAPI-5.5.2.0-17.7, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.8.0, lwgeom-0.2-8, magic-1.6-0, magick-2.7.3, magrittr-2.0.3, MALDIquant-1.21, manipulateWidget-0.11.1, mapproj-1.2.8, maps-3.4.0, maptools-1.1-4, markdown-1.1, MASS-7.3-57, Matching-4.10-2, MatchIt-4.4.0, mathjaxr-1.6-0, matlab-1.0.4, Matrix-1.4-1, matrixcalc-1.0-5, MatrixModels-0.5-0, matrixStats-0.62.0, maxLik-1.5-2, maxlike-0.1-8, maxnet-0.1.4, mboost-2.9-7, mclust-5.4.10, mcmc-0.9-7, MCMCpack-1.6-3, mcmcse-1.5-0, mda-0.5-3, medflex-0.6-7, mediation-4.5.0, memoise-2.0.1, memuse-4.2-1, MESS-0.5.9, metadat-1.2-0, metafor-3.4-0, MetaUtility-2.1.2, methods, mets-1.2.9, mgcv-1.8-40, mgsub-1.7.3, mhsmm-0.4.16, mi-1.1, mice-3.14.0, miceadds-3.13-12, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-2, minqa-1.2.4, mirt-1.36.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.5, mitml-0.4-3, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.9, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.0, mlrMBO-1.1.5.1, mltools-0.3.5, mnormt-2.1.0, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14.1, MonteCarlo-1.0.6, mosaicCore-0.9.2.1, mpath-0.4-2.22, mRMRe-2.1.2, msm-1.6.9, mstate-0.3.2, multcomp-1.4-19, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.2.1, mvnfast-0.2.7, mvtnorm-1.1-3, nabor-0.5.0, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, ncdf4-1.19, NCmisc-1.1.6, network-1.17.2, networkDynamic-0.11.2, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-158, nloptr-2.0.3, NLP-0.2-1, nlsem-0.8, nnet-7.3-17, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-10.0, nortest-1.0-4, np-0.60-11, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.3.2, oce-1.7-6, OceanView-1.0.6, oddsratio-2.0.1, openair-2.10-0, OpenMx-2.20.6, openssl-2.0.2, openxlsx-4.2.5, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2022-4.30, optmatch-0.10.3, optparse-1.7.1, ordinal-2019.12-10, origami-1.0.5, orthopolynom-1.0-6, outliers-0.15, packrat-0.8.0, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallel, parallelDist-0.2.6, parallelly-1.32.0, parallelMap-1.5.1, ParamHelpers-1.14, parsedate-1.3.0, party-1.3-10, partykit-1.2-16, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.5-0, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.2, pcaPP-2.0-1, pdp-0.8.1, PearsonDS-1.2.2, pec-2022.05.04, penalized-0.9-52, penfa-0.1.1, peperr-1.4, PermAlgo-1.2, permute-0.9-7, phangorn-2.9.0, pheatmap-1.0.12, phylobase-0.8.10, phytools-1.0-3, pillar-1.7.0, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.3.1, pkgconfig-2.0.3, pkgload-1.2.4, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.3, plotly-4.10.0, plotmo-3.6.2, plotrix-3.8-2, pls-2.8-0, plyr-1.8.7, PMA-1.2.1, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.6.0.1, polspline-1.1.20, polyclip-1.10-0, polycor-0.8-1, polynom-1.4-1, posterior-1.2.2, ppcor-1.1, prabclus-2.3-2, pracma-2.3.8, praise-1.0.0, PresenceAbsence-1.1.10, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, pROC-1.18.0, processx-3.6.1, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.10.1, projpred-2.1.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-27, proxyC-0.3.3, pryr-0.1.5, ps-1.7.1, pscl-1.5.5, pspline-1.0-19, psych-2.2.5, Publish-2020.12.23, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.4, qgraph-1.9.2, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quanteda-3.2.3, quantmod-0.4.20, quantreg-5.93, questionr-0.7.7, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.2, R.oo-1.25.0, R.rsp-0.44.0, R.utils-2.11.0, R2WinBUGS-2.1-21, R6-2.5.1, random-0.2.6, randomForest-4.7-1.1, randomForestSRC-3.1.0, randtoolbox-2.0.1, rangeModelMetadata-0.1.4, ranger-0.14.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.5-15, rasterVis-0.51.2, ratelimitr-0.4.1, RBesT-1.6-6, rbibutils-2.2.8, rbison-1.0.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2022-4.30, RCircos-1.2.2, rcmdcheck-1.4.0, RColorBrewer-1.1-3, Rcpp-1.0.8.3, RcppArmadillo-0.11.2.0.0, RcppEigen-0.3.3.9.2, RcppGSL-0.3.11, RcppParallel-5.1.5, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-2.1.3, RcppTOML-0.1.7, RCurl-1.98-1.7, rda-1.0.2-2.1, Rdpack-2.3.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-2.1.2, readxl-1.4.0, rebird-1.3.0, recipes-0.2.0, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, relsurv-2.2-7, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.2, rentrez-1.2.3, renv-0.15.5, reprex-2.0.1, resample-0.6, reshape-0.8.9, reshape2-1.4.4, reticulate-1.25, rex-1.2.1, rgbif-3.7.2, RGCCA-2.1.2, rgdal-1.5-32, rgeos-0.5-9, rgexf-0.16.2, rgl-0.109.2, Rglpk-0.6-4, RhpcBLASctl-0.21-247.1, ridigbio-0.3.5, RInside-0.2.17, rio-0.5.29, riskRegression-2022.03.22, ritis-1.0.0, RItools-0.1-18, rJava-1.0-6, rjson-0.2.21, RJSONIO-1.3-1.6, rlang-1.0.2, rle-0.9.2, rlecuyer-0.3-5, rlemon-0.2.0, rlist-0.4.6.2, rmarkdown-2.14, rmeta-3.0, Rmpfr-0.8-9, Rmpi-0.6-9.2, rms-6.3-0, RMTstat-0.3.1, rncl-0.8.6, rnetcarto-0.2.5, RNeXML-2.4.7, rngtools-1.5.2, rngWELL-0.10-7, robustbase-0.95-0, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.3, roptim-0.1.6, rotl-3.0.12, roxygen2-7.2.0, rpact-3.3.0, rpart-4.1.16, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.3, rrcov-1.7-0, rredlist-0.7.0, rsconnect-0.8.26, Rserve-1.8-10, RSNNS-0.4-14, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.2.14, Rssa-1.0.4, rstan-2.21.5, rstantools-2.2.0, rstatix-0.7.0, rstudioapi-0.13, rtdists-0.11-5, Rtsne-0.16, Rttf2pt1-1.3.10, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvertnet-0.8.2, rvest-1.0.2, rvinecopulib-0.6.1.1.3, Rvmmin-2018-4.17.1, RWeka-0.4-44, RWekajars-3.9.3-2, s2-1.0.7, sampling-2.9, sandwich-3.0-2, sass-0.4.1, SBdecomp-1.2, scales-1.2.0, scam-1.2-12, scatterpie-0.1.8, scatterplot3d-0.3-41, sctransform-0.3.3, SDMTools-1.1-221.2, seewave-2.2.0, segmented-1.6-0, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-6, sendmailR-1.2-1.1, sensemakr-0.1.4, sentometrics-1.0.0, seqinr-4.2-16, servr-0.24, sessioninfo-1.2.2, setRNG-2022.4-1, sf-1.0-7, sfheaders-0.4.0, sfsmisc-1.1-13, shadowtext-0.1.2, shape-1.4.6, shapefiles-0.7, shiny-1.7.1, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.4, slam-0.1-50, sm-2.2-5.7, smoof-1.6.0.3, smoother-1.1, sn-2.0.2, sna-2.7, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.5-0, spaa-0.2.2, spam-2.8-0, spaMM-3.12.0, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-15, spatstat-2.3-4, spatstat.core-2.4-4, spatstat.data-2.2-0, spatstat.geom-2.4-0, spatstat.linnet-2.3-2, spatstat.random-2.2-0, spatstat.sparse-2.1-1, spatstat.utils-2.3-1, spData-2.0.1, splines, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.0, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.3, stars-0.5-5, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.4.36, statnet-2019.6, statnet.common-4.6.0, stats, stats4, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.8, stringi-1.7.6, stringr-1.4.0, strucchange-1.5-3, styler-1.7.0, subplex-1.8, SuperLearner-2.0-28, SuppDists-1.1-9.7, survey-4.1-1, survival-3.3-1, survivalROC-1.0.3, svd-0.5.1, svglite-2.1.1, swagger-3.33.1, symmoments-1.2.1, sys-3.4, systemfonts-1.0.4, tableone-0.13.2, tau-0.0-24, taxize-0.9.100, tcltk, tcltk2-1.2-11, tclust-1.5-1, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.1.0, terra-1.5-34, testit-0.13, testthat-3.1.4, textcat-1.0-8, textplot-0.2.2, TFisher-0.2.0, TH.data-1.1-1, threejs-0.3.3, tibble-3.1.7, tictoc-1.0.1, tidygraph-1.2.1, tidyr-1.2.0, tidyselect-1.1.2, tidytext-0.3.3, tidytree-0.4.1, tidyverse-1.3.1, tiff-0.1-11, timeDate-3043.102, timereg-2.0.2, tinytex-0.40, tkrplot-0.0-26, tm-0.7-8, tmap-3.3-3, tmaptools-3.1-1, TMB-1.9.0, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.5, tokenizers-0.2.1, tools, topicmodels-0.2-12, TraMineR-2.2-4, tree-1.0-42, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-51, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.3, tuneR-1.4.0, tvem-1.3.1, twang-2.5, tweedie-2.3.3, tweenr-1.0.2, tzdb-0.3.0, ucminf-1.1-4, udpipe-0.8.11, unbalanced-2.0, unikn-0.8.0, uniqueAtomMat-0.1-3-2, units-0.8-0, unmarked-1.2.5, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.1.6, utf8-1.2.2, utils, uuid-1.1-0, V8-4.2.0, varhandle-2.0.5, vcd-1.4-10, vcfR-1.12.0, vctrs-0.4.1, vegan-2.6-2, VennDiagram-1.7.3, VGAM-1.1-6, VIM-6.1.1, VineCopula-2.4.4, vioplot-0.3.7, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.1.0, vroom-1.5.7, VSURF-1.1.0, waldo-0.4.0, waveslim-1.8.3, wdm-0.2.3, webshot-0.5.3, webutils-1.1, weights-1.0.4, WeightSVM-1.7-9, wellknown-0.7.4, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.5.0, wk-0.6.0, word2vec-0.3.4, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.4.0, xfun-0.31, xgboost-1.6.0.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.10, xml2-1.3.3, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.3.5, yulab.utils-0.0.5, zeallot-0.1.0, zip-2.2.0, zoo-1.8-10"}, "R/4.2.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "abc-2.2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-22, ADGofTest-0.3, admisc-0.31, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-3.4, alabama-2022.4-1, AlgDesign-1.2.1, alluvial-0.1-2, AMAPVox-1.0.0, animation-2.7, aod-1.3.2, apcluster-1.4.10, ape-5.7-1, aplot-0.1.10, argparse-2.2.2, aricode-1.0.2, arm-1.13-1, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-10, aws-2.5-1, awsMethods-1.1-1, backports-1.4.1, bacr-1.0.1, bartMachine-1.3.3.1, bartMachineJARs-1.2.1, base, base64-2.0.1, base64enc-0.1-3, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.8, BayesLogit-2.1, bayesm-3.1-5, BayesPen-1.0, bayesplot-1.10.0, BB-2019.10-1, BBmisc-1.13, bbmle-1.0.25, BCEE-1.3.1, BDgraph-2.72, bdsmatrix-1.3-6, beanplot-1.3.1, beeswarm-0.4.0, berryFunctions-1.22.0, betareg-3.1-4, BH-1.81.0-1, BiasedUrn-2.0.9, bibtex-0.5.1, bigD-0.2.0, BIGL-1.7.0, bigmemory-4.6.1, bigmemory.sri-0.1.6, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-4, biom-0.3.12, biomod2-4.2-2, bit-4.0.5, bit64-4.0.5, bitops-1.0-7, blavaan-0.4-7, blob-1.2.4, BMA-3.18.17, bmp-0.3, bnlearn-4.8.1, bold-1.2.0, boot-1.3-28.1, bootstrap-2019.6, Boruta-8.0.0, brew-1.0-8, brglm-0.7.2, bridgedist-0.1.2, bridgesampling-1.1-2, brio-1.1.3, brms-2.19.0, Brobdingnag-1.2-9, broom-1.0.4, broom.helpers-1.12.0, broom.mixed-0.2.9.4, bslib-0.4.2, bst-0.3-24, cachem-1.0.7, Cairo-1.6-0, calibrate-1.7.7, callr-3.7.3, car-3.1-1, carData-3.0-5, caret-6.0-93, catlearn-0.9.1, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.2.10, cghFLasso-0.2-1, changepoint-2.2.4, checkmate-2.1.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-60, circlize-0.4.15, circular-0.4-95, class-7.3-21, classInt-0.4-9, cld2-1.2.4, cli-3.6.0, clipr-0.8.0, clisymbols-1.2.0, clock-0.6.1, clue-0.3-64, cluster-2.1.4, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.5.0, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.2, cobalt-4.4.1, cobs-1.3-5, coda-0.19-4, codetools-0.2-19, coin-1.4-2, collapse-1.9.3, colorspace-2.1-0, colourpicker-1.2.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.8.1, compiler, ComplexUpset-1.3.3, compositions-2.0-5, CompQuadForm-1.4.3, conditionz-0.1.0, conflicted-1.2.0, conquer-1.3.3, contfrac-1.1-12, copCAR-2.0-4, copula-1.1-2, corpcor-1.6.10, corrplot-0.92, covr-3.6.1, CovSel-1.2.1, covsim-1.0.0, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-18.1, cpp11-0.4.3, crayon-1.5.2, credentials-1.3.2, crfsuite-0.4.1, crosstalk-1.2.0, crul-1.3, cSEM-0.5.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.6, cubelyr-1.0.2, curl-5.0.0, cvAUC-1.1.4, CVST-0.2-3, CVXR-1.0-11, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.8, data.tree-1.0.0, DataCombine-0.2.21, datasets, date-1.2-42, dbarts-0.9-23, DBI-1.1.3, dbplyr-2.3.1, dbscan-1.1-11, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-42, debugme-1.1.0, deldir-1.0-6, dendextend-1.16.0, DEoptim-2.2-8, DEoptimR-1.0-11, DepthProc-2.1.5, Deriv-4.1.3, desc-1.4.2, DescTools-0.99.48, deSolve-1.35, devtools-2.4.5, dfidx-0.0-5, DHARMa-0.4.6, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.9, DiceKriging-1.6.0, dichromat-2.0-0.1, diffobj-0.3.5, digest-0.6.31, dimRed-0.2.6, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-9, distillery-1.2-1, distr-2.9.1, distrEx-2.9.0, distributional-0.3.1, DistributionUtils-0.6-0, diveRsity-1.9.90, dlm-1.1-6, DMCfun-2.0.2, doc2vec-0.2.0, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.6, doSNOW-1.0.20, dotCall64-1.0-2, downlit-0.4.2, downloader-0.4, dplyr-1.1.0, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.27, dtangle-2.0.9, dtplyr-1.3.0, DTRreg-1.7, dtw-1.23-1, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-13, earth-5.3.2, EasyABC-1.5.2, ECOSolveR-0.5.5, elementR-1.3.7, ellipse-0.4.3, ellipsis-0.3.2, elliptic-1.4-0, emdbook-1.3.12, emmeans-1.8.5, emoa-0.5-0.1, emulator-1.2-21, energy-1.7-11, ENMeval-2.0.4, entropy-1.3.1, EnvStats-2.7.0, epitools-0.5-10.1, ergm-4.4.0, ergm.count-4.1.1, estimability-1.4.1, evaluate-0.20, EValue-4.1.3, evd-2.3-6.1, Exact-3.2, expm-0.999-7, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.19, extrafontdb-1.0, extRemes-2.1-3, FactoMineR-2.7, FactorCopula-0.9.3, fail-1.3, fansi-1.0.4, farver-2.1.1, fastcluster-1.2.3, fastDummies-1.6.3, fasterize-1.0.4, fastICA-1.2-3, fastmap-1.1.1, fastmatch-1.1-3, fdrtool-1.2.17, feather-0.3.5, ff-4.0.9, fftw-1.0-7, fftwtools-0.9-11, fields-14.1, filehash-2.4-5, finalfit-1.0.6, findpython-1.0.8, fishMod-0.29, fitdistrplus-1.1-8, FKSUM-1.0.1, flashClust-1.01-2, flexclust-1.4-1, flexmix-2.3-19, flextable-0.9.2, fma-2.5, FME-1.3.6.2, fmri-1.9.11, FNN-1.1.3.1, fontawesome-0.5.0, fontBitstreamVera-0.1.1, fontLiberation-0.1.0, fontquiver-0.2.1, forcats-1.0.0, foreach-1.5.2, forecast-8.21, foreign-0.8-84, formatR-1.14, Formula-1.2-5, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-10, fpp-0.5, fracdiff-1.5-2, fs-1.6.1, furrr-0.3.1, futile.logger-1.4.3, futile.options-1.0.1, future-1.32.0, future.apply-1.10.0, gam-1.22-1, gamlss-5.4-12, gamlss.data-6.0-2, gamlss.dist-6.0-5, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.5-1, gap.datasets-0.0.5, gapfill-0.9.6-1, gargle-1.3.0, gaussquad-1.0-3, gbm-2.1.8.1, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0.1, gdistance-1.6, gdtools-0.3.3, gee-4.13-25, geeM-0.10.1, geepack-1.3.9, geex-1.1.1, geiger-2.0.10, GeneNet-1.2.16, generics-0.1.3, genoPlotR-0.8.11, GenSA-1.1.8, geojsonsf-2.0.3, geometries-0.2.2, geometry-0.4.7, gert-1.9.2, getopt-1.20.3, GetoptLong-1.0.5, gfonts-0.2.0, GGally-2.1.2, ggbeeswarm-0.7.1, ggdag-0.2.7, ggExtra-0.10.0, ggfan-0.1.3, ggforce-0.4.1, ggformula-0.10.2, ggfun-0.0.9, ggh4x-0.2.3, ggnetwork-0.5.12, ggplot2-3.4.1, ggplotify-0.1.0, ggpubr-0.6.0, ggraph-2.1.0, ggrepel-0.9.3, ggridges-0.5.4, ggsci-3.0.0, ggsignif-0.6.4, ggstance-0.3.6, ggvenn-0.1.9, ggvis-0.4.8, gh-1.4.0, GillespieSSA-0.6.2, git2r-0.31.0, gitcreds-0.1.2, GJRM-0.2-6.1, glasso-1.11, gld-2.6.6, gllvm-1.4.1, glmmML-1.1.4, glmmTMB-1.1.5, glmnet-4.1-6, GlobalOptions-0.1.2, globals-0.16.2, glue-1.6.2, gmm-1.7, gmodels-2.18.1.1, gmp-0.7-1, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.1, gower-1.0.1, GPArotation-2022.10-2, gplots-3.1.3, graphics, graphlayouts-0.8.4, grDevices, grf-2.2.1, grid, gridBase-0.4-7, gridExtra-2.3, gridGraphics-0.5-1, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.2, gsalib-2.2.1, gsl-2.1-8, gsw-1.1-1, gt-0.8.0, gtable-0.3.1, gtools-3.9.4, gtsummary-1.7.0, GUTS-1.2.3, gWidgets2-1.0-9, gWidgets2tcltk-1.0-8, GxEScanR-2.0.2, h2o-3.40.0.1, hal9001-0.4.3, haldensify-0.2.3, hardhat-1.2.0, harmony-0.1.1, hash-2.2.6.2, haven-2.5.2, hdf5r-1.3.8, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HGNChelper-0.8.1, HiddenMarkov-1.8-13, highr-0.10, Hmisc-5.0-1, hms-1.1.2, Hmsc-3.0-13, htmlTable-2.4.1, htmltools-0.5.4, htmlwidgets-1.6.1, httpcode-0.3.0, httpuv-1.6.9, httr-1.4.5, httr2-0.2.2, huge-1.3.5, hunspell-3.0.2, hwriter-1.3.2.1, HWxtest-1.1.9, hypergeo-1.2-13, ica-1.0-3, IDPmisc-1.1.20, idr-1.3, ids-1.0.1, ie2misc-0.9.0, igraph-1.4.1, image.binarization-0.1.3, imager-0.42.18, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0.1, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interp-1.1-3, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-5, ipred-0.9-14, irace-3.5, irlba-2.3.5.1, ismev-1.42, Iso-0.0-18.1, isoband-0.2.7, ISOcodes-2022.09.29, ISOweek-0.6-2, iterators-1.0.14, itertools-0.1-3, JADE-2.0-3, janeaustenr-1.0.0, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-4, jpeg-0.1-10, jquerylib-0.1.4, jsonify-1.2.2, jsonlite-1.8.4, jstable-1.0.7, juicyjuice-0.1.0, kde1d-1.0.5, kedd-1.0.3, kernlab-0.9-32, KernSmooth-2.23-20, kinship2-1.9.6, klaR-1.7-1, knitr-1.42, KODAMA-2.4, kohonen-3.0.11, ks-1.14.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.10.0, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.3, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-30, lava-1.7.2.1, lavaan-0.6-15, lazy-1.2-18, lazyeval-0.2.2, LCFdata-2.0, lda-1.4.2, ldbounds-2.0.0, leafem-0.2.0, leaflet-2.1.2, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.4.3, lhs-1.1.6, libcoin-1.0-9, lifecycle-1.0.3, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-4, liquidSVM-1.2.4, listenv-0.9.0, lme4-1.1-32, LMERConvenienceFunctions-3.0, lmerTest-3.1-3, lmom-2.9, Lmoments-1.3-1, lmtest-0.9-40, lobstr-1.1.2, locfdr-1.1-8, locfit-1.5-9.7, logcondens-2.1.7, logger-0.2.2, logistf-1.24.1, logspline-2.1.19, longitudinal-1.1.13, longmemo-1.1-2, loo-2.5.1, lpSolve-5.6.18, lpSolveAPI-5.5.2.0-17.9, lqa-1.0-3, lsei-1.3-0, lslx-0.6.11, lubridate-1.9.2, lwgeom-0.2-11, magic-1.6-1, magick-2.7.4, magrittr-2.0.3, MALDIquant-1.22, manipulateWidget-0.11.1, mapproj-1.2.11, maps-3.4.1, maptools-1.1-6, markdown-1.5, MASS-7.3-58.3, Matching-4.10-8, MatchIt-4.5.1, mathjaxr-1.6-0, matlab-1.0.4, Matrix-1.5-3, matrixcalc-1.0-6, MatrixModels-0.5-1, matrixStats-0.63.0, maxLik-1.5-2, maxlike-0.1-9, maxnet-0.1.4, mboost-2.9-7, mclogit-0.9.6, mclust-6.0.0, mcmc-0.9-7, MCMCpack-1.6-3, mcmcse-1.5-0, mda-0.5-3, medflex-0.6-7, mediation-4.5.0, memisc-0.99.31.6, memoise-2.0.1, memuse-4.2-3, MESS-0.5.9, metadat-1.2-0, metafor-3.8-1, MetaUtility-2.1.2, methods, mets-1.3.2, mgcv-1.8-42, mgsub-1.7.3, mhsmm-0.4.16, mi-1.1, mice-3.15.0, miceadds-3.16-18, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-3, minqa-1.2.5, mirt-1.38.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.5, mitml-0.4-5, mitools-2.4, mixtools-2.0.0, mlbench-2.1-3, mlegp-3.1.9, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.1, mlrMBO-1.1.5.1, mltools-0.3.5, mnormt-2.1.1, ModelMetrics-1.2.2.2, modelr-0.1.10, modeltools-0.2-23, momentfit-0.3, moments-0.14.1, MonteCarlo-1.0.6, mosaicCore-0.9.2.1, mpath-0.4-2.23, mRMRe-2.1.2, msm-1.7, mstate-0.3.2, multcomp-1.4-23, multcompView-0.1-8, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.2.1, mvnfast-0.2.8, mvtnorm-1.1-3, nabor-0.5.0, naniar-1.0.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29.1, ncdf4-1.21, NCmisc-1.2.0, network-1.18.1, networkDynamic-0.11.3, networkLite-1.0.5, neuralnet-1.44.2, neuRosim-0.2-13, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.4, nlme-3.1-162, nloptr-2.0.3, NLP-0.2-1, nlsem-0.8, nnet-7.3-18, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-10.0, nortest-1.0-4, np-0.60-17, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.4.0, oce-1.7-10, OceanView-1.0.6, oddsratio-2.0.1, officer-0.6.2, openair-2.16-0, OpenMx-2.21.1, openssl-2.0.6, openxlsx-4.2.5.2, operator.tools-1.6.3, optextras-2019-12.4, optimParallel-1.0-2, optimr-2019-12.16, optimx-2022-4.30, optmatch-0.10.6, optparse-1.7.3, ordinal-2022.11-16, origami-1.0.7, oro.nifti-0.11.4, orthopolynom-1.0-6.1, osqp-0.6.0.8, outliers-0.15, packrat-0.9.1, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallel, parallelDist-0.2.6, parallelly-1.34.0, parallelMap-1.5.1, ParamHelpers-1.14.1, parsedate-1.3.1, party-1.3-13, partykit-1.2-18, pastecs-1.3.21, patchwork-1.1.2, pbapply-1.7-0, pbivnorm-0.6.0, pbkrtest-0.5.2, PCAmatchR-0.3.3, pcaPP-2.0-3, pdp-0.8.1, PearsonDS-1.2.3, pec-2022.05.04, penalized-0.9-52, penfa-0.1.1, peperr-1.4, PermAlgo-1.2, permute-0.9-7, phangorn-2.11.1, pheatmap-1.0.12, phylobase-0.8.10, phytools-1.5-1, pillar-1.8.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.4.0, pkgconfig-2.0.3, pkgdown-2.0.7, pkgload-1.3.2, pkgmaker-0.32.8, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.4, plotly-4.10.1, plotmo-3.6.2, plotrix-3.8-2, pls-2.8-1, plyr-1.8.8, PMA-1.2.1, png-0.1-8, PoissonSeq-1.1.2, poLCA-1.6.0.1, polspline-1.1.22, Polychrome-1.5.1, polyclip-1.10-4, polycor-0.8-1, polynom-1.4-1, posterior-1.4.1, ppcor-1.1, prabclus-2.3-2, pracma-2.4.2, praise-1.0.0, PresenceAbsence-1.1.11, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, princurve-2.1.6, pROC-1.18.0, processx-3.8.0, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, profvis-0.3.7, progress-1.2.2, progressr-0.13.0, projpred-2.4.0, promises-1.2.0.1, proto-1.0.0, proxy-0.4-27, proxyC-0.3.3, pryr-0.1.6, ps-1.7.2, pscl-1.5.5, pspline-1.0-19, psych-2.2.9, Publish-2023.01.17, pulsar-0.3.10, purrr-1.0.1, pvclust-2.2-0, qgam-1.3.4, qgraph-1.9.3, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quanteda-3.3.0, quantmod-0.4.20, quantreg-5.94, questionr-0.7.8, R.cache-0.16.0, R.matlab-3.7.0, R.methodsS3-1.8.2, R.oo-1.25.0, R.rsp-0.45.0, R.utils-2.12.2, R2WinBUGS-2.1-21, R6-2.5.1, ragg-1.2.5, random-0.2.6, randomForest-4.7-1.1, randomForestSRC-3.2.1, randtoolbox-2.0.4, rangeModelMetadata-0.1.4, ranger-0.14.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, rARPACK-0.11-0, raster-3.6-20, rasterVis-0.51.5, ratelimitr-0.4.1, RBesT-1.6-6, rbibutils-2.2.13, rbison-1.0.0, Rborist-0.3-2, RCAL-2.0, Rcgmin-2022-4.30, RCircos-1.2.2, rcmdcheck-1.4.0, RColorBrewer-1.1-3, Rcpp-1.0.10, RcppArmadillo-0.12.0.1.0, RcppEigen-0.3.3.9.3, RcppGSL-0.3.13, RcppParallel-5.1.7, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-2.1.3, RcppTOML-0.2.2, RCurl-1.98-1.10, rda-1.2-1, Rdpack-2.4, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.8.0, readr-2.1.4, readxl-1.4.2, rebird-1.3.0, recipes-1.0.5, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.9.3, relsurv-2.2-9, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.2, rentrez-1.2.3, renv-0.17.1, reprex-2.0.2, resample-0.6, reshape-0.8.9, reshape2-1.4.4, reticulate-1.28, rex-1.2.1, rgbif-3.7.5, RGCCA-2.1.2, rgdal-1.6-5, rgeos-0.6-2, rgexf-0.16.2, rgl-1.0.1, Rglpk-0.6-4, RhpcBLASctl-0.23-42, ridge-3.3, ridigbio-0.3.6, RInside-0.2.18, rio-0.5.29, riskRegression-2022.11.28, ritis-1.0.0, RItools-0.3-3, rJava-1.0-6, rjson-0.2.21, RJSONIO-1.3-1.8, rlang-1.1.0, rle-0.9.2, rlecuyer-0.3-5, rlemon-0.2.1, rlist-0.4.6.2, rmarkdown-2.20, rmeta-3.0, Rmpfr-0.9-1, rms-6.5-0, RMTstat-0.3.1, rncl-0.8.7, rnetcarto-0.2.6, RNeXML-2.4.11, rngtools-1.5.2, rngWELL-0.10-9, RNifti-1.4.5, robustbase-0.95-0, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.2, rootSolve-1.8.2.3, roptim-0.1.6, rotl-3.0.14, roxygen2-7.2.3, rpact-3.3.4, rpart-4.1.19, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.3, rrcov-1.7-2, rredlist-0.7.1, rsample-1.1.1, rsconnect-0.8.29, Rserve-1.8-11, RSNNS-0.4-15, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.3.0, Rssa-1.0.5, rstan-2.21.8, rstantools-2.3.0, rstatix-0.7.2, rstudioapi-0.14, rtdists-0.11-5, Rtsne-0.16, Rttf2pt1-1.3.12, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.2, rvertnet-0.8.2, rvest-1.0.3, rvinecopulib-0.6.3.1.1, Rvmmin-2018-4.17.1, RWeka-0.4-46, RWekajars-3.9.3-2, s2-1.1.2, sampling-2.9, sandwich-3.0-2, sass-0.4.5, SBdecomp-1.2, scales-1.2.1, scam-1.2-13, scatterpie-0.1.8, scatterplot3d-0.3-43, scs-3.2.4, sctransform-0.3.5, SDMTools-1.1-221.2, seewave-2.2.0, segmented-1.6-2, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-6, sendmailR-1.4-0, sensemakr-0.1.4, sentometrics-1.0.0, seqinr-4.2-23, servr-0.25, sessioninfo-1.2.2, setRNG-2022.4-1, sf-1.0-11, sfheaders-0.4.2, sfsmisc-1.1-14, shadowtext-0.1.2, shape-1.4.6, shapefiles-0.7.2, shiny-1.7.4, shinycssloaders-1.0.0, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.5, slam-0.1-50, slider-0.3.0, sm-2.2-5.7.1, smoof-1.6.0.3, smoother-1.1, sn-2.1.0, sna-2.7-1, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.2, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7-1, sp-1.6-0, spaa-0.2.2, spam-2.9-1, spaMM-4.2.1, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-16, spatstat-3.0-3, spatstat.core-2.4-4, spatstat.data-3.0-1, spatstat.explore-3.1-0, spatstat.geom-3.1-0, spatstat.linnet-3.0-6, spatstat.model-3.2-1, spatstat.random-3.1-4, spatstat.sparse-3.0-1, spatstat.utils-3.0-2, spData-2.2.2, splines, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.1, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.3, stars-0.6-0, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.5.0, statnet-2019.6, statnet.common-4.8.0, stats, stats4, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.10, stringi-1.7.12, stringr-1.5.0, strucchange-1.5-3, styler-1.9.1, subplex-1.8, SuperLearner-2.0-28, SuppDists-1.1-9.7, survey-4.1-1, survival-3.5-5, survivalROC-1.0.3.1, svd-0.5.3, svglite-2.1.1, swagger-3.33.1, symmoments-1.2.1, sys-3.4.1, systemfonts-1.0.4, tableone-0.13.2, tabletools-0.1.0, tau-0.0-24, taxize-0.9.100, tcltk, tcltk2-1.2-11, tclust-1.5-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.1.1, terra-1.7-18, testit-0.13, testthat-3.1.7, textcat-1.0-8, textplot-0.2.2, textshaping-0.3.6, TFisher-0.2.0, TH.data-1.1-1, threejs-0.3.3, tibble-3.2.0, tictoc-1.1, tidygraph-1.2.3, tidyr-1.3.0, tidyselect-1.2.0, tidytext-0.4.1, tidytree-0.4.2, tidyverse-2.0.0, tiff-0.1-11, timechange-0.2.0, timeDate-4022.108, timereg-2.0.5, tinytex-0.44, tkrplot-0.0-27, tm-0.7-11, tmap-3.3-3, tmaptools-3.1-1, TMB-1.9.2, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.5, tokenizers-0.3.0, tools, topicmodels-0.2-13, TraMineR-2.2-6, tree-1.0-43, triebeard-0.4.1, trimcluster-0.1-5, tripack-1.3-9.1, TruncatedNormal-2.2.2, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-53, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.3, tuneR-1.4.3, twang-2.5, tweedie-2.3.5, tweenr-2.0.2, tzdb-0.3.0, ucminf-1.1-4.1, udpipe-0.8.11, umap-0.2.10.0, unbalanced-2.0, unikn-0.8.0, uniqueAtomMat-0.1-3-2, units-0.8-1, unmarked-1.2.5, UpSetR-1.4.0, urca-1.3-3, urlchecker-1.0.1, urltools-1.7.3, uroot-2.1-2, usethis-2.1.6, utf8-1.2.3, utils, uuid-1.1-0, V8-4.2.2, varhandle-2.0.5, vcd-1.4-11, vcfR-1.14.0, vctrs-0.6.0, vegan-2.6-4, VennDiagram-1.7.3, VGAM-1.1-8, VIM-6.2.2, VineCopula-2.4.5, vioplot-0.4.0, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.1, visdat-0.6.0, visNetwork-2.1.2, vroom-1.6.1, VSURF-1.2.0, waldo-0.4.0, warp-0.2.0, waveslim-1.8.4, wdm-0.2.3, webshot-0.5.4, webutils-1.1, weights-1.0.4, WeightSVM-1.7-11, wellknown-0.7.4, whisker-0.4.1, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.5.0, wk-0.7.1, word2vec-0.3.4, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.4.0, xfun-0.37, xgboost-1.7.3.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.13, xml2-1.3.3, xopen-1.0.0, xtable-1.8-4, xts-0.13.0, yaImpute-1.0-33, yaml-2.3.7, yulab.utils-0.0.6, zeallot-0.1.0, zip-2.2.2, zoo-1.8-11"}, "R/4.3.2-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "askpass-1.2.0, base, base64enc-0.1-3, brew-1.0-8, brio-1.1.3, bslib-0.5.1, cachem-1.0.8, callr-3.7.3, cli-3.6.1, clipr-0.8.0, commonmark-1.9.0, compiler, cpp11-0.4.6, crayon-1.5.2, credentials-2.0.1, curl-5.1.0, datasets, desc-1.4.2, devtools-2.4.5, diffobj-0.3.5, digest-0.6.33, downlit-0.4.3, ellipsis-0.3.2, evaluate-0.23, fansi-1.0.5, fastmap-1.1.1, fontawesome-0.5.2, fs-1.6.3, gert-2.0.0, gh-1.4.0, gitcreds-0.1.2, glue-1.6.2, graphics, grDevices, grid, highr-0.10, htmltools-0.5.7, htmlwidgets-1.6.2, httpuv-1.6.12, httr-1.4.7, httr2-0.2.3, ini-0.3.1, jquerylib-0.1.4, jsonlite-1.8.7, knitr-1.45, later-1.3.1, lifecycle-1.0.3, magrittr-2.0.3, memoise-2.0.1, methods, mime-0.12, miniUI-0.1.1.1, openssl-2.1.1, parallel, pillar-1.9.0, pkgbuild-1.4.2, pkgconfig-2.0.3, pkgdown-2.0.7, pkgload-1.3.3, praise-1.0.0, prettyunits-1.2.0, processx-3.8.2, profvis-0.3.8, promises-1.2.1, ps-1.7.5, purrr-1.0.2, R6-2.5.1, ragg-1.2.6, rappdirs-0.3.3, rcmdcheck-1.4.0, Rcpp-1.0.11, rematch2-2.1.2, remotes-2.4.2.1, rlang-1.1.2, rmarkdown-2.25, roxygen2-7.2.3, rprojroot-2.0.4, rstudioapi-0.15.0, rversions-2.1.2, sass-0.4.7, sessioninfo-1.2.2, shiny-1.7.5.1, sourcetools-0.1.7-1, splines, stats, stats4, stringi-1.7.12, stringr-1.5.0, sys-3.4.2, systemfonts-1.0.5, tcltk, testthat-3.2.0, textshaping-0.3.7, tibble-3.2.1, tinytex-0.48, tools, urlchecker-1.0.1, usethis-2.2.2, utf8-1.2.4, utils, vctrs-0.6.4, waldo-0.5.2, whisker-0.4.1, withr-2.5.2, xfun-0.41, xml2-1.3.5, xopen-1.0.0, xtable-1.8-4, yaml-2.3.7, zip-2.3.0"}, "R/3.6.2-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-13, ADGofTest-0.3, aggregation-1.0.1, akima-0.6-2, AlgDesign-1.2.0, animation-2.6, aod-1.3.1, ape-5.3, argparse-2.0.1, arm-1.10-1, askpass-1.1, asnipe-1.1.12, assertthat-0.2.1, AUC-0.3.0, audio-0.1-6, b-a, backports-1.1.5, bacr-1.0.1, bartMachine-1.2.4.2, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.20, BCEE-1.2, BDgraph-2.62, bdsmatrix-1.3-3, beanplot-1.2, beeswarm-0.2.3, BH-1.69.0-1, BiasedUrn-1.07, bibtex-0.4.2, bigmemory-4.5.33, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-0, biom-0.3.12, bit-1.1-14, bit64-0.9-7, bitops-1.0-6, blob-1.2.0, BMA-3.18.11, bmp-0.3, bnlearn-4.5, bold-0.9.0, boot-1.3-23, bootstrap-2019.6, Boruta-6.0.0, brew-1.0-6, brglm-0.6.2, bridgedist-0.1.0, bridgesampling-0.7-2, Brobdingnag-1.2-6, broom-0.5.3, bst-0.3-17, c-o, Cairo-1.5-10, calibrate-1.7.5, callr-3.4.0, car-3.0-5, carData-3.0-3, caret-6.0-84, caTools-1.17.1.3, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-1.9.4, chemometrics-1.4.2, chron-2.3-54, circlize-0.4.8, circular-0.4-93, class-7.3-15, classInt-0.4-2, cli-2.0.0, clipr-0.7.0, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.4, clusterRepro-0.9, clustree-0.4.1, clValid-0.6-6, cobs-1.3-3, coda-0.19-3, codetools-0.2-16, coin-1.3-1, colorspace-1.4-1, colourpicker-1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-1.40-3, corpcor-1.6.9, corrplot-0.84, covr-3.4.0, CovSel-1.2.1, cowplot-1.0.0, crayon-1.3.4, crosstalk-1.0.0, crul-0.9.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.12.8, DBI-1.1.0, dbplyr-1.4.2, ddalpha-1.3.10, deal-1.2-39, debugme-1.1.0, deldir-0.1-23, dendextend-1.13.2, DEoptimR-1.0-8, Deriv-4.0, desc-1.2.0, deSolve-1.25, devtools-2.2.1, DHARMa-0.2.6, dHSIC-2.1, diagram-1.6.4, DiagrammeR-1.0.1, dichromat-2.0-0, digest-0.6.23, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.0-6, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, doMC-1.3.6, doParallel-1.0.15, doRNG-1.7.1, doSNOW-1.0.18, dotCall64-1.0-0, downloader-0.4, dplyr-0.8.3, dr-3.0.10, DRR-0.0.3, DT-0.10, dtangle-2.0.9, DTRreg-1.5, dtw-1.21-3, dummies-1.5.6, dynamicTreeCut-1.63-1, e1071-1.7-3, EasyABC-1.5, ellipse-0.4.1, ellipsis-0.3.0, emdbook-1.3.11, emulator-1.2-20, energy-1.7-7, entropy-1.2.1, ergm-3.10.4, ergm.count-3.4.0, evaluate-0.14, expm-0.999-4, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-11, FactoMineR-2.0, fail-1.3, fansi-0.4.0, farver-2.0.1, fastcluster-1.1.25, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-2.2-14, ffbase-0.12.7, fftw-1.0-5, fftwtools-0.9-8, fields-10.0, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.0-14, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-15, fma-2.3, FME-1.3.5, FNN-1.1.3, forcats-0.4.0, foreach-1.4.7, forecast-8.10, foreign-0.8-72, formatR-1.7, Formula-1.2-3, fossil-0.3.7, fpc-2.2-3, fpp-0.5, fracdiff-1.5-0, fs-1.3.1, futile.logger-1.4.3, futile.options-1.0.1, future-1.15.1, future.apply-1.4.0, g-r, g-r, g-r, gam-1.16.1, gamlss-5.1-5, gamlss.data-5.1-4, gamlss.dist-5.1-5, gamlss.tr-5.1-0, gap-1.2.1, gapfill-0.9.6, gbm-2.1.5, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.2-2, gee-4.13-20, geepack-1.3-1, geiger-2.0.6.2, GeneNet-1.2.13, generics-0.0.2, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-0.1.7, GGally-1.4.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.1, ggm-2.3, ggnetwork-0.5.8, ggplot2-3.2.1, ggpubr-0.3.0, ggraph-2.0.0, ggrepel-0.8.1, ggridges-0.5.1, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.5, gh-1.0.1, GillespieSSA-0.6.1, git2r-0.26.1, glasso-1.11, gllvm-1.1.7, glmmML-1.1.0, glmmTMB-0.2.3, glmnet-3.0-2, GlobalOptions-0.1.1, globals-0.12.5, glue-1.3.1, gmm-1.6-4, gmodels-2.18.1, goftest-1.2-2, gomms-1.0, gower-0.2.1, gplots-3.0.1.1, graphlayouts-0.5.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.2-1, GSA-1.03.1, gsalib-2.1, gsw-1.0-5, gtable-0.3.0, gtools-3.8.1, GUTS-1.1.1, h2o-3.26.0.2, haven-2.2.0, hdf5r-1.3.0, hdm-0.3.1, heatmap3-1.1.6, hexbin-1.28.0, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.3-0, hms-0.5.2, htmlTable-1.13.3, htmltools-0.4.0, htmlwidgets-1.5.1, httpcode-0.2.0, httpuv-1.5.2, httr-1.4.1, huge-1.3.4, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.19, idr-1.2, igraph-1.2.4.2, imager-0.41.2, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.15, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.3, irlba-2.3.3, Iso-0.0-18, ISOcodes-2019.04.22, iterators-1.0.12, itertools-0.1-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.6-10, jpeg-0.1-8.1, jsonlite-1.6, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-16, klaR-0.6-14, knitr-1.26, KODAMA-1.5, kohonen-3.0.10, ks-1.11.6, labdsv-2.0-1, labeling-0.3, labelled-2.2.1, laeken-0.5.0, lambda.r-1.2.4, LaplacesDemon-16.1.1, lars-1.2, later-1.0.0, lattice-0.20-38, latticeExtra-0.6-28, lava-1.6.6, lavaan-0.6-5, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.0, LearnBayes-2.15.1, leiden-0.3.3, lhs-1.0.1, libcoin-1.0-5, lifecycle-0.1.0, limSolve-1.5.6, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-21, lmerTest-3.1-1, Lmoments-1.3-1, lmtest-0.9-37, locfdr-1.1-8, locfit-1.5-9.1, logcondens-2.1.5, logistf-1.23, logspline-2.1.15, longitudinal-1.1.12, longmemo-1.1-1, loo-2.2.0, lpSolve-5.6.13.3, lqa-1.0-3, lsei-1.2-0, lubridate-1.7.4, m-e, magic-1.5-9, magick-2.2, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.0, maps-3.3.0, maptools-0.9-9, markdown-1.1, MASS-7.3-51.4, Matching-4.9-6, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.55.0, maxLik-1.3-6, mboost-2.9-1, mclust-5.4.5, mcmc-0.9-6, MCMCpack-1.4-5, medflex-0.6-6, mediation-4.5.0, memoise-1.1.0, memuse-4.0-0, mgcv-1.8-31, mi-1.0, mice-3.7.0, MIIVsem-0.5.4, mime-0.7, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.8-4, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mixtools-1.1.0, mlbench-2.1-1, mlegp-3.1.7, mlogit-1.0-2, mlr-2.16.0, mltools-0.3.5, mnormt-1.5-5, ModelMetrics-1.2.2, modelr-0.1.5, modeltools-0.2-22, moments-0.14, mpath-0.3-20, mRMRe-2.1.0, msm-1.6.7, multcomp-1.4-11, multicool-0.1-11, munsell-0.5.0, mvabund-4.0.1, mvnfast-0.2.5, mvtnorm-1.0-11, natserv-0.3.0, ncbit-2013.03.29, network-1.16.0, networkDynamic-0.10.0, neuRosim-0.2-12, nleqslv-3.3.2, nlme-3.1-143, nloptr-1.2.1, NLP-0.2-0, NMF-0.21.0, nnet-7.3-12, nnls-1.4, nor1mix-1.3-0, np-0.60-9, npsurv-0.4-0, numDeriv-2016.8-1.1, oce-1.1-1, OceanView-1.0.4, oddsratio-2.0.0, openssl-1.4.1, openxlsx-4.1.4, optmatch-0.9-13, optparse-1.6.4, ordinal-2019.12-10, p-a, packrat-0.5.0, pan-1.6, parallelMap-1.4, ParamHelpers-1.13, parsedate-1.2.0, party-1.3-3, partykit-1.2-5, pastecs-1.3.21, patchwork-1.0.0, pbapply-1.4-2, pbivnorm-0.6.0, pbkrtest-0.4-7, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.6, pillar-1.4.2, pim-2.0.1, pinfsc50-1.1.0, pixmap-0.4-11, pkgbuild-1.0.6, pkgconfig-2.0.3, pkgload-1.0.2, pkgmaker-0.27, plogr-0.2.0, plot3D-1.1.1, plot3Drgl-1.0.1, plotly-4.9.1, plotrix-3.7-7, pls-2.7-2, plyr-1.8.5, png-0.1-7, PoissonSeq-1.1.2, polspline-1.1.17, polyclip-1.10-0, polynom-1.4-0, prabclus-2.3-1, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.0.2, pROC-1.15.3, processx-3.4.1, prodlim-2019.11.13, profileModel-0.6.0, progress-1.2.2, promises-1.1.0, proto-1.0.0, proxy-0.4-23, pryr-0.1.4, ps-1.3.0, pscl-1.5.2, pspline-1.0-18, psych-1.8.12, pulsar-0.3.6, purrr-0.3.3, pvclust-2.2-0, qgraph-1.6.4, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4-15, quantreg-5.54, questionr-0.7.0, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.7.1, R.oo-1.23.0, R.rsp-0.43.2, R.utils-2.9.2, R6-2.4.1, randomForest-4.6-14, randomForestSRC-2.9.2, ranger-0.11.2, RANN-2.6.1, raster-3.0-7, rasterVis-0.47, Rborist-0.2-3, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.3, RcppArmadillo-0.9.800.3.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.7, RcppProgress-0.4.1, RcppRoll-0.3.0, RCurl-1.95-4.12, rda-1.0.2-2.1, Rdpack-0.11-1, readbitmap-0.1.5, readr-1.3.1, readxl-1.3.1, recipes-0.1.7, registry-0.5-1, rematch-1.0.1, rematch2-2.1.0, remotes-2.1.0, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.3, reticulate-1.13, rex-1.1.2, RGCCA-2.1.2, rgexf-0.15.3, rgl-0.100.30, RInside-0.2.15, rio-0.5.16, ritis-0.8.0, RItools-0.1-17, rJava-0.9-11, rjson-0.2.20, RJSONIO-1.3-1.3, rlang-0.4.2, rlecuyer-0.3-5, rmarkdown-2.0, rmeta-3.0, Rmpi-0.6-9, rms-5.1-4, RMTstat-0.3, rncl-0.8.3, RNeXML-2.4.0, rngtools-1.4, robustbase-0.93-5, ROCR-1.0-7, Rook-1.1-1, rootSolve-1.8.1, rotl-3.0.10, roxygen2-7.0.2, rpart-4.1-15, rprojroot-1.3-2, rrcov-1.4-9, rredlist-0.5.0, Rserve-1.7-3.1, RSNNS-0.4-12, RSQLite-2.1.4, Rssa-1.0, rstan-2.19.2, rstatix-0.5.0, rstudioapi-0.10, Rtsne-0.15, Rttf2pt1-1.3.7, RUnit-0.4.32, rversions-2.0.1, rvest-0.3.5, RWeka-0.4-41, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-2.5-1, scales-1.1.0, scatterplot3d-0.3-41, sctransform-0.2.1, SDMTools-1.1-221.2, seewave-2.1.5, segmented-1.1-0, selectr-0.4-2, sem-3.1-9, sendmailR-1.2-1, seqinr-3.6-1, sessioninfo-1.1.1, sfsmisc-1.1-4, shape-1.4.4, shapefiles-0.7, shiny-1.4.0, shinydashboard-0.7.1, shinyjs-1.1, shinythemes-1.1.2, signal-0.7-6, SignifReg-2.1, SimSeq-1.4.0, SKAT-1.3.2.1, slam-0.1-46, sm-2.2-5.6, smoother-1.1, sn-1.5-4, sna-2.5, snow-0.4-3, SnowballC-0.6.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.3-2, spam-2.5-1, spaMM-3.0.0, SparseM-1.78, spatial-7.3-11, spatstat-1.62-2, spatstat.data-1.4-0, spatstat.utils-1.15-0, spData-0.3.2, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2017.10-1, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-1, startupmsg-0.9.6, statmod-1.4.32, statnet-2019.6, statnet.common-4.3.0, stopwords-1.0, stringi-1.4.3, stringr-1.4.0, strucchange-1.5-2, subplex-1.5-4, SuperLearner-2.0-26, SuppDists-1.1-9.4, survival-3.1-8, survivalROC-1.0.3, svd-0.5, sys-3.3, t-c, t-o, taxize-0.9.91, tclust-1.4-1, TeachingDemos-2.10, tensor-1.5, tensorA-0.36.1, tergm-3.6.1, testthat-2.3.1, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.1, tibble-2.1.3, tictoc-1.0, tidygraph-1.1.2, tidyr-1.0.0, tidyselect-0.2.5, tidytext-0.2.2, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.4, tinytex-0.18, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.15, tmle-1.4.0.1, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-9, TraMineR-2.0-13, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-2.1, tripack-1.3-8, trust-0.1-7, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.0, tsne-0.1-3, TTR-0.23-6, tuneR-1.3.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-5, urca-1.3-0, urltools-1.7.3, uroot-2.1-0, usethis-1.5.1, utf8-1.1.4, uuid-0.1-2, vcd-1.4-4, vcfR-1.8.0, vctrs-0.2.0, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-2, VIM-4.8.0, vioplot-0.3.4, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.9, VSURF-1.1.0, waveslim-1.7.5.1, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.3.0, withr-2.1.2, worrms-0.4.0, WriteXLS-5.0.0, xfun-0.11, xlsx-0.6.1, xlsxjars-0.6.1, XML-3.98-1.20, xml2-1.2.2, xopen-1.0.0, xtable-1.8-4, xts-0.11-2, yaImpute-1.0-32, yaml-2.2.0, zeallot-0.1.0, zip-2.0.4, zoo-1.8-6"}, "R/4.0.0-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-15, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-0, akima-0.6-2, AlgDesign-1.2.0, animation-2.6, aod-1.3.1, ape-5.3, argparse-2.0.1, arm-1.11-1, askpass-1.1, asnipe-1.1.12, assertive-0.3-6, assertive.base-0.0-7, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.4-3, awsMethods-1.1-1, b-a, backports-1.1.6, bacr-1.0.1, bartMachine-1.2.4.2, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.7.1, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.62, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, betareg-3.1-3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.2, BIGL-1.4.3, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-1.1-15.2, bit64-0.9-7, bitops-1.0-6, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.5, bold-0.9.0, boot-1.3-25, bootstrap-2019.6, Boruta-6.0.0, brew-1.0-6, brglm-0.6.2, bridgedist-0.1.0, bridgesampling-1.0-0, brms-2.12.0, Brobdingnag-1.2-6, broom-0.5.6, bst-0.3-17, c-o, Cairo-1.5-12, calibrate-1.7.5, callr-3.4.3, car-3.0-7, carData-3.0-3, caret-6.0-86, caTools-1.18.0, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-55, circlize-0.4.8, circular-0.4-93, class-7.3-17, classInt-0.4-3, cli-2.0.2, clipr-0.7.0, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.4, clusterRepro-0.9, clustree-0.4.2, clValid-0.6-6, cobs-1.3-4, coda-0.19-3, codetools-0.2-16, coin-1.3-1, colorspace-1.4-1, colourpicker-1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-1.40-5, copCAR-2.0-3, corpcor-1.6.9, corrplot-0.84, covr-3.5.0, CovSel-1.2.1, cowplot-1.0.0, coxed-0.3.3, coxme-2.2-16, crayon-1.3.4, crosstalk-1.1.0.1, crul-0.9.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.12.8, data.tree-1.0.0, dbarts-0.9-18, DBI-1.1.0, dbplyr-1.4.3, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.1-25, dendextend-1.13.4, DEoptimR-1.0-8, Deriv-4.0, desc-1.2.0, DescTools-0.99.38, deSolve-1.28, devtools-2.3.0, DHARMa-0.3.0, dHSIC-2.1, diagram-1.6.4, DiagrammeR-1.0.5, dichromat-2.0-0, digest-0.6.25, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.0-7, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, doMC-1.3.6, doParallel-1.0.15, doRNG-1.8.2, doSNOW-1.0.18, dotCall64-1.0-0, downloader-0.4, dplyr-0.8.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.13, dtangle-2.0.9, DTRreg-1.5, dtw-1.21-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-3, earth-5.1.2, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.1, ellipsis-0.3.0, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, ENMeval-0.3.0, entropy-1.2.1, EnvStats-2.3.1, ergm-3.10.4, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-4, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-11, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-2.2-14.2, ffbase-0.12.8, fftw-1.0-6, fftwtools-0.9-8, fields-10.3, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.0-14, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-15, fma-2.4, FME-1.3.6.1, FNN-1.1.3, forcats-0.5.0, foreach-1.5.0, forecast-8.12, foreign-0.8-79, formatR-1.7, Formula-1.2-3, fossil-0.4.0, fpc-2.2-5, fpp-0.5, fracdiff-1.5-1, fs-1.4.1, futile.logger-1.4.3, futile.options-1.0.1, future-1.17.0, future.apply-1.4.0, g-r, g-r, g-r, gam-1.16.1, gamlss-5.1-6, gamlss.data-5.1-4, gamlss.dist-5.1-6, gamlss.tr-5.1-0, gap-1.2.2, gapfill-0.9.6, gaussquad-1.0-2, gbm-2.1.5, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-1, gee-4.13-20, geepack-1.3-1, geiger-2.0.6.4, GeneNet-1.2.14, generics-0.0.2, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-0.1.8, GGally-1.5.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.1, ggnetwork-0.5.8, ggplot2-3.3.0, ggpubr-0.3.0, ggraph-2.0.2, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.5, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.26.1, glasso-1.11, gld-2.6.2, gllvm-1.2.1, glmmML-1.1.0, glmmTMB-1.0.1, glmnet-3.0-2, GlobalOptions-0.1.1, globals-0.12.5, glue-1.4.0, gmm-1.6-4, gmodels-2.18.1, gmp-0.5-13.6, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.1, gplots-3.0.3, graphlayouts-0.7.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.2.2, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gtable-0.3.0, gtools-3.8.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, h2o-3.30.0.1, hal9001-0.2.7, haven-2.2.0, hdf5r-1.3.2, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.4-0, hms-0.5.3, htmlTable-1.13.3, htmltools-0.4.0, htmlwidgets-1.5.1, httpcode-0.3.0, httpuv-1.5.2, httr-1.4.1, huge-1.3.4.1, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.5, imager-0.42.1, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.15, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.4.1, irlba-2.3.3, Iso-0.0-18, isoband-0.2.1, ISOcodes-2020.03.16, iterators-1.0.12, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.6-10, jpeg-0.1-8.1, jsonlite-1.6.1, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-17, klaR-0.6-15, knitr-1.28, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.3, labelled-2.3.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, later-1.0.0, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.7, lavaan-0.6-5, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.3, lhs-1.0.2, libcoin-1.0-5, lifecycle-0.2.0, limSolve-1.5.6, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-23, lmerTest-3.1-2, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-37, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.23, logspline-2.1.15, longitudinal-1.1.12, longmemo-1.1-2, loo-2.2.0, lpSolve-5.6.15, lqa-1.0-3, lsei-1.2-0, lubridate-1.7.8, m-e, magic-1.5-9, magick-2.3, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-0.9-9, markdown-1.1, MASS-7.3-51.6, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.56.0, maxLik-1.3-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-2, mclust-5.4.6, mcmc-0.9-7, MCMCpack-1.4-6, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-6, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, mgcv-1.8-31, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.8.0, MIIVsem-0.5.4, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.8-4, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mitools-2.4, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.7, mlogit-1.0-3.1, mlr-2.17.1, mltools-0.3.5, mnormt-1.5-6, ModelMetrics-1.2.2.2, modelr-0.1.6, modeltools-0.2-23, moments-0.14, mpath-0.3-25, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-13, multicool-0.1-11, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5, mvtnorm-1.1-0, natserv-0.4.0, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.0, networkDynamic-0.10.1, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-147, nloptr-1.2.2.1, NLP-0.2-0, nlsem-0.8, nnet-7.3-14, nnls-1.4, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.4-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.0, openssl-1.4.1, openxlsx-4.1.4, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pan-1.6, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-4, partykit-1.2-7, pastecs-1.3.21, patchwork-1.0.0, pbapply-1.4-2, pbivnorm-0.6.0, pbkrtest-0.4-8.6, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, pillar-1.4.3, pim-2.0.2, pinfsc50-1.1.0, pixmap-0.4-11, pkgbuild-1.0.7, pkgconfig-2.0.3, pkgload-1.0.2, pkgmaker-0.31.1, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2.1, plotmo-3.5.7, plotrix-3.7-8, pls-2.7-2, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.17, polyclip-1.10-0, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.2, processx-3.4.2, prodlim-2019.11.13, profileModel-0.6.0, proftools-0.99-3, progress-1.2.2, promises-1.1.0, proto-1.0.0, proxy-0.4-24, pryr-0.1.4, ps-1.3.2, pscl-1.5.5, pspline-1.0-18, psych-1.9.12.31, pulsar-0.3.6, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.17, quantreg-5.55, questionr-0.7.0, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.0, R.oo-1.23.0, R.rsp-0.43.2, R.utils-2.9.2, R6-2.4.1, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.1-5, rasterVis-0.47, Rborist-0.2-3, RCAL-2.0, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.4.6, RcppArmadillo-0.9.870.2.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.7, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-0.11-1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.3.1, readxl-1.3.1, recipes-0.1.10, RefFreeEWAS-2.2, registry-0.5-1, rematch-1.0.1, rematch2-2.1.1, remotes-2.1.1, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.15, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.54, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.16, ritis-0.9.0, RItools-0.1-17, rJava-0.9-12, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.5, rlecuyer-0.3-5, rmarkdown-2.1, rmeta-3.0, Rmpi-0.6-9, rms-5.1-4, RMTstat-0.3, rncl-0.8.4, RNeXML-2.4.3, rngtools-1.5, robustbase-0.93-6, ROCR-1.0-7, ROI-0.3-3, ROI.plugin.glpk-0.3-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.10, roxygen2-7.1.0, rpart-4.1-15, RPMM-1.25, rprojroot-1.3-2, rrcov-1.5-2, rredlist-0.6.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, RSQLite-2.2.0, Rssa-1.0.2, rstan-2.19.3, rstantools-2.0.0, rstatix-0.5.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.1, rvest-0.3.5, RWeka-0.4-42, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-2.5-1, scales-1.1.0, scatterplot3d-0.3-41, sctransform-0.2.1, SDMTools-1.1-221.2, seewave-2.1.5, segmented-1.1-0, selectr-0.4-2, sem-3.1-9, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-3.6-1, servr-0.16, sessioninfo-1.1.1, sfsmisc-1.1-6, shape-1.4.4, shapefiles-0.7, shiny-1.4.0.2, shinydashboard-0.7.1, shinyjs-1.1, shinystan-2.5.0, shinythemes-1.1.2, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.0, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.6-1, sna-2.5, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-1, spaa-0.2.2, spam-2.5-1, spaMM-3.2.0, SparseM-1.78, SPAtest-3.0.2, spatial-7.3-12, spatstat-1.63-3, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.5, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.2, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-1, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.34, statnet-2019.6, statnet.common-4.3.0, stdReg-3.4.0, stopwords-2.0, stringi-1.4.6, stringr-1.4.0, strucchange-1.5-2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.1-12, survivalROC-1.0.3, svd-0.5, sys-3.3, t-c, t-o, tableone-0.12.0, taxize-0.9.95, tcltk2-1.2-11, tclust-1.4-1, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.1, tergm-3.6.1, testit-0.11, testthat-2.3.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.0.1, tictoc-1.0, tidygraph-1.1.2, tidyr-1.0.2, tidyselect-1.0.0, tidytext-0.2.4, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.4, tinytex-0.22, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.16, tmle-1.4.0.1, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-11, TraMineR-2.2-0, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.23-6, tuneR-1.3.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-6, unmarked-1.0.1, urca-1.3-0, urltools-1.7.3, uroot-2.1-0, usethis-1.6.1, utf8-1.1.4, uuid-0.1-4, vcd-1.4-7, vcfR-1.10.0, vctrs-0.2.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-3, VIM-5.1.1, vioplot-0.3.4, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.9, VSURF-1.1.0, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.3.0, withr-2.2.0, wordcloud-2.6, worrms-0.4.0, WriteXLS-5.0.0, xfun-0.13, xlsx-0.6.3, xlsxjars-0.6.1, XML-3.99-0.3, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12-0, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.0.4, zoo-1.8-7"}, "R/4.0.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.1, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.5, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.1, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.3.1, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.6, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.3.2, dfidx-0.0-4, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.3, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.13, foreign-0.8-81, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-1, gamlss.data-5.1-4, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.2.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.7, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-10, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.0, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-6, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.18, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.3-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.23.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.2, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.4.5, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.12, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.10.1, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50, rbibutils-2.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.3, reprex-1.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.1-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.3, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-7, sfsmisc-1.1-8, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.2, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-1.64-1, spatstat.data-2.0-0, spatstat.utils-2.0-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-7, timeDate-3043.102, timereg-1.9.8, tinytex-0.30, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-0, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.6, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.2.0, xfun-0.21, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9"}, "R/4.0.5-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.15.0, Brobdingnag-1.2-6, broom-0.7.6, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.6.0, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.4.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.7, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.1, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.4.0, dfidx-0.0-4, DHARMa-0.4.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.4, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-6, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.14, foreign-0.8-81, formatR-1.8, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.3.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.1, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.1, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.8, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-11, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.2, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.9, lavaan-0.6-8, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.1, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.1-1, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.19, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.4-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.6.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.24.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.6.3, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.1, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.5.1, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.3, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.11.0, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50.1, rbibutils-2.1, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.3, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.3.0, rentrez-1.2.3, reprex-2.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.5, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-8, sfsmisc-1.1-10, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-2.0.0, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.34, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-2.1-0, spatstat.core-2.0-0, spatstat.data-2.1-0, spatstat.geom-2.0-1, spatstat.linnet-2.1-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.4.1, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-10, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-8, timeDate-3043.102, timereg-1.9.8, tinytex-0.31, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.2, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-1, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.2.1, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.7, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.6, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.22, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.6, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9"}, "R/3.6.3-foss-2020a": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-15, ADGofTest-0.3, aggregation-1.0.1, akima-0.6-2, AlgDesign-1.2.0, animation-2.6, aod-1.3.1, ape-5.3, argparse-2.0.1, arm-1.10-1, askpass-1.1, asnipe-1.1.12, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, b-a, backports-1.1.5, bacr-1.0.1, bartMachine-1.2.4.2, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.2, BDgraph-2.62, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, bit-1.1-15.2, bit64-0.9-7, bitops-1.0-6, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.5, bold-0.9.0, boot-1.3-24, bootstrap-2019.6, Boruta-6.0.0, brew-1.0-6, brglm-0.6.2, bridgedist-0.1.0, bridgesampling-1.0-0, Brobdingnag-1.2-6, broom-0.5.5, bst-0.3-17, c-o, Cairo-1.5-11, calibrate-1.7.5, callr-3.4.2, car-3.0-7, carData-3.0-3, caret-6.0-85, caTools-1.18.0, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-55, circlize-0.4.8, circular-0.4-93, class-7.3-15, classInt-0.4-2, cli-2.0.2, clipr-0.7.0, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.4, clusterRepro-0.9, clustree-0.4.2, clValid-0.6-6, cobs-1.3-4, coda-0.19-3, codetools-0.2-16, coin-1.3-1, colorspace-1.4-1, colourpicker-1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-1.40-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.0, CovSel-1.2.1, cowplot-1.0.0, crayon-1.3.4, crosstalk-1.1.0.1, crul-0.9.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.12.8, DBI-1.1.0, dbplyr-1.4.2, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.1-25, dendextend-1.13.4, DEoptimR-1.0-8, Deriv-4.0, desc-1.2.0, deSolve-1.28, devtools-2.2.2, DHARMa-0.2.7, dHSIC-2.1, diagram-1.6.4, DiagrammeR-1.0.5, dichromat-2.0-0, digest-0.6.25, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.0-6, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, doMC-1.3.6, doParallel-1.0.15, doRNG-1.8.2, doSNOW-1.0.18, dotCall64-1.0-0, downloader-0.4, dplyr-0.8.5, dr-3.0.10, DRR-0.0.4, DT-0.12, dtangle-2.0.9, DTRreg-1.5, dtw-1.21-3, dummies-1.5.6, dynamicTreeCut-1.63-1, e1071-1.7-3, EasyABC-1.5, ellipse-0.4.1, ellipsis-0.3.0, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, entropy-1.2.1, ergm-3.10.4, ergm.count-3.4.0, evaluate-0.14, expm-0.999-4, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-11, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-2.2-14.2, ffbase-0.12.8, fftw-1.0-6, fftwtools-0.9-8, fields-10.3, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.0-14, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-15, fma-2.4, FME-1.3.6.1, FNN-1.1.3, forcats-0.5.0, foreach-1.4.8, forecast-8.11, foreign-0.8-76, formatR-1.7, Formula-1.2-3, fossil-0.3.7, fpc-2.2-5, fpp-0.5, fracdiff-1.5-1, fs-1.3.2, futile.logger-1.4.3, futile.options-1.0.1, future-1.16.0, future.apply-1.4.0, g-r, g-r, g-r, gam-1.16.1, gamlss-5.1-6, gamlss.data-5.1-4, gamlss.dist-5.1-6, gamlss.tr-5.1-0, gap-1.2.2, gapfill-0.9.6, gbm-2.1.5, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-1, gee-4.13-20, geepack-1.3-1, geiger-2.0.6.4, GeneNet-1.2.14, generics-0.0.2, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-0.1.8, GGally-1.4.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.1, ggnetwork-0.5.8, ggplot2-3.3.0, ggpubr-0.3.0, ggraph-2.0.2, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.5, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.26.1, glasso-1.11, gllvm-1.2.1, glmmML-1.1.0, glmmTMB-1.0.1, glmnet-3.0-2, GlobalOptions-0.1.1, globals-0.12.5, glue-1.3.2, gmm-1.6-4, gmodels-2.18.1, gmp-0.5-13.6, goftest-1.2-2, gomms-1.0, gower-0.2.1, gplots-3.0.3, graphlayouts-0.6.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.2.2, GSA-1.03.1, gsalib-2.1, gsw-1.0-5, gtable-0.3.0, gtools-3.8.1, GUTS-1.1.1, h2o-3.28.0.4, haven-2.2.0, hdf5r-1.3.1, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.3-1, hms-0.5.3, htmlTable-1.13.3, htmltools-0.4.0, htmlwidgets-1.5.1, httpcode-0.2.0, httpuv-1.5.2, httr-1.4.1, huge-1.3.4, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, igraph-1.2.5, imager-0.42.1, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.15, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.3, irlba-2.3.3, Iso-0.0-18, isoband-0.2.0, ISOcodes-2020.03.16, iterators-1.0.12, itertools-0.1-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.6-10, jpeg-0.1-8.1, jsonlite-1.6.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-16, klaR-0.6-15, knitr-1.28, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.3, labelled-2.2.2, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, later-1.0.0, lattice-0.20-40, latticeExtra-0.6-29, lava-1.6.7, lavaan-0.6-5, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.3, lhs-1.0.1, libcoin-1.0-5, lifecycle-0.2.0, limSolve-1.5.6, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-21, lmerTest-3.1-1, Lmoments-1.3-1, lmtest-0.9-37, locfdr-1.1-8, locfit-1.5-9.1, logcondens-2.1.5, logistf-1.23, logspline-2.1.15, longitudinal-1.1.12, longmemo-1.1-2, loo-2.2.0, lpSolve-5.6.15, lqa-1.0-3, lsei-1.2-0, lubridate-1.7.4, m-e, magic-1.5-9, magick-2.3, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-0.9-9, markdown-1.1, MASS-7.3-51.5, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.56.0, maxLik-1.3-8, mboost-2.9-2, mclust-5.4.5, mcmc-0.9-6.1, MCMCpack-1.4-6, medflex-0.6-6, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, mgcv-1.8-31, mi-1.0, mice-3.8.0, MIIVsem-0.5.4, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.8-4, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.7, mlogit-1.0-3.1, mlr-2.17.0, mltools-0.3.5, mnormt-1.5-6, ModelMetrics-1.2.2.2, modelr-0.1.6, modeltools-0.2-23, moments-0.14, mpath-0.3-23, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-12, multicool-0.1-11, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5, mvtnorm-1.1-0, natserv-0.3.0, ncbit-2013.03.29, network-1.16.0, networkDynamic-0.10.1, neuRosim-0.2-12, nleqslv-3.3.2, nlme-3.1-145, nloptr-1.2.2.1, NLP-0.2-0, nnet-7.3-13, nnls-1.4, nor1mix-1.3-0, np-0.60-10, npsurv-0.4-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.0, openssl-1.4.1, openxlsx-4.1.4, optmatch-0.9-13, optparse-1.6.4, ordinal-2019.12-10, p-a, packrat-0.5.0, pan-1.6, parallelMap-1.4, ParamHelpers-1.13, parsedate-1.2.0, party-1.3-4, partykit-1.2-7, pastecs-1.3.21, patchwork-1.0.0, pbapply-1.4-2, pbivnorm-0.6.0, pbkrtest-0.4-8.6, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, pillar-1.4.3, pim-2.0.2, pinfsc50-1.1.0, pixmap-0.4-11, pkgbuild-1.0.6, pkgconfig-2.0.3, pkgload-1.0.2, pkgmaker-0.31.1, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2, plotrix-3.7-7, pls-2.7-2, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, polspline-1.1.17, polyclip-1.10-0, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.1, processx-3.4.2, prodlim-2019.11.13, profileModel-0.6.0, progress-1.2.2, promises-1.1.0, proto-1.0.0, proxy-0.4-23, pryr-0.1.4, ps-1.3.2, pscl-1.5.5, pspline-1.0-18, psych-1.9.12.31, pulsar-0.3.6, purrr-0.3.3, pvclust-2.2-0, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4-16, quantreg-5.54, questionr-0.7.0, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.0, R.oo-1.23.0, R.rsp-0.43.2, R.utils-2.9.2, R6-2.4.1, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.0-12, rasterVis-0.47, Rborist-0.2-3, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.4, RcppArmadillo-0.9.850.1.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.7, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.1, rda-1.0.2-2.1, Rdpack-0.11-1, readbitmap-0.1.5, readr-1.3.1, readxl-1.3.1, recipes-0.1.10, registry-0.5-1, rematch-1.0.1, rematch2-2.1.0, remotes-2.1.1, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.3, reticulate-1.14, rex-1.1.2, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.50, RInside-0.2.16, rio-0.5.16, ritis-0.8.0, RItools-0.1-17, rJava-0.9-11, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.5, rlecuyer-0.3-5, rmarkdown-2.1, rmeta-3.0, Rmpi-0.6-9, rms-5.1-4, RMTstat-0.3, rncl-0.8.4, RNeXML-2.4.3, rngtools-1.5, robustbase-0.93-5, ROCR-1.0-7, Rook-1.1-1, rootSolve-1.8.2, rotl-3.0.10, roxygen2-7.1.0, rpart-4.1-15, rprojroot-1.3-2, rrcov-1.5-2, rredlist-0.6.0, Rserve-1.7-3.1, RSNNS-0.4-12, RSQLite-2.2.0, Rssa-1.0.2, rstan-2.19.3, rstatix-0.5.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, rversions-2.0.1, rvest-0.3.5, RWeka-0.4-42, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-2.5-1, scales-1.1.0, scatterplot3d-0.3-41, sctransform-0.2.1, SDMTools-1.1-221.2, seewave-2.1.5, segmented-1.1-0, selectr-0.4-2, sem-3.1-9, sendmailR-1.2-1, seqinr-3.6-1, servr-0.16, sessioninfo-1.1.1, sfsmisc-1.1-5, shape-1.4.4, shapefiles-0.7, shiny-1.4.0.2, shinydashboard-0.7.1, shinyjs-1.1, shinythemes-1.1.2, signal-0.7-6, SignifReg-2.1, SimSeq-1.4.0, SKAT-2.0.0, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.5-5, sna-2.5, snow-0.4-3, SnowballC-0.6.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-1, spam-2.5-1, spaMM-3.1.27, SparseM-1.78, SPAtest-3.0.2, spatial-7.3-11, spatstat-1.63-3, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.3, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.2, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-1, startupmsg-0.9.6, statmod-1.4.34, statnet-2019.6, statnet.common-4.3.0, stopwords-1.0, stringi-1.4.6, stringr-1.4.0, strucchange-1.5-2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survival-3.1-11, survivalROC-1.0.3, svd-0.5, sys-3.3, t-c, t-o, taxize-0.9.92, tclust-1.4-1, TeachingDemos-2.10, tensor-1.5, tensorA-0.36.1, tergm-3.6.1, testthat-2.3.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-2.1.3, tictoc-1.0, tidygraph-1.1.2, tidyr-1.0.2, tidyselect-1.0.0, tidytext-0.2.3, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.4, tinytex-0.20, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.16, tmle-1.4.0.1, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-9, TraMineR-2.0-15, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.23-6, tuneR-1.3.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-6, urca-1.3-0, urltools-1.7.3, uroot-2.1-0, usethis-1.5.1, utf8-1.1.4, uuid-0.1-4, vcd-1.4-6, vcfR-1.10.0, vctrs-0.2.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-2, VIM-5.1.1, vioplot-0.3.4, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.9, VSURF-1.1.0, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.3.0, withr-2.1.2, worrms-0.4.0, WriteXLS-5.0.0, xfun-0.12, xlsx-0.6.3, xlsxjars-0.6.1, XML-3.99-0.3, xml2-1.2.5, xopen-1.0.0, xtable-1.8-4, xts-0.12-0, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.0.4, zoo-1.8-7"}, "R/4.0.3-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.13, assertive-0.3-6, assertive.base-0.0-7, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5, awsMethods-1.1-1, b-a, backports-1.2.0, bacr-1.0.1, bartMachine-1.2.5.1, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.7.2, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, betareg-3.1-3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.5.3, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-12, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-25, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.0, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.2, bst-0.3-22, c-o, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.0, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.11, circular-0.4-93, class-7.3-17, classInt-0.4-3, cli-2.1.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.5, clusterRepro-0.9, clustree-0.4.3, clValid-0.6-9, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.3-1, colorspace-1.4-1, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-0, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-3, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.0, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.4, crayon-1.3.4, crosstalk-1.1.0.1, crul-1.0.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.13.2, data.tree-1.0.0, dbarts-0.9-18, DBI-1.1.0, dbplyr-2.0.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-2, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.1, desc-1.2.0, DescTools-0.99.38, deSolve-1.28, devtools-2.3.2, dfidx-0.0-3, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.2, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.1, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-0, downloader-0.4, dplyr-1.0.2, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.16, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-5, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-12, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-4.0.4, ffbase-0.13.1, fftw-1.0-6, fftwtools-0.9-9, fields-11.6, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.1-1, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.0, foreach-1.5.1, forecast-8.13, foreign-0.8-80, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-8, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.20.1, future.apply-1.6.0, g-r, g-r, g-r, gam-1.20, gamlss-5.2-0, gamlss.data-5.1-4, gamlss.dist-5.1-7, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-1, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-1.0.4, GGally-2.0.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.2, ggnetwork-0.5.8, ggplot2-3.3.2, ggpubr-0.4.0, ggraph-2.0.3, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.6, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.27.1, glasso-1.11, gld-2.6.2, gllvm-1.2.2, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.0-2, GlobalOptions-0.1.2, globals-0.13.1, glue-1.4.2, gmm-1.6-5, gmodels-2.18.1, gmp-0.6-1, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.0, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gtable-0.3.0, gtools-3.8.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.4-1, hms-0.5.3, htmlTable-2.1.0, htmltools-0.5.0, htmlwidgets-1.5.2, httpcode-0.3.0, httpuv-1.5.4, httr-1.4.2, huge-1.3.4.1, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.3, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.16, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.2, ISOcodes-2020.03.16, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jsonlite-1.7.1, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.30, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.4.2, labelled-2.7.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.4, lhs-1.1.1, libcoin-1.0-6, lifecycle-0.2.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-25, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.3.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.9, m-e, magic-1.5-9, magick-2.5.1, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.57.0, maxLik-1.4-4, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-3, mclust-5.4.6, mcmc-0.9-7, MCMCpack-1.4-9, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-33, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.11.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mitools-2.4, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.8, mlogit-1.1-1, mlr-2.18.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.3-26, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-14, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-150, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-14, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.1, OpenCL-0.2-1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pan-1.6, parallelly-1.21.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-5, partykit-1.2-10, pastecs-1.3.21, patchwork-1.0.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.4-8.6, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.4.6, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-11, pkgbuild-1.1.0, pkgconfig-2.0.3, pkgload-1.1.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2.1, plotmo-3.6.0, plotrix-3.7-8, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.2, processx-3.4.4, prodlim-2019.11.13, profileModel-0.6.0, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.1.1, proto-1.0.0, proxy-0.4-24, pryr-0.1.4, ps-1.4.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.9, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.17, quantreg-5.75, questionr-0.7.3, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.3-13, rasterVis-0.49, rbibutils-1.4, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.5, RcppArmadillo-0.10.1.0.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.8, RcppParallel-5.0.2, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.0, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.14, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.54, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.16, ritis-0.9.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.8, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.5, rmeta-3.0, Rmpi-0.6-9, rms-6.0-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-6, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-1.3-2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.1, Rssa-1.0.2, rstan-2.21.2, rstantools-2.1.1, rstatix-0.6.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-0.3.6, RViennaCL-1.7.1.8, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-3.0-0, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.1, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-0, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-4, servr-0.20, sessioninfo-1.1.1, setRNG-2013.9-1, sfsmisc-1.1-7, shape-1.4.5, shapefiles-0.7, shiny-1.5.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.1.2, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-4, spaa-0.2.2, spam-2.5-1, spaMM-3.5.0, SparseM-1.78, SPAtest-3.1.2, spatial-7.3-12, spatstat-1.64-1, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.5, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-6, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.0, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.1, tergm-3.7.0, testit-0.12, testthat-3.0.0, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.0.4, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.2, tidyselect-1.1.0, tidytext-0.2.6, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.8, tinytex-0.27, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.18, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-11, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-7, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-1.6.3, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-4, VIM-6.0.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.2, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.3.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.0.0, xfun-0.19, xgboost-1.4.1.1, xlsx-0.6.4.2, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-8"}, "R/4.0.4-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.1, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.5, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.1, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.3.1, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.6, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.3.2, dfidx-0.0-4, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.3, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.13, foreign-0.8-81, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-1, gamlss.data-5.1-4, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.2.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.7, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-10, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.0, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-6, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.18, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.3-0, OceanView-1.0.5, oddsratio-2.0.1, OpenCL-0.2-1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.23.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.2, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.4.5, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.12, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.10.1, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50, rbibutils-2.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.3, reprex-1.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.1-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.3, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, RViennaCL-1.7.1.8, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-7, sfsmisc-1.1-8, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.2, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-1.64-1, spatstat.data-2.0-0, spatstat.utils-2.0-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-7, timeDate-3043.102, timereg-1.9.8, tinytex-0.30, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-0, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.6, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.2.0, xfun-0.21, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9"}, "R/4.0.5-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.15.0, Brobdingnag-1.2-6, broom-0.7.6, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.6.0, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.4.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.7, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.1, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.4.0, dfidx-0.0-4, DHARMa-0.4.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.4, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-6, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.14, foreign-0.8-81, formatR-1.8, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.3.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.1, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.1, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.8, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-11, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.2, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.9, lavaan-0.6-8, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.1, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.1-1, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.19, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.4-0, OceanView-1.0.5, oddsratio-2.0.1, OpenCL-0.2-1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.6.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.24.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.6.3, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.1, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.5.1, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.3, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.11.0, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50.1, rbibutils-2.1, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.3, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.3.0, rentrez-1.2.3, reprex-2.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.5, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, RViennaCL-1.7.1.8, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-8, sfsmisc-1.1-10, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-2.0.0, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.34, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-2.1-0, spatstat.core-2.0-0, spatstat.data-2.1-0, spatstat.geom-2.0-1, spatstat.linnet-2.1-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.4.1, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-10, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-8, timeDate-3043.102, timereg-1.9.8, tinytex-0.31, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.2, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-1, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.2.1, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.7, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.6, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.22, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.6, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9"}}, "description": "R is a free software environment for statistical computing and graphics.", "homepage": "https://www.r-project.org/"}, "R2jags": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"R2jags/0.7-1-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Providing wrapper functions to implement Bayesian analysis in JAGS.", "homepage": "https://cran.r-project.org/web/packages/R2jags"}, "Racon": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Racon/1.4.21-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Racon/1.5.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Racon/1.5.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Racon/1.5.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Racon/1.4.13-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Racon/1.4.13-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Racon/1.4.21-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.", "homepage": "https://github.com/lbcb-sci/racon"}, "radian": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"radian/0.6.9-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "prompt-toolkit-3.0.43, radian-0.6.9, rchitect-0.4.4"}}, "description": "radian is an alternative console for the R program with multiline editing and rich syntax highlight.", "homepage": "https://github.com/randy3k/radian"}, "RapidJSON": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RapidJSON/1.1.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RapidJSON/1.1.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RapidJSON/1.1.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RapidJSON/1.1.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RapidJSON/1.1.0-20230928-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A fast JSON parser/generator for C++ with both SAX/DOM style API", "homepage": "https://rapidjson.org"}, "rasterio": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"rasterio/1.2.10-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "affine-2.3.1, boto3-1.24.3, botocore-1.27.3, click-plugins-1.1.1, cligj-0.7.2, jmespath-1.0.0, rasterio-1.2.10, s3transfer-0.6.0, snuggs-1.4.7"}, "rasterio/1.3.8-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "affine-2.4.0, click-plugins-1.1.1, cligj-0.7.2, rasterio-1.3.8, snuggs-1.4.7"}, "rasterio/1.1.7-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "affine-2.3.0, attrs-20.2.0, boto3-1.15.16, botocore-1.18.16, click-7.1.2, click-plugins-1.1.1, cligj-0.5.0, jmespath-0.10.0, rasterio-1.1.7, s3transfer-0.3.3, snuggs-1.4.7"}}, "description": "Rasterio reads and writes geospatial raster data.", "homepage": "https://github.com/mapbox/rasterio"}, "Raven": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Raven/1.8.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Raven-1.8.1"}}, "description": "Raven is a de novo genome assembler for long uncorrected reads.", "homepage": "https://github.com/lbcb-sci/raven"}, "RAxML-NG": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RAxML-NG/1.2.0-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RAxML-NG/0.9.0-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "RAxML-NG/1.0.3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}, "RAxML-NG/0.9.0-GCC-8.3.0": {"clusters": ["donphan", "joltik"]}}, "description": "RAxML-NG is a phylogenetic tree inference tool whichuses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree.", "homepage": "https://github.com/amkozlov/raxml-ng"}, "RAxML": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"RAxML/8.2.12-iimpi-2021b-hybrid-avx2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "RAxML/8.2.12-iimpi-2019b-hybrid-avx2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.", "homepage": "https://github.com/stamatak/standard-RAxML"}, "Ray-project": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Ray-project/1.13.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "aiosignal-1.2.0, frozenlist-1.3.0, grpcio-1.43.0, Ray-1.13.0"}, "Ray-project/1.13.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "aiosignal-1.2.0, frozenlist-1.3.0, grpcio-1.43.0, Ray-1.13.0"}, "Ray-project/0.8.4-foss-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "aiohttp-3.6.2, async-timeout-3.0.1, beautifulsoup4-4.9.0, click-7.1.1, colorama-0.4.3, filelock-3.0.12, google-2.0.3, grpcio-1.28.1, idna-ssl-1.1.0, importlib-metadata-1.6.0, jsonschema-3.2.0, lz4-3.0.2, msgpack-1.0.0, multidict-4.7.5, multidict-4.7.5, py-spy-0.3.3, pyrsistent-0.16.0, Ray-0.8.4, redis-3.4.1, soupsieve-2.0, typing-extensions-3.7.4.2, yarl-1.4.2"}}, "description": "Ray is a fast and simple framework for building and running distributed applications.", "homepage": "https://docs.ray.io/en/latest/"}, "rclone": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"rclone/1.65.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Rclone is a command line program to sync files and directories to and from a variety of online storage services", "homepage": "https://rclone.org"}, "RDFlib": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"RDFlib/6.2.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "isodate-0.6.1, rdflib-6.2.0"}, "RDFlib/4.2.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "isodate-0.6.0, rdflib-4.2.2"}, "RDFlib/5.0.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "isodate-0.6.0, rdflib-5.0.0"}}, "description": "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.", "homepage": "https://github.com/RDFLib/rdflib"}, "RDKit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RDKit/2022.03.5-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "RDKit/2022.09.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RDKit/2020.03.3-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "RDKit/2020.09.3-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "RDKit is a collection of cheminformatics and machine-learning software written in C++ and Python.", "homepage": "https://www.rdkit.org"}, "RDP-Classifier": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"RDP-Classifier/2.13-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "RDP-Classifier/2.12-Java-1.8": {"clusters": ["skitty"]}}, "description": "The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment.", "homepage": "http://sourceforge.net/projects/rdp-classifier"}, "RE2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RE2/2022-02-01-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RE2/2022-06-01-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RE2/2023-03-01-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RE2/2023-08-01-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "RE2 is a fast, safe, thread-friendly alternative to backtracking regularexpression engines like those used in PCRE, Perl, and Python. It is a C++library.", "homepage": "https://github.com/google/re2"}, "re2c": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"re2c/1.2.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "re2c/2.0.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "re2c/2.1.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "re2c/2.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "re2c/2.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "re2c/3.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "re2c/3.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "re2c/1.3-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "re2c is a free and open-source lexer generator for C and C++. Its main goal is generatingfast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of usingtraditional table-driven approach, re2c encodes the generated finite state automata directly in the formof conditional jumps and comparisons.", "homepage": "https://re2c.org/"}, "redis-py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"redis-py/4.3.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "async-timeout-4.0.2, Deprecated-1.2.13, redis-py-4.3.1, wrapt-1.14.1"}, "redis-py/4.3.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "async-timeout-4.0.2, Deprecated-1.2.13, redis-py-4.3.3, wrapt-1.14.1"}, "redis-py/4.5.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "async-timeout-4.0.2, redis-py-4.5.1"}}, "description": "The Python interface to the Redis key-value store.", "homepage": "https://github.com/redis/redis-py"}, "Redis": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Redis/6.2.6-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Redis/6.2.6-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Redis/7.0.8-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Redis is an open source (BSD licensed), in-memory data structure store, used asa database, cache, and message broker. Redis provides data structures such asstrings, hashes, lists, sets, sorted sets with range queries, bitmaps,hyperloglogs, geospatial indexes, and streams. Redis has built-in replication,Lua scripting, LRU eviction, transactions, and different levels of on-diskpersistence, and provides high availability via Redis Sentinel and automaticpartitioning with Redis Cluster.", "homepage": "https://redis.io"}, "ReFrame": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ReFrame/4.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pip-21.3.1, reframe-4.2.0, wheel-0.37.1"}, "ReFrame/3.5.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "pip-21.0.1, reframe-3.5.2, setuptools-53.0.0"}, "ReFrame/3.9.1": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "pip-21.2.4, reframe-3.9.1, setuptools-57.4.0, wheel-0.37.0"}, "ReFrame/3.11.1": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "pip-21.3.1, reframe-3.11.1, setuptools-58.5.3, wheel-0.37.1"}, "ReFrame/3.11.2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pip-21.3.1, reframe-3.11.2, setuptools-59.6.0, wheel-0.37.1"}}, "description": "ReFrame is a framework for writing regression tests for HPC systems.", "homepage": "https://github.com/reframe-hpc/reframe"}, "regionmask": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"regionmask/0.10.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "regionmask-0.10.0"}}, "description": "regionmask creates masks of geographical regions. It determines to whichgeographic region each grid point belongs.", "homepage": "https://regionmask.readthedocs.io"}, "RegTools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RegTools/0.5.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RegTools/1.0.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RegTools/0.4.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "RegTools/0.5.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "RegTools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in aregulatory and splicing context.", "homepage": "https://regtools.readthedocs.org"}, "RepeatMasker": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RepeatMasker/4.1.2-p1-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.", "homepage": "https://www.repeatmasker.org/"}, "ResistanceGA": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"ResistanceGA/4.2-5-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "GA-3.2.2, JuliaCall-0.17.5, MuMIn-1.47.1, ResistanceGA-4.2-5, spdep-1.2-7, XR-0.7.2, XRJulia-0.9.0"}}, "description": "An R package to optimize resistance surfaces using Genetic Algorithms.", "homepage": "https://github.com/wpeterman/ResistanceGA"}, "rethinking": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"rethinking/2.40-20230914-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "R package that contains tools for conducting both quick quadratic approximation of the posterior distribution as well as Hamiltonian Monte Carlo.", "homepage": "https://github.com/rmcelreath/rethinking"}, "RevBayes": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RevBayes/1.1.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "RevBayes/1.2.1-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "RevBayes provides an interactive environment for statistical computation in phylogenetics. It is primarily intended for modeling, simulation, and Bayesian inference in evolutionary biology, particularly phylogenetics.", "homepage": "https://revbayes.github.io"}, "Rgurobi": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Rgurobi/9.5.0-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Gurobi Optimizer 9.5 interface", "homepage": "https://www.gurobi.com"}, "RheoTool": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"RheoTool/5.0-foss-2019b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "RheoTool is an open-source toolbox based on OpenFOAM to simulate Generalized Newtonian Fluids (GNF)and viscoelastic fluids under pressure-driven and/or electrically-driven flows.", "homepage": "https://github.com/fppimenta/rheoTool"}, "rioxarray": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"rioxarray/0.11.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "geospatial xarray extension powered by rasterio", "homepage": "https://github.com/corteva/rioxarray"}, "rjags": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"rjags/4-10-foss-2020b-R-4.0.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "rjags/4-13-foss-2021b-R-4.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "rjags/4-13-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The rjags package is an interface to the JAGS library.", "homepage": "https://cran.r-project.org/web/packages/rjags"}, "RLCard": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"RLCard/1.0.9-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "rlcard-1.0.9, termcolor-1.1.0"}}, "description": "RLCard is a toolkit for Reinforcement Learning (RL) in card games.", "homepage": "https://www.rlcard.org"}, "Rmath": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Rmath/4.3.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Rmath/4.0.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Rmath is the standalone version of the R math library. Rmath can be used in your own C/C++ routines.", "homepage": "https://www.r-project.org/"}, "RMBlast": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RMBlast/2.11.0-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program 'rmblastn' for use with RepeatMasker and RepeatModeler.", "homepage": "https://www.repeatmasker.org/RMBlast.html"}, "RNA-Bloom": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RNA-Bloom/2.0.1-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "RNA-Bloom/1.2.3-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler.", "homepage": "https://github.com/bcgsc/RNA-Bloom"}, "ROOT": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ROOT/6.24.06-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ROOT/6.26.06-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ROOT/6.20.04-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way.", "homepage": "https://root.cern.ch/drupal/"}, "rpy2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"rpy2/3.4.5-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "backports-zoneinfo-0.2.1, cffi-1.15.1, pytz-deprecation-shim-0.1.0.post0, rpy2-3.4.5, simplegeneric-0.8.1, tzdata-2023.3, tzlocal-2.1"}, "rpy2/3.4.5-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "backports-zoneinfo-0.2.1, cffi-1.15.0, pytz-deprecation-shim-0.1.0.post0, rpy2-3.4.5, simplegeneric-0.8.1, tzdata-2021.5, tzlocal-2.1"}, "rpy2/3.5.10-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pytz-deprecation-shim-0.1.0.post0, rpy2-3.5.10, tzdata-2023.3, tzlocal-2.1"}, "rpy2/3.2.6-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cffi-1.14.0, rpy2-3.2.6, simplegeneric-0.8.1, tzlocal-2.0.0"}}, "description": "rpy2 is an interface to R running embedded in a Python process.", "homepage": "https://rpy2.bitbucket.io/"}, "RSEM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RSEM/1.3.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "RNA-Seq by Expectation-Maximization", "homepage": "https://deweylab.github.io/RSEM/"}, "RSeQC": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"RSeQC/4.0.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "RSeQC/4.0.0-foss-2020a-Python-3.8.2": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "RSeQC provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc.", "homepage": "http://rseqc.sourceforge.net/"}, "RStudio-Server": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RStudio-Server/2022.02.0-443-rhel-x86_64": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik"]}, "RStudio-Server/1.3.959-foss-2020a-Java-11-R-4.0.0": {"clusters": ["skitty"]}}, "description": "This is the RStudio Server version.RStudio is a set of integrated tools designed to help you be more productive with R.The server can be started with: rserver --server-daemonize=0 --www-port 8787 --rsession-which-r=$(which R)", "homepage": "https://www.rstudio.com/"}, "RTG-Tools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RTG-Tools/3.12.1-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "RTG Tools contains utilities to easily manipulate and accurately compare multiple VCF files, as well as utilities for processing other common NGS data formats.", "homepage": "https://www.realtimegenomics.com/products/rtg-tools"}, "ruamel.yaml": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ruamel.yaml/0.17.21-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "configobj-5.0.6, ruamel.yaml-0.17.21, ruamel.yaml.base-0.3.0, ruamel.yaml.clib-0.2.6, ruamel.yaml.cmd-0.5.10, ruamel.yaml.convert-0.3.2"}, "ruamel.yaml/0.17.21-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "configobj-5.0.6, lz4-4.0.2, ruamel.yaml-0.17.21, ruamel.yaml.base-0.3.0, ruamel.yaml.clib-0.2.6, ruamel.yaml.cmd-0.6.3, ruamel.yaml.convert-0.3.2"}, "ruamel.yaml/0.17.32-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "configobj-5.0.8, lz4-4.3.2, ruamel.yaml-0.17.32, ruamel.yaml.base-0.3.2, ruamel.yaml.clib-0.2.7, ruamel.yaml.cmd-0.6.5, ruamel.yaml.convert-0.3.2"}}, "description": "ruamel.yaml is a YAML 1.2 loader/dumper package for Python.", "homepage": "https://sourceforge.net/projects/ruamel-yaml"}, "Ruby": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Ruby/3.0.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "activesupport-5.0.7.2, addressable-2.7.0, arr-pm-0.0.11, backports-3.21.0, bundler-2.2.21, cabin-0.9.0, childprocess-4.1.0, clamp-1.3.2, concurrent-ruby-1.1.9, connection_pool-2.2.5, diff-lcs-1.4.4, ethon-0.14.0, faraday-1.3.0, faraday-net_http-1.0.1, faraday_middleware-1.0.0, ffi-1.15.3, gh-0.18.0, highline-2.0.3, i18n-1.8.10, json-2.5.1, launchy-2.5.0, minitest-5.14.4, multi_json-1.15.0, multipart-post-2.1.1, mustermann-1.1.1, net-http-persistent-2.9.4, net-http-pipeline-1.0.1, public_suffix-4.0.6, pusher-client-0.6.2, rack-2.2.3, rack-protection-2.1.0, rack-test-1.1.0, rspec-3.10.0, rspec-core-3.10.1, rspec-expectations-3.10.1, rspec-mocks-3.10.2, rspec-support-3.10.2, ruby2_keywords-0.0.4, sinatra-2.1.0, thread_safe-0.3.6, tilt-2.0.10, typhoeus-1.4.0, tzinfo-1.1.0, websocket-1.2.9, zeitwerk-2.4.2"}, "Ruby/3.0.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "activesupport-5.2.6, addressable-2.8.0, arr-pm-0.0.11, backports-3.23.0, bundler-2.3.5, cabin-0.9.0, childprocess-4.1.0, clamp-1.3.2, concurrent-ruby-1.1.9, connection_pool-2.2.5, diff-lcs-1.5.0, ethon-0.15.0, faraday-1.0.0, faraday-net_http-2.0.1, faraday_middleware-1.2.0, ffi-1.15.5, gh-0.18.0, highline-2.0.3, i18n-1.8.11, json-2.6.1, launchy-2.5.0, minitest-5.15.0, multi_json-1.15.0, multipart-post-2.1.1, mustermann-1.1.1, net-http-persistent-2.9.4, net-http-pipeline-1.0.1, public_suffix-4.0.6, pusher-client-0.6.2, rack-2.2.3, rack-protection-2.1.0, rack-test-1.1.0, rspec-3.10.0, rspec-core-3.10.1, rspec-expectations-3.10.1, rspec-mocks-3.10.2, rspec-support-3.10.3, ruby2_keywords-0.0.5, sinatra-2.1.0, thread_safe-0.3.6, tilt-2.0.10, typhoeus-1.4.0, tzinfo-1.1.0, websocket-1.2.9, zeitwerk-2.5.3"}}, "description": "Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.", "homepage": "https://www.ruby-lang.org"}, "ruffus": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ruffus/2.8.4-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Ruffus is a Computation Pipeline library for python. It is open-sourced, powerful and user-friendly, and widely used in science and bioinformatics.", "homepage": "http://www.ruffus.org.uk/"}, "Rust": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Rust/1.52.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Rust/1.54.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Rust/1.56.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Rust/1.60.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Rust/1.60.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Rust/1.65.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Rust/1.65.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Rust/1.70.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Rust/1.73.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Rust/1.75.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Rust/1.75.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Rust/1.42.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Rust/1.52.1-GCCcore-10.2.0": {"clusters": ["donphan", "joltik"]}}, "description": "Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.", "homepage": "https://www.rust-lang.org"}, "s3fs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"s3fs/2023.12.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "aiobotocore-2.9.0, aioitertools-0.11.0, botocore-1.33.13, fsspec-2023.12.2, jmespath-1.0.1, s3fs-2023.12.2"}}, "description": "S3FS builds on aiobotocore to provide a convenient Python filesystem interface for S3..", "homepage": "https://github.com/fsspec/s3fs/"}, "Sabre": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Sabre/2013-09-28-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Sabre is a tool that will demultiplex barcoded reads into separate files. It will work on both single-end and paired-end data in fastq format. It simply compares the provided barcodes with each read and separates the read into its appropriate barcode file, after stripping the barcode from the read (and also stripping the quality values of the barcode bases).", "homepage": "https://github.com/najoshi/sabre"}, "Salmon": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Salmon/1.9.0-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Salmon/1.1.0-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Salmon/1.4.0-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.", "homepage": "https://github.com/COMBINE-lab/salmon"}, "Sambamba": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Sambamba/1.0.1-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Sambamba/0.8.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files. Current functionality is an important subset of samtools functionality, including view, index, sort, markdup, and depth.", "homepage": "https://lomereiter.github.io/sambamba/"}, "samclip": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"samclip/0.4.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "samclip/0.4.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Filter SAM file for soft and hard clipped alignments.", "homepage": "https://github.com/tseemann/samclip"}, "SAMtools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SAMtools/0.1.20-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SAMtools/1.11-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SAMtools/1.13-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SAMtools/1.13-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SAMtools/1.14-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SAMtools/1.15-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SAMtools/1.16.1-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SAMtools/1.17-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SAMtools/1.18-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SAMtools/0.1.20-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SAMtools/0.1.20-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SAMtools/1.10-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SAMtools/1.10-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SAMtools/1.10-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.", "homepage": "https://www.htslib.org/"}, "Satsuma2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Satsuma2/20220304-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Satsuma2 is an optimised version of Satsuma, a tool to reliably align large and complex DNA sequencesproviding maximum sensitivity (to find all there is to find), specificity (to only find real homology) and speed (toaccommodate the billions of base pairs in vertebrate genomes).", "homepage": "https://github.com/bioinfologics/satsuma2"}, "SBCL": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SBCL/2.2.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Steel Bank Common Lisp (SBCL) is a high performance Common Lisp compiler. It isopen source / free software, with a permissive license. In addition to thecompiler and runtime system for ANSI Common Lisp, it provides an interactiveenvironment including a debugger, a statistical profiler, a code coverage tool,and many other extensions.", "homepage": "http://sbcl.sourceforge.net/"}, "ScaFaCoS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"ScaFaCoS/1.0.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ScaFaCoS/1.0.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ScaFaCoS/1.0.1-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ScaFaCoS is a library of scalable fast coulomb solvers.", "homepage": "http://www.scafacos.de/"}, "ScaLAPACK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ScaLAPACK/2.0.2-gompi-2019b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "ScaLAPACK/2.1.0-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ScaLAPACK/2.1.0-gompi-2021a-fb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ScaLAPACK/2.1.0-gompi-2021b-fb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ScaLAPACK/2.1.0-gompic-2020b": {"clusters": ["accelgor", "joltik"]}, "ScaLAPACK/2.2.0-gompi-2022a-fb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ScaLAPACK/2.2.0-gompi-2022b-fb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ScaLAPACK/2.2.0-gompi-2023a-fb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ScaLAPACK/2.2.0-gompi-2023b-fb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ScaLAPACK/2.1.0-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ScaLAPACK/2.1.0-gompi-2020b-bf": {"clusters": ["doduo"]}, "ScaLAPACK/2.1.0-iimpi-2020b-bf": {"clusters": ["doduo"]}}, "description": "The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.", "homepage": "https://www.netlib.org/scalapack/"}, "scanpy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scanpy/1.8.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.7.6, natsort-7.1.1, pynndescent-0.5.4, scanpy-1.8.1, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.1, xlrd-1.2.0"}, "scanpy/1.8.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.7.8, natsort-8.0.2, pynndescent-0.5.5, scanpy-1.8.2, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.2, xlrd-1.2.0"}, "scanpy/1.9.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.8.0, natsort-8.2.0, pynndescent-0.5.8, scanpy-1.9.1, session_info-1.0.0, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.3, xlrd-2.0.1"}, "scanpy/1.9.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.8.0, natsort-8.2.0, scanpy-1.9.1, session_info-1.0.0, sinfo-0.3.4, stdlib-list-0.8.0, xlrd-2.0.1"}, "scanpy/1.9.8-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "joblib-1.3.2, legacy_api_wrap-1.4, natsort-8.4.0, packaging-23.2, scanpy-1.9.8, session-info-1.0.0, stdlib_list-0.10.0"}, "scanpy/1.8.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.7.6, natsort-7.1.1, pynndescent-0.5.4, scanpy-1.8.1, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.1"}}, "description": "Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.", "homepage": "https://scanpy.readthedocs.io/en/stable/"}, "scArches": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scArches/0.5.6-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "gdown-4.6.0, muon-0.1.2, newick-1.4.0, scArches-0.5.6, scHPL-1.0.2, sklearn-0.0"}, "scArches/0.5.6-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "gdown-4.6.0, muon-0.1.2, newick-1.4.0, scArches-0.5.6, scHPL-1.0.2, sklearn-0.0"}}, "description": "Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data.", "homepage": "https://github.com/theislab/scarches"}, "scCODA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scCODA/0.1.9-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scCODA-0.1.9"}}, "description": "scCODA allows for identification of compositional changes in high-throughput sequencing count data,especially cell compositions from scRNA-seq.", "homepage": "https://github.com/theislab/scCODA"}, "sceasy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"sceasy/0.0.7-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "sceasy is a package that helps easy conversion of different single-cell data formats to each other", "homepage": "https://github.com/cellgeni/sceasy"}, "SCGid": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SCGid/0.9b0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "ClaMS-CLI-31012020, ESOM-1.1"}}, "description": "A consensus approach to contig filtering and genome prediction from single-cell sequencing libraries", "homepage": "https://github.com/amsesk/SCGid"}, "scHiCExplorer": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scHiCExplorer/7-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scHiCExplorer-7"}}, "description": "The scHiCExplorer is a software to demultiplex, process, correct, normalize, manipulate, analyse andvisualize single-cell Hi-C data.", "homepage": "https://schicexplorer.readthedocs.io"}, "scib-metrics": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scib-metrics/0.3.3-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "chex-0.1.6, markdown-it-py-2.2.0, mdurl-0.1.2, plottable-0.1.5, pynndescent-0.5.10, rich-13.2.0, scib-metrics-0.3.3, setuptools-68.1.2, toolz-0.12.0, typing-extensions-4.7.1"}}, "description": "Accelerated and Python-only metrics for benchmarking single-cell integration outputs", "homepage": "https://scib-metrics.readthedocs.io"}, "scib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scib/1.1.3-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Benchmarking atlas-level data integration in single-cell genomics.", "homepage": "https://github.com/theislab/scib"}, "scikit-bio": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scikit-bio/0.5.7-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CacheControl-0.12.14, hdmedians-0.14.2, lockfile-0.12.2, msgpack-1.0.5, natsort-8.4.0, scikit-bio-0.5.7"}, "scikit-bio/0.5.7-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "CacheControl-0.12.11, hdmedians-0.14.2, lockfile-0.12.2, msgpack-1.0.4, natsort-8.1.0, scikit-bio-0.5.7"}}, "description": "scikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithmsand educational resources for bioinformatics.", "homepage": "http://scikit-bio.org"}, "scikit-build": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scikit-build/0.11.1-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "distro-1.5.0, scikit-build-0.11.1"}, "scikit-build/0.11.1-GCCcore-10.3.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "distro-1.5.0, scikit-build-0.11.1"}, "scikit-build/0.15.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "distro-1.7.0, scikit-build-0.15.0"}, "scikit-build/0.17.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "distro-1.8.0, scikit_build-0.17.2"}, "scikit-build/0.17.6-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "distro-1.8.0, packaging-23.1, scikit_build-0.17.6"}, "scikit-build/0.17.6-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "distro-1.8.0, packaging-23.1, scikit_build-0.17.6"}, "scikit-build/0.11.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "distro-1.5.0, scikit-build-0.11.1"}}, "description": "Scikit-Build, or skbuild, is an improved build system generatorfor CPython C/C++/Fortran/Cython extensions.", "homepage": "https://scikit-build.readthedocs.io/en/latest"}, "scikit-extremes": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scikit-extremes/2022.4.10-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "numdifftools-0.9.41, scikit-extremes-2022.4.10"}}, "description": "scikit-extremes is a basic statistical package to perform univariate extreme value calculations using Python", "homepage": "https://github.com/kikocorreoso/scikit-extremes"}, "scikit-image": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scikit-image/0.18.1-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "imageio-2.9.0, imread-0.7.4, pooch-1.3.0, PyWavelets-1.1.1, scikit-image-0.18.1, tifffile-2021.2.1"}, "scikit-image/0.18.3-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "imageio-2.9.0, imread-0.7.4, pooch-1.5.2, PyWavelets-1.1.1, scikit-image-0.18.3, tifffile-2021.10.12"}, "scikit-image/0.19.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "imread-0.7.4, pooch-1.5.2, PyWavelets-1.2.0, scikit-image-0.19.1, tifffile-2021.11.2"}, "scikit-image/0.19.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "imread-0.7.4, pooch-1.6.0, PyWavelets-1.4.1, scikit-image-0.19.3, tifffile-2022.10.10"}, "scikit-image/0.16.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "imageio-2.6.1, imread-0.7.1, networkx-2.4, PyWavelets-1.1.1, scikit-image-0.16.2"}, "scikit-image/0.16.2-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "imageio-2.6.1, imread-0.7.1, networkx-2.4, PyWavelets-1.1.1, scikit-image-0.16.2"}, "scikit-image/0.17.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "imageio-2.9.0, imread-0.7.4, networkx-2.4, pooch-1.1.1, PyWavelets-1.1.1, scikit-image-0.17.1, tifffile-2020.7.17"}, "scikit-image/0.18.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "imageio-2.9.0, imread-0.7.4, pooch-1.3.0, PyWavelets-1.1.1, scikit-image-0.18.1, tifffile-2021.2.1"}}, "description": "scikit-image is a collection of algorithms for image processing.", "homepage": "https://scikit-image.org/"}, "scikit-learn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scikit-learn/0.20.4-foss-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scikit-learn-0.20.4, sklearn-0.0"}, "scikit-learn/0.21.3-foss-2019b-Python-3.7.4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "scikit-learn/0.23.1-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "flit-2.3.0, flit-core-2.3.0, pytoml-0.1.21, scikit-learn-0.23.1, threadpoolctl-2.1.0"}, "scikit-learn/0.23.2-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "scikit-learn/0.24.2-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "scikit-learn/1.0.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scikit-learn-1.0.1, sklearn-0.0"}, "scikit-learn/1.0.1-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "scikit-learn-1.0.1, sklearn-0.0"}, "scikit-learn/1.1.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scikit-learn-1.1.2, sklearn-0.0"}, "scikit-learn/1.1.2-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scikit-learn-1.1.2, sklearn-0.0"}, "scikit-learn/1.2.1-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scikit-learn-1.2.1, sklearn-0.0"}, "scikit-learn/1.3.1-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scikit-learn-1.3.1, sklearn-0.0"}, "scikit-learn/1.3.2-gfbf-2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scikit-learn-1.3.2, sklearn-0.0"}, "scikit-learn/1.4.0-gfbf-2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scikit-learn-1.4.0, sklearn-0.0"}, "scikit-learn/0.20.4-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "scikit-learn/0.20.4-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "scikit-learn/0.21.3-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "scikit-learn/0.23.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "flit-2.3.0, flit-core-2.3.0, pytoml-0.1.21, scikit-learn-0.23.1, threadpoolctl-2.1.0"}, "scikit-learn/0.23.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "scikit-learn/0.23.2-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world,building upon numpy, scipy, and matplotlib. As a machine-learning module,it provides versatile tools for data mining and analysis in any field of science and engineering.It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.", "homepage": "https://scikit-learn.org/stable/index.html"}, "scikit-misc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scikit-misc/0.1.4-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Miscellaneous tools for data analysis and scientific computing", "homepage": "https://github.com/has2k1/scikit-misc"}, "scikit-optimize": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"scikit-optimize/0.9.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) expensive and noisy black-box functions.", "homepage": "https://scikit-optimize.github.io"}, "SciPy-bundle": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SciPy-bundle/2019.10-foss-2019b-Python-3.7.4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "mpi4py-3.0.2, mpmath-1.1.0, numpy-1.17.3, pandas-0.25.3, scipy-1.3.1"}, "SciPy-bundle/2020.03-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.18.3, pandas-1.0.3, scipy-1.4.1"}, "SciPy-bundle/2020.11-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4"}, "SciPy-bundle/2020.11-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4"}, "SciPy-bundle/2021.05-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.2.1, numexpr-2.7.3, numpy-1.20.3, pandas-1.2.4, scipy-1.6.3"}, "SciPy-bundle/2021.05-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.2.1, numexpr-2.7.3, numpy-1.20.3, pandas-1.2.4, scipy-1.6.3"}, "SciPy-bundle/2021.10-foss-2021b-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "beniget-0.4.1, Bottleneck-1.3.2, deap-1.3.1, gast-0.5.2, mpi4py-3.1.1, mpmath-1.2.1, numexpr-2.7.3, numpy-1.16.6, pandas-0.24.2, ply-3.11, scipy-1.2.3"}, "SciPy-bundle/2021.10-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "beniget-0.4.1, Bottleneck-1.3.2, deap-1.3.1, gast-0.5.2, mpi4py-3.1.1, mpmath-1.2.1, numexpr-2.7.3, numpy-1.21.3, pandas-1.3.4, ply-3.11, pythran-0.10.0, scipy-1.7.1"}, "SciPy-bundle/2021.10-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "beniget-0.4.1, Bottleneck-1.3.2, deap-1.3.1, gast-0.5.2, mpi4py-3.1.1, mpmath-1.2.1, numexpr-2.7.3, numpy-1.21.3, pandas-1.3.4, ply-3.11, pythran-0.10.0, scipy-1.7.1"}, "SciPy-bundle/2022.05-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "beniget-0.4.1, Bottleneck-1.3.4, deap-1.3.1, gast-0.5.3, mpi4py-3.1.3, mpmath-1.2.1, numexpr-2.8.1, numpy-1.22.3, pandas-1.4.2, ply-3.11, pythran-0.11.0, scipy-1.8.1"}, "SciPy-bundle/2022.05-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "beniget-0.4.1, Bottleneck-1.3.4, deap-1.3.3, gast-0.5.3, mpi4py-3.1.3, mpmath-1.2.1, numexpr-2.8.1, numpy-1.22.3, pandas-1.4.2, ply-3.11, pythran-0.11.0, scipy-1.8.1"}, "SciPy-bundle/2023.02-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "beniget-0.4.1, Bottleneck-1.3.5, deap-1.3.3, gast-0.5.3, mpmath-1.2.1, numexpr-2.8.4, numpy-1.24.2, pandas-1.5.3, ply-3.11, pythran-0.12.1, scipy-1.10.1"}, "SciPy-bundle/2023.07-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "beniget-0.4.1, Bottleneck-1.3.7, deap-1.4.0, gast-0.5.4, mpmath-1.3.0, numexpr-2.8.4, numpy-1.25.1, pandas-2.0.3, ply-3.11, pythran-0.13.1, scipy-1.11.1, tzdata-2023.3, versioneer-0.29"}, "SciPy-bundle/2023.11-gfbf-2023b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "beniget-0.4.1, Bottleneck-1.3.7, deap-1.4.1, gast-0.5.4, mpmath-1.3.0, numexpr-2.8.7, numpy-1.26.2, pandas-2.1.3, ply-3.11, pythran-0.14.0, scipy-1.11.4, tzdata-2023.3, versioneer-0.29"}, "SciPy-bundle/2019.10-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "mpi4py-3.0.2, mpmath-1.1.0, numpy-1.16.5, pandas-0.24.2, scipy-1.2.2"}, "SciPy-bundle/2019.10-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "mpi4py-3.0.2, mpmath-1.1.0, numpy-1.16.5, pandas-0.24.2, scipy-1.2.2"}, "SciPy-bundle/2019.10-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "mpi4py-3.0.2, mpmath-1.1.0, numpy-1.17.3, pandas-0.25.3, scipy-1.3.1"}, "SciPy-bundle/2020.03-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.18.3, pandas-1.0.3, scipy-1.4.1"}, "SciPy-bundle/2020.03-intel-2020a-Python-2.7.18": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.16.6, pandas-0.24.2, scipy-1.2.3"}, "SciPy-bundle/2020.03-iomkl-2020a-Python-3.8.2": {"clusters": ["doduo"], "extensions": "deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.18.3, pandas-1.0.3, scipy-1.4.1"}, "SciPy-bundle/2020.11-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.3, numpy-1.16.6, pandas-0.24.2, scipy-1.2.3"}, "SciPy-bundle/2020.11-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4"}, "SciPy-bundle/2021.05-intel-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.2.1, numexpr-2.7.3, numpy-1.20.3, pandas-1.2.4, scipy-1.6.3"}, "SciPy-bundle/2020.03-foss-2020a-Python-2.7.18": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.16.6, pandas-0.24.2, scipy-1.2.3"}, "SciPy-bundle/2020.11-intelcuda-2020b": {"clusters": ["joltik"], "extensions": "Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4"}}, "description": "Bundle of Python packages for scientific software", "homepage": "https://python.org/"}, "SCons": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SCons/4.2.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SCons/4.5.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "SCons-4.5.2"}, "SCons/3.1.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SCons/3.1.2-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SCons/4.1.0.post1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SCons/4.1.0.post1-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SCons/4.4.0-GCCcore-11.3.0": {"clusters": ["donphan", "joltik"], "extensions": "SCons-4.4.0"}}, "description": "SCons is a software construction tool.", "homepage": "https://www.scons.org/"}, "SCopeLoomR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SCopeLoomR/0.13.0-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "rlist-0.4.6.2, SCopeLoomR-0.13.0"}}, "description": "An R package (compatible with SCope) to create generic .loom files and extend them with other datae.g.: SCENIC regulons, Seurat clusters and markers, ...", "homepage": "https://github.com/aertslab/SCopeLoomR"}, "SCOTCH": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SCOTCH/6.0.9-gompi-2019b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SCOTCH/6.1.0-gompi-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SCOTCH/6.1.0-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SCOTCH/6.1.2-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SCOTCH/6.1.2-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SCOTCH/7.0.1-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SCOTCH/7.0.3-gompi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SCOTCH/7.0.3-gompi-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SCOTCH/6.0.9-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SCOTCH/6.0.9-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SCOTCH/6.0.9-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SCOTCH/6.1.0-iimpi-2020b": {"clusters": ["doduo"]}, "SCOTCH/6.1.0-iimpi-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Software package and libraries for sequential and parallel graph partitioning,static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.", "homepage": "https://gforge.inria.fr/projects/scotch/"}, "scPred": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"scPred/1.9.2-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "scPred package for cell type prediction from scRNA-seq data", "homepage": "https://github.com/powellgenomicslab/scPred"}, "scrublet": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scrublet/0.2.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "annoy-1.17.1, pynndescent-0.5.7, scrublet-0.2.3, umap-learn-0.5.3"}}, "description": "Single-Cell Remover of Doublets - Python code for identifying doublets in single-cell RNA-seq data", "homepage": "https://github.com/swolock/scrublet"}, "scVelo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scVelo/0.2.5-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "scVelo-0.2.5"}, "scVelo/0.1.24-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "anndata-0.7.1, get_version-2.1, legacy-api-wrap-1.2, loompy-3.0.6, natsort-7.0.0, numpy-groupies-0.9.10, scanpy-1.4.5.post2, scVelo-0.1.24, seaborn-0.9.0, umap-learn-0.3.10"}, "scVelo/0.2.3-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "anndata-0.7.6, get_version-3.2, legacy-api-wrap-1.2, loompy-3.0.6, natsort-7.1.1, numpy-groupies-0.9.13, scanpy-1.8.1, scVelo-0.2.3, seaborn-0.11.1, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.4.6, xlrd-1.2.0"}}, "description": "scVelo is a scalable toolkit for estimating and analyzing RNA velocities in single cells using dynamical modeling.", "homepage": "https://scvelo.org"}, "scvi-tools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"scvi-tools/0.16.4-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "anndata-0.8.0, chex-0.1.5, commonmark-0.9.1, contextlib2-21.6.0, docrep-0.3.2, flax-0.5.2, ml_collections-0.1.1, mudata-0.2.0, multipledispatch-0.6.0, natsort-8.1.0, numpyro-0.10.1, optax-0.1.3, pyro-api-0.1.2, pyro-ppl-1.8.0, rich-11.1.0, scvi-tools-0.16.4, toolz-0.12.0, typing_extensions-4.4.0"}, "scvi-tools/0.16.4-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.8.0, chex-0.1.5, commonmark-0.9.1, contextlib2-21.6.0, docrep-0.3.2, flax-0.5.2, ml_collections-0.1.1, mudata-0.2.0, multipledispatch-0.6.0, natsort-8.1.0, numpyro-0.10.1, optax-0.1.3, pyro-api-0.1.2, pyro-ppl-1.8.0, rich-11.1.0, scvi-tools-0.16.4, toolz-0.12.0, typing_extensions-4.4.0"}}, "description": "scvi-tools (single-cell variational inference tools) is a package for probabilistic modeling andanalysis of single-cell omics data, built on top of PyTorch and AnnData.", "homepage": "https://github.com/scverse/scvi-tools"}, "SDL2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SDL2/2.0.20-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SDL2/2.26.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SDL2/2.28.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SDL2/2.0.14-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "SDL2/2.0.14-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SDL: Simple DirectMedia Layer, a cross-platform multimedia library", "homepage": "https://www.libsdl.org/"}, "Seaborn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Seaborn/0.11.1-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "Seaborn/0.11.2-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Seaborn/0.11.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Seaborn/0.12.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Seaborn/0.12.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Seaborn/0.13.2-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Seaborn/0.9.1-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Seaborn/0.10.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Seaborn/0.10.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Seaborn/0.10.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Seaborn/0.10.1-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Seaborn/0.10.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Seaborn/0.11.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Seaborn/0.11.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics.", "homepage": "https://seaborn.pydata.org/"}, "SEACells": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SEACells/20230731-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "fcsparser-0.2.3, ncls-0.0.67, palantir-1.2, PhenoGraph-1.5.7, progressbar2-4.2.0, pygam-0.8.0, pyranges-0.0.110, pyrle-0.0.33, python-utils-3.7.0, SEACells-20230731, sorted-nearest-0.0.32, typing-extensions-4.7.1, tzlocal-5.0.1"}}, "description": "SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data", "homepage": "https://github.com/dpeerlab/SEACells"}, "segemehl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"segemehl/0.3.4-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "segemehl/0.3.4-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is able to mapprimer- or polyadenylation contaminated reads correctly. segemehl implements a matching strategy based on enhanced suffix arrays (ESA). Segemehl now supports the SAM format, reads gziped queries to save both disk and memory space and allows bisulfite sequencing mapping and split read mapping.", "homepage": "https://www.bioinf.uni-leipzig.de/Software/segemehl/"}, "SELFIES": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SELFIES/2.1.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Robust representation of semantically constrained graphs, in particular for molecules in chemistry", "homepage": "https://github.com/aspuru-guzik-group/selfies"}, "SemiBin": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SemiBin/2.0.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "SemiBin-2.0.2"}, "SemiBin/2.0.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "SemiBin-2.0.2"}}, "description": "SemiBin: Metagenomic Binning Using Siamese Neural Networks for short and long reads", "homepage": "https://semibin.readthedocs.io"}, "semla": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"semla/1.1.6-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "R interface to the Apache Arrow C++ library", "homepage": "https://cran.r-project.org/web/packages/arrow"}, "Sentence-Transformers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Sentence-Transformers/2.2.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "sentence-transformers-2.2.2"}}, "description": "Sentence Transformers provides an easy method to compute dense vector representations for sentences, paragraphs, and images", "homepage": "https://github.com/UKPLab/sentence-transformers"}, "SentencePiece": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SentencePiece/0.1.96-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SentencePiece/0.1.97-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SentencePiece/0.1.99-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SentencePiece/0.1.85-GCC-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Unsupervised text tokenizer for Neural Network-based text generation.", "homepage": "https://github.com/google/sentencepiece"}, "SEPP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SEPP/4.5.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SEPP/4.5.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SEPP/4.3.10-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SEPP/4.4.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SATe-enabled Phylogenetic Placement - addresses the problem of phylogeneticplacement of short reads into reference alignments and trees.", "homepage": "https://github.com/smirarab/sepp"}, "SeqAn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SeqAn/2.4.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SeqAn/2.4.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SeqAn/2.4.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.", "homepage": "https://github.com/seqan/seqan"}, "seqtk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"seqtk/1.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "seqtk/1.4-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "seqtk/1.3-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "seqtk/1.3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.", "homepage": "https://github.com/lh3/seqtk/"}, "Serf": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Serf/1.3.9-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "The serf library is a high performance C-based HTTP client library built upon the Apache Portable Runtime (APR) library", "homepage": "https://serf.apache.org/"}, "setuptools-rust": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"setuptools-rust/1.6.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "semantic_version-2.10.0, setuptools-rust-1.6.0, typing_extensions-4.6.3"}, "setuptools-rust/1.8.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "semantic_version-2.10.0, setuptools-rust-1.8.0, typing_extensions-4.8.0"}}, "description": "setuptools-rust is a plugin for setuptools to build Rust Python extensionsimplemented with PyO3 or rust-cpython.", "homepage": "https://github.com/PyO3/setuptools-rust"}, "setuptools": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"setuptools/64.0.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Easily download, build, install, upgrade, and uninstall Python packages", "homepage": "https://pypi.org/project/setuptools"}, "Seurat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Seurat/4.2.0-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "Matrix-1.5-1, sctransform-0.3.5, Seurat-4.2.0, SeuratObject-4.1.2, uwot-0.1.14"}, "Seurat/4.3.0-foss-2021b-R-4.1.2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "Matrix-1.5-3, sctransform-0.3.5, Seurat-4.3.0, SeuratObject-4.1.3, sp-1.5-1, spatstat.data-3.0-0, spatstat.explore-3.0-5, spatstat.geom-3.0-3, spatstat.random-3.0-1, spatstat.sparse-3.0-0, spatstat.utils-3.0-1, uwot-0.1.14"}, "Seurat/4.3.0-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Matrix-1.5-4, sctransform-0.3.5, Seurat-4.3.0, SeuratObject-4.1.3, sp-1.5-1, spatstat.data-3.0-0, spatstat.explore-3.0-5, spatstat.geom-3.0-3, spatstat.random-3.0-1, spatstat.sparse-3.0-0, spatstat.utils-3.0-1, uwot-0.1.14"}, "Seurat/3.1.5-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Seurat/4.0.1-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Seurat-4.0.1, spatstat.core-2.0-0, spatstat.data-2.1-0, spatstat.geom-2.0-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0"}}, "description": "Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data.", "homepage": "https://satijalab.org/seurat"}, "SeuratDisk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SeuratDisk/0.0.0.9020-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Interfaces for HDF5-based Single Cell File Formats", "homepage": "https://github.com/mojaveazure/seurat-disk"}, "SHAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SHAP/0.41.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cloudpickle-2.2.1, SHAP-0.41.0, slicer-0.0.7"}, "SHAP/0.42.1-foss-2019b-Python-3.7.4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "cloudpickle-2.2.1, setuptools-67.8.0, SHAP-0.42.1, slicer-0.0.7"}}, "description": "SHAP (SHapley Additive exPlanations) is a game theoretic approach to explain the output of any machine learning model. It connects optimal credit allocation with local explanations using the classic Shapley values from game theory and their related extensions.", "homepage": "https://github.com/slundberg/shap"}, "Shapely": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Shapely/1.8a1-GCC-10.3.0": {"clusters": ["accelgor", "joltik"]}, "Shapely/1.8.1.post1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Shapely/1.8.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Shapely/1.8.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Shapely/2.0.1-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Shapely/2.0.1-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Shapely/1.7.0-iccifort-2019.5.281-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Shapely/1.7.1-GCC-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Shapely/1.8a1-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Shapely/1.8a1-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects.It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries.", "homepage": "https://github.com/Toblerity/Shapely"}, "Short-Pair": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Short-Pair/20170125-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Sensitive Short Read Homology Search for Paired-End Reads", "homepage": "https://sourceforge.net/projects/short-pair"}, "shovill": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"shovill/1.1.0-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Faster SPAdes assembly of Illumina reads", "homepage": "https://github.com/tseemann/shovill"}, "silhouetteRank": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"silhouetteRank/1.0.5.13-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "silhouetteRank is a tool for finding spatially variable genes based on computing silhouette coefficient from binarized spatial gene expression data", "homepage": "https://pypi.org/project/silhouetteRank"}, "SimPEG": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SimPEG/0.18.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "discretize-0.8.2, empymod-2.2.1, geoana-0.4.0, pymatsolver-0.2.0, SimPEG-0.18.1, utm-0.7.0"}, "SimPEG/0.18.1-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "discretize-0.8.2, empymod-2.2.1, geoana-0.4.0, pydiso-0.0.3, pymatsolver-0.2.0, SimPEG-0.18.1, utm-0.7.0"}, "SimPEG/0.14.1-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "discretize-0.4.12, empymod-2.0.1, geoana-0.0.6, properties-0.6.1, pymatsolver-0.1.2, pyMKL-0.0.3, SimPEG-0.14.1, utm-0.5.0, vectormath-0.2.2"}}, "description": "Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.", "homepage": "https://simpeg.xyz/"}, "SimpleITK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SimpleITK/2.1.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "SimpleITK/2.1.1.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SimpleITK/1.2.4-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SimpleITK/2.1.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SimpleITK is a simplified programming interface to the algorithms and data structures of the Insight Toolkit (ITK).", "homepage": "http://www.simpleitk.org"}, "SISSO++": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SISSO++/1.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "C++ implementation of SISSO with built in Python bindings for an efficient python interface", "homepage": "https://gitlab.com/sissopp_developers/sissopp"}, "SISSO": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SISSO/3.0.2-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SISSO/3.1-20220324-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "A data-driven method combining symbolic regression and compressed sensing toward accurate & interpretable models.", "homepage": "https://github.com/rouyang2017/SISSO"}, "SKESA": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SKESA/2.4.0-gompi-2021b_saute.1.3.0_1": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "SKESA is a de-novo sequence read assembler for cultured single isolate genomes based on DeBruijn graphs.", "homepage": "https://github.com/ncbi/SKESA"}, "SlamDunk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SlamDunk/0.4.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducibleSLAMseq data analysis.", "homepage": "https://t-neumann.github.io/slamdunk"}, "SLEPc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SLEPc/3.17.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SLEPc/3.18.2-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SLEPc/3.12.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SLEPc/3.12.2-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SLEPc/3.15.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SLEPc/3.12.2-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik"]}}, "description": "SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.", "homepage": "https://slepc.upv.es/"}, "slepc4py": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"slepc4py/3.17.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "slepc4py/3.12.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "slepc4py/3.15.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Python bindings for SLEPc, the Scalable Library for Eigenvalue Problem Computations.", "homepage": "https://bitbucket.org/slepc/slepc4py"}, "slow5tools": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"slow5tools/0.4.0-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.", "homepage": "https://hasindu2008.github.io/slow5tools"}, "slurm-drmaa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"slurm-drmaa/1.1.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "DRMAA for Slurm Workload Manager (Slurm) is an implementation of Open Grid Forum Distributed Resource Management Application API (DRMAA) version 1 for submission and control of jobs to Slurm. Using DRMAA, grid applications builders, portal developers and ISVs can use the same high-level API to link their software with different cluster/resource management systems.", "homepage": "https://github.com/natefoo/slurm-drmaa"}, "SMAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SMAP/4.6.5-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "colorlog-6.7.0, cutadapt-4.1, dnaio-0.10.0, gffpandas-1.2.0, isal-1.1.0, ngs-smap-4.6.5, primer3-py-1.2.0, setuptools-67.6.1, smap-effect-prediction-0.1.2, smap-haplotype-window-1.8.1, xopen-1.7.0"}}, "description": "SMAP is an analysis tool for stack-based NGS read mapping", "homepage": "https://ngs-smap.readthedocs.io"}, "SMC++": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SMC++/1.15.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "SMC++-1.15.4"}}, "description": "SMC++ is a program for estimating the size history of populations from whole genome sequence data.", "homepage": "https://github.com/popgenmethods/smcpp"}, "smfishHmrf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"smfishHmrf/1.3.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "smFish spatial pattern mining and cell type prediction", "homepage": "https://pypi.org/project/smfishHmrf"}, "smithwaterman": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"smithwaterman/20160702-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "smithwaterman/20160702-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "smith-waterman-gotoh alignment algorithm.", "homepage": "https://github.com/ekg/smithwaterman"}, "smooth-topk": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "logger-1.4, smooth-topk-1.0-20210817"}, "smooth-topk/1.0-20210817-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "logger-1.4, smooth-topk-1.0-20210817"}}, "description": "Smooth Loss Functions for Deep Top-k Classification", "homepage": "https://github.com/oval-group/smooth-topk"}, "snakemake": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"snakemake/6.10.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "amply-0.1.4, ConfigArgParse-1.5.3, connection_pool-0.0.3, datrie-0.8.2, PuLP-2.5.1, ratelimiter-1.2.0.post0, smart_open-5.2.1, snakemake-6.10.0, stopit-1.1.2, toposort-1.7, wrapt-1.13.3"}, "snakemake/7.18.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "amply-0.1.5, ConfigArgParse-1.5.3, connection_pool-0.0.3, datrie-0.8.2, dpath-2.0.6, plac-1.3.5, PuLP-2.7.0, PyYAML-6.0, ratelimiter-1.2.0.post0, reretry-0.11.1, smart_open-6.2.0, snakemake-7.18.2, stopit-1.1.2, throttler-1.2.1, toposort-1.7, wrapt-1.14.1, yte-1.5.1"}, "snakemake/7.22.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "amply-0.1.5, ConfigArgParse-1.5.3, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.4, humanfriendly-10.0, plac-1.3.5, PuLP-2.7.0, reretry-0.11.8, smart-open-6.3.0, snakemake-7.22.0, stopit-1.1.2, throttler-1.2.2, toposort-1.9, wrapt-1.14.1, yte-1.5.1"}, "snakemake/7.32.3-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "amply-0.1.6, ConfigArgParse-1.7, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.6, fastjsonschema-2.18.0, humanfriendly-10.0, jupyter-core-5.3.1, nbformat-5.9.2, plac-1.3.5, reretry-0.11.8, smart-open-6.3.0, snakemake-7.32.3, stopit-1.1.2, throttler-1.2.2, toposort-1.10, yte-1.5.1"}, "snakemake/8.4.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argparse-dataclass-2.0.0, conda-inject-1.3.1, ConfigArgParse-1.7, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.6, fastjsonschema-2.19.1, humanfriendly-10.0, immutables-0.20, jupyter-core-5.7.1, nbformat-5.9.2, plac-1.4.2, reretry-0.11.8, smart-open-6.4.0, snakemake-8.4.2, snakemake-executor-plugin-cluster-generic-1.0.7, snakemake-executor-plugin-cluster-sync-0.1.3, snakemake-executor-plugin-flux-0.1.0, snakemake-executor-plugin-slurm-0.2.1, snakemake-executor-plugin-slurm-jobstep-0.1.10, snakemake-interface-common-1.15.2, snakemake-interface-executor-plugins-8.2.0, snakemake-interface-storage-plugins-3.0.0, stopit-1.1.2, throttler-1.2.2, toposort-1.10, yte-1.5.4"}, "snakemake/5.26.1-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "amply-0.1.4, ConfigArgParse-1.2.3, datrie-0.8.2, ipython_genutils-0.2.0, jsonschema-3.2.0, jupyter-core-4.6.3, nbformat-5.0.8, PuLP-2.3, pyrsistent-0.17.3, ratelimiter-1.2.0.post0, snakemake-5.26.1, toposort-1.5, traitlets-5.0.5, wrapt-1.12.1"}, "snakemake/6.1.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "amply-0.1.4, ConfigArgParse-1.4, datrie-0.8.2, PuLP-2.4, ratelimiter-1.2.0.post0, smart_open-4.1.2, snakemake-6.1.0, toposort-1.6, wrapt-1.12.1"}}, "description": "The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.", "homepage": "https://snakemake.readthedocs.io"}, "SNAP-ESA-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SNAP-ESA-python/9.0.0-GCCcore-11.2.0-Java-1.8-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"]}, "SNAP-ESA-python/9.0.0-GCCcore-11.2.0-Java-11-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik"]}}, "description": "Python interface to the Sentinel Application Platform (SNAP) API", "homepage": "https://step.esa.int/main/toolboxes/snap/"}, "SNAP-ESA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SNAP-ESA/9.0.0-Java-1.8": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "skitty"]}, "SNAP-ESA/9.0.0-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Sentinel Application Platform (SNAP) is a common architecture for allSentinel Toolboxes being jointly developed by Brockmann Consult, SkyWatch andC-S.The SNAP architecture is ideal for Earth Observation processing and analysisdue to the following technological innovations: Extensibility, Portability,Modular Rich Client Platform, Generic EO Data Abstraction, Tiled MemoryManagement, and a Graph Processing Framework.", "homepage": "https://step.esa.int/main/toolboxes/snap/"}, "SNAP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SNAP/2.0.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SNAP/2.0.1-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data", "homepage": "https://www.microsoft.com/en-us/research/project/snap"}, "snappy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"snappy/1.1.7-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "snappy/1.1.8-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.8-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.9-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.9-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.9-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.10-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "snappy/1.1.8-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Snappy is a compression/decompression library. It does not aimfor maximum compression, or compatibility with any other compression library;instead, it aims for very high speeds and reasonable compression.", "homepage": "https://github.com/google/snappy"}, "Sniffles": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Sniffles/2.0.7-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Sniffles-2.0.7"}}, "description": "A fast structural variant caller for long-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data.", "homepage": "https://github.com/fritzsedlazeck/Sniffles"}, "SOAPdenovo-Trans": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SOAPdenovo-Trans/1.0.5-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework,adapt to alternative splicing and different expression level among transcripts.", "homepage": "http://soap.genomics.org.cn/SOAPdenovo-Trans.html"}, "solo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"solo/1.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "commonmark-0.9.1, ConfigArgParse-1.5.3, docrep-0.3.2, opt-einsum-3.3.0, pyDeprecate-0.3.2, pyro-api-0.1.2, pyro-ppl-1.8.4, pytorch-lightning-1.3.8, PyYAML-5.4.1, rich-12.6.0, scvi-tools-0.14.6, solo-sc-1.3, torchmetrics-0.7.3"}}, "description": "Doublet detection via semi-supervised deep learning", "homepage": "https://github.com/calico/solo"}, "SoX": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SoX/14.4.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SoX/14.4.2-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files to other popular audio file types and also apply sound effects and filters during the conversion.", "homepage": "https://sourceforge.net/projects/sox"}, "spaCy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"spaCy/3.4.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "blis-0.7.9, catalogue-2.0.8, confection-0.0.3, cymem-2.0.7, langcodes-3.3.0, ml_datasets-0.2.0, murmurhash-1.0.9, pathy-0.10.1, preshed-3.0.8, pydantic-1.10.2, smart-open-6.3.0, spaCy-3.4.4, spacy-legacy-3.0.10, spacy-loggers-1.0.4, srsly-2.4.5, thinc-8.1.6, tqdm-4.64.1, typer-0.7.0, wasabi-0.10.1"}}, "description": "Industrial-strength Natural Language Processing (NLP) in Python.", "homepage": "https://spacy.io/"}, "SPAdes": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SPAdes/3.15.3-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SPAdes/3.15.4-GCC-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SPAdes/3.15.4-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SPAdes/3.15.5-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SPAdes/3.14.1-GCC-9.3.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SPAdes/3.15.2-GCC-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "SPAdes/3.15.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Genome assembler for single-cell and isolates data sets", "homepage": "https://cab.spbu.ru/software/spades/"}, "spaln": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"spaln/2.4.12-GCC-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spaln/2.4.12-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spaln/2.4.13f-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spaln/2.4.03-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job.", "homepage": "https://github.com/ogotoh/spaln"}, "Spark": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Spark/3.2.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "py4j-0.10.9.5"}, "Spark/3.5.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "py4j-0.10.9.7"}, "Spark/2.4.5-intel-2019b-Python-3.7.4-Java-1.8": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "py4j-0.10.7"}, "Spark/3.1.1-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "py4j-0.10.9.2"}}, "description": "Spark is Hadoop MapReduce done in memory", "homepage": "https://spark.apache.org"}, "sparse-neighbors-search": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"sparse-neighbors-search/0.7-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "sparse-neighbors-search-0.7"}}, "description": "A Python/C++ implementation of an approximate nearest neighbor search for sparse data structures based on the idea of local sensitiv hash functions.", "homepage": "https://github.com/joachimwolff/sparse-neighbors-search"}, "sparsehash": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"sparsehash/2.0.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "sparsehash/2.0.3-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.", "homepage": "https://github.com/sparsehash/sparsehash"}, "SpatialDE": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SpatialDE/1.1.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "NaiveDE-1.2.0, patsy-0.5.3, SpatialDE-1.1.3"}}, "description": "SpatialDE is a method to identify genes which significantly depend on spatial coordinates in non-linear and non-parametric ways. The intended applications are spatially resolved RNA-sequencing from e.g. Spatial Transcriptomics, or in situ gene expression measurements from e.g. SeqFISH or MERFISH.", "homepage": "https://pypi.org/project/SpatialDE"}, "spglib-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"spglib-python/1.16.0-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spglib-python/1.16.1-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spglib-python/1.16.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "spglib-python/1.16.3-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "spglib-python/2.0.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spglib-python/2.0.0-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spglib-python/1.16.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "spglib-python/1.16.0-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C.", "homepage": "https://pypi.python.org/pypi/spglib"}, "SPM": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SPM/12.5_r7771-MATLAB-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "SPM (Statistical Parametric Mapping) refers to the construction and assessment of spatially extended statistical processes used to test hypo- theses about functional imaging data. These ideas have been instantiated in software that is called SPM. The SPM software package has been designed for the analysis of brain imaging data sequences. The sequences can be a series of images from different cohorts, or time-series from the same subject. The current release is designed for the analysis of fMRI, PET, SPECT, EEG and MEG.", "homepage": "https://www.fil.ion.ucl.ac.uk/spm"}, "spoa": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"spoa/4.0.7-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "spoa/4.0.7-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "spoa/4.0.7-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "spoa/3.4.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "spoa/4.0.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "spoa/4.0.7-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm which is used to generate consensus sequences", "homepage": "https://github.com/rvaser/spoa"}, "SPOTPY": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SPOTPY/1.5.14-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "SPOTPY is a Python framework that enables the use of Computational optimization techniques forcalibration, uncertainty and sensitivity analysis techniques of almost every (environmental-) model.", "homepage": "https://spotpy.readthedocs.io"}, "SQLite": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SQLite/3.29.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.31.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.33.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.35.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.36-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.38.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.39.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.42.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.43.1-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SQLite/3.27.2-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "SQLite: SQL Database Engine in a C Library", "homepage": "https://www.sqlite.org/"}, "SqueezeMeta": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"SqueezeMeta/1.5.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis.", "homepage": "https://github.com/jtamames/SqueezeMeta"}, "Squidpy": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Squidpy/1.2.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "dask-image-2022.9.0, fsspec-2022.11.0, inflect-6.0.2, matplotlib-scalebar-0.8.1, omnipath-1.0.6, PIMS-0.6.1, pydantic-1.10.2, slicerator-1.1.0, squidpy-1.2.2, typing_extensions-4.4.0, validators-0.20.0, wrapt-1.14.1"}}, "description": "Squidpy is a tool for the analysis and visualization of spatial molecular data.", "homepage": "https://squidpy.readthedocs.io"}, "SRA-Toolkit": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SRA-Toolkit/3.0.0-centos_linux64": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SRA-Toolkit/3.0.0-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SRA-Toolkit/3.0.3-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SRA-Toolkit/2.9.6-1-centos_linux64": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SRA-Toolkit/2.10.4-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SRA-Toolkit/2.10.8-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SRA-Toolkit/2.10.9-gompi-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format", "homepage": "https://github.com/ncbi/sra-tools"}, "STAR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"STAR/2.7.9a-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "STAR/2.7.10b-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "STAR/2.7.11a-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "STAR/2.7.2b-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "STAR/2.7.3a-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}, "STAR/2.7.4a-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik"]}, "STAR/2.7.6a-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.", "homepage": "https://github.com/alexdobin/STAR"}, "stardist": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"stardist/0.8.3-foss-2021b-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"], "extensions": "configparser-5.3.0, csbdeep-0.7.2, edt-2.3.0, funcsigs-1.0.2, gputools-0.2.14, reikna-0.7.6, scikit-tensor-py3-20210331, stardist-0.8.3, tifffile-2022.10.10"}, "stardist/0.8.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "csbdeep-0.7.2, edt-2.3.0, stardist-0.8.3, tifffile-2022.10.10"}}, "description": "Object Detection with Star-convex Shapes.", "homepage": "https://github.com/stardist/stardist"}, "statsmodels": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"statsmodels/0.12.2-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "patsy-0.5.1, statsmodels-0.12.2"}, "statsmodels/0.13.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "patsy-0.5.2, statsmodels-0.13.1"}, "statsmodels/0.13.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "patsy-0.5.2, statsmodels-0.13.1"}, "statsmodels/0.13.1-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "patsy-0.5.2, statsmodels-0.13.1"}, "statsmodels/0.14.0-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "patsy-0.5.3, statsmodels-0.14.0"}, "statsmodels/0.14.1-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "patsy-0.5.6, statsmodels-0.14.1"}, "statsmodels/0.9.0-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "skitty"], "extensions": "patsy-0.5.1, statsmodels-0.9.0"}, "statsmodels/0.11.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "patsy-0.5.1, statsmodels-0.11.0"}, "statsmodels/0.11.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "patsy-0.5.1, statsmodels-0.11.0"}, "statsmodels/0.11.1-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "patsy-0.5.1, statsmodels-0.11.1"}, "statsmodels/0.12.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "patsy-0.5.1, statsmodels-0.12.1"}, "statsmodels/0.12.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "patsy-0.5.1, statsmodels-0.12.1"}, "statsmodels/0.12.1-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "patsy-0.5.1, statsmodels-0.12.1"}}, "description": "Statsmodels is a Python module that allows users to explore data, estimate statistical models,and perform statistical tests.", "homepage": "https://www.statsmodels.org/"}, "StringTie": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"StringTie/2.2.1-GCC-11.2.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "StringTie/2.2.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "StringTie/2.1.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts", "homepage": "https://ccb.jhu.edu/software/stringtie/"}, "STRique": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"STRique/0.4.2-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "ont-fast5-api-4.0.0, pomegranate-0.10.0, progressbar33-2.4, STRique-0.4.2"}}, "description": "STRique is a python package to analyze repeat expansion andmethylation states of short tandem repeats (STR) in Oxford Nanopore Technology(ONT) long read sequencing data.", "homepage": "https://github.com/giesselmann/STRique"}, "Structure_threader": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Structure_threader/1.3.10-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "colorlover-0.3.0, Structure_threader-1.3.10"}}, "description": "A program to parallelize the runs of Structure, fastStructure, MavericK and ALStructure software.", "homepage": "https://github.com/StuntsPT/Structure_threader"}, "SuAVE-biomat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SuAVE-biomat/2.0.0-20230815-intel-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Surface Assessment via Grid Evaluation (SuAVE) for Every Surface Curvature and Cavity Shape", "homepage": "https://github.com/SuAVE-Software/source_v2.0"}, "Subversion": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Subversion/1.14.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Subversion is an open source version control system.", "homepage": "https://subversion.apache.org/"}, "SuiteSparse": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SuiteSparse/5.6.0-foss-2019b-METIS-5.1.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SuiteSparse/5.8.1-foss-2020b-METIS-5.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SuiteSparse/5.10.1-foss-2021a-METIS-5.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SuiteSparse/5.10.1-foss-2021b-METIS-5.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SuiteSparse/5.10.1-intel-2021b-METIS-5.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SuiteSparse/5.13.0-foss-2022a-METIS-5.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SuiteSparse/7.1.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SuiteSparse/5.7.1-foss-2020a-METIS-5.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SuiteSparse/5.7.1-intel-2020a-METIS-5.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SuiteSparse is a collection of libraries manipulate sparse matrices.", "homepage": "https://faculty.cse.tamu.edu/davis/suitesparse.html"}, "SUNDIALS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SUNDIALS/6.2.0-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "SUNDIALS/6.6.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SUNDIALS/5.1.0-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SUNDIALS/5.1.0-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SUNDIALS/5.7.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "SUNDIALS/5.7.0-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "SUNDIALS/5.7.0-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers", "homepage": "https://computation.llnl.gov/projects/sundials"}, "SuperLU_DIST": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SuperLU_DIST/8.1.0-foss-2022a": {"clusters": ["accelgor", "gallade"]}, "SuperLU_DIST/5.4.0-intel-2020a-trisolve-merge": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.", "homepage": "https://crd-legacy.lbl.gov/~xiaoye/SuperLU/"}, "SUPPA": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SUPPA/2.3-20231005-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions.", "homepage": "https://github.com/comprna/SUPPA"}, "SVIM": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SVIM/2.0.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "SVIM-2.0.0"}}, "description": "SVIM (pronounced swim) is a structural variant caller for third-generation sequencing reads. It is able to detect and classify the following six classes of structural variation: deletions, insertions, inversions, tandem duplications, interspersed duplications and translocations.", "homepage": "https://github.com/eldariont/svim"}, "SWIG": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SWIG/4.0.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SWIG/4.0.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SWIG/4.0.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SWIG/4.0.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SWIG/4.0.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SWIG/4.1.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "SWIG/3.0.12-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "SWIG/4.0.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.", "homepage": "http://www.swig.org/"}, "sympy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"sympy/1.9-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "sympy/1.9-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "sympy/1.10.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "sympy/1.10.1-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "sympy/1.11.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "sympy/1.11.1-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "sympy/1.12-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "sympy/1.12-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "sympy/1.5.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "sympy/1.6.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "sympy/1.7.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.", "homepage": "https://sympy.org/"}, "synapseclient": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"synapseclient/3.0.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cryptography-3.3.2, Deprecated-1.2.14, keyring-23.4.1, keyrings.alt-3.1, synapseclient-3.0.0, wrapt-1.14.1"}}, "description": "The synapseclient package provides an interface to Synapse, a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate, providing support for: integrated presentation of data, code and text fine grained access control provenance tracking The synapseclient package lets you communicate with the cloud-hosted Synapse service to access data and create shared data analysis projects from within Python scripts or at the interactive Python console. Other Synapse clients exist for R, Java, and the web. The Python client can also be used from the command line.", "homepage": "https://help.synapse.org/docs/"}, "synthcity": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"synthcity/0.2.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "decaf_synthetic_data-0.1.6, feather-format-0.4.1, fflows-0.0.3, fsspec-2022.7.1, functorch-0.2.0, geomloss-0.2.5, inflate64-0.3.1, keopscore-2.1.1, loguru-0.6.0, multivolumefile-0.2.3, nflows-0.14, opacus-1.3.0, opt_einsum-3.3.0, pgmpy-0.1.21, py7zr-0.20.4, pybcj-1.0.1, pycox-0.2.3, pycryptodomex-3.17, pykeops-2.1.1, pyppmd-1.0.0, pyts-0.12.0, pyzstd-0.15.4, synthcity-0.2.4, texttable-1.6.7, thinc-8.1.9, torchtuples-0.2.2, tsai-0.3.5, xgbse-0.2.3"}}, "description": "A library for generating and evaluating synthetic tabular data.", "homepage": "https://github.com/vanderschaarlab/synthcity"}, "Szip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Szip/2.1.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Szip/2.1.1-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Szip/2.1.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Szip/2.1.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Szip/2.1.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Szip/2.1.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Szip/2.1.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Szip/2.1.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Szip compression software, providing lossless compression of scientific data", "homepage": "https://www.hdfgroup.org/doc_resource/SZIP/"}, "tabixpp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tabixpp/1.1.2-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tabixpp/1.1.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "C++ wrapper to tabix indexer", "homepage": "https://github.com/ekg/tabixpp"}, "TAMkin": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TAMkin/1.2.6-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "TAMkin is a post-processing toolkit for normal mode analysis, thermochemistry and reaction kinetics. It uses a Hessian computation from a standard computational chemistry program as its input.", "homepage": "https://molmod.github.io/tamkin/"}, "task-spooler": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"task-spooler/1.0.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "task spooler is a Unix batch system where the tasks spooled run one after the other.", "homepage": "http://viric.name/soft/ts/"}, "tbb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tbb/2020.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tbb/2021.5.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tbb/2019_U9-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "tbb/2020.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "tbb/2020.3-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "tbb/2020.3-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.", "homepage": "https://github.com/oneapi-src/oneTBB"}, "Tcl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Tcl/8.6.9-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tcl/8.6.10-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tcl/8.6.10-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tcl/8.6.11-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tcl/8.6.11-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tcl/8.6.12-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tcl/8.6.12-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tcl/8.6.13-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tcl/8.6.13-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tcl/8.6.9-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.", "homepage": "http://www.tcl.tk/"}, "tcsh": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tcsh/6.22.04-GCCcore-10.3.0": {"clusters": ["accelgor", "joltik"]}, "tcsh/6.24.10-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tcsh/6.22.02-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "tcsh/6.22.03-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.", "homepage": "https://www.tcsh.org"}, "TELEMAC-MASCARET": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"TELEMAC-MASCARET/8p3r1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "TELEMAC-MASCARET is an integrated suite of solvers for use in the field of free-surface flow. Havingbeen used in the context of many studies throughout the world, it has become one of the major standards in its field.", "homepage": "http://www.opentelemac.org"}, "tensorboard": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tensorboard/2.8.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-1.0.0, cachetools-5.0.0, google-auth-2.5.0, google-auth-2.5.0, google-auth-oauthlib-0.4.6, grpcio-1.43.0, importlib_metadata-4.10.1, Markdown-3.3.6, oauthlib-3.1.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.8, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_wit-1.8.1, Werkzeug-2.0.2"}, "tensorboard/2.10.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-1.2.0, cachetools-5.2.0, google-auth-2.11.1, google-auth-oauthlib-0.4.6, grpcio-1.49.1, Markdown-3.4.1, oauthlib-3.2.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.1, rsa-4.9, tensorboard-2.10.0, tensorboard_data_server-0.6.1, tensorboard_plugin_wit-1.8.1, Werkzeug-2.2.2"}}, "description": "TensorBoard is a suite of web applications for inspecting and understanding your TensorFlow runsand graphs.", "homepage": "https://github.com/tensorflow/tensorboard"}, "tensorboardX": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tensorboardX/2.5.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "tensorboardX-2.5.1"}, "tensorboardX/2.6.2.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "tensorboardX-2.6.2.2"}, "tensorboardX/2.6.2.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "tensorboardX-2.6.2.2"}, "tensorboardX/2.2-foss-2020b-PyTorch-1.7.1": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "tensorboardX/2.1-fosscuda-2020b-PyTorch-1.7.1": {"clusters": ["joltik"]}, "tensorboardX/2.2-fosscuda-2020b-PyTorch-1.7.1": {"clusters": ["joltik"]}}, "description": "Tensorboard for PyTorch.", "homepage": "https://github.com/lanpa/tensorboardX"}, "tensorflow-probability": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tensorflow-probability/0.14.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cloudpickle-2.2.1, tensorflow-probability-0.14.0"}, "tensorflow-probability/0.19.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cloudpickle-2.2.0, tensorflow-probability-0.19.0"}}, "description": "TensorFlow Probability (TFP) is a library for probabilistic reasoning and statistical analysis.", "homepage": "https://www.tensorflow.org/probability"}, "TensorFlow": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TensorFlow/2.4.1-foss-2020b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-0.10.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.0, dill-0.3.3, gast-0.3.3, google-auth-1.24.0, google-auth-oauthlib-0.4.2, google-pasta-0.2.0, grpcio-1.32.0, gviz-api-1.9.0, h5py-2.10.0, Keras-Preprocessing-1.1.2, Markdown-3.3.3, oauthlib-3.1.0, opt-einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7, tblib-1.7.0, tensorboard-2.4.1, tensorboard-plugin-profile-2.4.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.4.1, tensorflow-estimator-2.4.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1"}, "TensorFlow/2.4.1-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "absl-py-0.10.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.0, dill-0.3.3, gast-0.3.3, google-auth-1.24.0, google-auth-oauthlib-0.4.2, google-pasta-0.2.0, grpcio-1.32.0, gviz-api-1.9.0, h5py-2.10.0, Keras-Preprocessing-1.1.2, Markdown-3.3.3, oauthlib-3.1.0, opt-einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7, tblib-1.7.0, tensorboard-2.4.1, tensorboard-plugin-profile-2.4.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.4.1, tensorflow-estimator-2.4.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1"}, "TensorFlow/2.5.0-fosscuda-2020b": {"clusters": ["accelgor", "joltik"], "extensions": "absl-py-0.12.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, dill-0.3.3, gast-0.4.0, google-auth-1.30.0, google-auth-oauthlib-0.4.4, google-pasta-0.2.0, grpcio-1.34.1, gviz-api-1.9.0, keras_nightly-2.5.0.dev2021032900, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.0, opt_einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.5.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.4.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.5.0, tensorflow_estimator-2.5.0, termcolor-1.1.0, Werkzeug-2.0.0, wrapt-1.12.1"}, "TensorFlow/2.5.3-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "absl-py-0.15.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.4, dill-0.3.4, gast-0.4.0, google-auth-1.35.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.43.0, gviz-api-1.10.0, keras_nightly-2.5.0.dev2021032900, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.5.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.1, TensorFlow-2.5.3, tensorflow_estimator-2.5.0, termcolor-1.1.0, Werkzeug-2.0.2, wrapt-1.13.3"}, "TensorFlow/2.6.0-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"], "extensions": "absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, clang-5.0, dill-0.3.3, gast-0.4.0, google-auth-1.35.0, google-auth-oauthlib-0.4.5, google-pasta-0.2.0, grpcio-1.39.0, gviz-api-1.9.0, keras-2.6.0, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.1, opt_einsum-3.3.0, portpicker-1.4.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.6.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.6.0, tensorflow_estimator-2.6.0, termcolor-1.1.0, Werkzeug-2.0.1, wrapt-1.12.1"}, "TensorFlow/2.6.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, clang-5.0, dill-0.3.3, gast-0.4.0, google-auth-1.35.0, google-auth-oauthlib-0.4.5, google-pasta-0.2.0, grpcio-1.39.0, gviz-api-1.9.0, keras-2.6.0, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.1, opt_einsum-3.3.0, portpicker-1.4.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.6.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.6.0, tensorflow_estimator-2.6.0, termcolor-1.1.0, Werkzeug-2.0.1, wrapt-1.12.1"}, "TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"], "extensions": "absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.0.0, dill-0.3.4, gast-0.4.0, google-auth-2.6.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.43.0, gviz-api-1.10.0, keras-2.7.0, Keras_Preprocessing-1.1.2, Markdown-3.3.6, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.0, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.1, TensorFlow-2.7.1, tensorflow_estimator-2.7.0, termcolor-1.1.0, Werkzeug-2.0.3, wrapt-1.13.3"}, "TensorFlow/2.7.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.0.0, dill-0.3.4, gast-0.4.0, google-auth-2.6.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.43.0, gviz-api-1.10.0, keras-2.7.0, Keras_Preprocessing-1.1.2, Markdown-3.3.6, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.0, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.1, TensorFlow-2.7.1, tensorflow_estimator-2.7.0, termcolor-1.1.0, Werkzeug-2.0.3, wrapt-1.13.3"}, "TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"], "extensions": "absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.2.1, gast-0.4.0, google-auth-2.16.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.51.1, gviz-api-1.10.0, keras-2.11.0, Markdown-3.4.1, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.9, tblib-1.7.0, tensorboard-2.11.1, tensorboard-data-server-0.6.1, tensorboard-plugin-profile-2.11.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.11.0, tensorflow-estimator-2.11.0, termcolor-1.1.0, Werkzeug-2.2.2, wrapt-1.14.1"}, "TensorFlow/2.11.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.2.1, gast-0.4.0, google-auth-2.16.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.51.1, gviz-api-1.10.0, keras-2.11.0, Markdown-3.4.1, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.9, tblib-1.7.0, tensorboard-2.11.1, tensorboard-data-server-0.6.1, tensorboard-plugin-profile-2.11.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.11.0, tensorflow-estimator-2.11.0, termcolor-1.1.0, Werkzeug-2.2.2, wrapt-1.14.1"}, "TensorFlow/2.13.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, cachetools-5.3.1, google-auth-2.22.0, google-auth-oauthlib-1.0.0, google-pasta-0.2.0, grpcio-1.56.2, gviz-api-1.10.0, keras-2.13.1, Markdown-3.4.4, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.3.0, requests-oauthlib-1.3.1, rsa-4.9, tblib-2.0.0, tensorboard-2.13.0, tensorboard-data-server-0.7.1, tensorboard-plugin-profile-2.13.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.13.0, tensorflow-estimator-2.13.0, termcolor-2.3.0, Werkzeug-2.3.6, wrapt-1.15.0"}, "TensorFlow/2.13.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, cachetools-5.3.1, google-auth-2.22.0, google-auth-oauthlib-1.0.0, google-pasta-0.2.0, grpcio-1.57.0, gviz-api-1.10.0, keras-2.13.1, Markdown-3.4.4, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.3.0, requests-oauthlib-1.3.1, rsa-4.9, tblib-2.0.0, tensorboard-2.13.0, tensorboard-data-server-0.7.1, tensorboard-plugin-profile-2.13.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.13.0, tensorflow-estimator-2.13.0, termcolor-2.3.0, Werkzeug-2.3.7, wrapt-1.15.0"}, "TensorFlow/1.15.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "absl-py-0.8.1, astor-0.8.0, gast-0.2.2, google-pasta-0.1.8, grpcio-1.25.0, Keras-Applications-1.0.8, Keras-Preprocessing-1.1.0, Markdown-3.1.1, opt-einsum-3.1.0, protobuf-3.10.0, tensorboard-1.15.0, TensorFlow-1.15.0, tensorflow-estimator-1.15.1, termcolor-1.1.0, Werkzeug-0.16.0, wrapt-1.11.2"}, "TensorFlow/2.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "absl-py-0.8.1, astor-0.8.0, cachetools-3.1.1, gast-0.2.2, google-auth-1.7.1, google-auth-oauthlib-0.4.1, google-pasta-0.1.8, grpcio-1.25.0, Keras-Applications-1.0.8, Keras-Preprocessing-1.1.0, Markdown-3.1.1, oauthlib-3.1.0, opt-einsum-3.1.0, pyasn1-modules-0.2.7, requests-oauthlib-1.3.0, rsa-4.0, tensorboard-2.1.0, TensorFlow-2.1.0, tensorflow-estimator-2.1.0, termcolor-1.1.0, Werkzeug-0.16.0, wrapt-1.11.2"}, "TensorFlow/2.2.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "absl-py-0.9.0, astunparse-1.6.3, cachetools-4.1.0, gast-0.3.3, google-auth-1.14.2, google-auth-oauthlib-0.4.1, google-pasta-0.2.0, grpcio-1.28.1, Keras-Applications-1.0.8, Keras-Preprocessing-1.1.0, Markdown-3.2.1, oauthlib-3.1.0, opt-einsum-3.2.1, protobuf-3.11.3, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.0, scipy-1.4.1, tensorboard-2.2.1, tensorboard-plugin-wit-1.6.0.post3, TensorFlow-2.2.0, tensorflow-estimator-2.2.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1"}, "TensorFlow/2.2.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "absl-py-0.12.0, astunparse-1.6.3, cachetools-4.2.1, gast-0.3.3, google-auth-1.28.0, google-auth-oauthlib-0.4.4, google-pasta-0.2.0, grpcio-1.36.1, gviz-api-1.9.0, Keras-Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.0, opt-einsum-3.3.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tensorboard-2.2.2, tensorboard-plugin-profile-2.2.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.2.2, tensorflow-estimator-2.2.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1"}, "TensorFlow/2.2.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-0.12.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, gast-0.3.3, google-auth-1.35.0, google-auth-oauthlib-0.4.5, google-pasta-0.2.0, grpcio-1.39.0, gviz-api-1.9.0, h5py-2.10.0, Keras-Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.1, opt-einsum-3.3.0, portpicker-1.4.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tensorboard-2.2.2, tensorboard-plugin-profile-2.2.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.2.3, tensorflow-estimator-2.2.0, termcolor-1.1.0, Werkzeug-2.0.1, wrapt-1.12.1"}, "TensorFlow/2.3.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "absl-py-0.10.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.1.1, gast-0.3.3, google-auth-1.22.1, google-auth-oauthlib-0.4.1, google-pasta-0.2.0, grpcio-1.33.1, gviz-api-1.9.0, Keras-Preprocessing-1.1.2, Markdown-3.2.2, oauthlib-3.1.0, opt-einsum-3.3.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.6, tensorboard-2.3.0, tensorboard-plugin-profile-2.3.0, tensorboard-plugin-wit-1.7.0, TensorFlow-2.3.1, tensorflow-estimator-2.3.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1"}, "TensorFlow/2.5.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "absl-py-0.12.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, dill-0.3.3, gast-0.4.0, google-auth-1.30.0, google-auth-oauthlib-0.4.4, google-pasta-0.2.0, grpcio-1.34.1, gviz-api-1.9.0, keras_nightly-2.5.0.dev2021032900, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.0, opt_einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.5.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.4.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.5.0, tensorflow_estimator-2.5.0, termcolor-1.1.0, Werkzeug-2.0.0, wrapt-1.12.1"}, "TensorFlow/2.8.4-foss-2021b": {"clusters": ["gallade"], "extensions": "absl-py-1.0.0, astunparse-1.6.3, cachetools-5.1.0, google-auth-2.6.6, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.46.1, keras-2.8.0, Keras_Preprocessing-1.1.2, Markdown-3.3.7, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.2.8, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_wit-1.8.1, TensorFlow-2.8.4, tensorflow_estimator-2.8.0, termcolor-1.1.0, Werkzeug-2.1.2, wrapt-1.14.1"}}, "description": "An open-source software library for Machine Intelligence", "homepage": "https://www.tensorflow.org/"}, "texlive": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"texlive/20230313-GCC-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "texlive/20210324-GCC-11.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "TeX is a typesetting language. Instead of visually formatting your text, you enter your manuscript text intertwined with TeX commands in a plain text file. You then run TeX to produce formatted output, such as a PDF file. Thus, in contrast to standard word processors, your document is a separate file that does not pretend to be a representation of the final typeset output, and so can be easily edited and manipulated.", "homepage": "https://tug.org"}, "Theano": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Theano/1.1.2-fosscuda-2020b-PyMC": {"clusters": ["accelgor", "joltik"]}, "Theano/1.1.2-intel-2021b-PyMC": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Theano/1.0.4-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Theano/1.1.2-foss-2020b-PyMC": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Theano/1.0.4-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"]}, "Theano/1.1.2-intel-2020b-PyMC": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "Theano is a Python library that allows you to define, optimize,and evaluate mathematical expressions involving multi-dimensional arrays efficiently.", "homepage": "https://deeplearning.net/software/theano"}, "tidymodels": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tidymodels/1.1.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cli-3.6.1, conflicted-1.2.0, dials-1.2.0, DiceDesign-1.9, dplyr-1.1.2, ggplot2-3.4.2, GPfit-1.0-8, hardhat-1.3.0, infer-1.0.4, modeldata-1.1.0, modelenv-0.1.1, parsnip-1.1.0, pillar-1.9.0, recipes-1.0.6, rsample-1.1.1, slider-0.3.0, tibble-3.2.1, tidymodels-1.1.0, tune-1.1.1, vctrs-0.6.3, warp-0.2.0, workflows-1.1.3, workflowsets-1.0.1, yardstick-1.2.0"}}, "description": "tidymodels is a 'meta-package' for modeling and statistical analysis that shares the underlying design philosophy, grammar, and data structures of the tidyverse.", "homepage": "https://tidymodels.tidymodels.org"}, "timm": {"clusters": ["accelgor", "joltik"], "versions": {"timm/0.6.13-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "huggingface_hub-0.13.4, safetensors-0.3.0, timm-0.6.13"}, "timm/0.9.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "huggingface_hub-0.15.1, safetensors-0.3.1, timm-0.9.2"}}, "description": "timm is a library containing SOTA computer vision models, layers, utilities,optimizers, schedulers, data-loaders, augmentations, and training/evaluationscripts. It comes packaged with >700 pretrained models, and is designed to beflexible and easy to use.", "homepage": "https://huggingface.co/docs/timm"}, "Tk": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Tk/8.6.10-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tk/8.6.10-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tk/8.6.11-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tk/8.6.11-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tk/8.6.12-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tk/8.6.12-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tk/8.6.13-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tk/8.6.9-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.", "homepage": "https://www.tcl.tk/"}, "Tkinter": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Tkinter/3.8.2-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tkinter/3.8.6-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tkinter/3.9.5-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tkinter/3.9.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tkinter/3.10.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tkinter/3.10.8-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tkinter/3.11.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tkinter/2.7.16-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Tkinter/2.7.18-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Tkinter/2.7.18-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Tkinter/3.7.4-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Tkinter module, built with the Python buildsystem", "homepage": "https://python.org/"}, "TOBIAS": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"TOBIAS/0.12.12-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "configs-3.0.3, kneed-0.7.0, logomaker-0.8, MOODS-python-1.9.4.1, PyPDF2-1.26.0, reportlab-3.6.2, statistics-1.0.3.5, svist4get-1.2.24, TOBIAS-0.12.12, Wand-0.6.7"}}, "description": "TOBIAS is a collection of command-line bioinformatics tools forperforming footprinting analysis on ATAC-seq data, and includes: Correction ofTn5 insertion bias; Calculation of footprint scores within regulatory regions;Estimation of bound/unbound transcription factor binding sites; andVisualization of footprints within and across different conditions", "homepage": "https://github.com/loosolab/TOBIAS"}, "Togl": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Togl/2.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "A Tcl/Tk widget for OpenGL rendering.", "homepage": "https://sourceforge.net/projects/togl/"}, "tokenizers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tokenizers/0.12.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "tokenizers/0.13.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Fast State-of-the-Art Tokenizers optimized for Research and Production", "homepage": "https://github.com/huggingface/tokenizers"}, "TOPAS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TOPAS/3.9-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "TOPAS wraps and extends the Geant4 Simulation Toolkit to make advanced Monte Carlo simulation of allforms of radiotherapy easier to use for medical physicists.", "homepage": "https://www.topasmc.org"}, "TopHat": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TopHat/2.1.2-GCC-11.2.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "TopHat/2.1.2-GCC-11.3.0-Python-2.7.18": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "TopHat/2.1.2-GCC-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "TopHat/2.1.2-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "TopHat/2.1.2-iimpi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "TopHat is a fast splice junction mapper for RNA-Seq reads.", "homepage": "http://ccb.jhu.edu/software/tophat/"}, "torchaudio": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"torchaudio/0.12.0-foss-2022a-PyTorch-1.12.0-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "torchaudio/0.12.0-foss-2022a-PyTorch-1.12.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Data manipulation and transformation for audio signalprocessing, powered by PyTorch", "homepage": "https://github.com/pytorch/audio"}, "torchtext": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"torchtext/0.14.1-foss-2022a-PyTorch-1.12.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Data loaders and abstractions for text and NLP", "homepage": "https://github.com/pytorch/text"}, "torchvf": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"torchvf/0.1.3-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "joltik"], "extensions": "edt-2.3.1, torchvf-0.1.3"}, "torchvf/0.1.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "edt-2.3.1, torchvf-0.1.3"}}, "description": "TorchVF is a unifying Python library for using vector fields for efficient proposal-free instance segmentation.", "homepage": "https://github.com/ryanirl/torchvf"}, "torchvision": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"torchvision/0.8.2-fosscuda-2020b-PyTorch-1.7.1": {"clusters": ["accelgor", "joltik"]}, "torchvision/0.11.1-foss-2021a-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}, "torchvision/0.13.1-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "torchvision/0.13.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "torchvision/0.14.1-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "torchvision/0.8.2-foss-2020b-PyTorch-1.7.1": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "torchvision/0.11.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "torchvision/0.11.3-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "torchvision/0.7.0-foss-2019b-Python-3.7.4-PyTorch-1.6.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "Datasets, Transforms and Models specific to Computer Vision", "homepage": "https://github.com/pytorch/vision"}, "tornado": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tornado/6.3.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Tornado is a Python web framework and asynchronous networking library.", "homepage": "https://github.com/tornadoweb/tornado"}, "tqdm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tqdm/4.41.1-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "tqdm/4.47.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tqdm/4.56.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tqdm/4.61.2-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tqdm/4.62.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tqdm/4.64.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tqdm/4.64.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tqdm/4.66.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "tqdm/4.60.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A fast, extensible progress bar for Python and CLI", "homepage": "https://github.com/tqdm/tqdm"}, "Transformers": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Transformers/4.20.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "huggingface-hub-0.8.1, regex-2021.11.10, sacremoses-0.0.53, tokenizers-0.12.1, transformers-4.20.1"}, "Transformers/4.21.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "huggingface-hub-0.8.1, regex-2022.7.25, sacremoses-0.0.53, tokenizers-0.12.1, transformers-4.21.1"}, "Transformers/4.24.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "huggingface-hub-0.10.1, regex-2022.10.31, tokenizers-0.13.2, transformers-4.24.0"}, "Transformers/4.30.2-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "%(namelower)s-4.30.2, huggingface-hub-0.15.1, regex-2023.6.3, safetensors-0.3.1"}}, "description": "State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0", "homepage": "https://github.com/huggingface/transformers"}, "TreeMix": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"TreeMix/1.13-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations.", "homepage": "http://bitbucket.org/nygcresearch/treemix"}, "TRF": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TRF/4.09.1-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "TRF/4.09.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "TRF/4.09.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "TRF/4.09-linux64": {"clusters": ["skitty"]}}, "description": "Tandem repeats finder: a program to analyze DNA sequences. Legacy version.", "homepage": "https://tandem.bu.edu/trf/trf.html"}, "trimAl": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"trimAl/1.4.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "trimAl/1.4.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "EVB, FEP and LIE simulator.", "homepage": "https://github.com/scapella/trimal"}, "Trimmomatic": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Trimmomatic/0.39-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Trimmomatic/0.38-Java-1.8": {"clusters": ["skitty"]}}, "description": "Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.", "homepage": "http://www.usadellab.org/cms/?page=trimmomatic"}, "Trinity": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Trinity/2.15.1-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Trinity/2.8.5-GCC-8.3.0-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Trinity/2.9.1-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Trinity/2.10.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.", "homepage": "https://trinityrnaseq.github.io"}, "TRUST4": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"TRUST4/1.0.6-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Tcr Receptor Utilities for Solid Tissue (TRUST) is acomputational tool to analyze TCR and BCR sequences using unselected RNAsequencing data, profiled from solid tissues, including tumors. TRUST4 performsde novo assembly on V, J, C genes including the hypervariablecomplementarity-determining region 3 (CDR3) and reports consensus of BCR/TCRsequences. TRUST4 then realigns the contigs to IMGT reference gene sequences toreport the corresponding information. TRUST4 supports both single-end andpaired-end sequencing data with any read length.", "homepage": "https://github.com/liulab-dfci/TRUST4"}, "TurboVNC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TurboVNC/2.2.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "TurboVNC/2.2.3-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads.", "homepage": "https://www.turbovnc.org"}, "typing-extensions": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"typing-extensions/3.7.4.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "typing-extensions/3.10.0.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "typing-extensions/3.10.0.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "typing-extensions/4.3.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "typing-extensions/4.8.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "typing-extensions/4.9.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "typing-extensions/4.9.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Typing Extensions \u2013 Backported and Experimental Type Hints for Python", "homepage": "https://github.com/python/typing/blob/master/typing_extensions/README.rst"}, "UCC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UCC/1.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCC/1.1.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCC/1.2.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCC/1.2.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "UCC (Unified Collective Communication) is a collectivecommunication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.", "homepage": "https://www.openucx.org/"}, "UCX-CUDA": {"clusters": ["accelgor", "donphan", "joltik"], "versions": {"UCX-CUDA/1.10.0-GCCcore-10.3.0-CUDA-11.3.1": {"clusters": ["accelgor", "joltik"]}, "UCX-CUDA/1.11.2-GCCcore-11.2.0-CUDA-11.4.1": {"clusters": ["accelgor", "joltik"]}, "UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0": {"clusters": ["accelgor", "donphan", "joltik"]}, "UCX-CUDA/1.14.1-GCCcore-12.3.0-CUDA-12.1.1": {"clusters": ["accelgor", "donphan", "joltik"]}}, "description": "Unified Communication XAn open-source production grade communication framework for data centricand high-performance applicationsThis module adds the UCX CUDA support.", "homepage": "http://www.openucx.org/"}, "UCX": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UCX/1.8.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCX/1.9.0-GCCcore-10.2.0-CUDA-11.1.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCX/1.9.0-GCCcore-10.2.0-CUDA-11.2.1": {"clusters": ["accelgor", "donphan", "joltik"]}, "UCX/1.9.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCX/1.10.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCX/1.11.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCX/1.12.1-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCX/1.13.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCX/1.14.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCX/1.15.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UCX/1.6.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Unified Communication XAn open-source production grade communication framework for data centricand high-performance applications", "homepage": "http://www.openucx.org/"}, "UDUNITS": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UDUNITS/2.2.26-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UDUNITS/2.2.28-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UDUNITS/2.2.28-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UDUNITS/2.2.28-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UDUNITS/2.2.28-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UDUNITS/2.2.28-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UDUNITS/2.2.26-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "UDUNITS/2.2.26-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "UDUNITS/2.2.26-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.", "homepage": "https://www.unidata.ucar.edu/software/udunits/"}, "umap-learn": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"umap-learn/0.5.3-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pynndescent-0.5.7, umap-learn-0.5.3"}, "umap-learn/0.5.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pynndescent-0.5.7, umap-learn-0.5.3"}, "umap-learn/0.5.5-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pynndescent-0.5.11, umap-learn-0.5.5"}, "umap-learn/0.4.6-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction.", "homepage": "https://pypi.org/project/umap-learn/"}, "uncertainties": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"uncertainties/3.1.7-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "uncertainties-3.1.7"}}, "description": "Transparent calculations with uncertainties on the quantities involved (aka error propagation); fast calculation of derivatives", "homepage": "http://uncertainties-python-package.readthedocs.io"}, "uncertainty-calibration": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"uncertainty-calibration/0.0.9-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "parameterized-0.8.1, uncertainty-calibration-0.0.9"}}, "description": "Python library to measure the calibration error of models, including confidence intervals computed byBootstrap resampling, and code to recalibrate models.", "homepage": "https://github.com/p-lambda/verified_calibration"}, "Unidecode": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Unidecode/1.3.6-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Unidecode/1.1.1-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Python library for lossy ASCII transliterations of Unicode text (port of Text::Unidecode Perl module)", "homepage": "https://github.com/avian2/unidecode"}, "UniFrac": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UniFrac/1.3.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "UniFrac is the de facto repository for high-performance phylogenetic diversitycalculations. The methods in this repository are based on an implementation ofthe Strided State UniFrac algorithm which is faster, and uses less memory thanFast UniFrac. Strided State UniFrac supports Unweighted UniFrac, WeightedUniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac, inboth double and single precision (fp32). This repository also includes StackedFaith (manuscript in preparation), a method for calculating Faith's PD that isfaster and uses less memory than the Fast UniFrac-based referenceimplementation.", "homepage": "https://github.com/biocore/unifrac-binaries"}, "unixODBC": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"unixODBC/2.3.11-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "unixODBC provides a uniform interface betweenapplication and database driver", "homepage": "https://www.unixodbc.org"}, "UnZip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"UnZip/6.0-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "UnZip/6.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "UnZip is an extraction utility for archives compressedin .zip format (also called \"zipfiles\"). Although highly compatible bothwith PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP'sown Zip program, our primary objectives have been portability andnon-MSDOS functionality.", "homepage": "http://www.info-zip.org/UnZip.html"}, "USEARCH": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"USEARCH/11.0.667-i86linux32": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "USEARCH is a unique sequence analysis tool which offers search and clustering algorithms that are often orders of magnitude faster than BLAST.", "homepage": "https://www.drive5.com/usearch/index.html"}, "utf8proc": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"utf8proc/2.6.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "utf8proc/2.7.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "utf8proc/2.8.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "utf8proc/2.8.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.", "homepage": "https://github.com/JuliaStrings/utf8proc"}, "util-linux": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"util-linux/2.34-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "util-linux/2.35-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "util-linux/2.36-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "util-linux/2.36-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "util-linux/2.37-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "util-linux/2.38-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "util-linux/2.38.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "util-linux/2.39-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "util-linux/2.33-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "Set of Linux utilities", "homepage": "http://www.kernel.org/pub/linux/utils/util-linux"}, "vaeda": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"vaeda/0.0.30-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "kneed-0.8.1, vaeda-0.0.30"}}, "description": "vaeda (variaitonal auto-encoder (vae) for doublet annotation (da)) is a Python package for doubletannotation in single cell RNA-sequencing.", "homepage": "https://github.com/kostkalab/vaeda"}, "Valgrind": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Valgrind/3.17.0-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Valgrind/3.18.1-gompi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Valgrind/3.18.1-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Valgrind/3.19.0-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Valgrind/3.20.0-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Valgrind: Debugging and profiling tools", "homepage": "https://valgrind.org"}, "VarScan": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"VarScan/2.4.4-Java-11": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Variant calling and somatic mutation/CNV detection for next-generation sequencing data", "homepage": "https://github.com/dkoboldt/varscan"}, "VASP": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VASP/5.4.4-iomkl-2020b-vtst-176-mt-20180516": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.2.1-NVHPC-21.2-CUDA-11.2.1": {"clusters": ["accelgor", "joltik"]}, "VASP/6.3.1-gomkl-2021a-VASPsol-20210413-vtst-184-Wannier90-3.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.3.1-NVHPC-21.2-CUDA-11.2.1": {"clusters": ["accelgor", "joltik"]}, "VASP/6.4.1-NVHPC-21.2-CUDA-11.2.1": {"clusters": ["accelgor", "donphan", "joltik"]}, "VASP/6.4.2-foss-2023a-VASPsol-20210413-vtst-197-Wannier90-3.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.4.2-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.4.2-gomkl-2023a-VASPsol-20210413-vtst-197-Wannier90-3.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.4.2-gomkl-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.4.2-NVHPC-21.2-CUDA-11.2.1": {"clusters": ["accelgor", "donphan", "joltik"]}, "VASP/5.4.4-intel-2019b-mt-20180516-ncl": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "VASP/5.4.4-intel-2019b-mt-20180516": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "VASP/6.1.2-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "VASP/6.1.2-gomkl-2020a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.1.2-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "VASP/6.2.0-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "VASP/6.2.0-gomkl-2020a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.2.0-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "VASP/6.2.1-gomkl-2021a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.3.0-gomkl-2021a-VASPsol-20210413": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.3.1-gomkl-2021a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.4.1-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.4.1-gomkl-2021a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.4.2-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "VASP/6.4.2-gomkl-2021a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scalematerials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics,from first principles.", "homepage": "http://www.vasp.at"}, "VBZ-Compression": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VBZ-Compression/1.0.3-gompi-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "VBZ-Compression/1.0.1-gompi-2020b": {"clusters": ["donphan", "gallade", "joltik", "skitty"]}}, "description": "VBZ compression HDF5 plugin for nanopolish", "homepage": "https://github.com/nanoporetech/vbz_compression"}, "vcflib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"vcflib/1.0.9-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "vcflib/1.0.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed genetic variations between individuals.", "homepage": "https://github.com/vcflib/vcflib"}, "vConTACT2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"vConTACT2/0.11.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "click-log-0.1.8, clusterone-0.15.3, coreapi-2.3.3, coreapi-cli-1.0.9, coreschema-0.0.4, iso8601-1.1.0, itypes-1.2.0, pytz-deprecation-shim-0.1.0.post0, raven-6.10.0, terminaltables-3.1.10, tzdata-2022.7, tzlocal-4.2, uritemplate-4.1.1, vConTACT2-0.11.3"}}, "description": "vConTACT2 is a tool to perform guilt-by-contig-association classification of viral genomic sequence data.", "homepage": "https://bitbucket.org/MAVERICLab/vcontact2"}, "velocyto": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"velocyto/0.17.17-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "loompy-3.0.7, numpy_groupies-0.9.20, velocyto-0.17.17"}, "velocyto/0.17.17-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "loompy-3.0.6, numpy_groupies-0.9.13, velocyto-0.17.17"}}, "description": "Velocyto is a library for the analysis of RNA velocity.", "homepage": "https://velocyto.org/velocyto.py/"}, "Velvet": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Velvet/1.2.10-foss-2023a-mt-kmer_191": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Velvet/1.2.10-GCC-11.2.0-mt-kmer_191": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Velvet/1.2.10-GCC-8.3.0-mt-kmer_191": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Sequence assembler for very short reads", "homepage": "https://www.ebi.ac.uk/~zerbino/velvet/"}, "VEP": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"VEP/105-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "Bio::EnsEMBL::XS-2.3.2"}, "VEP/107-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "Bio::EnsEMBL::XS-2.3.2"}}, "description": "Variant Effect Predictor (VEP) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions. Includes EnsEMBL-XS, which provides pre-compiled replacements for frequently used routines in VEP.", "homepage": "https://www.ensembl.org/info/docs/tools/vep"}, "VESTA": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"VESTA/3.5.8-gtk3": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "VESTA is a 3D visualization program for structured models, volumetric data such as electron/nuclear densities, and crystal morphologies.", "homepage": "http://www.jp-minerals.org/vesta"}, "VirSorter2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VirSorter2/2.2.4-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "VirSorter2-2.2.4"}}, "description": "VirSorter2 applies a multi-classifier, expert-guided approach to detect diverse DNA and RNA virus genomes.", "homepage": "https://github.com/jiarong/VirSorter2"}, "virtualenv": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"virtualenv/20.23.1-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "distlib-0.3.6, filelock-3.12.2, platformdirs-3.8.0, virtualenv-20.23.1"}, "virtualenv/20.24.6-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "distlib-0.3.7, filelock-3.13.0, platformdirs-3.11.0, virtualenv-20.24.6"}}, "description": "A tool for creating isolated virtual python environments.", "homepage": "https://github.com/pypa/virtualenv"}, "vispr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"vispr/0.4.14-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "VISPR - A visualization framework for CRISPR data.", "homepage": "https://pypi.org/project/vispr/"}, "VisPy": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VisPy/0.12.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "freetype_py-2.4.0, hsluv-5.0.3, vispy-0.12.2"}}, "description": "VisPy is a high-performance interactive 2D/3D data visualization library leveraging the computational power of modern Graphics Processing Units (GPUs) through the OpenGL library to display very large datasets.", "homepage": "https://vispy.org"}, "vitessce-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"vitessce-python/20230222-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.8.0, black-23.1.0, fsspec-2023.1.0, hatch-fancy-pypi-readme-22.8.0, hatch-vcs-0.3.0, hatchling-1.11.1, mypy_extensions-1.0.0, natsort-8.2.0, negspy-0.2.24, ome-zarr-0.2.1, pathspec-0.10.1, tifffile-2022.10.10, vitessce-python-20230222"}}, "description": "Python API and Jupyter widget facilitating interactivevisualization of spatial single-cell data with Vitessce.", "homepage": "https://github.com/vitessce/vitessce-python"}, "vitessceR": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "plumber-1.2.1, sodium-1.2.1, vitessceR-0.99.0-20230110"}}, "description": "Vitessce is a visual integration tool for exploration of spatial single-cell experiments.", "homepage": "https://github.com/vitessce/vitessceR"}, "Voro++": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"Voro++/0.4.6-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Voro++/0.4.6-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Voro++/0.4.6-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Voro++/0.4.6-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Voro++/0.4.6-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Voro++ is a software library for carrying out three-dimensional computations of the Voronoitessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations,computing the Voronoi cell for each particle individually. It is particularly well-suited for applications thatrely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be usedto analyze a system of particles.", "homepage": "http://math.lbl.gov/voro++/"}, "vsc-mympirun": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"vsc-mympirun/5.2.6": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.6.0, setuptools-41.6.0, vsc-base-3.3.1, vsc-install-0.17.15, vsc-mympirun-5.2.6"}, "vsc-mympirun/5.2.7": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.0, setuptools-41.6.0, vsc-base-3.4.0, vsc-install-0.17.19, vsc-mympirun-5.2.7"}, "vsc-mympirun/5.2.9": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.1, setuptools-41.6.0, vsc-base-3.4.3, vsc-install-0.17.21, vsc-mympirun-5.2.9"}, "vsc-mympirun/5.2.10": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.1, setuptools-41.6.0, vsc-base-3.4.3, vsc-install-0.17.21, vsc-mympirun-5.2.10"}, "vsc-mympirun/5.2.11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.1, setuptools-41.6.0, vsc-base-3.4.3, vsc-install-0.17.22, vsc-mympirun-5.2.11"}, "vsc-mympirun/5.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "funcsigs-1.0.2, future-0.18.3, IPy-1.01, mock-5.0.1, pbr-5.11.1, setuptools-41.6.0, vsc-base-3.5.2, vsc-install-0.18.0, vsc-mympirun-5.3.0"}, "vsc-mympirun/5.3.1": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "funcsigs-1.0.2, future-0.18.3, IPy-1.01, mock-5.0.2, pbr-5.11.1, setuptools-41.6.0, vsc-base-3.5.3, vsc-install-0.18.5, vsc-mympirun-5.3.1"}, "vsc-mympirun/5.1.0": {"clusters": ["doduo"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.4.5, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.15.14, vsc-mympirun-5.1.0"}, "vsc-mympirun/5.2.0": {"clusters": ["doduo"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.0"}, "vsc-mympirun/5.2.2": {"clusters": ["doduo"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.2"}, "vsc-mympirun/5.2.3": {"clusters": ["doduo"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.3"}, "vsc-mympirun/5.2.4": {"clusters": ["doduo"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.4"}, "vsc-mympirun/5.2.5": {"clusters": ["doduo"], "extensions": "funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.5"}}, "description": "mympirun is a tool to make it easier for users of HPC clusters torun MPI programs with good performance.", "homepage": "https://github.com/hpcugent/vsc-mympirun"}, "VSCode": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VSCode/1.85.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos.", "homepage": "https://code.visualstudio.com/"}, "VSEARCH": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VSEARCH/2.22.1-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "VSEARCH/2.18.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.", "homepage": "https://github.com/torognes/vsearch"}, "VTK": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VTK/9.0.1-fosscuda-2020b": {"clusters": ["accelgor", "joltik"]}, "VTK/9.1.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "VTK/9.2.0.rc2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "VTK/9.2.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "VTK/8.2.0-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "VTK/8.2.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "VTK/8.2.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "VTK/9.0.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "VTK/9.0.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.", "homepage": "https://www.vtk.org"}, "wandb": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"wandb/0.13.6-GCC-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "docker-pycreds-0.4.0, pathtools-0.1.2, promise-2.3, sentry-sdk-1.11.1, setproctitle-1.3.2, shortuuid-1.0.11, urllib3-1.26.13, wandb-0.13.6"}, "wandb/0.13.4-GCCcore-11.3.0": {"clusters": ["donphan", "joltik"], "extensions": "charset-normalizer-2.0.12, docker-pycreds-0.4.0, pathtools-0.1.2, promise-2.3, sentry-sdk-1.8.0, setproctitle-1.3.2, shortuuid-1.0.9, termcolor-1.1.0, wandb-0.13.4, yaspin-2.1.0"}}, "description": "CLI and Python API for Weights and Biases: a tool for visualizing and trackingyour machine learning experiments.", "homepage": "https://www.wandb.com/"}, "Wannier90": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Wannier90/3.1.0-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Wannier90/3.1.0-gomkl-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Wannier90/3.1.0-gomkl-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Wannier90/3.1.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Wannier90/3.1.0-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Wannier90/3.1.0-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Wannier90/3.1.0-intel-2022a": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "A tool for obtaining maximally-localised Wannier functions", "homepage": "http://www.wannier.org"}, "Wayland": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Wayland/1.20.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Wayland/1.21.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Wayland/1.22.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.", "homepage": "https://wayland.freedesktop.org/"}, "Waylandpp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Waylandpp/1.0.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Wayland is an object oriented display protocol, which features request and events. Requests can be seen as method calls on certain objects, whereas events can be seen as signals of an object. This makes the Wayland protocol a perfect candidate for a C++ binding.The goal of this library is to create such a C++ binding for Wayland using the most modern C++ technology currently available, providing an easy to use C++ API to Wayland.", "homepage": "https://github.com/NilsBrause/waylandpp"}, "WebKitGTK+": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"WebKitGTK+/2.27.4-GCC-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "WebKitGTK+/2.37.1-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "WebKitGTK+ is a full-featured port of the WebKitrendering engine, suitable for projects requiring any kind of webintegration, from hybrid HTML/CSS applications to full-fledged webbrowsers. It offers WebKit's full functionality and is useful in a widerange of systems from desktop computers to embedded systems like phones,tablets, and televisions.", "homepage": "https://webkitgtk.org/"}, "WFA2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"WFA2/2.3.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm that takes advantage of homologous regions between the sequences to accelerate the alignment process.", "homepage": "https://github.com/smarco/WFA2-lib"}, "wget": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"wget/1.20.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "wget/1.20.3-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "wget/1.21.1-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It is a non-interactive commandline tool, so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc.", "homepage": "https://www.gnu.org/software/wget"}, "WhatsHap": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"WhatsHap/1.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "WhatsHap-1.1, xopen-1.4.0"}, "WhatsHap/1.4-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "WhatsHap-1.4, xopen-1.5.0"}, "WhatsHap/1.7-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "pulp-2.7.0, WhatsHap-1.7, xopen-1.5.0"}}, "description": "WhatsHap is a software for phasing genomic variants using DNAsequencing reads, also called read-based phasing or haplotype assembly. It isespecially suitable for long reads, but works also well with short reads.", "homepage": "https://whatshap.readthedocs.io"}, "worker": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"worker/1.6.12-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "worker/1.6.13-iimpi-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "worker/1.6.13-iimpi-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "worker/1.6.11-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Worker framework has been developed to help deal with parameter exploration experiments that would otherwise result in many jobs, forcing the user resort to scripting to retain her sanity; see also https://vscentrum.be/neutral/documentation/cluster-doc/running-jobs/worker-framework.", "homepage": "https://github.com/gjbex/worker"}, "wpebackend-fdo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"wpebackend-fdo/1.13.1-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "WPE WebKit allows embedders to create simple and performant systems based on Web platform technologies. It is a WebKit port designed with flexibility and hardware acceleration in mind, leveraging common 3D graphics APIs for best performance.", "homepage": "https://wpewebkit.org/"}, "wrapt": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"wrapt/1.15.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "wrapt-1.15.0"}, "wrapt/1.15.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "wrapt-1.15.0"}, "wrapt/1.15.0-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "wrapt-1.15.0"}}, "description": "The aim of the wrapt module is to provide a transparent objectproxy for Python, which can be used as the basis for the construction offunction wrappers and decorator functions.", "homepage": "https://pypi.org/project/wrapt/"}, "wrf-python": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"wrf-python/1.3.4.1-foss-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "wrapt-1.16.0, wrf-python-1.3.4.1"}}, "description": "A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model.", "homepage": "https://wrf-python.readthedocs.io"}, "wtdbg2": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"wtdbg2/2.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output.", "homepage": "https://github.com/ruanjue/wtdbg2"}, "wxPython": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"wxPython/4.1.1-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "wxPython/4.2.0-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Wraps the wxWidgets C++ toolkit and provides access to the user interface portions of the wxWidgets API, enabling Python applications to have a native GUI on Windows, Macs or Unix systems, with a native look and feel and requiring very little (if any) platform specific code.", "homepage": "https://www.wxpython.org/"}, "wxWidgets": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"wxWidgets/3.2.0-GCC-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "wxWidgets is a C++ library that lets developers createapplications for Windows, Mac OS X, Linux and other platforms with asingle code base. It has popular language bindings for Python, Perl,Ruby and many other languages, and unlike other cross-platform toolkits,wxWidgets gives applications a truly native look and feel because ituses the platform's native API rather than emulating the GUI.", "homepage": "https://www.wxwidgets.org"}, "X11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"X11/20190717-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "X11/20200222-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "X11/20201008-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "X11/20210518-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "X11/20210802-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "X11/20220504-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "X11/20221110-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "X11/20230603-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "X11/20190311-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "The X Window System (X11) is a windowing system for bitmap displays", "homepage": "https://www.x.org"}, "x264": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"x264/20190925-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "x264/20201026-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x264/20210414-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x264/20210613-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x264/20220620-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x264/20230226-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x264/20230226-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x264/20191217-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.", "homepage": "https://www.videolan.org/developers/x264.html"}, "x265": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"x265/3.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "x265/3.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x265/3.5-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x265/3.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x265/3.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x265/3.5-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x265/3.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "x265/3.3-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.", "homepage": "https://x265.org/"}, "xarray": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"xarray/0.19.0-foss-2021a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xarray/0.20.1-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xarray/0.20.1-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "xarray/2022.6.0-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xarray/2023.4.2-gfbf-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "xarray-2023.4.2"}, "xarray/2023.9.0-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "xarray-2023.9.0"}, "xarray/0.15.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "xarray/0.15.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "xarray/0.16.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "xarray/0.16.2-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "xarray/0.16.2-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "xarray (formerly xray) is an open source project and Python package that aims to bring the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the core pandas data structures.", "homepage": "https://github.com/pydata/xarray"}, "XCFun": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"XCFun/2.1.1-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "XCFun/2.1.1-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XCFun/2.1.1-GCCcore-11.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Arbitrary order exchange-correlation functional library", "homepage": "https://xcfun.readthedocs.io"}, "XCrySDen": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"XCrySDen/1.6.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "XCrySDen/1.6.2-intel-2022a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}}, "description": "XCrySDen is a crystalline and molecular structure visualisation program aiming at display of isosurfacesand contours, which can be superimposed on crystalline structures and interactively rotated and manipulated.It also possesses some tools for analysis of properties in reciprocal space such as interactive selectionof k-paths in the Brillouin zone for the band-structure plots, and visualisation of Fermi surfaces.", "homepage": "http://www.xcrysden.org/"}, "Xerces-C++": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Xerces-C++/3.2.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Xerces-C++/3.2.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Xerces-C++ is a validating XML parser written in a portablesubset of C++. Xerces-C++ makes it easy to give your application the ability toread and write XML data. A shared library is provided for parsing, generating,manipulating, and validating XML documents using the DOM, SAX, and SAX2APIs.", "homepage": "https://xerces.apache.org/xerces-c/"}, "XGBoost": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"XGBoost/1.7.2-foss-2022a-CUDA-11.7.0": {"clusters": ["accelgor"]}, "XGBoost/1.7.2-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable.", "homepage": "https://github.com/dmlc/xgboost"}, "XlsxWriter": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"XlsxWriter/1.4.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XlsxWriter/3.0.2-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XlsxWriter/3.0.8-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XlsxWriter/3.1.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XlsxWriter/3.1.3-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XlsxWriter/3.1.9-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A Python module for creating Excel XLSX files", "homepage": "https://xlsxwriter.readthedocs.io/"}, "XML-Compile": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"XML-Compile/1.63-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "extensions": "XML::Compile-1.63, XML::Compile::Cache-1.06, XML::Compile::SOAP-3.27, XML::Compile::WSDL11-3.08, XML::LibXML::Simple-1.01"}, "XML-Compile/1.63-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "XML::Compile-1.63, XML::Compile::Cache-1.06, XML::Compile::SOAP-3.28, XML::Compile::WSDL11-3.08, XML::LibXML::Simple-1.01"}}, "description": "Perl module for compilation based XML processing", "homepage": "https://metacpan.org/pod/XML::Compile"}, "XML-LibXML": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"XML-LibXML/2.0207-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Alien::Base-2.46, Alien::Libxml2-0.17, File::chdir-0.1010, XML::LibXML-2.0207"}, "XML-LibXML/2.0207-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Alien::Base-2.68, Alien::Libxml2-0.17, File::chdir-0.1011, XML::LibXML-2.0207"}, "XML-LibXML/2.0208-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Alien::Base-2.80, Alien::Build::Plugin::Download::GitLab-0.01, Alien::Libxml2-0.19, File::chdir-0.1011, XML::LibXML-2.0208"}, "XML-LibXML/2.0201-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Alien::Base-1.86, Alien::Libxml2-0.09, File::chdir-0.1010, XML::LibXML-2.0201"}, "XML-LibXML/2.0205-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Alien::Base-2.23, Alien::Libxml2-0.16, File::chdir-0.1010, XML::LibXML-2.0205"}, "XML-LibXML/2.0206-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "Alien::Base-2.38, Alien::Libxml2-0.17, File::chdir-0.1010, XML::LibXML-2.0206"}}, "description": "Perl binding for libxml2", "homepage": "https://metacpan.org/pod/distribution/XML-LibXML/LibXML.pod"}, "xorg-macros": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"xorg-macros/1.19.2-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xorg-macros/1.19.2-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xorg-macros/1.19.2-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xorg-macros/1.19.3-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xorg-macros/1.19.3-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xorg-macros/1.19.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xorg-macros/1.19.3-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xorg-macros/1.20.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xorg-macros/1.20.0-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xorg-macros/1.19.2-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "X.org macros utilities.", "homepage": "https://cgit.freedesktop.org/xorg/util/macros"}, "xtb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"xtb/6.6.1-gfbf-2023a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "xtb - An extended tight-binding semi-empirical program package.", "homepage": "https://xtb-docs.readthedocs.io"}, "Xvfb": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Xvfb/1.20.9-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Xvfb/1.20.11-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Xvfb/1.20.13-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Xvfb/21.1.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Xvfb/21.1.6-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Xvfb/21.1.8-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Xvfb/1.20.8-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Xvfb/1.20.9-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.", "homepage": "https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml"}, "xxd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"xxd/8.2.4220-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "xxd/8.2.4220-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xxd/9.0.1696-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xxd/9.0.2112-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "xxd/8.2.4220-GCCcore-10.2.0": {"clusters": ["gallade"]}, "xxd/8.2.4220-GCCcore-10.3.0": {"clusters": ["gallade"]}}, "description": "xxd is part of the VIM package and this will only install xxd, not vim!xxd converts to/from hexdumps of binary files.", "homepage": "https://www.vim.org"}, "XZ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"XZ/5.2.4-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XZ/5.2.5-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XZ/5.2.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XZ/5.2.5-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XZ/5.2.5-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XZ/5.2.5-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XZ/5.2.7-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XZ/5.4.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XZ/5.4.4-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "XZ/5.2.4-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "xz: XZ utilities", "homepage": "https://tukaani.org/xz/"}, "YACS": {"clusters": ["accelgor", "joltik"], "versions": {"YACS/0.1.8-GCCcore-10.3.0": {"clusters": ["accelgor", "joltik"]}}, "description": "YACS was created as a lightweight library to define andmanage system configurations, such as those commonly found in softwaredesigned for scientific experimentation. These \"configurations\"typically cover concepts like hyperparameters used in training a machinelearning model or configurable model hyperparameters, such as the depthof a convolutional neural network.", "homepage": "https://github.com/rbgirshick/yacs"}, "yaff": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"yaff/1.6.0-intel-2020a-Python-3.8.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "yaff/1.6.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "yaff/1.6.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Yaff stands for 'Yet another force field'. It is a pythonic force-field code.", "homepage": "https://molmod.github.io/yaff/"}, "Yambo": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Yambo/5.1.2-intel-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Yambo is a FORTRAN/C code for Many-Body calculations in solid state and molecular physics. Yambo relies on the Kohn-Sham wavefunctions generated by two DFT public codes: abinit, and PWscf.", "homepage": "http://www.yambo-code.org"}, "yaml-cpp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"yaml-cpp/0.7.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "yaml-cpp/0.7.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "yaml-cpp/0.6.3-GCCcore-8.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec", "homepage": "https://github.com/jbeder/yaml-cpp"}, "Yasm": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Yasm/1.3.0-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Yasm/1.3.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Yasm: Complete rewrite of the NASM assembler with BSD license", "homepage": "https://www.tortall.net/projects/yasm/"}, "YAXT": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"], "versions": {"YAXT/0.9.1-gompi-2021a": {"clusters": ["accelgor", "doduo", "donphan", "joltik", "skitty"]}, "YAXT/0.6.2-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Yet Another eXchange Tool", "homepage": "https://www.dkrz.de/redmine/projects/yaxt"}, "Z3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Z3/4.8.11-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Z3/4.8.12-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Z3/4.10.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "z3-solver-4.12.2.0"}, "Z3/4.12.2-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Z3/4.8.10-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Z3/4.8.9-GCCcore-9.3.0": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "Z3 is a theorem prover from Microsoft Research.", "homepage": "https://github.com/Z3Prover/z3"}, "zarr": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zarr/2.13.3-foss-2021b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.10.2, zarr-2.13.3"}, "zarr/2.13.3-foss-2022a": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.10.2, zarr-2.13.3"}, "zarr/2.16.0-foss-2022b": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.11.0, zarr-2.16.0"}}, "description": "Zarr is a Python package providing an implementation of compressed, chunked, N-dimensional arrays, designed for use in parallel computing.", "homepage": "https://zarr.readthedocs.io/en/stable/"}, "Zeo++": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Zeo++/0.3-intel-compilers-2023.1.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Zeo++ is a software package for analysis of crystalline porous materials. Zeo++ can be used to perform geometry-based analysis of structure and topology of the void space inside a material, to assemble or alternate structures as well as to generate structure representations to be used in structure similarity calculations. Zeo++ can be used to either analyze a single structure or perform high-throughput analysis of a large database.", "homepage": "https://www.zeoplusplus.org/"}, "ZeroMQ": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ZeroMQ/4.3.2-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.3-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.4-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.4-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.4-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.4-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.4-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "ZeroMQ/4.3.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.", "homepage": "https://www.zeromq.org/"}, "zfp": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zfp/1.0.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "zfp is a compressed format for representing multidimensional floating-point and integer arrays.zfp provides compressed-array classes that support high throughput read and write random access to individual arrayelements. zfp also supports serial and parallel (OpenMP and CUDA) compression of whole arrays, e.g., for applicationsthat read and write large data sets to and from disk.", "homepage": "https://github.com/LLNL/zfp"}, "Zip": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Zip/3.0-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "Zip/3.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Zip/3.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Zip is a compression and file packaging/archive utility.Although highly compatible both with PKWARE's PKZIP and PKUNZIPutilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectiveshave been portability and other-than-MSDOS functionality", "homepage": "http://www.info-zip.org/Zip.html"}, "zlib-ng": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zlib-ng/2.0.7-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "zlib data compression library for the next generation systems", "homepage": "https://github.com/zlib-ng/zlib-ng"}, "zlib": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zlib/1.2.11-GCCcore-8.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11-GCCcore-9.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.12-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.12-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.12": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.13-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.13-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.13": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zlib/1.2.11-GCCcore-8.2.0": {"clusters": ["doduo"]}}, "description": "zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.", "homepage": "http://www.zlib.net/"}, "Zopfli": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Zopfli/1.0.3-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Zopfli Compression Algorithm is a compression library programmed in C to performvery good, but slow, deflate or zlib compression.", "homepage": "https://github.com/google/zopfli"}, "zstd": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zstd/1.4.4-GCCcore-8.3.0": {"clusters": ["accelgor", "joltik"]}, "zstd/1.4.5-GCCcore-10.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zstd/1.4.9-GCCcore-10.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zstd/1.5.0-GCCcore-11.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zstd/1.5.2-GCCcore-11.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zstd/1.5.2-GCCcore-12.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zstd/1.5.5-GCCcore-12.3.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zstd/1.5.5-GCCcore-13.2.0": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}, "zstd/1.4.4-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.", "homepage": "https://facebook.github.io/zstd"}, "zUMIs": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"zUMIs/2.9.7-foss-2023a-R-4.3.2": {"clusters": ["accelgor", "doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A fast and flexible pipeline to process RNA sequencing data with UMIs.", "homepage": "https://github.com/sdparekh/zUMIs"}, "ABINIT": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ABINIT/9.2.1-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ABINIT/9.4.1-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "ABINIT/9.10.3-intel-2022a": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure ofsystems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), usingpseudopotentials and a planewave or wavelet basis.", "homepage": "https://www.abinit.org/"}, "ABRA2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ABRA2/2.22-iccifort-2019.5.281": {"clusters": ["doduo"]}, "ABRA2/2.23-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ABRA2/2.23-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Assembly Based ReAligner", "homepage": "https://github.com/mozack/abra2"}, "ABRicate": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ABRicate/0.9.9-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Mass screening of contigs for antimicrobial and virulence genes", "homepage": "https://github.com/tseemann/abricate"}, "ACTC": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"ACTC/1.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "ACTC converts independent triangles into triangle strips or fans.", "homepage": "https://sourceforge.net/projects/actc"}, "ADMIXTURE": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ADMIXTURE/1.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.", "homepage": "https://dalexander.github.io/admixture/"}, "alevin-fry": {"clusters": ["doduo"], "versions": {"alevin-fry/0.4.3-GCCcore-11.2.0": {"clusters": ["doduo"]}}, "description": "alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.", "homepage": "https://github.com/COMBINE-lab/alevin-fry"}, "Altair-EDEM": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"Altair-EDEM/2021.2": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "EDEM is high-performance software for bulk and granular material simulation.", "homepage": "https://www.altair.com/edem"}, "AmberMini": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"AmberMini/16.16.0-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A stripped-down set of just antechamber, sqm, and tleap.", "homepage": "https://github.com/choderalab/ambermini"}, "AmberTools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"AmberTools/20-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "AmberTools consists of several independently developed packages that work well by themselves, and with Amber itself. The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalized Born solvent models.", "homepage": "https://ambermd.org/"}, "antiSMASH": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"antiSMASH/5.1.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "antiSMASH-5.1.2, bcbio-gff-0.6.6, helperlibs-0.1.11, pyScss-1.3.7, pysvg-py3-0.2.2.post3"}, "antiSMASH/5.2.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "antiSMASH-5.2.0, bcbio-gff-0.6.6, helperlibs-0.2.1, pyScss-1.3.7, pysvg-py3-0.2.2.post3"}, "antiSMASH/6.0.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "antiSMASH-6.0.1, bcbio-gff-0.6.8, helperlibs-0.2.1, pyScss-1.3.7, pysvg-py3-0.2.2.post3"}}, "description": "antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes.", "homepage": "https://github.com/antismash/antismash"}, "ANTLR": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ANTLR/2.7.7-GCCcore-8.3.0-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ANTLR/2.7.7-GCCcore-10.3.0-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions.", "homepage": "https://www.antlr2.org/"}, "ANTs": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ANTs/2.3.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualizing multidimensional data.", "homepage": "https://stnava.github.io/ANTs/"}, "any2fasta": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"any2fasta/0.4.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "any2fasta/0.4.2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Convert various sequence formats to FASTA", "homepage": "https://github.com/tseemann/any2fasta"}, "aria2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"aria2/1.35.0-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "aria2 is a lightweight multi-protocol & multi-source command-line download utility.", "homepage": "https://aria2.github.io"}, "Arlequin": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Arlequin/3.5.2.2-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Arlequin: An Integrated Software for Population Genetics Data Analysis", "homepage": "http://cmpg.unibe.ch/software/arlequin35/Arlequin35.html"}, "arrow": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"arrow/0.17.1-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "R interface to the Apache Arrow C++ library", "homepage": "https://cran.r-project.org/web/packages/arrow"}, "Aspera-CLI": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"Aspera-CLI/3.9.6.1467.159c5b1": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "IBM Aspera Command-Line Interface (the Aspera CLI) isa collection of Aspera tools for performing high-speed, secure datatransfers from the command line. The Aspera CLI is for users andorganizations who want to automate their transfer workflows.", "homepage": "https://asperasoft.com"}, "attrdict": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"attrdict/2.0.1-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes.", "homepage": "https://github.com/bcj/AttrDict"}, "augur": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"augur/7.0.2-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "appdirs-1.4.3, augur-7.0.2, bcbio-gff-0.6.6, ConfigArgParse-1.2.1, datrie-0.8.2, importlib-metadata-1.6.0, ipython-genutils-0.2.0, jsonschema-3.2.0, jupyter-core-4.6.3, nbformat-5.0.5, packaging-20.3, phylo-treetime-0.7.5, pyrsistent-0.16.0, ratelimiter-1.2.0.post0, snakemake-5.10.0, toposort-1.5, traitlets-4.3.3, wrapt-1.12.1"}}, "description": "Pipeline components for real-time phylodynamic analysis", "homepage": "https://github.com/nextstrain/augur"}, "AutoGeneS": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"AutoGeneS/1.0.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "anndata-0.7.6, autogenes-1.0.4, cachetools-4.2.2, natsort-7.1.1"}}, "description": "AutoGeneS automatically extracts informative genes and reveals the cellular heterogeneityof bulk RNA samples.", "homepage": "https://github.com/theislab/AutoGeneS"}, "AutoMap": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"AutoMap/1.0-foss-2019b-20200324": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Tool to find regions of homozygosity (ROHs) from sequencing data.", "homepage": "https://github.com/mquinodo/AutoMap"}, "babl": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"babl/0.1.86-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "babl is pixel encoding and color space conversion engine in C", "homepage": "https://www.gegl.org/babl"}, "bam-readcount": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"bam-readcount/0.8.0-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Count DNA sequence reads in BAM files", "homepage": "https://github.com/genome/bam-readcount"}, "BAMSurgeon": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"BAMSurgeon/1.2-GCC-8.3.0-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Tools for adding mutations to existing .bam files, used for testing mutation callers", "homepage": "https://github.com/adamewing/bamsurgeon"}, "BatMeth2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BatMeth2/2.1-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "An Integrated Package for Bisulfite DNA Methylation Data Analysis with Indel-sensitive Mapping.", "homepage": "https://github.com/GuoliangLi-HZAU/BatMeth2"}, "BayeScan": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BayeScan/2.1-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations.", "homepage": "http://cmpg.unibe.ch/software/BayeScan"}, "BayeScEnv": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"BayeScEnv/1.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}, "BayeScEnv/1.1-iccifort-2019.5.281": {"clusters": ["doduo"]}}, "description": "BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detectlocal adaptation.", "homepage": "https://github.com/devillemereuil/bayescenv"}, "BerkeleyGW": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BerkeleyGW/2.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "BerkeleyGW/2.1.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The BerkeleyGW Package is a set of computer codes that calculates the quasiparticle properties and the optical responses of a large variety of materials from bulk periodic crystals to nanostructures such as slabs, wires and molecules.", "homepage": "https://www.berkeleygw.org"}, "BiG-SCAPE": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BiG-SCAPE/1.0.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BiG-SCAPE and CORASON provide a set of tools to explore the diversity of biosynthetic gene clusters (BGCs) across large numbers of genomes, by constructing BGC sequence similarity networks, grouping BGCs into gene cluster families, and exploring gene cluster diversity linked to enzyme phylogenies.", "homepage": "https://bigscape-corason.secondarymetabolites.org/index.html"}, "BinSanity": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BinSanity/0.3.5-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "BinSanity contains a suite a scripts designed to cluster contigs generated frommetagenomic assembly into putative genomes.", "homepage": "https://github.com/edgraham/BinSanity/wiki"}, "Bio-EUtilities": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Bio-EUtilities/1.76-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "base-2.23, Bio::ASN1::EntrezGene-1.73, Bio::DB::EUtilities-1.76, Text::Wrap-2013.0523"}}, "description": "BioPerl low-level API for retrieving and storing data from NCBI eUtils", "homepage": "https://github.com/bioperl/bio-eutilities"}, "Bio-SearchIO-hmmer": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Bio-SearchIO-hmmer/1.7.3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatiblewith both version 2 and version 3 of the HMMER package from http://hmmer.org.", "homepage": "https://metacpan.org/pod/Bio::SearchIO::hmmer3"}, "bmtagger": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"bmtagger/3.101-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Best Match Tagger for removing human reads from metagenomics datasets", "homepage": "ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/"}, "Bonito": {"clusters": ["doduo", "joltik", "skitty"], "versions": {"Bonito/0.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"], "extensions": "alembic-1.4.2, cliff-3.1.0, cmd2-1.0.1, colorama-0.4.3, colorlog-4.1.0, fast-ctc-decode-0.2.3, ont-bonito-0.1.0, ont-fast5-api-3.0.1, optuna-1.1.0, parasail-1.2, prettytable-0.7.2, progressbar33-2.4, pyperclip-1.7.0, python-editor-1.0.4, SQLAlchemy-1.3.15, stevedore-1.32.0, toml-0.10.0, tqdm-4.31.1"}, "Bonito/0.3.8-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "alembic-1.5.8, cliff-3.7.0, cmaes-0.8.2, cmd2-1.5.0, colorama-0.4.4, colorlog-5.0.1, crf-beam-0.0.1a0, fast-ctc-decode-0.3.0, greenlet-1.0.0, importlib_metadata-4.0.1, mappy-2.18, ont-bonito-0.3.8, ont-fast5-api-3.3.0, optuna-2.7.0, prettytable-2.1.0, progressbar33-2.4, pyperclip-1.8.2, python-editor-1.0.4, seqdist-0.0.3, SQLAlchemy-1.4.11, stevedore-3.3.0"}, "Bonito/0.4.0-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "alembic-1.6.4, cliff-3.7.0, cmaes-0.8.2, cmd2-1.5.0, colorama-0.4.4, colorlog-5.0.1, crf-beam-0.0.1a0, fast-ctc-decode-0.3.0, greenlet-1.1.0, importlib_metadata-4.0.1, mappy-2.18, networkx-2.5.1, ont-bonito-0.4.0, optuna-2.7.0, prettytable-2.1.0, pyperclip-1.8.2, python-editor-1.0.4, seqdist-0.0.3, SQLAlchemy-1.4.15, stevedore-3.3.0"}}, "description": "Convolution Basecaller for Oxford Nanopore Reads", "homepage": "https://github.com/nanoporetech/bonito"}, "Bonnie++": {"clusters": ["doduo"], "versions": {"Bonnie++/2.00a-GCC-10.3.0": {"clusters": ["doduo"]}}, "description": "Bonnie++-1.97: Enhanced performance Test of Filesystem I/O", "homepage": "https://www.coker.com.au/bonnie++"}, "Bottleneck": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Bottleneck/1.3.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Fast NumPy array functions written in C", "homepage": "https://kwgoodman.github.io/bottleneck-doc"}, "bpp": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"bpp/4.4.0-GCC-10.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "The aim of this project is to implement a versatile high-performance version of the BPP software.", "homepage": "https://github.com/bpp/bpp"}, "BSMAPz": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"BSMAPz/1.1.1-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Updated and optimized fork of BSMAP.BSMAPz is a short reads mapping program for bisulfite sequencing in DNA methylation study.", "homepage": "https://github.com/zyndagj/BSMAPz"}, "BSseeker2": {"clusters": ["doduo"], "versions": {"BSseeker2/2.1.8-GCC-8.3.0-Python-2.7.16": {"clusters": ["doduo"]}, "BSseeker2/2.1.8-iccifort-2019.5.281-Python-2.7.16": {"clusters": ["doduo"]}}, "description": "BS-Seeker2 is a seamless and versatile pipeline for accurately and fast mapping the bisulfite-treatedreads.", "homepage": "http://pellegrini-legacy.mcdb.ucla.edu/bs_seeker2"}, "buildenv": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"buildenv/default-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "buildenv/default-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "This module sets a group of environment variables for compilers, linkers, maths libraries, etc., that you can use to easily transition between toolchains when building your software. To query the variables being set please use: module show ", "homepage": "None"}, "Calib": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"Calib/0.3.4-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Calib clusters paired-end reads using their barcodes and sequences. Calib is suitable for ampliconsequencing where a molecule is tagged, then PCR amplified with high depth, also known as Unique Molecule Identifier(UMI) sequencing.", "homepage": "https://github.com/vpc-ccg/calib"}, "carputils": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"carputils/20200915-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "carputils-20200915, doxypypy-0.8.8.6, pyDOE-0.3.8"}, "carputils/20210513-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "carputils-20210513, common-0.1.2, doxypypy-0.8.8.6, pyDOE-0.3.8"}}, "description": "carputils is a Python framework for generating and running openCARP examples.", "homepage": "https://git.opencarp.org/openCARP/carputils"}, "CDAT": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"CDAT/8.2.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cdat_info-8.2.1, cdms2-3.1.5, cdtime-3.1.4, cdutil-8.2.1, distarray-2.12.2, dv3d-8.2.1, eofs-1.4.0, genutil-8.2.1, lazy-object-proxy-1.5.2, pycf-1.6.9, thermo-8.1, unidata-2.8, vcs-8.2.1, vcsaddons-8.2.1, wk-8.2.1, xmgrace-2.10"}}, "description": "CDAT is a powerful and complete front-end to a rich set of visual-data exploration and analysis capabilities well suited for data analysis problems.", "homepage": "https://github.com/CDAT/cdat"}, "cdbfasta": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"cdbfasta/0.99-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik"]}, "cdbfasta/0.99-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Fasta file indexing and retrival tool", "homepage": "https://sourceforge.net/projects/cdbfasta"}, "CellRanger": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CellRanger/6.0.1": {"clusters": ["doduo", "donphan", "joltik"]}, "CellRanger/6.1.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "CellRanger/7.0.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "CellRanger/3.1.0": {"clusters": ["donphan", "joltik"]}, "CellRanger/4.0.0": {"clusters": ["donphan", "joltik"]}}, "description": "Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate gene-cell matrices and perform clustering and gene expression analysis.", "homepage": "https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger"}, "Centrifuge": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Centrifuge/1.0.4-beta-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Classifier for metagenomic sequences", "homepage": "https://ccb.jhu.edu/software/centrifuge"}, "CFDEMcoupling": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"CFDEMcoupling/3.8.0-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CFDEMcoupling is an open source CFD-DEM engine. It provides the possibility to couple the DEM engine LIGGGHTS to a CFD framework.", "homepage": "https://www.cfdem.com/cfdemrcoupling-open-source-cfd-dem-framework"}, "CGmapTools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"CGmapTools/0.1.2-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Command-line Toolset for Bisulfite Sequencing Data Analysis", "homepage": "https://cgmaptools.github.io/"}, "chewBBACA": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"chewBBACA/2.5.5-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "chewBBACA-2.5.5, isodate-0.6.0, rdflib-5.0.0, SPARQLWrapper-1.8.5"}}, "description": "chewBBACA stands for \"BSR-Based Allele Calling Algorithm\".chewBBACA is a comprehensive pipeline including a set of functions for thecreation and validation of whole genome and core genome MultiLocus SequenceTyping (wg/cgMLST) schemas, providing an allele calling algorithm based on BlastScore Ratio that can be run in multiprocessor settings and a set of functions tovisualize and validate allele variation in the loci.", "homepage": "https://github.com/B-UMMI/chewBBACA"}, "CIRI-long": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CIRI-long/1.0.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "bwapy-0.1.4, CIRI-long-1.0.2, mappy-2.17"}}, "description": "Circular RNA Identification for Long-Reads Nanopore Sequencing Data", "homepage": "https://github.com/bioinfo-biols/CIRI-long/"}, "CITE-seq-Count": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"CITE-seq-Count/1.4.3-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "CITE-seq-Count-1.4.3, dill-0.3.1.1, multiprocess-0.70.9, pybktree-1.1, pytest-dependency-0.5.1"}}, "description": "A python package that allows to count antibody TAGS from a CITE-seq and/or cell hashing experiment.", "homepage": "https://github.com/Hoohm/CITE-seq-Count"}, "ClustalW2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ClustalW2/2.1-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins.", "homepage": "https://www.ebi.ac.uk/Tools/msa/clustalw2/"}, "CONCOCT": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CONCOCT/1.1.0-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Clustering cONtigs with COverage and ComposiTion (CONCOCT) is aprogram for unsupervised binning of metagenomic contigs by using nucleotidecomposition, coverage data in multiple samples and linkage data from paired endreads.", "homepage": "https://concoct.readthedocs.io"}, "Coreutils": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Coreutils/8.32-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system.", "homepage": "https://www.gnu.org/software/coreutils/"}, "CppUnit": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"CppUnit/1.15.1-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "CppUnit is the C++ port of the famous JUnit framework for unit testing.", "homepage": "https://freedesktop.org/wiki/Software/cppunit/"}, "cpu_features": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"cpu_features/0.6.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A cross-platform C library to retrieve CPU features (such as available instructions) at runtime.", "homepage": "https://github.com/google/cpu_features"}, "CRISPR-DAV": {"clusters": ["doduo", "donphan", "gallade", "joltik"], "versions": {"CRISPR-DAV/2.3.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik"]}}, "description": "CRISPR-DAV is a pipeline to analyzeamplicon-based NGS data of CRISPR clones in a high throughput manner.", "homepage": "https://github.com/pinetree1/crispr-dav/"}, "CRISPResso2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"CRISPResso2/2.1.2-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "CRISPResso2/2.2.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "CRISPResso2 is a software pipeline designed to enable rapid andintuitive interpretation of genome editing experiments.", "homepage": "https://github.com/pinellolab/CRISPResso2/"}, "CRYSTAL17": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"CRYSTAL17/1.0.2-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The CRYSTAL package performs ab initio calculations of the ground state energy, energy gradient, electronic wave function and properties of periodic systems.", "homepage": "http://www.crystal.unito.it"}, "Dalton": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Dalton/2020.0-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Dalton code is a powerful tool for a wide range of molecular properties at different levels of theory. Any published work arising from use of one of the Dalton2016 programs must acknowledge that by a proper reference, https://www.daltonprogram.org/www/citation.html.", "homepage": "https://daltonprogram.org/"}, "deal.II": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"deal.II/9.3.3-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "deal.II is a C++ program library targeted at the computational solution of partial differential equations using adaptive finite elements.", "homepage": "https://www.dealii.org"}, "decona": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"decona/0.1.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads", "homepage": "https://github.com/Saskia-Oosterbroek/decona"}, "Delly": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Delly/0.8.7-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Delly is an integrated structural variant (SV) predictionmethod that can discover, genotype and visualize deletions, tandem duplications,inversions and translocations at single-nucleotide resolution in short-readmassively parallel sequencing data. It uses paired-ends, split-reads andread-depth to sensitively and accurately delineate genomic rearrangementsthroughout the genome.", "homepage": "https://github.com/dellytools/delly/"}, "DFT-D3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DFT-D3/3.2.0-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "DFT-D3/3.2.0-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "DFT-D3 implements a dispersion correction for density functionals, Hartree-Fock and semi-empirical quantum chemical methods.", "homepage": "http://www.thch.uni-bonn.de/tc/index.php?section=downloads&subsection=DFT-D3&lang=english"}, "DIANA": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"DIANA/10.5": {"clusters": ["doduo", "donphan", "joltik"]}, "DIANA/10.4": {"clusters": ["donphan", "joltik"]}}, "description": "DIANA (DIsplacement ANAlyzer) is an extensive multi-purpose finite element software package that is dedicated, but not exclusive, to a wide range of problems arising in Civil engineering including structural, geotechnical, tunnelling, earthquake disciplines and oil & gas engineering.", "homepage": "https://dianafea.com/content/diana"}, "dijitso": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"dijitso/2019.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "dijitso is a Python module for distributed just-in-time shared library building.", "homepage": "https://bitbucket.org/fenics-project/dijitso"}, "DIRAC": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"DIRAC/19.0-intel-2020a-Python-2.7.18-int64": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "DIRAC/19.0-intel-2020a-Python-2.7.18-mpi-int64": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "DIRAC: Program for Atomic and Molecular Direct Iterative Relativistic All-electron Calculations", "homepage": "http://www.diracprogram.org"}, "DL_POLY_Classic": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"DL_POLY_Classic/1.10-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "DL_POLY_Classic/1.10-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "DL_POLY Classic is a general purpose (parallel and serial)molecular dynamics simulation package.", "homepage": "https://gitlab.com/DL_POLY_Classic/dl_poly"}, "dlib": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"dlib/19.22-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "dlib/19.22-foss-2021a-CUDA-11.3.1": {"clusters": ["joltik"]}}, "description": "Dlib is a modern C++ toolkit containing machine learningalgorithms and tools for creating complex software in C++ to solve real worldproblems. It is used in both industry and academia in a wide range of domainsincluding robotics, embedded devices, mobile phones, and large high performancecomputing environments.", "homepage": "https://github.com/davisking/dlib"}, "DMCfun": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"DMCfun/1.3.0-foss-2019b-R-3.6.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "DEoptim-2.2-5, DMCfun-1.3.0, dplyr-1.0.5, glue-1.4.2, lifecycle-1.0.0, optextras-2019-12.4, optimr-2019-12.16, Rcgmin-2013-2.21, rlang-0.4.10, Rvmmin-2018-4.17, setRNG-2013.9-1, tidyselect-1.1.0, vctrs-0.3.6"}}, "description": "Diffusion Model of Conflict (DMC) in Reaction Time Tasks", "homepage": "https://cran.r-project.org/web/packages/DMCfun"}, "DOLFIN": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"DOLFIN/2019.1.0.post0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE (Problem Solving Environment) for ordinary and partial differential equations.", "homepage": "https://bitbucket.org/fenics-project/dolfin"}, "DROP": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"DROP/1.0.3-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "about-5.2, click-log-0.3.2, DROP-1.0.3, graphviz-0.16, pandoc-1.0.2, ply-3.11, wbuild-1.8.0"}, "DROP/1.1.0-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "about-5.2, click-log-0.3.2, DROP-1.1.0, graphviz-0.17, pandoc-1.1.0, plumbum-1.7.0, ply-3.11, wbuild-1.8.0"}}, "description": "Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders", "homepage": "https://gagneurlab-drop.readthedocs.io"}, "Dsuite": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Dsuite/20210718-intel-compilers-2021.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Fast calculation of the ABBA-BABA statistics across many populations/species", "homepage": "https://github.com/millanek/Dsuite"}, "dtcwt": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"dtcwt/0.12.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Dual-Tree Complex Wavelet Transform library for Python", "homepage": "https://github.com/rjw57/dtcwt"}, "Elk": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Elk/7.0.12-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "An all-electron full-potential linearisedaugmented-plane wave (FP-LAPW) code with many advanced features. Writtenoriginally at Karl-Franzens-Universit\u00e4t Graz as a milestone of theEXCITING EU Research and Training Network, the code is designed to be assimple as possible so that new developments in the field of densityfunctional theory (DFT) can be added quickly and reliably.", "homepage": "http://elk.sourceforge.net/"}, "elprep": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"elprep/5.1.1": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "elPrep is a high-performance tool for analyzing .sam/.bam files (up to and including variant calling) in sequencing pipelines.", "homepage": "https://github.com/ExaScience/elprep"}, "ESMPy": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ESMPy/8.0.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ESMPy/8.0.1-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ESMPy/8.0.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Earth System Modeling Framework (ESMF) Python Interface", "homepage": "https://earthsystemmodeling.org/esmpy"}, "eSpeak-NG": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"eSpeak-NG/1.50-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The eSpeak NG is a compact open source software text-to-speech synthesizerfor Linux, Windows, Android and other operating systems.It supports more than 100 languages and accents.It is based on the eSpeak engine created by Jonathan Duddington.", "homepage": "https://github.com/espeak-ng/espeak-ng"}, "Excel-Writer-XLSX": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Excel-Writer-XLSX/1.09-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Excel::Writer::XLSX module can be used to create an Excel file in the 2007+ XLSX format.Multiple worksheets can be added to a workbook and formatting can be applied to cells. Text, numbers, and formulascan be written to the cells.", "homepage": "https://metacpan.org/pod/Excel::Writer::XLSX"}, "FabIO": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FabIO/0.11.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FabIO is an I/O library for images produced by 2D X-ray detectors and written in Python. FabIO support images detectors from a dozen of companies (including Mar, Dectris, ADSC, Hamamatsu, Oxford, ...), for a total of 20 different file formats (like CBF, EDF, TIFF, ...) and offers an unified interface to their headers (as a python dictionary) and datasets (as a numpy ndarray of integers or floats).", "homepage": "http://www.silx.org"}, "FALCON": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FALCON/1.8.8-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "FALCON-1.8.8, networkx-1.10, pypeFLOW-20170504"}}, "description": "Falcon: a set of tools for fast aligning long reads for consensus and assembly", "homepage": "https://github.com/PacificBiosciences/FALCON"}, "FastViromeExplorer": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FastViromeExplorer/20180422-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Identify the viruses/phages and their abundance in the viral metagenomics data.", "homepage": "https://code.vt.edu/saima5/FastViromeExplorer"}, "FEniCS": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"FEniCS/2019.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "FEniCS is a computing platform for solving partial differential equations (PDEs).", "homepage": "https://fenicsproject.org/"}, "fermi-lite": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"fermi-lite/20190320-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Standalone C library for assembling Illumina short reads in small regions.", "homepage": "https://github.com/lh3/fermi-lite"}, "festival": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"festival/2.5.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "University of Edinburgh's Festival Speech Synthesis Systems is a free softwaremulti-lingual speech synthesis workbench that runs on multiple-platformsoffering black box text to speech, as well as an open architecture forresearch in speech synthesis.It designed as a component of large speech technology systems.", "homepage": "['http://festvox.org/festival/']"}, "fetchMG": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"fetchMG/1.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The program \u201cfetchMG\u201d was written to extract the 40 MGs from genomes and metagenomes in an easy and accurate manner.", "homepage": "https://vm-lux.embl.de/~mende/fetchMG/about.html"}, "FFC": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FFC/2019.1.0.post0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The FEniCS Form Compiler (FFC) is a compiler for finite element variational forms.", "homepage": "https://bitbucket.org/fenics-project/ffc"}, "FIAT": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FIAT/2019.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The FInite element Automatic Tabulator (FIAT) supportsgeneration of arbitrary order instances of the Lagrange elements onlines, triangles, and tetrahedra. It is also capable of generatingarbitrary order instances of Jacobi-type quadrature rules on the sameelement shapes.", "homepage": "https://bitbucket.org/fenics-project/fiat"}, "Filtlong": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Filtlong/0.2.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter", "homepage": "https://github.com/rrwick/Filtlong"}, "FLAIR": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"FLAIR/1.5-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "kerneltree-0.0.5, ncls-0.0.53"}, "FLAIR/1.5.1-20200630-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "kerneltree-0.0.5, ncls-0.0.53"}}, "description": "FLAIR (Full-Length Alternative Isoform analysis of RNA) for the correction, isoform definition, and alternative splicing analysis of noisy reads. FLAIR has primarily been used for nanopore cDNA, native RNA, and PacBio sequencing reads.", "homepage": "https://github.com/BrooksLabUCSC/flair"}, "FLTK": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FLTK/1.3.5-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FLTK/1.3.5-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.", "homepage": "https://www.fltk.org"}, "FMM3D": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"FMM3D/20211018-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Flatiron Institute Fast Multipole Libraries: a set of libraries to compute N-bodyinteractions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on amulti-core shared-memory machine.", "homepage": "https://fmm3d.readthedocs.io"}, "FMPy": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FMPy/0.3.2-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "dash-2.0.0, dash-bootstrap-components-1.0.0, dash-core-components-2.0.0, dash-html-components-2.0.0, dash-table-5.0.0, Flask-Compress-1.10.1, FMPy-0.3.2, idna-2.8, lark-parser-0.12.0, msgpack-1.0.2"}}, "description": "FMPy is a free Python library to simulate Functional Mock-up Units (FMUs).", "homepage": "https://github.com/CATIA-Systems/FMPy"}, "freebayes": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"freebayes/1.3.5-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Bayesian haplotype-based genetic polymorphism discovery and genotyping.", "homepage": "https://github.com/freebayes/freebayes"}, "FreeFEM": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FreeFEM/4.5-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "FreeFEM offers a fast interpolation algorithm and a language for the manipulation of data on multiple meshes.", "homepage": "https://freefem.org"}, "freetype-py": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"freetype-py/2.2.0-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Python binding for the freetype library", "homepage": "https://github.com/rougier/freetype-py"}, "FuSeq": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FuSeq/1.1.2-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "FuSeq is a novel method to discover fusion genes from paired-end RNA sequencing data.", "homepage": "https://github.com/nghiavtr/FuSeq"}, "FusionCatcher": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"FusionCatcher/1.20-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "FusionCatcher/1.30-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "FusionCatcher searches for novel/known somatic fusion genes, translocations,and chimeras in RNA-seq data (paired-end or single-end reads from Illumina NGSplatforms like Solexa/HiSeq/NextSeq/MiSeq/MiniSeq) from diseased samples.", "homepage": "https://github.com/ndaniel/fusioncatcher"}, "g2clib": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"g2clib/1.6.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "g2clib/1.6.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Library contains GRIB2 encoder/decoder ('C' version).", "homepage": "https://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/"}, "g2lib": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"g2lib/3.1.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Library contains GRIB2 encoder/decoder and search/indexing routines.", "homepage": "https://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/"}, "g2log": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"g2log/1.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "g2log, efficient asynchronous logger using C++11", "homepage": "https://sites.google.com/site/kjellhedstrom2//g2log-efficient-background-io-processign-with-c11"}, "garnett": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"garnett/0.1.20-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "garnett-0.1.20, rly-1.6.2"}}, "description": "Garnett is a software package that faciliates automated cell type classification from single-cellexpression data.", "homepage": "https://cole-trapnell-lab.github.io/garnett"}, "gawk": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gawk/5.1.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The awk utility interprets a special-purpose programming language that makes it possible to handlesimple data-reformatting jobs with just a few lines of code.", "homepage": "https://www.gnu.org/software/gawk"}, "gcloud": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"gcloud/382.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Libraries and tools for interacting with Google Cloud products and services.", "homepage": "https://cloud.google.com/sdk"}, "GDB": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GDB/9.1-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The GNU Project Debugger", "homepage": "https://www.gnu.org/software/gdb/gdb.html"}, "gdbm": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"gdbm/1.18.1-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GNU dbm (or GDBM, for short) is a library of database functions that use extensible hashing and work similar to the standard UNIX dbm. These routines are provided to a programmer needing to create and manipulate a hashed database.", "homepage": "https://www.gnu.org.ua/software/gdbm/"}, "GEGL": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GEGL/0.4.30-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GEGL (Generic Graphics Library) is a data flow based image processing framework, providing floating point processing and non-destructive image processing capabilities to GNU Image Manipulation Program (GIMP) and other projects.", "homepage": "https://www.gegl.org"}, "gengetopt": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"gengetopt/2.23-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "gengetopt/2.23-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Gengetopt is a tool to write command line option parsing code for C programs.", "homepage": "https://www.gnu.org/software/gengetopt/gengetopt.html"}, "gexiv2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"gexiv2/0.12.2-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "gexiv2 is a GObject wrapper around the Exiv2 photo metadata library.", "homepage": "https://wiki.gnome.org/Projects/gexiv2"}, "GIMP": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"GIMP/2.10.24-GCC-10.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "GIMP is a cross-platform image editor available for GNU/Linux, OS X, Windows and more operating systems.", "homepage": "https://www.gimp.org"}, "glibc": {"clusters": ["doduo", "skitty"], "versions": {"glibc/2.30-GCCcore-8.3.0": {"clusters": ["doduo", "skitty"]}}, "description": "The GNU C Library project provides the core libraries for the GNU system and GNU/Linux systems, as well as many other systems that use Linux as the kernel.", "homepage": "https://www.gnu.org/software/libc/"}, "GLibmm": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GLibmm/2.49.7-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GLibmm/2.66.4-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "C++ bindings for Glib", "homepage": "https://www.gtk.org/"}, "GlimmerHMM": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"GlimmerHMM/3.0.4c-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "GlimmerHMM/3.0.4c-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model. Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models.", "homepage": "https://ccb.jhu.edu/software/glimmerhmm"}, "gmsh": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"gmsh/4.5.6-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "gmsh/4.5.6-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.", "homepage": "https://gmsh.info"}, "gobff": {"clusters": ["doduo"], "versions": {"gobff/2020b": {"clusters": ["doduo"]}}, "description": "GCC and GFortran based compiler toolchain with OpenMPI, BLIS, libFLAME, ScaLAPACK and FFTW.", "homepage": "(none)"}, "GPyOpt": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GPyOpt/1.2.6-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "GPy-1.9.9, GPyOpt-1.2.6, paramz-0.9.5"}}, "description": "GPyOpt is a Python open-source library for Bayesian Optimization", "homepage": "https://sheffieldml.github.io/GPyOpt"}, "GraphicsMagick": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GraphicsMagick/1.3.34-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GraphicsMagick is the swiss army knife of image processing.", "homepage": "https://www.graphicsmagick.org/"}, "GraphMap2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GraphMap2/0.6.4-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A highly sensitive and accurate mapper for long, error-prone reads", "homepage": "https://github.com/lbcb-sci/graphmap2"}, "GroIMP": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"GroIMP/1.5-Java-1.8": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GroIMP (Growth Grammar-related Interactive Modelling Platform) is a 3D-modelling platform.", "homepage": "http://www.grogra.de/software/groimp"}, "Hadoop": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Hadoop/2.10.0-GCCcore-8.3.0-native": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Hadoop/2.10.0-GCCcore-10.2.0-native": {"clusters": ["doduo"]}, "Hadoop/2.10.0-GCCcore-10.2.0-native-Java-1.8": {"clusters": ["donphan", "joltik"]}}, "description": "Hadoop MapReduce by Cloudera", "homepage": "https://archive.cloudera.com/cdh5/cdh/5/"}, "HAL": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HAL/2.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "addict-2.2.1, blessed-1.18.1, dill-0.3.4, docker-4.3.1, enlighten-1.10.1, newick-1.3.0, prefixed-0.3.2, toil-5.3.0, websocket-client-1.1.0"}}, "description": "HAL is a structure to efficiently store and index multiple genome alignmentsand ancestral reconstructions. HAL is a graph-based representation whichprovides several advantages over matrix/block-based formats such as MAF, such asimproved scalability and the ability to perform queries with respect to anarbitrary reference or subtree.This package includes the HAL API and several analysis and conversion toolswhich are described below. HAL files are presently stored in either HDF5 or mmapformat, but we note that the tools and most of the API are format-independent,so other databases could be implemented in the future.", "homepage": "https://github.com/ComparativeGenomicsToolkit/hal"}, "harmony": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"harmony/0.1.0-20210528-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "harmony/1.0.0-20200224-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets.", "homepage": "https://portals.broadinstitute.org/harmony"}, "HDDM": {"clusters": ["doduo", "skitty"], "versions": {"HDDM/0.7.5-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "skitty"], "extensions": "HDDM-0.7.5, kabuki-0.6.2, patsy-0.5.1, pymc-2.3.7"}, "HDDM/0.7.5-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"], "extensions": "HDDM-0.7.5, kabuki-0.6.2, patsy-0.5.1, pymc-2.3.7"}}, "description": "HDDM is a Python toolbox for hierarchical Bayesian parameter estimation of the Drift Diffusion Model (via PyMC).", "homepage": "http://ski.clps.brown.edu/hddm_docs"}, "hierfstat": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"hierfstat/0.5-7-foss-2020a-R-4.0.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "adegenet-2.1.3, gaston-1.5.6, hierfstat-0.5-7, RcppParallel-5.0.2, spdep-1.1-5"}}, "description": "Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels inthe hierarchy.", "homepage": "https://cran.r-project.org/package=hierfstat"}, "HMMER2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"HMMER2/2.3.2-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "HMMER2/2.3.2-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "HMMER2/2.3.2-GCC-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments.", "homepage": "http://hmmer.org"}, "horton": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"horton/2.1.1-intel-2020a-Python-2.7.18": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "HORTON is a Helpful Open-source Research TOol for N-fermion systems, written primarily in the Python programming language. (HORTON is named after the helpful pachyderm, not the Canadian caffeine supply store.) The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost. Although HORTON is primarily designed to be a quantum-chemistry program, it can perform computations involving model Hamiltonians, and could be extended for computations in nuclear physics.", "homepage": "https://theochem.github.io/horton"}, "hyperopt": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"hyperopt/0.2.4-intel-2019b-Python-3.7.4-Java-1.8": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "cloudpickle-1.4.1, hyperopt-0.2.4, lightgbm-2.3.1, pymongo-3.10.1, tqdm-4.46.0"}, "hyperopt/0.2.5-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "cloudpickle-1.6.0, hyperopt-0.2.5, lightgbm-3.2.0, py4j-0.10.9.2, pymongo-3.11.3"}}, "description": "Distributed Asynchronous Hyperparameter Optimization in Python", "homepage": "https://github.com/hyperopt/hyperopt"}, "HyPo": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"HyPo/1.0.3-GCC-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies", "homepage": "https://github.com/kensung-lab/hypo"}, "ichorCNA": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ichorCNA/0.3.2-20191219-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ichorCNA is a tool for estimating the fraction of tumor in cell-free DNA from ultra-low-pass wholegenome sequencing", "homepage": "https://github.com/broadinstitute/ichorCNA/wiki"}, "idemux": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"idemux/0.1.6-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "idemux-0.1.6, pytest-runner-5.3.0"}}, "description": "idemux - inline barcode demultiplexingIdemux is a command line tool designed to demultiplex paired-end FASTQ files from QuantSeq-Pool.", "homepage": "https://github.com/Lexogen-Tools/idemux"}, "IGMPlot": {"clusters": ["doduo"], "versions": {"IGMPlot/2.4.2-GCC-8.3.0": {"clusters": ["doduo"]}, "IGMPlot/2.4.2-iccifort-2019.5.281": {"clusters": ["doduo"]}}, "description": "IGMPlot is a free open-source program developed to identify molecular interactions and prepare data to build 2D and 3D representations of them in the molecular environment.", "homepage": "http://igmplot.univ-reims.fr"}, "IGV": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"IGV/2.8.0-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "IGV/2.9.4-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "This package contains command line utilities for preprocessing, computing feature count density (coverage), sorting, and indexing data files.", "homepage": "https://www.broadinstitute.org/software/igv/"}, "iibff": {"clusters": ["doduo"], "versions": {"iibff/2020b": {"clusters": ["doduo"]}}, "description": "GCC and GFortran based compiler toolchain with OpenMPI, BLIS, libFLAME, ScaLAPACK and FFTW.", "homepage": "(none)"}, "IOR": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"IOR/3.2.1-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The IOR software is used for benchmarking parallel file systems using POSIX, MPIIO, or HDF5 interfaces.", "homepage": "https://github.com/IOR-LANL/ior"}, "IRkernel": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"IRkernel/1.1-foss-2019b-R-3.6.2-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "IRdisplay-0.7.0, IRkernel-1.1, pbdZMQ-0.3-3, repr-1.1.0"}, "IRkernel/1.2-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "IRdisplay-1.0, IRkernel-1.2, pbdZMQ-0.3-5, repr-1.1.3"}}, "description": "The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network.", "homepage": "https://irkernel.github.io"}, "isoCirc": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"isoCirc/1.0.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argcomplete-1.12.3, argh-0.26.2, crlibm-1.0.3, gffutils-0.10.1, isoCirc-1.0.4, mappy-2.20, pyinterval-1.2.0"}}, "description": "isoCirc: computational pipeline to identify high-confidenceBSJs and full-length circRNA isoforms from isoCirc long-read data", "homepage": "https://github.com/Xinglab/isoCirc"}, "jobcli": {"clusters": ["doduo"], "versions": {"jobcli/0.0": {"clusters": ["doduo"]}}, "description": "Resource manager agnostic tool for submitting & managing jobs on HPC clusters", "homepage": "https://github.com/hpcugent/jobcli"}, "joypy": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"joypy/0.2.2-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "joypy/0.2.4-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Joyplots in Python with matplotlib & pandas", "homepage": "https://github.com/sbebo/joypy"}, "JSON-GLib": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"JSON-GLib/1.6.2-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "JSON-GLib implements a full JSON parser and generator using GLib and GObject, and integrates JSON with GLib data types.", "homepage": "https://wiki.gnome.org/Projects/JsonGlib"}, "Kaleido": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Kaleido/0.1.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Fast static image export for web-based visualization libraries with zero dependencies", "homepage": "https://github.com/plotly/Kaleido"}, "kma": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"kma/1.2.22-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.", "homepage": "https://bitbucket.org/genomicepidemiology/kma"}, "Kraken": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Kraken/1.1.1-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Kraken/1.1.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.", "homepage": "https://ccb.jhu.edu/software/kraken/"}, "Kraken2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Kraken2/2.0.9-beta-gompi-2020a-Perl-5.30.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Kraken2/2.1.2-gompi-2021a": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.", "homepage": "https://github.com/DerrickWood/kraken2/wiki"}, "lancet": {"clusters": ["doduo"], "versions": {"lancet/1.1.0-iccifort-2019.5.281": {"clusters": ["doduo"]}}, "description": "Lancet is a somatic variant caller (SNVs and indels) for short read data.", "homepage": "https://github.com/nygenome/lancet"}, "LAST": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LAST/1045-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "LAST/1179-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "LAST finds similar regions between sequences.", "homepage": "http://last.cbrc.jp/"}, "lavaan": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"lavaan/0.6-9-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Fit a variety of latent variable models, including confirmatory factor analysis, structural equation modeling and latent growth curve models.", "homepage": "https://cran.r-project.org/web/packages/lavaan"}, "legacy-job-wrappers": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"legacy-job-wrappers/0.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Legacy wrappers for job commands (qsub, qstat, ...)"}, "libBigWig": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"libBigWig/0.4.4-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A C library for handling bigWig files", "homepage": "https://github.com/dpryan79/libBigWig"}, "libcdms": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"libcdms/3.1.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Climate Data Management System Library.", "homepage": "https://github.com/CDAT/libcdms/"}, "libdap": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"libdap/3.20.6-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libdap/3.20.7-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A C++ SDK which contains an implementation of DAP 2.0 and DAP4.0. This includes both Client- and Server-side support classes.", "homepage": "https://www.opendap.org/software/libdap"}, "libdrs": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"libdrs/3.1.2-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PCMDI's old DRS format implementation", "homepage": "https://github.com/CDAT/libdrs/"}, "libFLAME": {"clusters": ["doduo"], "versions": {"libFLAME/5.2.0-GCCcore-10.2.0": {"clusters": ["doduo"]}}, "description": "libFLAME is a portable library for dense matrix computations,providing much of the functionality present in LAPACK.", "homepage": "https://developer.amd.com/amd-cpu-libraries/blas-library/#libflame"}, "LiBis": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"LiBis/20200428-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "An ultrasensitive alignment method for low input bisulfite sequencing", "homepage": "https://github.com/Dangertrip/LiBis"}, "libmatheval": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"libmatheval/1.1.11-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libmatheval/1.1.11-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.", "homepage": "https://www.gnu.org/software/libmatheval/"}, "libmypaint": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"libmypaint/1.6.1-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "libmypaint, a.k.a. \"brushlib\", is a library for making brushstrokes which is used by MyPaint and other projects", "homepage": "https://github.com/mypaint/libmypaint"}, "libRmath": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"libRmath/4.1.0-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The routines supporting the distribution and special functions in R and a few others are declared in C header file Rmath.h. These can be compiled into a standalone library for linking to other applications.", "homepage": "https://cran.r-project.org/doc/manuals/r-release/R-admin.html#The-standalone-Rmath-library"}, "librsvg": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"librsvg/2.51.2-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Librsvg is a library to render SVG files using cairo.", "homepage": "https://wiki.gnome.org/Projects/LibRsvg"}, "libsigc++": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"libsigc++/2.10.2-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libsigc++/2.10.8-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The libsigc++ package implements a typesafe callback system for standard C++.", "homepage": "https://libsigcplusplus.github.io/libsigcplusplus/"}, "libxml++": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"libxml++/2.40.1-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "libxml++/2.42.1-GCC-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "libxml++ is a C++ wrapper for the libxml XML parser library.", "homepage": "http://libxmlplusplus.sourceforge.net"}, "LMfit": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"LMfit/1.0.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "asteval-0.9.18, lmfit-1.0.0, uncertainties-3.1.2"}}, "description": "Lmfit provides a high-level interface to non-linear optimization and curve fitting problems for Python", "homepage": "https://lmfit.github.io/lmfit-py"}, "LncLOOM": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LncLOOM/2.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "amply-0.1.4, LncLOOM-2.0, PuLP-2.4"}}, "description": "LncLOOM is a graph-based framework that uses integerprogramming to identify combinations of short motifs that are deeply conservedin rapidly evolving sequences.", "homepage": "https://github.com/lncLOOM/lncLOOMv2/"}, "longread_umi": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"longread_umi/0.3.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A collection of scripts for processing longread UMI data.", "homepage": "https://github.com/SorenKarst/longread_umi"}, "LPeg": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"LPeg/1.0.2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "LPeg is a new pattern-matching library for Lua, based on Parsing Expression Grammars (PEGs).", "homepage": "http://www.inf.puc-rio.br/~roberto/lpeg/"}, "LPJmL": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LPJmL/4.0.003-iimpi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Dynamic global vegetation model with managed land and river routing", "homepage": "https://github.com/PIK-LPJmL/LPJmL"}, "LtrDetector": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"LtrDetector/1.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A modern tool-suite for detectinglong terminal repeat retrotransposons de-novo onthe genomic scale", "homepage": "https://github.com/TulsaBioinformaticsToolsmith/LtrDetector"}, "LUMPY": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"LUMPY/0.3.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A probabilistic framework for structural variant discovery.", "homepage": "https://github.com/arq5x/lumpy-sv"}, "M1QN3": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"M1QN3/3.3-GCC-10.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "A solver of large-scale unconstrained minimization problems", "homepage": "https://who.rocq.inria.fr/Jean-Charles.Gilbert/modulopt/optimization-routines/m1qn3/m1qn3.html"}, "makedepend": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"makedepend/1.0.6-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "makedepend/1.0.6-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies.", "homepage": "https://linux.die.net/man/1/makedepend"}, "manta": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"manta/1.6.0-gompi-2020a-Python-2.7.18": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads.It is optimized for analysis of germline variation in small sets of individuals andsomatic variation in tumor/normal sample pairs. Manta discovers, assembles andscores large-scale SVs, medium-sized indels and large insertions within asingle efficient workflow.", "homepage": "https://github.com/Illumina/manta"}, "MariaDB-connector-c": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MariaDB-connector-c/2.3.7-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "MariaDB-connector-c/3.1.7-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MariaDB Connector/C is used to connect applications developed in C/C++ to MariaDB and MySQL databases.", "homepage": "https://downloads.mariadb.org/connector-c/"}, "MARS": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MARS/20191101-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "improving Multiple circular sequence Alignment using Refined Sequences", "homepage": "https://github.com/lorrainea/MARS"}, "MATIO": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MATIO/1.5.17-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "matio is an C library for reading and writing Matlab MAT files.", "homepage": "https://sourceforge.net/projects/matio/"}, "mauveAligner": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"mauveAligner/4736-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Mauve is a system for constructing multiple genome alignments in the presenceof large-scale evolutionary events such as rearrangement and inversion.Multiple genome alignments provide a basis for research into comparativegenomics and the study of genome-wide evolutionary dynamics.This version was built without Graphical User Interface.", "homepage": "https://darlinglab.org/mauve/mauve.html"}, "maze": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"maze/20170124-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "In a similar manner to dot plots, maze highlights localsequence similarity between two DNA sequences. In particular, maximal exactsubstring matches are computed with MUMmer3 and visualised.", "homepage": "https://github.com/dellytools/maze"}, "MBROLA": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MBROLA/3.3-GCCcore-9.3.0-voices-20200330": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MBROLA is a speech synthesizer based on the concatenation of diphones.It takes a list of phonemes as input, together with prosodic information(duration of phonemes and a piecewise linear description of pitch),and produces speech samples on 16 bits (linear),at the sampling frequency of the diphone database.MBROLA voices project provides list of MBROLA speech synthesizer voices.It is intended to provide easier collaboration andautomatic updates for individual users and packagers.", "homepage": "['https://github.com/numediart/MBROLA', 'https://github.com/numediart/MBROLA-voices']"}, "medImgProc": {"clusters": ["doduo", "skitty"], "versions": {"medImgProc/2.5.7-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"], "extensions": "imageio-2.8.0, medImgProc-2.5.7, phasepack-1.5, PyWavelets-1.1.1, trimesh-3.6.15"}}, "description": "Motion correction, explicit spatio-temporal regularization of motion tracking, random specklesenhancement, and segmentation.", "homepage": "https://github.com/WeiXuanChan/motionSegmentation"}, "MEGA": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"MEGA/11.0.10": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "MEGA-CC (Molecular Evolutionary Genetics Analysis Computational Core) is an integrated suite of tools for statistics-based comparative analysis of molecular sequence data based on evolutionary principles.", "homepage": "https://www.megasoftware.net/"}, "MEM": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"MEM/20191023-foss-2019b": {"clusters": ["doduo", "donphan", "joltik"]}, "MEM/20191023-foss-2020a-R-4.0.0": {"clusters": ["donphan", "joltik"]}}, "description": "Marker Enrichment Modeling (MEM) is a tool designed to calculate enrichment scores.", "homepage": "https://github.com/cytolab/mem"}, "meshalyzer": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"meshalyzer/2.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "meshalyzer/2.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "meshalyzer/20200308-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Graphical program for display time dependent data on 3D finite elment meshes", "homepage": "https://git.opencarp.org/openCARP/meshalyzer"}, "meshtool": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"meshtool/16-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "meshtool/16-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Meshtool is a comand-line tool written in C++. It is designed to apply various manipulations tovolumetric meshes.", "homepage": "https://bitbucket.org/aneic/meshtool"}, "Mesquite": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Mesquite/2.3.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Mesh-Quality Improvement Library", "homepage": "https://software.sandia.gov/mesquite/"}, "MESS": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MESS/0.1.6-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Master Equation System Solver (MESS)", "homepage": "https://github.com/PACChem/MESS"}, "metaerg": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"metaerg/1.2.3-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MetaErg is a stand-alone and fully automated metagenomic and metaproteomic data annotation pipeline.", "homepage": "https://github.com/xiaoli-dong/metaerg"}, "Metagenome-Atlas": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Metagenome-Atlas/2.4.3-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "arrow-0.17.0, binaryornot-0.4.4, click-7.1.2, colorlover-0.3.0, cookiecutter-1.7.2, cufflinks-0.17.3, jinja2-time-0.2.0, Metagenome-Atlas-2.4.3, plotly-4.11.0, poyo-0.5.0, python-slugify-4.0.1, retrying-1.3.3, ruamel.yaml-0.16.12, ruamel.yaml.clib-0.2.2, text-unidecode-1.3"}}, "description": "Metagenome-atlas is a easy-to-use metagenomic pipeline based on snakemake. It handles all steps from QC, Assembly, Binning, to Annotation.", "homepage": "https://github.com/metagenome-atlas/atlas"}, "metaWRAP": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"metaWRAP/1.3-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MetaWRAP aims to be an easy-to-use metagenomic wrapper suitethat accomplishes the core tasks of metagenomic analysis from start to finish:read quality control, assembly, visualization, taxonomic profiling, extractingdraft genomes (binning), and functional annotation.", "homepage": "https://github.com/bxlab/metaWRAP"}, "MethylDackel": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"MethylDackel/0.5.0-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "A (mostly) universal methylation extractor for BS-seq experiments.", "homepage": "https://github.com/dpryan79/MethylDackel"}, "mhcnuggets": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mhcnuggets/2.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "mhcnuggets/2.3-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "MHCnuggets: Neoantigen peptide MHC binding prediction for class I and II.", "homepage": "https://github.com/KarchinLab/mhcnuggets"}, "MicrobeAnnotator": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MicrobeAnnotator/2.0.5-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "fasta-reader-1.0.0, gff-io-0.0.2, hmmer-0.1.0, importlib_resources-5.4.0, MicrobeAnnotator-2.0.5, pooch-1.5.2, wget-3.2, xopen-1.2.1"}}, "description": "Easy-to-use pipeline for the comprehensive metabolic annotation of microbial genomes.", "homepage": "https://github.com/cruizperez/MicrobeAnnotator"}, "microctools": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"microctools/0.1.0-20201209-foss-2020b-R-4.0.4": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Various worker functions for microclimc package", "homepage": "https://github.com/ilyamaclean/microctools"}, "MinCED": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MinCED/0.4.2-GCCcore-8.3.0-Java-11": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Mining CRISPRs in Environmental Datasets", "homepage": "https://github.com/ctSkennerton/minced"}, "minibar": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"minibar/20200326-iccifort-2019.5.281-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik"]}, "minibar/20200326-iccifort-2020.1.217-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Dual barcode and primer demultiplexing for MinION sequenced reads", "homepage": "https://github.com/calacademy-research/minibar"}, "misha": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"misha/4.0.10-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The misha package is intended to help users to efficiently analyze genomic data achieved from various experiments.", "homepage": "https://github.com/tanaylab/misha"}, "mm-common": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"mm-common/1.0.4-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The mm-common module provides the build infrastructure and utilities shared among the GNOME C++ binding libraries.", "homepage": "https://gitlab.gnome.org/GNOME/mm-common"}, "MOABS": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MOABS/1.3.9.6-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MOABS: MOdel based Analysis of Bisulfite Sequencing data", "homepage": "https://github.com/sunnyisgalaxy/moabs"}, "Molden": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Molden/6.8-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Molden is a package for displaying Molecular Density from the Ab Initio packages GAMESS-UK, GAMESS-US and GAUSSIAN and the Semi-Empirical packages Mopac/Ampac", "homepage": "https://www3.cmbi.umcn.nl/molden/"}, "mongolite": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"mongolite/2.3.0-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "mongolite/2.3.0-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "mongolite/2.3.0-foss-2020b-R-4.0.4": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'. Includes support for aggregation, indexing, map-reduce, streaming, encryption, enterprise authentication, and GridFS. The online user manual provides an overview of the available methods in the package: .", "homepage": "https://cran.r-project.org/web/packages/mongolite"}, "monitor": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"monitor/1.1.2": {"clusters": ["doduo", "donphan", "joltik"], "extensions": "Data::Dumper-2.183, Getopt::Long-2.52, IO-1.48, List::Util-1.60, Set::Scalar-1.29"}}, "description": "monitor logs cpu and memory usage of a running application", "homepage": "https://github.com/gjbex/monitor"}, "Mono": {"clusters": ["doduo", "skitty"], "versions": {"Mono/6.8.0.105-GCCcore-8.3.0": {"clusters": ["doduo", "skitty"]}}, "description": "An open source, cross-platform, implementation of C# and the CLR that is binary compatible with Microsoft.NET.", "homepage": "https://www.mono-project.com/"}, "motionSegmentation": {"clusters": ["doduo", "skitty"], "versions": {"motionSegmentation/2.7.9-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"], "extensions": "autoD-3.9.2, imageio-2.8.0, motionSegmentation-2.7.9, trimesh-3.6.15"}}, "description": "Motion correction, explicit spatio-temporal regularization of motion tracking, random specklesenhancement, and segmentation.", "homepage": "https://github.com/WeiXuanChan/motionSegmentation"}, "MrBayes": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"MrBayes/3.2.6-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "MrBayes/3.2.7-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models.", "homepage": "https://nbisweden.github.io/MrBayes/"}, "Multiwfn": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Multiwfn/3.6-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Multiwfn is an extremely powerful program for realizingi electronic wavefunction analysis, which is a key ingredient of quantum chemistry. Multiwfn is free, open-source, high-efficient, very user-friendly and flexible, it supports almost all of the most important wavefunction analysis methods.", "homepage": "http://sobereva.com/multiwfn/"}, "MyCC": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"MyCC/2017-03-01-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "MyCC is built and delivered as a tailored solution for metagenomics sequencesclassfication.", "homepage": "https://sourceforge.net/projects/sb2nhri/files/MyCC/"}, "Myokit": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Myokit/1.32.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "Myokit/1.32.0-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "Myokit is an open-source Python-based toolkit that facilitates modeling and simulation of cardiaccellular electrophysiology.", "homepage": "http://myokit.org"}, "NanoComp": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"NanoComp/1.10.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "NanoComp/1.13.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Comparing runs of Oxford Nanopore sequencing data and alignments", "homepage": "https://github.com/wdecoster/NanoComp"}, "nanocompore": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"nanocompore/1.0.0rc3-2-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bedparse-0.2.3, nanocompore-1.0.0rc3-2, pyfaidx-0.5.9.1"}}, "description": "Nanocompore identifies differences in ONT nanopore sequencing raw signal corresponding to RNA modifications by comparing 2 samples", "homepage": "https://nanocompore.rna.rocks/"}, "nanofilt": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"nanofilt/2.6.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "nanofilt/2.6.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Filtering and trimming of long read sequencing data.", "homepage": "https://github.com/wdecoster/nanofilt"}, "NanoFilt": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"NanoFilt/2.6.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Filtering and trimming of Oxford Nanopore Sequencing data", "homepage": "https://github.com/wdecoster/nanofilt"}, "NanoPlot": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"NanoPlot/1.28.4-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "NanoPlot/1.33.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Plotting suite for long read sequencing data and alignments", "homepage": "https://github.com/wdecoster/NanoPlot"}, "NanopolishComp": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"NanopolishComp/0.6.11-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files", "homepage": "https://adrienleger.com/NanopolishComp/"}, "NCO": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"NCO/5.0.1-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "NCO/5.0.6-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5", "homepage": "https://nco.sourceforge.net"}, "ncview": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ncview/2.1.7-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Ncview is a visual browser for netCDF format files.Typically you would use ncview to get a quick and easy, push-buttonlook at your netCDF files. You can view simple movies of the data,view along various dimensions, take a look at the actual data values,change color maps, invert the data, etc.", "homepage": "http://meteora.ucsd.edu/~pierce/ncview_home_page.html"}, "NewHybrids": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"NewHybrids/1.1_Beta3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "This implements a Gibbs sampler to estimate the posterior probability that genetically sampledindividuals fall into each of a set of user-defined hybrid categories.", "homepage": "https://ib.berkeley.edu/labs/slatkin/eriq/software/software.htm#NewHybs"}, "NLMpy": {"clusters": ["doduo", "skitty"], "versions": {"NLMpy/0.1.5-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"]}}, "description": "NLMpy is a Python package for the creation of neutral landscape models that are widely used in the modelling of ecological patterns and processes across landscapes.", "homepage": "https://pypi.org/project/nlmpy"}, "NOVOPlasty": {"clusters": ["doduo", "skitty"], "versions": {"NOVOPlasty/3.7-GCCcore-8.3.0": {"clusters": ["doduo", "skitty"]}}, "description": "NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes.", "homepage": "https://github.com/ndierckx/NOVOPlasty"}, "OpenAI-Gym": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenAI-Gym/0.17.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "atari-py-0.2.6, box2d-py-2.3.8, cloudpickle-1.3.0, gym-0.17.1, imageio-2.8.0, pyglet-1.4.10"}}, "description": "A toolkit for developing and comparing reinforcement learning algorithms.", "homepage": "https://gym.openai.com"}, "openCARP": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"openCARP/3.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "openCARP/6.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "openCARP is an open cardiac electrophysiology simulator for in-silico experiments.", "homepage": "https://opencarp.org"}, "OpenCoarrays": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenCoarrays/2.8.0-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenCoarrays is an open-source software project that supportsthe coarray Fortran (CAF) parallel programming features of the Fortran 2008standard and several features proposed for Fortran 2015 in the draft TechnicalSpecification TS 18508 Additional Parallel Features in Fortran.", "homepage": "https://github.com/sourceryinstitute/opencoarrays"}, "OpenFace": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenFace/2.2.0-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFace/2.2.0-foss-2021a-CUDA-11.3.1": {"clusters": ["joltik"]}}, "description": "OpenFace \u2013 a state-of-the art tool intended for facial landmarkdetection, head pose estimation, facial action unit recognition, and eye-gazeestimation.", "homepage": "https://github.com/TadasBaltrusaitis/OpenFace"}, "OpenFOAM-Extend": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenFOAM-Extend/4.0-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenFOAM-Extend/4.1-20191120-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik"]}, "OpenFOAM-Extend/4.1-20200408-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenFOAM is a free, open source CFD software package.OpenFOAM has an extensive range of features to solve anything from complex fluid flowsinvolving chemical reactions, turbulence and heat transfer,to solid dynamics and electromagnetics.", "homepage": "http://www.extend-project.de/"}, "OpenForceField": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenForceField/0.7.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bson-0.5.10, msgpack-python-0.5.6, OpenForceField-0.7.0, xmltodict-0.12.0"}}, "description": "Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.", "homepage": "https://github.com/openforcefield/openforcefield/releases"}, "OpenImageIO": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenImageIO/2.0.12-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenImageIO/2.0.12-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OpenImageIO is a library for reading and writing images, and a bunch of related classes, utilities, and applications.", "homepage": "https://openimageio.org/"}, "openkim-models": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"openkim-models/20190725-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "openkim-models/20190725-intel-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Open Knowledgebase of Interatomic Models.OpenKIM is an API and a collection of interatomic models (potentials) foratomistic simulations. It is a library that can be used by simulation programsto get access to the models in the OpenKIM database.This EasyBuild installs the models. The API itself is in the kim-apipackage.", "homepage": "https://openkim.org/"}, "OpenMM-PLUMED": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenMM-PLUMED/1.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "This project provides a connection between OpenMM andPLUMED. It allows you to bias or analyze an OpenMM simulation based oncollective variables.", "homepage": "https://github.com/openmm/openmm-plumed/"}, "OpenMMTools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenMMTools/0.20.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "hypothesis-5.20.0, ipython_genutils-0.2.0, jsonschema-3.2.0, jupyter_core-4.6.3, mpiplus-0.0.1, nbformat-5.0.7, OpenMMTools-0.20.0, pyrsistent-0.16.0, sortedcontainers-2.2.2, traitlets-4.3.3"}}, "description": "A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.openmmtools is a Python library layer that sits on top of OpenMM to provide access to a variety of useful tools for building full-featured molecular simulation packages.", "homepage": "https://github.com/choderalab/openmmtools"}, "OpenPIV": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenPIV/0.21.8-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "OpenPIV-0.21.8, progressbar2-3.51.4, python-utils-2.4.0"}}, "description": "OpenPIV is an open source Particle Image Velocimetry analysis software", "homepage": "http://www.openpiv.net"}, "OpenSees": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OpenSees/3.2.0-intel-2020a-Python-3.8.2-parallel": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "OpenSees/3.2.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Open System for Earthquake Engineering Simulation", "homepage": "https://opensees.berkeley.edu/index.php"}, "OPERA-MS": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"OPERA-MS/0.9.0-20200802-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "OPERA-MS is a hybrid metagenomic assembler which combines the advantages of short and long-read technologies to provide high quality assemblies, addressing issues of low contiguity for short-read only assemblies, and low base-pair quality for long-read only assemblies.", "homepage": "https://github.com/CSB5/OPERA-MS"}, "orca": {"clusters": ["doduo"], "versions": {"orca/1.3.0-GCCcore-8.3.0": {"clusters": ["doduo"]}, "orca/1.3.1-GCCcore-10.2.0": {"clusters": ["doduo"]}}, "description": "Orca is an Electron app that generates images and reports of Plotly things like plotly.js graphs, dash apps, dashboards from the command line.", "homepage": "https://github.com/plotly/orca"}, "p4est": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"p4est/2.8-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "p4est is a C library to manage a collection (a forest) of multipleconnected adaptive quadtrees or octrees in parallel.", "homepage": "https://www.p4est.org"}, "p7zip": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"p7zip/17.03-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "p7zip is a quick port of 7z.exe and 7za.exe (CLI version of7zip) for Unix. 7-Zip is a file archiver with highest compression ratio.", "homepage": "https://github.com/jinfeihan57/p7zip/"}, "packmol": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"packmol/v20.2.2-iccifort-2020.1.217": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Packing Optimization for Molecular Dynamics Simulations", "homepage": "http://m3g.iqm.unicamp.br/packmol"}, "pagmo": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pagmo/2.17.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "pagmo is a C++ scientific library for massively parallel optimization.", "homepage": "https://esa.github.io/pagmo2"}, "panaroo": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"panaroo/1.2.8-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "argcomplete-1.12.3, argh-0.26.2, gffutils-0.10.1, intbitset-2.4.1, panaroo-1.2.8, sklearn-0.0"}}, "description": "A pangenome analysis pipeline.", "homepage": "https://gtonkinhill.github.io/panaroo/"}, "pandas": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"pandas/1.1.2-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language.", "homepage": "https://pypi.python.org/pypi/pandas/"}, "Pandoc": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Pandoc/2.13": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "If you need to convert files from one markup format into another, pandoc is your swiss-army knife", "homepage": "https://pandoc.org"}, "ParmEd": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ParmEd/3.2.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParmEd/3.2.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ParmEd is a general tool for aiding in investigations of biomolecular systems using popular molecular simulation packages, like Amber, CHARMM, and OpenMM written in Python.", "homepage": "https://parmed.github.io/ParmEd"}, "ParMGridGen": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"ParMGridGen/1.0-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "ParMGridGen/1.0-iimpi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "ParMGridGen is an MPI-based parallel library that is based on the serial package MGridGen, that implements (serial) algorithms for obtaining a sequence of successive coarse grids that are well-suited for geometric multigrid methods.", "homepage": "http://www-users.cs.umn.edu/~moulitsa/software.html"}, "PartitionFinder": {"clusters": ["doduo", "skitty"], "versions": {"PartitionFinder/2.1.1-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "skitty"]}}, "description": "PartitionFinder 2 is a Python program for simultaneouslychoosing partitioning schemes and models of molecular evolution for phylogeneticanalyses of DNA, protein, and morphological data. You can PartitionFinder 2before running a phylogenetic analysis, in order to decide how to divide upyour sequence data into separate blocks before analysis, and to simultaneouslyperform model selection on each of those blocks.", "homepage": "https://www.robertlanfear.com/partitionfinder"}, "pauvre": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"pauvre/0.1923-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "pauvre/0.1924-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Tools for plotting Oxford Nanopore and other long-read data", "homepage": "https://github.com/conchoecia/pauvre"}, "pftoolsV3": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"pftoolsV3/3.2.11-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A suite of tools to build and search generalized profiles (protein and DNA).", "homepage": "https://github.com/sib-swiss/pftools3"}, "phonemizer": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"phonemizer/2.2.1-gompi-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "clldutils-3.5.2, colorlog-4.2.1, csvw-1.8.0, isodate-0.6.0, phonemizer-2.2.1, regex-2020.7.14, rfc3986-1.4.0, segments-2.1.3, uritemplate-3.0.1"}}, "description": "The phonemizer allows simple phonemization of words and texts in many languages.Provides both the phonemize command-line tool and the Python function phonemizer.phonemize.It is using four backends: espeak, espeak-mbrola, festival and segments.", "homepage": "https://github.com/bootphon/phonemizer"}, "phototonic": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"phototonic/2.1-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Phototonic is an image viewer and organizer", "homepage": "https://github.com/oferkv/phototonic"}, "pIRS": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"pIRS/2.0.2-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "pIRS (profile based Illumina pair-end Reads Simulator) is a program for simulating paired-end readsfrom a reference genome. It is optimized for simulating reads similar to those generated from the Illumina platform.", "homepage": "https://github.com/galaxy001/pirs"}, "plotly-orca": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"plotly-orca/1.3.0-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "plotly-orca/1.3.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Orca is an Electron app that generates images and reports of Plotly things like plotly.js graphs, dash apps, dashboards from the command line.", "homepage": "https://github.com/plotly/orca"}, "PLY": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"PLY/3.11-GCCcore-8.3.0-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PLY is yet another implementation of lex and yacc for Python.", "homepage": "https://www.dabeaz.com/ply/"}, "Porechop": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Porechop/0.2.4-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity", "homepage": "https://github.com/rrwick/Porechop"}, "porefoam": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"porefoam/2021-09-21-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Direct pore-scale simulation of single- and two-phase flow through confined media", "homepage": "https://github.com/ImperialCollegeLondon/porefoam"}, "POV-Ray": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"POV-Ray/3.7.0.8-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports.", "homepage": "https://www.povray.org/"}, "PRANK": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PRANK/170427-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "PRANK/170427-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. PRANK is based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events.", "homepage": "http://wasabiapp.org/software/prank/"}, "Primer3": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"Primer3/2.5.0-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Primer3 is a widely used program for designing PCR primers (PCR = 'Polymerase Chain Reaction'). PCR is an essential and ubiquitous tool in genetics and molecular biology. Primer3 can also design hybridization probes and sequencing primers.", "homepage": "https://primer3.org/"}, "PRISMS-PF": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"PRISMS-PF/2.2-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PRISMS-PF is a powerful, massively parallel finite element code for conducting phase field and other related simulations of microstructural evolution.", "homepage": "https://prisms-center.github.io/phaseField"}, "prokka": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"prokka/1.14.5-gompi-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "prokka/1.14.5-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Prokka is a software tool for the rapid annotation of prokaryotic genomes.", "homepage": "https://www.vicbioinformatics.com/software.prokka.shtml"}, "pyfasta": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pyfasta/0.5.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "fast, memory-efficient, pythonic (and command-line) access to fasta sequence files", "homepage": "https://pypi.org/project/pyfasta/"}, "PyFoam": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyFoam/2020.5-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A Python library to control OpenFOAM-runs and manipulate OpenFOAM-data.", "homepage": "http://openfoamwiki.net/index.php/Contrib/PyFoam"}, "PyGEOS": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"PyGEOS/0.8-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PyGEOS is a C/Python library with vectorized geometry functions. The geometry operations are done in the open-source geometry library GEOS. PyGEOS wraps these operations in NumPy ufuncs providing a performance improvement when operating on arrays of geometries.", "homepage": "https://pygeos.readthedocs.io"}, "pygmo": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pygmo/2.16.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "cloudpickle-1.6.0, dill-0.3.3"}}, "description": "pygmo is a scientific Python library for massively parallel optimization.", "homepage": "https://esa.github.io/pygmo2"}, "pymbar": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"pymbar/3.0.3-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The pymbar package contains the pymbar suite of tools for the analysis ofsimulated and experimental data with the multistate Bennett acceptanceratio (MBAR) estimator.", "homepage": "http://pymbar.readthedocs.io/en/master/"}, "pymca": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pymca/5.6.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "fisx-1.2.0, pymca-5.6.3"}}, "description": "The PyMca X-Ray Fluorescence Toolkit, including PyMca5 and fisx.", "homepage": "https://github.com/vasole/pymca"}, "PyOD": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyOD/0.8.7-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "PyOD/0.8.7-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PyOD is a comprehensive and scalable Python toolkit for detecting outlying objects in multivariate data.", "homepage": "https://pyod.readthedocs.io"}, "pyparsing": {"clusters": ["doduo", "skitty"], "versions": {"pyparsing/2.4.6-GCCcore-8.3.0-Python-2.7.16": {"clusters": ["doduo", "skitty"]}}, "description": "The pyparsing module is an alternative approach to creating andexecuting simple grammars, vs. the traditional lex/yacc approach, or the use ofregular expressions. The pyparsing module provides a library of classes thatclient code uses to construct the grammar directly in Python code.", "homepage": "https://github.com/pyparsing/pyparsing"}, "PyRe": {"clusters": ["doduo", "skitty"], "versions": {"PyRe/5.0.3-20190221-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"]}, "PyRe/5.0.3-20190221-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"]}}, "description": "PyRe (Python Reliability) is a Python module for structural reliability analysis.", "homepage": "https://hackl.science/pyre"}, "PyRETIS": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"PyRETIS/2.5.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "colorama-0.4.4, PyRETIS-2.5.0"}, "PyRETIS/2.5.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "colorama-0.4.4, PyRETIS-2.5.0"}, "PyRETIS/2.5.0-intel-2020a-Python-3.8.2": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "colorama-0.4.3, PyRETIS-2.5.0, sphinx-bootstrap-theme-0.7.1"}}, "description": "PyRETIS is a Python library for rare event molecular simulations with emphasis on methods based on transition interface sampling and replica exchange transition interface sampling.", "homepage": "http://www.pyretis.org"}, "pysamstats": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"pysamstats/1.1.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "A Python utility for calculating statisticsagainst genome positions based on sequence alignments from a SAM or BAM file.", "homepage": "https://github.com/alimanfoo/pysamstats"}, "pySCENIC": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"pySCENIC/0.10.3-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "arboreto-0.1.5, boltons-20.2.0, cytoolz-0.10.1, dill-0.3.2, frozendict-1.2, interlap-0.2.6, loompy-3.0.6, multiprocessing_on_dill-3.5.0a4, numpy_groupies-0.9.10, pyscenic-0.10.3, umap-learn-0.4.6"}, "pySCENIC/0.10.3-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "arboreto-0.1.5, boltons-20.2.0, cytoolz-0.10.1, dill-0.3.2, frozendict-1.2, interlap-0.2.6, loompy-3.0.6, multiprocessing_on_dill-3.5.0a4, numpy_groupies-0.9.10, pyscenic-0.10.3, umap-learn-0.4.6"}}, "description": "pySCENIC is a lightning-fast python implementation of the SCENICpipeline (Single-Cell rEgulatory Network Inference and Clustering) which enablesbiologists to infer transcription factors, gene regulatory networks andcell types from single-cell RNA-seq data.", "homepage": "https://github.com/aertslab/pySCENIC"}, "pysndfx": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"pysndfx/0.3.6-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "A lightweight Python wrapper for SoX - Sound eXchange. Supported effects range from EQ and compression to phasers, reverb and pitch shifters.", "homepage": "https://github.com/carlthome/python-audio-effects"}, "PyStan": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"PyStan/2.19.1.1-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Python interface to Stan, a package for Bayesian inference using the No-U-Turn sampler, a variant of Hamiltonian Monte Carlo.", "homepage": "https://github.com/stan-dev/pystan"}, "python-Levenshtein": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"python-Levenshtein/0.12.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "python-Levenshtein/0.12.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Python extension for computing string edit distances and similarities.", "homepage": "https://pypi.org/project/python-Levenshtein/"}, "python-weka-wrapper3": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"python-weka-wrapper3/0.1.11-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "javabridge-1.0.18, python-weka-wrapper3-0.1.11"}}, "description": "Python3 wrapper for the Weka Machine Learning Workbench", "homepage": "https://github.com/fracpete/python-weka-wrapper3"}, "pythran": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"pythran/0.9.4.post1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "beniget-0.2.0, gast-0.3.2, ply-3.11, pythran-0.9.4.post1"}}, "description": "Pythran is an ahead of time compiler for a subset of the Python language,with a focus on scientific computing. It takes a Python module annotated with a few interface descriptionand turns it into a native Python module with the same interface, but (hopefully) faster.", "homepage": "https://pythran.readthedocs.io"}, "PyTorch-Geometric": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"PyTorch-Geometric/1.3.2-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"], "extensions": "googledrivedownloader-0.4, plyfile-0.7.1, torch_cluster-1.4.5, torch_geometric-1.3.2, torch_scatter-1.4.0, torch_sparse-0.4.3, torch_spline_conv-1.1.1"}, "PyTorch-Geometric/1.4.2-foss-2019b-Python-3.7.4-PyTorch-1.4.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "googledrivedownloader-0.4, plyfile-0.7.1, torch_cluster-1.4.5, torch_geometric-1.4.2, torch_scatter-2.0.4, torch_sparse-0.6.0, torch_spline_conv-1.2.0"}, "PyTorch-Geometric/1.7.0-foss-2020b-numba-0.53.1": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "googledrivedownloader-0.4, plyfile-0.7.4, python-louvain-0.15, torch_cluster-1.5.9, torch_geometric-1.7.0, torch_scatter-2.0.7, torch_sparse-0.6.9, torch_spline_conv-1.2.1"}, "PyTorch-Geometric/1.6.3-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "googledrivedownloader-0.4, plyfile-0.7.3, python-louvain-0.15, torch_cluster-1.5.8, torch_geometric-1.6.3, torch_scatter-2.0.5, torch_sparse-0.6.8, torch_spline_conv-1.2.1"}, "PyTorch-Geometric/1.7.0-fosscuda-2020b-numba-0.53.1": {"clusters": ["joltik"], "extensions": "googledrivedownloader-0.4, plyfile-0.7.4, python-louvain-0.15, torch_cluster-1.5.9, torch_geometric-1.7.0, torch_scatter-2.0.7, torch_sparse-0.6.9, torch_spline_conv-1.2.1"}}, "description": "PyTorch Geometric (PyG) is a geometric deep learning extension library for PyTorch.", "homepage": "https://github.com/rusty1s/pytorch_geometric"}, "PyVCF": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"PyVCF/0.6.8-GCC-8.3.0": {"clusters": ["doduo"]}, "PyVCF/0.6.8-GCC-8.3.0-Python-2.7.16": {"clusters": ["donphan", "joltik"]}}, "description": "A Variant Call Format reader for Python.", "homepage": "https://github.com/jamescasbon/PyVCF"}, "PyWavelets": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"PyWavelets/1.1.1-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "PyWavelets is open source wavelet transform software for Python.", "homepage": "https://pywavelets.readthedocs.io"}, "qcat": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"qcat/1.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "qcat/1.1.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "qcat/1.1.0-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files", "homepage": "https://github.com/nanoporetech/qcat/releases"}, "Qualimap": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Qualimap/2.2.1-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.", "homepage": "http://qualimap.bioinfo.cipf.es/"}, "Ragout": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Ragout/2.3-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Ragout (Reference-Assisted Genome Ordering UTility) is a toolfor chromosome-level scaffolding using multiple references. Given initialassembly fragments (contigs/scaffolds) and one or multiple related references(complete or draft), it produces a chromosome-scale assembly (as a set ofscaffolds).", "homepage": "https://github.com/fenderglass/Ragout"}, "RagTag": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RagTag/2.0.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "RagTag is a collection of software tools for scaffolding andimproving modern genome assemblies. Tasks include: homology-based misassemblycorrection, homology-based assembly scaffolding and patching, and scaffoldmerging. RagTag also provides command line utilities for working with commongenome assembly file formats.", "homepage": "https://github.com/malonge/RagTag"}, "RASPA2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"RASPA2/2.0.41-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "RASPA is a software package for simulating adsorption and diffusion ofmolecules in flexible nanoporous materials.", "homepage": "https://iraspa.org/raspa/"}, "rasterstats": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"rasterstats/0.15.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "affine-2.3.0, cligj-0.5.0, rasterstats-0.15.0, simplejson-3.17.2"}}, "description": "rasterstats is a Python module for summarizing geospatial raster datasets based on vector geometries.", "homepage": "https://github.com/perrygeo/python-rasterstats"}, "Ray": {"clusters": ["doduo"], "versions": {"Ray/0.8.4-foss-2019b-Python-3.7.4": {"clusters": ["doduo"], "extensions": "aiohttp-3.6.2, async-timeout-3.0.1, beautifulsoup4-4.9.0, click-7.1.1, colorama-0.4.3, filelock-3.0.12, google-2.0.3, grpcio-1.28.1, idna-ssl-1.1.0, importlib-metadata-1.6.0, jsonschema-3.2.0, lz4-3.0.2, msgpack-1.0.0, multidict-4.7.5, multidict-4.7.5, py-spy-0.3.3, pyrsistent-0.16.0, Ray-0.8.4, redis-3.4.1, soupsieve-2.0, typing-extensions-3.7.4.2, yarl-1.4.2"}}, "description": "Ray is a fast and simple framework for building and running distributed applications.", "homepage": "https://docs.ray.io/en/latest/"}, "rgdal": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"rgdal/1.4-8-foss-2019b-R-3.6.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "rgdal/1.5-16-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "rgdal/1.5-23-foss-2020b-R-4.0.4": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "rgdal/1.5-23-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4 and <= 2.5.0) and access to projection/transformation operations from the 'PROJ.4' library.", "homepage": "https://rgdal.r-forge.r-project.org/"}, "rgeos": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"rgeos/0.5-2-foss-2019b-R-3.6.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "rgeos/0.5-5-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "rgeos/0.5-5-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "R interface to Geometry Engine - Open Source (GEOS) using the C API for topology operations on geometries", "homepage": "https://cran.r-project.org/web/packages/rgeos/"}, "rickflow": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"rickflow/0.7.0-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "mpiplus-0.0.1, openmmtools-0.19.0, pymbar-3.0.5, rickflow-0.7.0"}, "rickflow/0.7.0-20200529-intel-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "mpiplus-0.0.1, openmmtools-0.19.0, pymbar-3.0.5, rickflow-0.7.0-20200529"}}, "description": "Running and Analyzing OpenMM Jobs", "homepage": "https://gitlab.com/Olllom/rickflow"}, "rmarkdown": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"rmarkdown/2.20-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Convert R Markdown documents into a variety of formats.", "homepage": "https://cran.r-project.org/web/packages/rmarkdown"}, "rMATS-turbo": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"rMATS-turbo/4.1.1-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "rMATS turbo is the C/Cython version of rMATS (refer to http://rnaseq-mats.sourceforge.net).", "homepage": "https://github.com/Xinglab/rmats-turbo"}, "RnBeads": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"RnBeads/2.6.0-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "RnBeads-2.6.0, RnBeads.hg19-1.20.0, RnBeads.hg38-1.20.0, RnBeads.mm10-1.20.0"}}, "description": "RnBeads is an R package for comprehensive analysis of DNA methylation data obtained with anyexperimental protocol that provides single-CpG resolution.", "homepage": "https://rnbeads.org"}, "Roary": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Roary/3.13.0-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Rapid large-scale prokaryote pan genome analysis", "homepage": "https://github.com/sanger-pathogens/Roary"}, "rstanarm": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"rstanarm/2.19.3-foss-2019b-R-3.6.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "bayesplot-1.7.1, BH-1.72.0-3, colourpicker-1.0, dygraphs-1.1.1.6, packrat-0.5.0, RcppParallel-4.4.4, rsconnect-0.8.16, rstanarm-2.19.3, rstantools-2.0.0, shinyjs-1.1, shinystan-2.5.0"}}, "description": "Estimates previously compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation.", "homepage": "https://r-forge.r-project.org/projects/rstanarm"}, "rstudio": {"clusters": ["doduo"], "versions": {"rstudio/1.3.959-foss-2020a-Java-11-R-4.0.0": {"clusters": ["doduo"]}}, "description": "This RStudio Server version.RStudio is a set of integrated tools designed to help you be more productive with R.The server can be started with: rserver --server-daemonize=0 --www-port 8787 --rsession-which-r=$(which R)", "homepage": "https://www.rstudio.com/"}, "Sailfish": {"clusters": ["doduo", "skitty"], "versions": {"Sailfish/0.10.1-gompi-2019b": {"clusters": ["doduo", "skitty"]}}, "description": "Sailfish is a software tool that implements a novel, alignment-free algorithm for the estimation of isoform abundances directly from a set of reference sequences and RNA-seq reads.", "homepage": "http://www.cs.cmu.edu/~ckingsf/software/sailfish/"}, "samblaster": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"samblaster/0.1.26-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "samblaster is a fast and flexible program for marking duplicates in read-id grouped1 paired-end SAM files.", "homepage": "https://github.com/GregoryFaust/samblaster"}, "sansa": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"sansa/0.0.7-gompi-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Structural variant (SV) annotation, a companion to the 'dolly'tool.", "homepage": "https://github.com/dellytools/sansa/"}, "SCENIC": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SCENIC/1.2.4-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SCENIC Suite is a set of tools to study and decipher gene regulation.", "homepage": "https://scenic.aertslab.org"}, "scGeneFit": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"scGeneFit/1.0.2-foss-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Python code for genetic marker selection using linear programming.", "homepage": "https://github.com/solevillar/scGeneFit-python"}, "scipy": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"scipy/1.4.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SciPy is a collection of mathematical algorithms and convenience functions built on the Numpy extension for Python.", "homepage": "https://www.scipy.org"}, "SDSL": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SDSL/2.1.1-20191211-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures.", "homepage": "https://github.com/simongog/sdsl-lite"}, "SECAPR": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SECAPR/1.1.15-foss-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "cogent-1.9, SECAPR-1.1.15"}}, "description": "SECAPR is a bioinformatics pipeline for the rapid anduser-friendly processing of targeted enriched Illumina sequences, fromraw reads to alignments", "homepage": "https://github.com/AntonelliLab/seqcap_processor"}, "segmentation-models": {"clusters": ["doduo", "skitty"], "versions": {"segmentation-models/1.0.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "skitty"], "extensions": "efficientnet-1.0.0, image_classifiers-1.0.0, imageio-2.8.0, PyWavelets-1.1.1, segmentation_models-1.0.1"}}, "description": "Python library with Neural Networks for Image Segmentation based on Keras and TensorFlow.", "homepage": "https://github.com/qubvel/segmentation_models"}, "SeqKit": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SeqKit/2.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation", "homepage": "https://bioinf.shenwei.me/seqkit/"}, "SeqLib": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"SeqLib/1.2.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "C++ interface to HTSlib, BWA-MEM and Fermi.", "homepage": "https://github.com/walaj/SeqLib"}, "SeuratData": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SeuratData/20210514-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SeuratData is a mechanism for distributing datasets in the form of Seurat objects using R's internalpackage and data management systems.", "homepage": "https://github.com/satijalab/seurat-data"}, "SeuratWrappers": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SeuratWrappers/20210528-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "SeuratWrappers is a collection of community-provided methods and extensions for Seurat", "homepage": "https://github.com/satijalab/seurat-wrappers"}, "sf": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"sf/0.9-5-foss-2020a-R-4.0.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Support for simple features, a standardized way to encode spatial vector data. Binds to GDAL forreading and writing data, to GEOS for geometrical operations, and to PROJ for projection conversions and datumtransformations.", "homepage": "https://cran.r-project.org/package=sf"}, "Shasta": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Shasta/0.8.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using DNA reads generatedby Oxford Nanopore flow cells as input. Computational methods used by the Shasta assembler include:Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors inhomopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads. Using in some phases ofthe computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k \u2248 10).", "homepage": "https://github.com/chanzuckerberg/shasta"}, "Sibelia": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Sibelia/3.0.7-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms.", "homepage": "http://bioinf.spbau.ru/en/sibelia"}, "silx": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"silx/0.14.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "hdf5plugin-2.3.1, silx-0.14.0"}}, "description": "The silx project provides a collection of Python packages to support the development of data assessment, reduction and analysis applications at synchrotron radiation facilities.", "homepage": "http://www.silx.org/"}, "SimNIBS": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SimNIBS/3.2.4-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "extensions": "SimNIBS-3.2.4"}}, "description": "SimNIBS is a free and open source software package for the Simulation of Non-invasive Brain Stimulation.", "homepage": "https://simnibs.github.io/simnibs"}, "SimpleElastix": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SimpleElastix/1.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Multi-lingual medical image registration library.", "homepage": "https://simpleelastix.github.io"}, "SiNVICT": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SiNVICT/1.0-20180817-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SiNVICT is a tool for the detection of SNVs and indels from cfDNA/ctDNA samples obtained by ultra-deep sequencing.", "homepage": "https://github.com/sfu-compbio/sinvict"}, "SLATEC": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SLATEC/4.1-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SLATEC Common Mathematical Library, a comprehensive software library containing over 1400 general purpose mathematical and statistical routines written in Fortran 77.", "homepage": "https://www.netlib.org/slatec/"}, "SLiM": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"SLiM/3.4-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "SLiM is an evolutionary simulation framework that combines a powerful engine for population genetic simulations with the capability of modeling arbitrarily complex evolutionary scenarios.", "homepage": "https://messerlab.org/slim"}, "SMV": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SMV/6.7.17-iccifort-2020.4.304": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Smokeview is a visualization program that displays output of FDS and CFAST simulations.", "homepage": "https://github.com/firemodels/smv"}, "snippy": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"snippy/4.6.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Rapid haploid variant calling and core genome alignment", "homepage": "https://github.com/tseemann/snippy"}, "snp-sites": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"snp-sites/2.5.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Finds SNP sites from a multi-FASTA alignment file.", "homepage": "https://sanger-pathogens.github.io/snp-sites/"}, "snpEff": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"snpEff/5.0e-GCCcore-10.2.0-Java-13": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes).", "homepage": "https://pcingola.github.io/SnpEff/"}, "sonic": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"sonic/20180202-gompi-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Sonic is a simple algorithm for speeding up or slowing down speech. However,it's optimized for speed ups of over 2X, unlike previous algorithms for changingspeech rate. The Sonic library is a very simple ANSI C library that is designedto easily be integrated into streaming voice applications, like TTS back ends.", "homepage": "https://github.com/espeak-ng/sonic"}, "spatialreg": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"spatialreg/1.1-5-foss-2019b-R-3.6.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "sf-0.8-0, spatialreg-1.1-5, spdep-1.1-3"}, "spatialreg/1.1-8-foss-2021a-R-4.1.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "s2-1.0.6, sf-1.0-2, spatialreg-1.1-8, spdep-1.1-8, wk-0.5.0"}}, "description": "A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep', 'sphet' and 'spse'.", "homepage": "https://cran.r-project.org/package=spatialreg"}, "speech_tools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"speech_tools/2.5.0-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Edinburgh Speech Tools Library is a collection of C++ class,functions and related programs for manipulating the sorts of objectsused in speech processing. It includes support for reading and writingwaveforms, parameter files (LPC, Ceptra, F0) in various formatsand converting between them.It also includes support for linguistic type objects and supportfor various label files and ngrams (with smoothing).", "homepage": "['http://festvox.org/festival/']"}, "Spyder": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Spyder/4.1.5-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "arrow-0.17.0, astroid-2.4.2, async_generator-1.10, autopep8-1.5.4, binaryornot-0.4.4, bleach-3.2.1, cloudpickle-1.6.0, cookiecutter-1.7.2, decorator-4.4.2, diff-match-patch-20200713, flake8-3.8.4, helpdev-0.7.1, isort-5.6.3, jedi-0.17.1, jeepney-0.4.3, jinja2-time-0.2.0, jupyter_client-6.1.7, jupyterlab_pygments-0.1.2, keyring-21.4.0, keyrings.alt-4.0.0, lazy-object-proxy-1.4.3, mccabe-0.6.1, nbclient-0.5.1, nest_asyncio-1.4.1, numpydoc-1.1.0, pathtools-0.1.2, poyo-0.5.0, pycodestyle-2.6.0, pydocstyle-5.1.1, pyflakes-2.2.0, pylint-2.6.0, pyrsistent-0.17.3, python-jsonrpc-server-0.4.0, python-language-server-0.35.1, python-slugify-4.0.1, pyxdg-0.26, QDarkStyle-2.8.1, QtAwesome-1.0.1, qtconsole-4.7.7, QtPy-1.9.0, rope-0.18.0, SecretStorage-3.1.2, spyder-4.1.5, spyder-kernels-1.9.4, text-unidecode-1.3, traitlets-5.0.4, typed_ast-1.4.1, ujson-4.0.1, watchdog-0.10.3, wrapt-1.12.1, wurlitzer-2.0.1, yapf-0.30.0"}}, "description": "Spyder is an interactive Python development environment providing MATLAB-like features in a simple and light-weighted software.", "homepage": "https://github.com/spyder-ide/spyder"}, "SRPRISM": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SRPRISM/3.1.2-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Single Read Paired Read Indel Substitution Minimizer", "homepage": "https://github.com/ncbi/SRPRISM"}, "SRST2": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"SRST2/0.2.0-20210620-foss-2020b-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Short Read Sequence Typing for Bacterial Pathogens", "homepage": "https://katholt.github.io/srst2"}, "SSPACE_Basic": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"SSPACE_Basic/2.1.1-GCC-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension", "homepage": "https://github.com/nsoranzo/sspace_basic"}, "SSW": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SSW/1.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. We also provide a software that can do protein and genome alignment directly. Current version of our implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.", "homepage": "https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library"}, "STACEY": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"STACEY/1.2.5-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "The BEAST2 package STACEY can be used for species delimitation and species tree estimation,based on the multispecies coalescent model.", "homepage": "http://www.indriid.com/software.html"}, "Stacks": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Stacks/2.5-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Stacks/2.53-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.", "homepage": "http://catchenlab.life.illinois.edu/stacks"}, "stars": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "lwgeom-0.2-5, ncmeta-0.3.0, RNetCDF-2.3-1, stars-0.4-3"}}, "description": "Reading, manipulating, writing and plotting spatiotemporal arrays (raster and vector data cubes) in R, using GDAL bindings provided by sf, and NetCDF bindings by ncmeta and RNetCDF.", "homepage": "https://cran.r-project.org/package=stars"}, "Stata": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Stata/15": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Stata is a complete, integrated statistical software package that provides everything you need for data analysis, data management, and graphics.", "homepage": "https://www.stata.com/"}, "Statistics-R": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Statistics-R/0.34-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Perl interface with the R statistical program", "homepage": "https://metacpan.org/pod/Statistics::R"}, "STREAM": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"STREAM/5.10-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The STREAM benchmark is a simple synthetic benchmark program that measures sustainable memory bandwidth (in MB/s) and the corresponding computation rate for simple vector kernels.", "homepage": "https://www.cs.virginia.edu/stream/"}, "Structure": {"clusters": ["doduo"], "versions": {"Structure/2.3.4-iccifort-2019.5.281": {"clusters": ["doduo"]}}, "description": "The program structure is a free software package for using multi-locus genotype data to investigate population structure.", "homepage": "https://web.stanford.edu/group/pritchardlab/structure.html"}, "suave": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"suave/20160529-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "suave is an interactive web application to visualize read depthratios between two samples and the structural variants of one of the samples(typically the \"case\" sample in a case/control setup such as tumor/normalcomparison).", "homepage": "https://github.com/dellytools/suave"}, "Subread": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Subread/2.0.0-GCC-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Subread/2.0.3-GCC-9.3.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "High performance read alignment, quantification and mutation discovery", "homepage": "http://subread.sourceforge.net/"}, "SuperLU": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"SuperLU/5.2.2-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.", "homepage": "https://crd-legacy.lbl.gov/~xiaoye/SuperLU/"}, "swissknife": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"swissknife/1.80-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Perl module for reading and writing UniProtKB data in plain text format.", "homepage": "https://sourceforge.net/projects/swissknife/"}, "TALON": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TALON/5.0-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "TALON is a Python package for identifying and quantifying known andnovel genes/isoforms in long-read transcriptome data sets. TALON is technology-agnosticin that it works from mapped SAM files, allowing data from different sequencing platforms(i.e. PacBio and Oxford Nanopore) to be analyzed side by side.", "homepage": "https://github.com/mortazavilab/TALON"}, "taxator-tk": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"taxator-tk/1.3.3-GCC-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "taxator-tk/1.3.3-gompi-2020b": {"clusters": ["doduo"]}}, "description": "A set of programs for the taxonomic analysis of nucleotide sequence data", "homepage": "https://github.com/fungs/taxator-tk"}, "tbl2asn": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tbl2asn/20220427-linux64": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "tbl2asn/25.8-linux64": {"clusters": ["skitty"]}}, "description": "Tbl2asn is a command-line program that automates the creation of sequence records for submission to GenBank", "homepage": "https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/"}, "TCLAP": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"TCLAP/1.2.4-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "TCLAP is a small, flexible library that provides a simple interface for defining and accessingcommand line arguments. It was intially inspired by the user friendly CLAP libary.", "homepage": "http://tclap.sourceforge.net/"}, "TEtranscripts": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"TEtranscripts/2.2.0-foss-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "argparse-1.4.0, TEtranscripts-2.2.0"}}, "description": "TEtranscripts and TEcount takes RNA-seq (and similar data) and annotates readsto both genes & transposable elements.TEtranscripts then performs differential analysis using DESeq2.", "homepage": "https://github.com/mhammell-laboratory/TEtranscripts"}, "texinfo": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"texinfo/6.7-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "texinfo/6.7-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Texinfo is the official documentation format of the GNU project.", "homepage": "https://www.gnu.org/software/texinfo/"}, "time": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"time/1.9-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "time/1.9-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running.", "homepage": "https://www.gnu.org/software/time/"}, "tMAE": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"tMAE/1.0.0-foss-2020b-R-4.0.3": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Package containing functions to: perform a negative binomial test on allele-specific counts add gnomAD minor allele frequencies MAplot (FC vs total counts) of allele-specific counts and results allelic counts (ALT vs REF)", "homepage": "https://github.com/mumichae/tMAE"}, "tmux": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"tmux/3.2a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "tmux is a terminal multiplexer: it enables a number ofterminals to be created, accessed, and controlled from a single screen. tmuxmay be detached from a screen and continue running in the background, thenlater reattached.", "homepage": "https://github.com/tmux/tmux/"}, "Tombo": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Tombo/1.5.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "mappy-2.17, ont-tombo-1.5.1, pyfaidx-0.5.8"}}, "description": "Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.", "homepage": "https://github.com/nanoporetech/tombo"}, "TranscriptClean": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"TranscriptClean/2.0.2-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "TranscriptClean is a Python program that corrects mismatches, microindels,and noncanonical splice junctions in long reads that have been mapped to the genome.", "homepage": "https://github.com/mortazavilab/TranscriptClean"}, "TransDecoder": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"TransDecoder/5.5.0-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.", "homepage": "https://github.com/TransDecoder/TransDecoder/wiki"}, "treatSens": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"treatSens/3.0-20201002-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment.", "homepage": "https://github.com/vdorie/treatSens"}, "Trilinos": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Trilinos/12.12.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages.", "homepage": "https://trilinos.org"}, "Trim_Galore": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "Trim_Galore/0.6.6-GCC-10.2.0-Python-2.7.18": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Trim Galore is a wrapper around Cutadapt and FastQC toconsistently apply adapter and quality trimming to FastQ files, with extrafunctionality for RRBS data.", "homepage": "https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/"}, "Trycycler": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Trycycler/0.3.3-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes.", "homepage": "https://github.com/rrwick/Trycycler"}, "tsne": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"tsne/0.1.8-intel-2019b-Python-2.7.16": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Python library containing T-SNE algorithms.", "homepage": "https://github.com/danielfrg/tsne"}, "UCLUST": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"UCLUST/1.2.22q-i86linux64": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "UCLUST: Extreme high-speed sequence clustering, alignment and database search.", "homepage": "http://www.drive5.com/usearch/index.html"}, "UFL": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"UFL/2019.1.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Unified Form Language (UFL) is a domain specific language for declaration of finite element discretizations of variational forms. More precisely, it defines a flexible interface for choosing finite element spaces and defining expressions for weak forms in a notation close to mathematical notation.", "homepage": "https://bitbucket.org/fenics-project/ufl"}, "UMI-tools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"UMI-tools/1.0.1-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "regex-2020.4.4, UMI-tools-1.0.1"}}, "description": "Tools for handling Unique Molecular Identifiers in NGS data sets", "homepage": "https://umi-tools.readthedocs.io"}, "umi4cPackage": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"umi4cPackage/20200116-foss-2020a-R-4.0.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "umi4cPackage is a processing and analysis pipeline for UMI-4C experiment.", "homepage": "https://github.com/tanaylab/umi4cpackage"}, "Unicycler": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Unicycler/0.4.8-gompi-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline.", "homepage": "https://github.com/rrwick/Unicycler"}, "unimap": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"unimap/0.1-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "Unimap is a fork of minimap2 optimized for assembly-to-referencealignment. It integrates the minigraph chaining algorithm and can align throughlong INDELs (up to 100kb by default) much faster than minimap2. Unimap is abetter fit for resolving segmental duplications and is recommended over minimap2for alignment between high-quality assemblies.Unimap does not replace minimap2 for other types of alignment. It drops thesupport of multi-part index and short-read mapping. Its long-read alignment isdifferent from minimap2 but is not necessarily better. Unimap is more of aspecialized minimap2 at the moment.", "homepage": "https://github.com/lh3/unimap"}, "Vala": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"Vala/0.52.4-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Vala is a programming language using modern high level abstractions without imposing additional runtimerequirements and without using a different ABI compared to applications and libraries written in C.", "homepage": "https://wiki.gnome.org/Projects/Vala"}, "vbz_compression": {"clusters": ["doduo"], "versions": {"vbz_compression/1.0.1-gompi-2020b": {"clusters": ["doduo"]}}, "description": "VBZ HDF5 plugin for nanopolish", "homepage": "https://github.com/nanoporetech/vbz_compression"}, "VCFtools": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"VCFtools/0.1.16-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}, "VCFtools/0.1.16-iccifort-2019.5.281": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.", "homepage": "https://vcftools.github.io"}, "VMD": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"VMD/1.9.4a51-foss-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.", "homepage": "https://www.ks.uiuc.edu/Research/vmd"}, "VMTK": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"VMTK/1.4.0-foss-2019b-Python-3.7.4": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "vmtk is a collection of libraries and toolsfor 3D reconstruction, geometric analysis, mesh generation andsurface data analysis for image-based modeling of blood vessels.", "homepage": "https://vmtk.org"}, "vt": {"clusters": ["doduo", "donphan", "joltik"], "versions": {"vt/0.57721-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik"]}}, "description": "A tool set for short variant discovery in genetic sequence data.", "homepage": "https://genome.sph.umich.edu/wiki/Vt"}, "waves2Foam": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"waves2Foam/20200703-foss-2019b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The library waves2Foam is a toolbox used to generate and absorb free surface water waves.", "homepage": "https://openfoamwiki.net/index.php/Contrib/waves2Foam"}, "wgsim": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"wgsim/20111017-GCC-10.2.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "Wgsim is a small tool for simulating sequence reads from a reference genome.", "homepage": "https://github.com/lh3/wgsim/"}, "WHAM": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"WHAM/2.0.10.2-intel-2020a-kj_mol": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "WHAM/2.0.10.2-intel-2020a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "An implementation of WHAM: the Weighted Histogram Analysis Method", "homepage": "http://membrane.urmc.rochester.edu/?page_id=126"}, "WIEN2k": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"WIEN2k/19.2-intel-2020b": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "WIEN2k/21.1-intel-2021a": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The program package WIEN2k allows to perform electronic structure calculations of solidsusing density functional theory (DFT). It is based on the full-potential (linearized) augmented plane-wave((L)APW) + local orbitals (lo) method, one among the most accurate schemes for band structure calculations.WIEN2k is an all-electron scheme including relativistic effects and has many features.", "homepage": "http://www.wien2k.at/"}, "Winnowmap": {"clusters": ["doduo", "skitty"], "versions": {"Winnowmap/1.0-GCC-8.3.0": {"clusters": ["doduo", "skitty"]}}, "description": "Winnowmap is a long-read mapping algorithm, and a result of our exploration into superior minimizer sampling techniques.", "homepage": "https://github.com/marbl/Winnowmap"}, "WisecondorX": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"WisecondorX/1.1.6-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "WisecondorX -- an evolved WISECONDOR", "homepage": "https://github.com/CenterForMedicalGeneticsGhent/WisecondorX"}, "WPS": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"WPS/4.1-intel-2019b-dmpar": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "WRF Preprocessing System (WPS) for WRF. The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.", "homepage": "http://www.wrf-model.org"}, "WRF": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"WRF/3.8.0-intel-2019b-dmpar": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "WRF/3.9.1.1-intel-2020b-dmpar": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}, "WRF/4.1.3-intel-2019b-dmpar": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.", "homepage": "http://www.wrf-model.org"}, "xESMF": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"xESMF/0.3.0-foss-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "xESMF/0.3.0-intel-2020b": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "xESMF: Universal Regridder for Geospatial Data", "homepage": "https://xesmf.readthedocs.io"}, "xprop": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"], "versions": {"xprop/1.2.4-GCCcore-9.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "xprop/1.2.5-GCCcore-10.2.0": {"clusters": ["doduo", "donphan", "gallade", "joltik", "skitty"]}}, "description": "The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.", "homepage": "https://www.x.org/wiki/"}, "xproto": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"xproto/7.0.31-GCCcore-8.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}, "xproto/7.0.31-GCCcore-10.3.0": {"clusters": ["doduo", "donphan", "joltik", "skitty"]}}, "description": "X protocol and ancillary headers", "homepage": "https://www.freedesktop.org/wiki/Software/xlibs"}, "YANK": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "versions": {"YANK/0.25.2-intel-2020a-Python-3.8.2": {"clusters": ["doduo", "donphan", "joltik", "skitty"], "extensions": "Cerberus-1.3.2, clusterutils-0.3.1, docopt-0.6.2, latexcodec-2.0.1, lxml-4.6.1, mpiplus-0.0.1, numpydoc-1.1.0, openmoltools-0.8.7, oset-0.1.3, pdbfixer-1.6, pybtex-0.23.0, pybtex-docutils-0.2.2, six-1.15.0, sphinxcontrib-bibtex-1.0.0, YANK-0.25.2"}}, "description": "A GPU-accelerated Python framework for exploring algorithms for alchemical free energy calculations", "homepage": "http://getyank.org/"}, "Triton": {"clusters": ["donphan"], "versions": {"Triton/1.1.1-foss-2022a-CUDA-11.7.0": {"clusters": ["donphan"]}}, "description": "Triton is a language and compiler for parallel programming. It aims to provide aPython-based programming environment for productively writing custom DNN computekernels capable of running at maximal throughput on modern GPU hardware.", "homepage": "https://triton-lang.org/"}, "Boost.Python-NumPy": {"clusters": ["donphan", "joltik"], "versions": {"Boost.Python-NumPy/1.79.0-foss-2022a": {"clusters": ["donphan", "joltik"]}}, "description": "Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.", "homepage": "https://boostorg.github.io/python"}, "FIGARO": {"clusters": ["donphan", "joltik", "skitty"], "versions": {"FIGARO/1.1.2-intel-2020b": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "FIGARO: An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters.", "homepage": "https://github.com/Zymo-Research/figaro"}, "goalign": {"clusters": ["donphan", "joltik"], "versions": {"goalign/0.3.2": {"clusters": ["donphan", "joltik"]}}, "description": "Goalign is a set of command line tools to manipulate multiple alignments.", "homepage": "https://github.com/evolbioinfo/goalign"}, "gotree": {"clusters": ["donphan", "joltik"], "versions": {"gotree/0.4.0": {"clusters": ["donphan", "joltik"]}}, "description": "GoTree is a set of command line tools to manipulate phylogenetic trees.", "homepage": "https://github.com/evolbioinfo/gotree"}, "GraphMap": {"clusters": ["donphan", "joltik", "skitty"], "versions": {"GraphMap/0.5.2-foss-2019b": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "A highly sensitive and accurate mapper for long, error-prone reads", "homepage": "https://github.com/isovic/graphmap"}, "librosa": {"clusters": ["donphan", "joltik", "skitty"], "versions": {"librosa/0.7.2-foss-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "audioread-2.1.8, librosa-0.7.2, resampy-0.2.2, SoundFile-0.10.3.post1"}}, "description": "Python module for audio and music processing", "homepage": "https://librosa.github.io"}, "likwid": {"clusters": ["donphan", "joltik"], "versions": {"likwid/5.0.1-GCCcore-8.3.0": {"clusters": ["donphan", "joltik"]}}, "description": "Likwid stands for Like I knew what I am doing. This project contributes easy to use command line tools for Linux to support programmers in developing high performance multi threaded programs.", "homepage": "https://github.com/RRZE-HPC/likwid"}, "NCL": {"clusters": ["donphan", "joltik", "skitty"], "versions": {"NCL/6.6.2-intel-2019b": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "NCL is an interpreted language designed specifically for scientific data analysis and visualization.", "homepage": "https://www.ncl.ucar.edu"}, "Pychopper": {"clusters": ["donphan", "joltik", "skitty"], "versions": {"Pychopper/2.3.1-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"], "extensions": "edlib-1.3.8.post1, parasail-1.2, Pychopper-2.3.1, sphinx_rtd_theme-0.4.3, tqdm-4.45.0"}}, "description": "A tool to identify, orient, trim and rescue full length cDNA reads.", "homepage": "https://github.com/nanoporetech/pychopper"}, "sbt": {"clusters": ["donphan", "joltik"], "versions": {"sbt/1.3.13-Java-1.8": {"clusters": ["donphan", "joltik"]}}, "description": "sbt is a build tool for Scala, Java, and more.", "homepage": "http://www.scala-sbt.org/"}, "UQTk": {"clusters": ["donphan", "joltik", "skitty"], "versions": {"UQTk/3.1.0-intel-2019b-Python-3.7.4": {"clusters": ["donphan", "joltik", "skitty"]}}, "description": "The UQ Toolkit (UQTk) is a collection of libraries and tools for the quantification of uncertainty in numerical model predictions.", "homepage": "https://www.sandia.gov/UQToolkit/"}, "KaHIP": {"clusters": ["gallade"], "versions": {"KaHIP/3.14-gompi-2022a": {"clusters": ["gallade"]}}, "description": "The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.", "homepage": "https://kahip.github.io/"}, "apex": {"clusters": ["joltik"], "versions": {"apex/20210420-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "A PyTorch Extension: Tools for easy mixed precision and distributed training in Pytorch", "homepage": "https://github.com/nvidia/apex"}, "cell2location": {"clusters": ["joltik"], "versions": {"cell2location/0.05-alpha-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "anndata-0.7.5, annoy-1.17.0, bbknn-1.3.12, cell2location-0.05-alpha, descartes-1.1.0, get_version-2.1, ipykernel-5.3.4, legacy-api-wrap-1.2, loompy-3.0.6, louvain-0.7.0, mizani-0.7.1, natsort-7.1.0, nose-1.3.7, numpy-groupies-0.9.13, opt-einsum-3.3.0, palettable-3.3.0, plotnine-0.7.0, pytoml-0.1.21, scanpy-1.6.0, sinfo-0.3.1, stdlib-list-0.8.0"}}, "description": "Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)", "homepage": "https://github.com/BayraktarLab/cell2location/"}, "CuPy": {"clusters": ["joltik"], "versions": {"CuPy/8.5.0-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "cupy-8.5.0, fastrlock-0.5"}}, "description": "CuPy is an open-source array library accelerated with NVIDIA CUDA.", "homepage": "https://cupy.dev"}, "cuTENSOR": {"clusters": ["joltik"], "versions": {"cuTENSOR/1.2.2.5-CUDA-11.1.1": {"clusters": ["joltik"]}}, "description": "The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations.", "homepage": "https://developer.nvidia.com/cutensor"}, "GenomeWorks": {"clusters": ["joltik"], "versions": {"GenomeWorks/2021.02.2-fosscuda-2020b": {"clusters": ["joltik"], "extensions": "genomeworks-2021.02.2, sortedcollections-2.1.0"}}, "description": "SDK for GPU accelerated genome assembly and analysis", "homepage": "https://github.com/clara-parabricks/GenomeWorks"}, "gpustat": {"clusters": ["joltik"], "versions": {"gpustat/0.6.0-gcccuda-2020b": {"clusters": ["joltik"], "extensions": "blessings-1.7, gpustat-0.6.0, nvidia-ml-py3-7.352.0"}}, "description": "dstat-like utilization monitor for NVIDIA GPUs", "homepage": "https://github.com/wookayin/gpustat"}, "iccifortcuda": {"clusters": ["joltik"], "versions": {"iccifortcuda/2019b": {"clusters": ["joltik"]}, "iccifortcuda/2020a": {"clusters": ["joltik"]}, "iccifortcuda/2020b": {"clusters": ["joltik"]}}, "description": "Intel C, C++ & Fortran compilers with CUDA toolkit", "homepage": "(none)"}, "iimpic": {"clusters": ["joltik"], "versions": {"iimpic/2019b": {"clusters": ["joltik"]}, "iimpic/2020a": {"clusters": ["joltik"]}, "iimpic/2020b": {"clusters": ["joltik"]}}, "description": "Intel C/C++ and Fortran compilers, alongside Intel MPI and CUDA.", "homepage": "(none)"}, "intelcuda": {"clusters": ["joltik"], "versions": {"intelcuda/2019b": {"clusters": ["joltik"]}, "intelcuda/2020a": {"clusters": ["joltik"]}, "intelcuda/2020b": {"clusters": ["joltik"]}}, "description": "Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL, with CUDA toolkit", "homepage": "(none)"}, "pyro-api": {"clusters": ["joltik"], "versions": {"pyro-api/0.1.2-fosscuda-2020b": {"clusters": ["joltik"]}}, "description": "Pyro is a flexible, scalable deep probabilistic programming library built on PyTorch.", "homepage": "https://github.com/pyro-ppl/pyro-api"}, "request": {"clusters": ["joltik"], "versions": {"request/2.88.1-fosscuda-2020b-nodejs-12.19.0": {"clusters": ["joltik"]}}, "description": "Request is designed to be the simplest way possible to make http calls. It supports HTTPS and follows redirects by default.", "homepage": "https://github.com/request/request/"}, "supernova": {"clusters": ["skitty"], "versions": {"supernova/2.0.1": {"clusters": ["skitty"]}}, "description": "Supernova is a software package for de novo assembly from Chromium Linked-Reads that are made from a single whole-genome library from an individual DNA source", "homepage": "https://support.10xgenomics.com/de-novo-assembly/software/overview/latest/welcome"}, "VTune": {"clusters": ["skitty"], "versions": {"VTune/2019_update2": {"clusters": ["skitty"]}}, "description": "Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.", "homepage": "http://software.intel.com/en-us/intel-vtune-amplifier-xe"}}, "time_generated": "Thu, 07 Mar 2024 at 18:35:40 CET"} \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md index fd6b750abadc..b4fafd629a79 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md @@ -6,6 +6,10 @@ hide: ABAQUS ====== + +Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA. + +https://www.simulia.com/products/abaqus_fea.html # Available modules @@ -17,11 +21,11 @@ To start using ABAQUS, load one of these modules using a `module load` command l module load ABAQUS/2023 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ABAQUS/2023|x|x|x|x|x|x|x|x| -|ABAQUS/2022-hotfix-2214|-|x|x|-|x|x|x|x| -|ABAQUS/2022|-|x|x|-|x|x|x|x| -|ABAQUS/2021-hotfix-2132|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ABAQUS/2023|x|x|x|x|x|x| +|ABAQUS/2022-hotfix-2214|-|x|x|-|x|x| +|ABAQUS/2022|-|x|x|-|x|x| +|ABAQUS/2021-hotfix-2132|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md index 37e5d2a0c755..995f1f36dae4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md @@ -6,6 +6,10 @@ hide: ABINIT ====== + +ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure ofsystems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), usingpseudopotentials and a planewave or wavelet basis. + +https://www.abinit.org/ # Available modules @@ -17,10 +21,10 @@ To start using ABINIT, load one of these modules using a `module load` command l module load ABINIT/9.10.3-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ABINIT/9.10.3-intel-2022a|-|-|x|-|x|x|x|x| -|ABINIT/9.4.1-intel-2020b|-|x|x|x|x|x|x|x| -|ABINIT/9.2.1-intel-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ABINIT/9.10.3-intel-2022a|-|-|x|-|x|x| +|ABINIT/9.4.1-intel-2020b|-|x|x|x|x|x| +|ABINIT/9.2.1-intel-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md index d8bd914a69e2..e8f40b730cbf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md @@ -6,6 +6,10 @@ hide: ABRA2 ===== + +Assembly Based ReAligner + +https://github.com/mozack/abra2 # Available modules @@ -17,10 +21,10 @@ To start using ABRA2, load one of these modules using a `module load` command li module load ABRA2/2.23-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ABRA2/2.23-GCC-10.2.0|-|x|x|x|x|x|x|x| -|ABRA2/2.23-GCC-9.3.0|-|x|x|-|x|x|x|x| -|ABRA2/2.22-iccifort-2019.5.281|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ABRA2/2.23-GCC-10.2.0|-|x|x|x|x|x| +|ABRA2/2.23-GCC-9.3.0|-|x|x|-|x|x| +|ABRA2/2.22-iccifort-2019.5.281|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md index 9e6709194fd3..369e0c6a05a5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md @@ -6,6 +6,10 @@ hide: ABRicate ======== + +Mass screening of contigs for antimicrobial and virulence genes + +https://github.com/tseemann/abricate # Available modules @@ -17,8 +21,8 @@ To start using ABRicate, load one of these modules using a `module load` command module load ABRicate/0.9.9-gompi-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ABRicate/0.9.9-gompi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ABRicate/0.9.9-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md index 38420b240f6f..00647f4af4d5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md @@ -6,6 +6,10 @@ hide: ABySS ===== + +Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler + +https://www.bcgsc.ca/platform/bioinfo/software/abyss # Available modules @@ -14,11 +18,12 @@ The overview below shows which ABySS installations are available per HPC-UGent T To start using ABySS, load one of these modules using a `module load` command like: ```shell -module load ABySS/2.1.5-foss-2019b +module load ABySS/2.3.7-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ABySS/2.1.5-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ABySS/2.3.7-foss-2023a|x|x|x|x|x|x| +|ABySS/2.1.5-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md index 2874a0d71e44..14f4f131e264 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md @@ -6,6 +6,10 @@ hide: ACTC ==== + +ACTC converts independent triangles into triangle strips or fans. + +https://sourceforge.net/projects/actc # Available modules @@ -17,8 +21,8 @@ To start using ACTC, load one of these modules using a `module load` command lik module load ACTC/1.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ACTC/1.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ACTC/1.1-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md index 1189d890fd56..814d3dda537f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md @@ -6,6 +6,10 @@ hide: ADMIXTURE ========= + +ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm. + +https://dalexander.github.io/admixture/ # Available modules @@ -17,8 +21,8 @@ To start using ADMIXTURE, load one of these modules using a `module load` comman module load ADMIXTURE/1.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ADMIXTURE/1.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ADMIXTURE/1.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AICSImageIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AICSImageIO.md new file mode 100644 index 000000000000..6144a487c1b8 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AICSImageIO.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +AICSImageIO +=========== + + +Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python + +https://github.com/AllenCellModeling/aicsimageio +# Available modules + + +The overview below shows which AICSImageIO installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using AICSImageIO, load one of these modules using a `module load` command like: + +```shell +module load AICSImageIO/4.14.0-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AICSImageIO/4.14.0-foss-2022a|x|x|x|x|x|x| + + +### AICSImageIO/4.14.0-foss-2022a + +This is a list of extensions included in the module: + +%(namelower)s-4.14.0, elementpath-4.1.5, fsspec-2023.6.0, ome-zarr-0.8.3, ome_types-0.4.3, pydantic_compat-0.1.2, resource_backed_dask_array-0.1.0, xmlschema-2.5.0, xsdata-23.8 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md index e2b063b92d18..6b70faef08cb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md @@ -6,6 +6,10 @@ hide: AMAPVox ======= + +LiDAR data voxelisation software + +https://amap-dev.cirad.fr/projects/amapvox # Available modules @@ -17,8 +21,8 @@ To start using AMAPVox, load one of these modules using a `module load` command module load AMAPVox/1.9.4-Java-11 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AMAPVox/1.9.4-Java-11|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AMAPVox/1.9.4-Java-11|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMICA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMICA.md new file mode 100644 index 000000000000..9607097de9bb --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AMICA.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +AMICA +===== + + +Code for AMICA: Adaptive Mixture ICA with shared components + +https://github.com/sccn/amica +# Available modules + + +The overview below shows which AMICA installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using AMICA, load one of these modules using a `module load` command like: + +```shell +module load AMICA/2024.1.19-intel-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AMICA/2024.1.19-intel-2023a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md index d6bb41cd10fc..ec23507f9791 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md @@ -6,6 +6,10 @@ hide: AMOS ==== + +The AMOS consortium is committed to the development of open-source whole genome assembly software + +http://amos.sourceforge.net # Available modules @@ -14,11 +18,12 @@ The overview below shows which AMOS installations are available per HPC-UGent Ti To start using AMOS, load one of these modules using a `module load` command like: ```shell -module load AMOS/3.1.0-foss-2021b +module load AMOS/3.1.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AMOS/3.1.0-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AMOS/3.1.0-foss-2023a|x|x|x|x|x|x| +|AMOS/3.1.0-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md index 1a944db9a292..e328338aaa17 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md @@ -6,6 +6,10 @@ hide: AMPtk ===== + +AMPtk is a series of scripts to process NGS amplicon data using USEARCH and VSEARCH, it can also beused to process any NGS amplicon data and includes databases setup for analysis of fungal ITS, fungal LSU, bacterial16S, and insect COI amplicons. + +https://amptk.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using AMPtk, load one of these modules using a `module load` command li module load AMPtk/1.5.4-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AMPtk/1.5.4-foss-2021b|x|x|x|-|x|x| + + +### AMPtk/1.5.4-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AMPtk/1.5.4-foss-2021b|x|x|x|-|x|x|x|x| +amptk-1.5.4, distro-1.7.0, natsort-8.1.0, pyfastx-0.8.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md index bb41b5578e87..86a32226355c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md @@ -6,6 +6,10 @@ hide: ANTLR ===== + +ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions. + +https://www.antlr2.org/ # Available modules @@ -17,9 +21,9 @@ To start using ANTLR, load one of these modules using a `module load` command li module load ANTLR/2.7.7-GCCcore-10.3.0-Java-11 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ANTLR/2.7.7-GCCcore-10.3.0-Java-11|-|x|x|-|x|x|x|x| -|ANTLR/2.7.7-GCCcore-8.3.0-Java-11|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ANTLR/2.7.7-GCCcore-10.3.0-Java-11|-|x|x|-|x|x| +|ANTLR/2.7.7-GCCcore-8.3.0-Java-11|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md index 6e53e6a46976..f2810bf259db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md @@ -6,6 +6,10 @@ hide: ANTs ==== + +ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualizing multidimensional data. + +https://stnava.github.io/ANTs/ # Available modules @@ -17,8 +21,8 @@ To start using ANTs, load one of these modules using a `module load` command lik module load ANTs/2.3.2-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ANTs/2.3.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ANTs/2.3.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md b/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md index b0b4a8872a90..7febafd26985 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md @@ -6,6 +6,10 @@ hide: APR-util ======== + +Apache Portable Runtime (APR) util libraries. + +https://apr.apache.org/ # Available modules @@ -17,8 +21,8 @@ To start using APR-util, load one of these modules using a `module load` command module load APR-util/1.6.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|APR-util/1.6.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|APR-util/1.6.1-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/APR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/APR.md index b16f0699c378..1f1a76bb6eff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/APR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/APR.md @@ -6,6 +6,10 @@ hide: APR === + +Apache Portable Runtime (APR) libraries. + +https://apr.apache.org/ # Available modules @@ -17,8 +21,8 @@ To start using APR, load one of these modules using a `module load` command like module load APR/1.7.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|APR/1.7.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|APR/1.7.0-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ARAGORN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ARAGORN.md index f6a6283a99ef..ac61701b10de 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ARAGORN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ARAGORN.md @@ -6,6 +6,10 @@ hide: ARAGORN ======= + +a program to detect tRNA genes and tmRNA genes in nucleotide sequences + +http://mbio-serv2.mbioekol.lu.se/ARAGORN/ # Available modules @@ -17,9 +21,9 @@ To start using ARAGORN, load one of these modules using a `module load` command module load ARAGORN/1.2.41-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ARAGORN/1.2.41-foss-2021b|x|x|x|-|x|x|x|x| -|ARAGORN/1.2.38-iccifort-2019.5.281|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ARAGORN/1.2.41-foss-2021b|x|x|x|-|x|x| +|ARAGORN/1.2.38-iccifort-2019.5.281|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ASCAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ASCAT.md index 704dc98affc9..79a098878f97 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ASCAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ASCAT.md @@ -6,6 +6,10 @@ hide: ASCAT ===== + +ASCAT is a method to derive copy number profiles of tumor cells, accounting for normal cell admixture and tumor aneuploidy. + +https://github.com/VanLoo-lab/ascat # Available modules @@ -14,11 +18,12 @@ The overview below shows which ASCAT installations are available per HPC-UGent T To start using ASCAT, load one of these modules using a `module load` command like: ```shell -module load ASCAT/3.1.2-foss-2022a-R-4.2.1 +module load ASCAT/3.1.2-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ASCAT/3.1.2-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ASCAT/3.1.2-foss-2022b-R-4.2.2|x|x|x|x|x|x| +|ASCAT/3.1.2-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ASE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ASE.md index 94adc190651c..75d30c9131fc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ASE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ASE.md @@ -6,6 +6,10 @@ hide: ASE === + +ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language.From version 3.20.1 we also include the ase-ext package, it contains optional reimplementationsin C of functions in ASE. ASE uses it automatically when installed. + +https://wiki.fysik.dtu.dk/ase # Available modules @@ -17,19 +21,92 @@ To start using ASE, load one of these modules using a `module load` command like module load ASE/3.22.1-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ASE/3.22.1-intel-2022a|x|x|x|x|x|x|x|x| -|ASE/3.22.1-intel-2021b|x|x|x|-|x|x|x|x| -|ASE/3.22.1-gomkl-2021a|x|x|x|x|x|x|x|x| -|ASE/3.22.1-foss-2022a|x|x|x|x|x|x|x|x| -|ASE/3.22.1-foss-2021b|x|x|x|-|x|x|x|x| -|ASE/3.21.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|ASE/3.21.1-foss-2020b|-|-|x|x|x|-|-|-| -|ASE/3.20.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|ASE/3.20.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|ASE/3.20.1-foss-2020b|-|x|x|x|x|x|x|x| -|ASE/3.19.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|ASE/3.19.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ASE/3.22.1-intel-2022a|x|x|x|x|x|x| +|ASE/3.22.1-intel-2021b|x|x|x|-|x|x| +|ASE/3.22.1-gomkl-2021a|x|x|x|x|x|x| +|ASE/3.22.1-foss-2022a|x|x|x|x|x|x| +|ASE/3.22.1-foss-2021b|x|x|x|-|x|x| +|ASE/3.21.1-fosscuda-2020b|-|-|-|-|x|-| +|ASE/3.21.1-foss-2020b|-|-|x|x|x|-| +|ASE/3.20.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|ASE/3.20.1-fosscuda-2020b|-|-|-|-|x|-| +|ASE/3.20.1-foss-2020b|-|x|x|x|x|x| +|ASE/3.19.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|ASE/3.19.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### ASE/3.22.1-intel-2022a + +This is a list of extensions included in the module: + +ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.8.2 + +### ASE/3.22.1-intel-2021b + +This is a list of extensions included in the module: + +ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.6.1 + +### ASE/3.22.1-gomkl-2021a + +This is a list of extensions included in the module: + +ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.6.1 + +### ASE/3.22.1-foss-2022a + +This is a list of extensions included in the module: + +ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.8.2 + +### ASE/3.22.1-foss-2021b + +This is a list of extensions included in the module: + +ase-3.22.1, ase-ext-20.9.0, pytest-mock-3.6.1 + +### ASE/3.21.1-fosscuda-2020b + +This is a list of extensions included in the module: + +ase-3.21.1, ase-ext-20.9.0 + +### ASE/3.21.1-foss-2020b + +This is a list of extensions included in the module: + +ase-3.21.1, ase-ext-20.9.0 + +### ASE/3.20.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +ase-3.20.1, click-7.1.2, Flask-1.1.2, itsdangerous-1.1.0, Jinja2-2.11.2, MarkupSafe-1.1.1, Werkzeug-1.0.1 + +### ASE/3.20.1-fosscuda-2020b + +This is a list of extensions included in the module: + +ase-3.20.1, ase-ext-20.9.0 + +### ASE/3.20.1-foss-2020b + +This is a list of extensions included in the module: + +ase-3.20.1, ase-ext-20.9.0 + +### ASE/3.19.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +ase-3.19.0, Click-7.0, Flask-1.1.1, itsdangerous-1.1.0, Jinja2-2.10.3, MarkupSafe-1.1.1, Werkzeug-0.16.0 + +### ASE/3.19.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +ase-3.19.0, Click-7.0, Flask-1.1.1, itsdangerous-1.1.0, Jinja2-2.10.3, MarkupSafe-1.1.1, Werkzeug-0.16.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ATK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ATK.md index 150cb11e2a04..3c9a4817ac14 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ATK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ATK.md @@ -6,6 +6,10 @@ hide: ATK === + +ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications. + +https://developer.gnome.org/atk/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which ATK installations are available per HPC-UGent Tie To start using ATK, load one of these modules using a `module load` command like: ```shell -module load ATK/2.38.0-GCCcore-12.2.0 +module load ATK/2.38.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ATK/2.38.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|ATK/2.38.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|ATK/2.36.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|ATK/2.36.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|ATK/2.36.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|ATK/2.34.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ATK/2.38.0-GCCcore-12.3.0|x|x|x|x|x|x| +|ATK/2.38.0-GCCcore-12.2.0|x|x|x|x|x|x| +|ATK/2.38.0-GCCcore-11.3.0|x|x|x|x|x|x| +|ATK/2.36.0-GCCcore-11.2.0|x|x|x|x|x|x| +|ATK/2.36.0-GCCcore-10.3.0|x|x|x|-|x|x| +|ATK/2.36.0-GCCcore-10.2.0|x|x|x|x|x|x| +|ATK/2.34.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AUGUSTUS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AUGUSTUS.md index 188322aef903..9d69b51210a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AUGUSTUS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AUGUSTUS.md @@ -6,6 +6,10 @@ hide: AUGUSTUS ======== + +AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences + +http://bioinf.uni-greifswald.de/augustus/ # Available modules @@ -17,11 +21,11 @@ To start using AUGUSTUS, load one of these modules using a `module load` command module load AUGUSTUS/3.4.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AUGUSTUS/3.4.0-foss-2021b|x|x|x|x|x|x|x|x| -|AUGUSTUS/3.4.0-foss-2020b|x|x|x|x|x|x|x|x| -|AUGUSTUS/3.3.3-intel-2019b|-|x|x|-|x|x|-|x| -|AUGUSTUS/3.3.3-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AUGUSTUS/3.4.0-foss-2021b|x|x|x|x|x|x| +|AUGUSTUS/3.4.0-foss-2020b|x|x|x|x|x|x| +|AUGUSTUS/3.3.3-intel-2019b|-|x|x|-|x|x| +|AUGUSTUS/3.3.3-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Abseil.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Abseil.md new file mode 100644 index 000000000000..4748e75c4a1e --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Abseil.md @@ -0,0 +1,29 @@ +--- +hide: + - toc +--- + +Abseil +====== + + +Abseil is an open-source collection of C++ library code designed to augment theC++ standard library. The Abseil library code is collected from Google's ownC++ code base, has been extensively tested and used in production, and is thesame code we depend on in our daily coding lives. + +https://abseil.io/ +# Available modules + + +The overview below shows which Abseil installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Abseil, load one of these modules using a `module load` command like: + +```shell +module load Abseil/20230125.3-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Abseil/20230125.3-GCCcore-12.3.0|x|x|x|x|x|x| +|Abseil/20230125.2-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AdapterRemoval.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AdapterRemoval.md index 7917c7f18cd3..d35c836c9153 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AdapterRemoval.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AdapterRemoval.md @@ -6,6 +6,10 @@ hide: AdapterRemoval ============== + +AdapterRemoval searches for and removes remnant adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. + +https://github.com/MikkelSchubert/adapterremoval # Available modules @@ -17,8 +21,8 @@ To start using AdapterRemoval, load one of these modules using a `module load` c module load AdapterRemoval/2.3.3-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AdapterRemoval/2.3.3-GCC-11.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AdapterRemoval/2.3.3-GCC-11.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Albumentations.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Albumentations.md index 93bb3b601c0e..531aad5b0ab4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Albumentations.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Albumentations.md @@ -6,6 +6,10 @@ hide: Albumentations ============== + +Albumentations is a Python library for fast and flexible image augmentations + +https://albumentations.ai # Available modules @@ -17,9 +21,22 @@ To start using Albumentations, load one of these modules using a `module load` c module load Albumentations/1.1.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Albumentations/1.1.0-foss-2021b|x|x|x|-|x|x| +|Albumentations/1.1.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### Albumentations/1.1.0-foss-2021b + +This is a list of extensions included in the module: + +albumentations-1.1.0, qudida-0.0.4 + +### Albumentations/1.1.0-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Albumentations/1.1.0-foss-2021b|x|x|x|-|x|x|x|x| -|Albumentations/1.1.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| +albumentations-1.1.0, qudida-0.0.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaFold.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaFold.md index 4b0cc439c36b..0dbac149a26c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaFold.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaFold.md @@ -6,6 +6,10 @@ hide: AlphaFold ========= + +AlphaFold can predict protein structures with atomic accuracy even where nosimilar structure is known.This package of AlphaFold contains patches for ColabFold. + +https://github.com/sokrypton/alphafold # Available modules @@ -17,19 +21,92 @@ To start using AlphaFold, load one of these modules using a `module load` comman module load AlphaFold/2.3.4-foss-2022a-ColabFold ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AlphaFold/2.3.4-foss-2022a-ColabFold|-|-|x|-|x|-|-|-| -|AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold|x|-|-|-|x|-|-|-| -|AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|AlphaFold/2.3.1-foss-2022a|x|x|x|x|x|x|x|x| -|AlphaFold/2.3.0-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-|-|-| -|AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|AlphaFold/2.2.2-foss-2021a|-|x|x|-|x|x|x|x| -|AlphaFold/2.1.2-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|AlphaFold/2.1.2-foss-2021a|-|x|x|-|x|x|x|x| -|AlphaFold/2.1.1-fosscuda-2020b|x|-|-|-|x|-|-|-| -|AlphaFold/2.0.0-fosscuda-2020b|x|-|-|-|x|-|-|-| -|AlphaFold/2.0.0-foss-2020b|-|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AlphaFold/2.3.4-foss-2022a-ColabFold|-|-|x|-|x|-| +|AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold|x|-|-|-|x|-| +|AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|AlphaFold/2.3.1-foss-2022a|x|x|x|x|x|x| +|AlphaFold/2.3.0-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-| +|AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|AlphaFold/2.2.2-foss-2021a|-|x|x|-|x|x| +|AlphaFold/2.1.2-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|AlphaFold/2.1.2-foss-2021a|-|x|x|-|x|x| +|AlphaFold/2.1.1-fosscuda-2020b|x|-|-|-|x|-| +|AlphaFold/2.0.0-fosscuda-2020b|x|-|-|-|x|-| +|AlphaFold/2.0.0-foss-2020b|-|x|x|x|x|x| + + +### AlphaFold/2.3.4-foss-2022a-ColabFold + +This is a list of extensions included in the module: + +chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1 + +### AlphaFold/2.3.4-foss-2022a-CUDA-11.7.0-ColabFold + +This is a list of extensions included in the module: + +chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1 + +### AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1 + +### AlphaFold/2.3.1-foss-2022a + +This is a list of extensions included in the module: + +chex-0.1.6, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.8, docker-6.0.1, immutabledict-2.2.3, jmp-0.0.4, ml_collections-0.1.1, PDBFixer-1.8.1, tabulate-0.9.0, toolz-0.12.0, websocket-client-1.5.1 + +### AlphaFold/2.3.0-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +chex-0.1.5, contextlib2-21.6.0, dm-haiku-0.0.9, dm-tree-0.1.7, docker-5.0.3, immutabledict-2.2.1, jmp-0.0.2, ml_collections-0.1.1, PDBFixer-1.7, tabulate-0.8.10, toolz-0.11.2, websocket-client-1.3.3 + +### AlphaFold/2.2.2-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +chex-0.1.3, contextlib2-21.6.0, dm-haiku-0.0.6, dm-tree-0.1.7, docker-5.0.3, immutabledict-2.2.1, jmp-0.0.2, ml_collections-0.1.1, PDBFixer-1.7, tabulate-0.8.10, toolz-0.11.2, websocket-client-1.3.3 + +### AlphaFold/2.2.2-foss-2021a + +This is a list of extensions included in the module: + +chex-0.1.3, contextlib2-21.6.0, dm-haiku-0.0.6, dm-tree-0.1.7, docker-5.0.3, immutabledict-2.2.1, jmp-0.0.2, ml_collections-0.1.1, PDBFixer-1.7, tabulate-0.8.10, toolz-0.11.2, websocket-client-1.3.3 + +### AlphaFold/2.1.2-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1 + +### AlphaFold/2.1.2-foss-2021a + +This is a list of extensions included in the module: + +chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1 + +### AlphaFold/2.1.1-fosscuda-2020b + +This is a list of extensions included in the module: + +chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1 + +### AlphaFold/2.0.0-fosscuda-2020b + +This is a list of extensions included in the module: + +chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1 + +### AlphaFold/2.0.0-foss-2020b + +This is a list of extensions included in the module: + +chex-0.0.8, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, docker-5.0.0, immutabledict-2.1.0, ml_collections-0.1.0, PDBFixer-1.7, tabulate-0.8.9, toolz-0.11.1, websocket-client-1.2.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaPulldown.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaPulldown.md index 74a6a30d0cb3..bdb55ba6efab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaPulldown.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AlphaPulldown.md @@ -6,6 +6,10 @@ hide: AlphaPulldown ============= + +AlphaPulldown is a Python package that streamlines protein-proteininteraction screens and high-throughput modelling of higher-order oligomers using AlphaFold-Multimer + +https://github.com/KosinskiLab/AlphaPulldown # Available modules @@ -17,10 +21,29 @@ To start using AlphaPulldown, load one of these modules using a `module load` co module load AlphaPulldown/0.30.7-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AlphaPulldown/0.30.7-foss-2022a|-|-|x|-|x|-| +|AlphaPulldown/0.30.4-fosscuda-2020b|x|-|-|-|x|-| +|AlphaPulldown/0.30.4-foss-2020b|x|x|x|x|x|x| + + +### AlphaPulldown/0.30.7-foss-2022a + +This is a list of extensions included in the module: + +AlphaPulldown-0.30.7, importlib-resources-5.13.0 + +### AlphaPulldown/0.30.4-fosscuda-2020b + +This is a list of extensions included in the module: + +AlphaPulldown-0.30.4, contextlib2-21.6.0, dm-haiku-0.0.4, importlib-resources-5.12.0, ml-collections-0.1.1, PDBFixer-1.7, py3Dmol-2.0.1.post1, toolz-0.11.1 + +### AlphaPulldown/0.30.4-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AlphaPulldown/0.30.7-foss-2022a|-|-|x|-|x|-|-|-| -|AlphaPulldown/0.30.4-fosscuda-2020b|x|-|-|-|x|-|-|-| -|AlphaPulldown/0.30.4-foss-2020b|x|x|x|x|x|x|x|x| +AlphaPulldown-0.30.4, contextlib2-21.6.0, dm-haiku-0.0.4, importlib-resources-5.12.0, ml-collections-0.1.1, PDBFixer-1.7, py3Dmol-2.0.1.post1, toolz-0.11.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Altair-EDEM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Altair-EDEM.md index d425c1ef6c4b..05d6a029d04e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Altair-EDEM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Altair-EDEM.md @@ -6,6 +6,10 @@ hide: Altair-EDEM =========== + +EDEM is high-performance software for bulk and granular material simulation. + +https://www.altair.com/edem # Available modules @@ -17,8 +21,8 @@ To start using Altair-EDEM, load one of these modules using a `module load` comm module load Altair-EDEM/2021.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Altair-EDEM/2021.2|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Altair-EDEM/2021.2|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Amber.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Amber.md new file mode 100644 index 000000000000..62767c7a4c95 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Amber.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Amber +===== + + +Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction. + +https://ambermd.org/amber.html +# Available modules + + +The overview below shows which Amber installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Amber, load one of these modules using a `module load` command like: + +```shell +module load Amber/22.4-foss-2022a-AmberTools-22.5-CUDA-11.7.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Amber/22.4-foss-2022a-AmberTools-22.5-CUDA-11.7.0|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AmberMini.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AmberMini.md index 13c6c2fbd794..3bf18c29363d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AmberMini.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AmberMini.md @@ -6,6 +6,10 @@ hide: AmberMini ========= + +A stripped-down set of just antechamber, sqm, and tleap. + +https://github.com/choderalab/ambermini # Available modules @@ -17,8 +21,8 @@ To start using AmberMini, load one of these modules using a `module load` comman module load AmberMini/16.16.0-intel-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AmberMini/16.16.0-intel-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AmberMini/16.16.0-intel-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AmberTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AmberTools.md index aa22c123f2f1..f966648615b2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AmberTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AmberTools.md @@ -6,6 +6,10 @@ hide: AmberTools ========== + +AmberTools consists of several independently developed packages that work well by themselves, and with Amber itself. The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalized Born solvent models. + +https://ambermd.org/ # Available modules @@ -17,8 +21,8 @@ To start using AmberTools, load one of these modules using a `module load` comma module load AmberTools/20-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AmberTools/20-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AmberTools/20-intel-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Anaconda3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Anaconda3.md index d44f078c8f3d..aa847ce846d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Anaconda3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Anaconda3.md @@ -6,6 +6,10 @@ hide: Anaconda3 ========= + +Built to complement the rich, open source Python community,the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. + +https://www.anaconda.com # Available modules @@ -17,11 +21,11 @@ To start using Anaconda3, load one of these modules using a `module load` comman module load Anaconda3/2023.03-1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Anaconda3/2023.03-1|x|x|x|x|x|x|x|x| -|Anaconda3/2020.11|-|x|x|-|x|-|x|-| -|Anaconda3/2020.07|-|x|-|-|-|-|-|-| -|Anaconda3/2020.02|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Anaconda3/2023.03-1|x|x|x|x|x|x| +|Anaconda3/2020.11|-|x|x|-|x|-| +|Anaconda3/2020.07|-|x|-|-|-|-| +|Anaconda3/2020.02|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Annocript.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Annocript.md index 5a6c42d5cb82..ad88cc621b5f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Annocript.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Annocript.md @@ -6,6 +6,10 @@ hide: Annocript ========= + +Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes blast analysis with UniProt, NCBI Conserved Domain Database and Nucleotide division adding also annotations from Gene Ontology, the Enzyme Commission and UniPathways. Annocript also gives information about the longest ORF and the non-coding potential using external software. Annocript is also capable to identify putative long non-coding RNAs by using an heuristic based on homology and sequence features. + +https://github.com/frankMusacchia/Annocript # Available modules @@ -17,8 +21,15 @@ To start using Annocript, load one of these modules using a `module load` comman module load Annocript/2.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Annocript/2.0-foss-2022a|x|x|x|x|x|x| + + +### Annocript/2.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Annocript/2.0-foss-2022a|x|x|x|x|x|x|x|x| +CGI-4.43 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ArchR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ArchR.md index b49e5739df13..fb5be8891e2c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ArchR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ArchR.md @@ -6,6 +6,10 @@ hide: ArchR ===== + +ArchR is a full-featured R package for processing and analyzing single-cell ATAC-seq data. + +https://www.archrproject.com # Available modules @@ -14,11 +18,12 @@ The overview below shows which ArchR installations are available per HPC-UGent T To start using ArchR, load one of these modules using a `module load` command like: ```shell -module load ArchR/1.0.1-foss-2021b-R-4.1.2 +module load ArchR/1.0.2-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ArchR/1.0.1-foss-2021b-R-4.1.2|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ArchR/1.0.2-foss-2023a-R-4.3.2|x|x|x|x|x|x| +|ArchR/1.0.1-foss-2021b-R-4.1.2|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Archive-Zip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Archive-Zip.md index d09e20488ffc..357ac47b02c6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Archive-Zip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Archive-Zip.md @@ -6,6 +6,10 @@ hide: Archive-Zip =========== + +Provide an interface to ZIP archive files. + +https://metacpan.org/pod/Archive::Zip # Available modules @@ -17,10 +21,10 @@ To start using Archive-Zip, load one of these modules using a `module load` comm module load Archive-Zip/1.68-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Archive-Zip/1.68-GCCcore-11.3.0|x|x|x|-|x|x|x|x| -|Archive-Zip/1.68-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Archive-Zip/1.68-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Archive-Zip/1.68-GCCcore-11.3.0|x|x|x|-|x|x| +|Archive-Zip/1.68-GCCcore-11.2.0|x|x|x|-|x|x| +|Archive-Zip/1.68-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Arlequin.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Arlequin.md index fa8f8ec3121b..9acfa10d69a3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Arlequin.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Arlequin.md @@ -6,6 +6,10 @@ hide: Arlequin ======== + +Arlequin: An Integrated Software for Population Genetics Data Analysis + +http://cmpg.unibe.ch/software/arlequin35/Arlequin35.html # Available modules @@ -17,8 +21,8 @@ To start using Arlequin, load one of these modules using a `module load` command module load Arlequin/3.5.2.2-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Arlequin/3.5.2.2-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Arlequin/3.5.2.2-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Armadillo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Armadillo.md index 8035d81db7b8..cb98e29834d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Armadillo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Armadillo.md @@ -6,6 +6,10 @@ hide: Armadillo ========= + +Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. + +https://arma.sourceforge.net/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which Armadillo installations are available per HPC-UGe To start using Armadillo, load one of these modules using a `module load` command like: ```shell -module load Armadillo/11.4.3-foss-2022b +module load Armadillo/12.6.2-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Armadillo/11.4.3-foss-2022b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Armadillo/12.6.2-foss-2023a|x|x|x|x|x|x| +|Armadillo/11.4.3-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Arrow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Arrow.md index 0c5b0b102e52..15f678711496 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Arrow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Arrow.md @@ -6,6 +6,10 @@ hide: Arrow ===== + +Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data. + +https://arrow.apache.org # Available modules @@ -14,19 +18,20 @@ The overview below shows which Arrow installations are available per HPC-UGent T To start using Arrow, load one of these modules using a `module load` command like: ```shell -module load Arrow/11.0.0-gfbf-2022b +module load Arrow/14.0.1-gfbf-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Arrow/11.0.0-gfbf-2022b|x|x|x|x|x|x|x|x| -|Arrow/8.0.0-foss-2022a|x|x|x|x|x|x|x|x| -|Arrow/6.0.0-foss-2021b|x|x|x|x|x|x|x|x| -|Arrow/6.0.0-foss-2021a|-|x|x|-|x|x|x|x| -|Arrow/0.17.1-intel-2020b|-|x|x|-|x|x|x|x| -|Arrow/0.17.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|Arrow/0.17.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|Arrow/0.17.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|Arrow/0.16.0-intel-2019b-Python-3.7.4|-|x|x|-|x|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Arrow/14.0.1-gfbf-2023a|x|x|x|x|x|x| +|Arrow/11.0.0-gfbf-2022b|x|x|x|x|x|x| +|Arrow/8.0.0-foss-2022a|x|x|x|x|x|x| +|Arrow/6.0.0-foss-2021b|x|x|x|x|x|x| +|Arrow/6.0.0-foss-2021a|-|x|x|-|x|x| +|Arrow/0.17.1-intel-2020b|-|x|x|-|x|x| +|Arrow/0.17.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|Arrow/0.17.1-fosscuda-2020b|-|-|-|-|x|-| +|Arrow/0.17.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|Arrow/0.16.0-intel-2019b-Python-3.7.4|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ArviZ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ArviZ.md index a0821381229d..8a13e8f9fddb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ArviZ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ArviZ.md @@ -6,6 +6,10 @@ hide: ArviZ ===== + +Exploratory analysis of Bayesian models with Python + +https://github.com/arviz-devs/arviz # Available modules @@ -14,14 +18,29 @@ The overview below shows which ArviZ installations are available per HPC-UGent T To start using ArviZ, load one of these modules using a `module load` command like: ```shell -module load ArviZ/0.11.4-intel-2021b +module load ArviZ/0.16.1-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ArviZ/0.16.1-foss-2023a|x|x|x|x|x|x| +|ArviZ/0.12.1-foss-2021a|x|x|x|x|x|x| +|ArviZ/0.11.4-intel-2021b|x|x|x|-|x|x| +|ArviZ/0.11.1-intel-2020b|-|x|x|-|x|x| +|ArviZ/0.7.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|ArviZ/0.7.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### ArviZ/0.16.1-foss-2023a + +This is a list of extensions included in the module: + +ArviZ-0.16.1, xarray-einstats-0.6.0 + +### ArviZ/0.12.1-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ArviZ/0.11.4-intel-2021b|x|x|x|-|x|x|x|x| -|ArviZ/0.11.1-intel-2020b|-|x|x|-|x|x|x|x| -|ArviZ/0.7.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|ArviZ/0.7.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +ArviZ-0.12.1, xarray-einstats-0.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Aspera-CLI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Aspera-CLI.md index 0661799dca50..bdc35837d879 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Aspera-CLI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Aspera-CLI.md @@ -6,6 +6,10 @@ hide: Aspera-CLI ========== + +IBM Aspera Command-Line Interface (the Aspera CLI) isa collection of Aspera tools for performing high-speed, secure datatransfers from the command line. The Aspera CLI is for users andorganizations who want to automate their transfer workflows. + +https://asperasoft.com # Available modules @@ -17,8 +21,8 @@ To start using Aspera-CLI, load one of these modules using a `module load` comma module load Aspera-CLI/3.9.6.1467.159c5b1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Aspera-CLI/3.9.6.1467.159c5b1|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Aspera-CLI/3.9.6.1467.159c5b1|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoDock-Vina.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoDock-Vina.md index e72c85345ea1..c2a301cb8e65 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoDock-Vina.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoDock-Vina.md @@ -6,6 +6,10 @@ hide: AutoDock-Vina ============= + +AutoDock Vina is an open-source program for doing molecular docking. + +https://vina.scripps.edu/ # Available modules @@ -17,8 +21,15 @@ To start using AutoDock-Vina, load one of these modules using a `module load` co module load AutoDock-Vina/1.2.3-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AutoDock-Vina/1.2.3-foss-2021b|x|x|x|-|x|x| + + +### AutoDock-Vina/1.2.3-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AutoDock-Vina/1.2.3-foss-2021b|x|x|x|-|x|x|x|x| +vina-1.2.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoGeneS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoGeneS.md index c703d42a79a5..85d399d0e6cb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoGeneS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoGeneS.md @@ -6,6 +6,10 @@ hide: AutoGeneS ========= + +AutoGeneS automatically extracts informative genes and reveals the cellular heterogeneityof bulk RNA samples. + +https://github.com/theislab/AutoGeneS # Available modules @@ -17,8 +21,15 @@ To start using AutoGeneS, load one of these modules using a `module load` comman module load AutoGeneS/1.0.4-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AutoGeneS/1.0.4-foss-2020b|-|x|x|x|x|x| + + +### AutoGeneS/1.0.4-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AutoGeneS/1.0.4-foss-2020b|-|x|x|x|x|x|x|x| +anndata-0.7.6, autogenes-1.0.4, cachetools-4.2.2, natsort-7.1.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoMap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoMap.md index 7021f87b2260..6665f512406f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/AutoMap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/AutoMap.md @@ -6,6 +6,10 @@ hide: AutoMap ======= + +Tool to find regions of homozygosity (ROHs) from sequencing data. + +https://github.com/mquinodo/AutoMap # Available modules @@ -17,8 +21,8 @@ To start using AutoMap, load one of these modules using a `module load` command module load AutoMap/1.0-foss-2019b-20200324 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|AutoMap/1.0-foss-2019b-20200324|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|AutoMap/1.0-foss-2019b-20200324|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Autoconf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Autoconf.md index 0fe470fe5a98..d1798c0d9fc0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Autoconf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Autoconf.md @@ -6,6 +6,10 @@ hide: Autoconf ======== + +Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls. + +https://www.gnu.org/software/autoconf/ # Available modules @@ -14,21 +18,21 @@ The overview below shows which Autoconf installations are available per HPC-UGen To start using Autoconf, load one of these modules using a `module load` command like: ```shell -module load Autoconf/2.71-GCCcore-12.3.0 +module load Autoconf/2.71-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Autoconf/2.71-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Autoconf/2.71-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Autoconf/2.71-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Autoconf/2.71-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Autoconf/2.71-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Autoconf/2.71|x|x|x|x|x|x|x|x| -|Autoconf/2.69-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Autoconf/2.69-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Autoconf/2.69-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|Autoconf/2.69-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|Autoconf/2.69|-|-|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Autoconf/2.71-GCCcore-13.2.0|x|x|x|x|x|x| +|Autoconf/2.71-GCCcore-12.3.0|x|x|x|x|x|x| +|Autoconf/2.71-GCCcore-12.2.0|x|x|x|x|x|x| +|Autoconf/2.71-GCCcore-11.3.0|x|x|x|x|x|x| +|Autoconf/2.71-GCCcore-11.2.0|x|x|x|x|x|x| +|Autoconf/2.71-GCCcore-10.3.0|x|x|x|x|x|x| +|Autoconf/2.71|x|x|x|x|x|x| +|Autoconf/2.69-GCCcore-10.2.0|x|x|x|x|x|x| +|Autoconf/2.69-GCCcore-9.3.0|x|x|x|x|x|x| +|Autoconf/2.69-GCCcore-8.3.0|x|x|x|x|x|x| +|Autoconf/2.69-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Automake.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Automake.md index c6741c6ca824..cbc740666dd0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Automake.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Automake.md @@ -6,6 +6,10 @@ hide: Automake ======== + +Automake: GNU Standards-compliant Makefile generator + +https://www.gnu.org/software/automake/automake.html # Available modules @@ -14,21 +18,22 @@ The overview below shows which Automake installations are available per HPC-UGen To start using Automake, load one of these modules using a `module load` command like: ```shell -module load Automake/1.16.5-GCCcore-12.3.0 +module load Automake/1.16.5-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Automake/1.16.5-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Automake/1.16.5-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Automake/1.16.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Automake/1.16.5|x|x|x|x|x|x|x|x| -|Automake/1.16.4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Automake/1.16.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Automake/1.16.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Automake/1.16.1-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Automake/1.16.1-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|Automake/1.16.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|Automake/1.15.1-GCCcore-8.3.0|-|x|-|-|-|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Automake/1.16.5-GCCcore-13.2.0|x|x|x|x|x|x| +|Automake/1.16.5-GCCcore-12.3.0|x|x|x|x|x|x| +|Automake/1.16.5-GCCcore-12.2.0|x|x|x|x|x|x| +|Automake/1.16.5-GCCcore-11.3.0|x|x|x|x|x|x| +|Automake/1.16.5|x|x|x|x|x|x| +|Automake/1.16.4-GCCcore-11.2.0|x|x|x|x|x|x| +|Automake/1.16.3-GCCcore-10.3.0|x|x|x|x|x|x| +|Automake/1.16.2-GCCcore-10.2.0|x|x|x|x|x|x| +|Automake/1.16.1-GCCcore-9.3.0|x|x|x|x|x|x| +|Automake/1.16.1-GCCcore-8.3.0|x|x|x|x|x|x| +|Automake/1.16.1-GCCcore-8.2.0|-|x|-|-|-|-| +|Automake/1.15.1-GCCcore-8.3.0|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Autotools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Autotools.md index 90f8bab1be04..f1061b6027b3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Autotools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Autotools.md @@ -6,6 +6,10 @@ hide: Autotools ========= + +This bundle collect the standard GNU build tools: Autoconf, Automake and libtool + +http://autotools.io # Available modules @@ -14,20 +18,21 @@ The overview below shows which Autotools installations are available per HPC-UGe To start using Autotools, load one of these modules using a `module load` command like: ```shell -module load Autotools/20220317-GCCcore-12.3.0 +module load Autotools/20220317-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Autotools/20220317-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Autotools/20220317-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Autotools/20220317-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Autotools/20220317|x|x|x|x|x|x|x|x| -|Autotools/20210726-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Autotools/20210128-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Autotools/20200321-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Autotools/20180311-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Autotools/20180311-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|Autotools/20180311-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Autotools/20220317-GCCcore-13.2.0|x|x|x|x|x|x| +|Autotools/20220317-GCCcore-12.3.0|x|x|x|x|x|x| +|Autotools/20220317-GCCcore-12.2.0|x|x|x|x|x|x| +|Autotools/20220317-GCCcore-11.3.0|x|x|x|x|x|x| +|Autotools/20220317|x|x|x|x|x|x| +|Autotools/20210726-GCCcore-11.2.0|x|x|x|x|x|x| +|Autotools/20210128-GCCcore-10.3.0|x|x|x|x|x|x| +|Autotools/20200321-GCCcore-10.2.0|x|x|x|x|x|x| +|Autotools/20180311-GCCcore-9.3.0|x|x|x|x|x|x| +|Autotools/20180311-GCCcore-8.3.0|x|x|x|x|x|x| +|Autotools/20180311-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Avogadro2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Avogadro2.md index 89cb6a0641c0..8a799e9ab09b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Avogadro2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Avogadro2.md @@ -6,6 +6,10 @@ hide: Avogadro2 ========= + +Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. + +https://two.avogadro.cc/index.html # Available modules @@ -17,8 +21,8 @@ To start using Avogadro2, load one of these modules using a `module load` comman module load Avogadro2/1.97.0-linux-x86_64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Avogadro2/1.97.0-linux-x86_64|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Avogadro2/1.97.0-linux-x86_64|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BAMSurgeon.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BAMSurgeon.md index df2601e4cd8c..79098802be21 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BAMSurgeon.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BAMSurgeon.md @@ -6,6 +6,10 @@ hide: BAMSurgeon ========== + +Tools for adding mutations to existing .bam files, used for testing mutation callers + +https://github.com/adamewing/bamsurgeon # Available modules @@ -17,8 +21,8 @@ To start using BAMSurgeon, load one of these modules using a `module load` comma module load BAMSurgeon/1.2-GCC-8.3.0-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BAMSurgeon/1.2-GCC-8.3.0-Python-2.7.16|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BAMSurgeon/1.2-GCC-8.3.0-Python-2.7.16|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BBMap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BBMap.md index e77d916be9b8..45c0cc20c04f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BBMap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BBMap.md @@ -6,6 +6,10 @@ hide: BBMap ===== + +BBMap short read aligner, and other bioinformatic tools. + +https://sourceforge.net/projects/bbmap/ # Available modules @@ -17,10 +21,10 @@ To start using BBMap, load one of these modules using a `module load` command li module load BBMap/39.01-GCC-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BBMap/39.01-GCC-12.2.0|x|x|x|x|x|x|x|x| -|BBMap/38.98-GCC-11.2.0|x|x|x|-|x|x|x|x| -|BBMap/38.87-iccifort-2020.1.217|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BBMap/39.01-GCC-12.2.0|x|x|x|x|x|x| +|BBMap/38.98-GCC-11.2.0|x|x|x|-|x|x| +|BBMap/38.87-iccifort-2020.1.217|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md index 54fdbd0dcee4..02b5af72f772 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BCFtools.md @@ -6,6 +6,10 @@ hide: BCFtools ======== + +Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants + +https://www.htslib.org/ # Available modules @@ -14,17 +18,19 @@ The overview below shows which BCFtools installations are available per HPC-UGen To start using BCFtools, load one of these modules using a `module load` command like: ```shell -module load BCFtools/1.15.1-GCC-11.3.0 +module load BCFtools/1.18-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BCFtools/1.15.1-GCC-11.3.0|x|x|x|x|x|x|x|x| -|BCFtools/1.14-GCC-11.2.0|x|x|x|x|x|x|x|x| -|BCFtools/1.12-GCC-10.3.0|x|x|x|-|x|x|x|x| -|BCFtools/1.12-GCC-10.2.0|-|x|x|-|x|-|x|-| -|BCFtools/1.11-GCC-10.2.0|x|x|x|x|x|x|x|x| -|BCFtools/1.10.2-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|BCFtools/1.10.2-GCC-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BCFtools/1.18-GCC-12.3.0|x|x|x|x|x|x| +|BCFtools/1.17-GCC-12.2.0|x|x|x|x|x|x| +|BCFtools/1.15.1-GCC-11.3.0|x|x|x|x|x|x| +|BCFtools/1.14-GCC-11.2.0|x|x|x|x|x|x| +|BCFtools/1.12-GCC-10.3.0|x|x|x|-|x|x| +|BCFtools/1.12-GCC-10.2.0|-|x|x|-|x|-| +|BCFtools/1.11-GCC-10.2.0|x|x|x|x|x|x| +|BCFtools/1.10.2-iccifort-2019.5.281|-|x|x|-|x|x| +|BCFtools/1.10.2-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BDBag.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BDBag.md index 1eebe0b36546..6742034d3c7c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BDBag.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BDBag.md @@ -6,6 +6,10 @@ hide: BDBag ===== + +The bdbag utilities are a collection of software programs forworking with BagIt packages that conform to the Bagit and Bagit/RO profiles. + +https://github.com/fair-research/bdbag # Available modules @@ -17,8 +21,15 @@ To start using BDBag, load one of these modules using a `module load` command li module load BDBag/1.6.3-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BDBag/1.6.3-intel-2021b|x|x|x|-|x|x| + + +### BDBag/1.6.3-intel-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BDBag/1.6.3-intel-2021b|x|x|x|-|x|x|x|x| +bagit-1.8.1, bagit_profile-1.3.1, bdbag-1.6.3, setuptools_scm-5.0.2, tzlocal-2.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BEDOPS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BEDOPS.md index 6cc24428995a..f2761c2ca974 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BEDOPS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BEDOPS.md @@ -6,6 +6,10 @@ hide: BEDOPS ====== + +BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster. + +http://bedops.readthedocs.io/en/latest/index.html # Available modules @@ -17,8 +21,8 @@ To start using BEDOPS, load one of these modules using a `module load` command l module load BEDOPS/2.4.41-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BEDOPS/2.4.41-foss-2021b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BEDOPS/2.4.41-foss-2021b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BEDTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BEDTools.md index 05ec8e65c84d..50a30c48da86 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BEDTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BEDTools.md @@ -6,6 +6,10 @@ hide: BEDTools ======== + +BEDTools: a powerful toolset for genome arithmetic.The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps andcomputing coverage.The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. + +https://bedtools.readthedocs.io/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which BEDTools installations are available per HPC-UGen To start using BEDTools, load one of these modules using a `module load` command like: ```shell -module load BEDTools/2.30.0-GCC-12.2.0 +module load BEDTools/2.31.0-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BEDTools/2.30.0-GCC-12.2.0|x|x|x|x|x|x|x|x| -|BEDTools/2.30.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|BEDTools/2.30.0-GCC-11.2.0|x|x|x|x|x|x|x|x| -|BEDTools/2.30.0-GCC-10.2.0|-|x|x|x|x|x|x|x| -|BEDTools/2.29.2-GCC-9.3.0|-|x|x|-|x|x|x|x| -|BEDTools/2.29.2-GCC-8.3.0|-|x|x|-|x|x|x|x| -|BEDTools/2.19.1-GCC-8.3.0|-|-|-|-|-|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BEDTools/2.31.0-GCC-12.3.0|x|x|x|x|x|x| +|BEDTools/2.30.0-GCC-12.2.0|x|x|x|x|x|x| +|BEDTools/2.30.0-GCC-11.3.0|x|x|x|x|x|x| +|BEDTools/2.30.0-GCC-11.2.0|x|x|x|x|x|x| +|BEDTools/2.30.0-GCC-10.2.0|-|x|x|x|x|x| +|BEDTools/2.29.2-GCC-9.3.0|-|x|x|-|x|x| +|BEDTools/2.29.2-GCC-8.3.0|-|x|x|-|x|x| +|BEDTools/2.19.1-GCC-8.3.0|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BLAST+.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BLAST+.md index 9b5823824673..577619fb0efb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BLAST+.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BLAST+.md @@ -6,6 +6,10 @@ hide: BLAST+ ====== + +Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences. + +https://blast.ncbi.nlm.nih.gov/ # Available modules @@ -14,19 +18,20 @@ The overview below shows which BLAST+ installations are available per HPC-UGent To start using BLAST+, load one of these modules using a `module load` command like: ```shell -module load BLAST+/2.14.0-gompi-2022b +module load BLAST+/2.14.1-gompi-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BLAST+/2.14.0-gompi-2022b|x|x|x|x|x|x|x|x| -|BLAST+/2.13.0-gompi-2022a|x|x|x|x|x|x|x|x| -|BLAST+/2.12.0-gompi-2021b|x|x|x|x|x|x|x|x| -|BLAST+/2.11.0-gompi-2021a|-|x|x|-|x|x|x|x| -|BLAST+/2.11.0-gompi-2020b|x|x|x|x|x|x|x|x| -|BLAST+/2.10.1-iimpi-2020a|-|x|x|-|x|x|x|x| -|BLAST+/2.10.1-gompi-2020a|-|x|x|-|x|x|x|x| -|BLAST+/2.9.0-iimpi-2019b|-|x|x|-|x|x|-|x| -|BLAST+/2.9.0-gompi-2019b|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BLAST+/2.14.1-gompi-2023a|x|x|x|x|x|x| +|BLAST+/2.14.0-gompi-2022b|x|x|x|x|x|x| +|BLAST+/2.13.0-gompi-2022a|x|x|x|x|x|x| +|BLAST+/2.12.0-gompi-2021b|x|x|x|x|x|x| +|BLAST+/2.11.0-gompi-2021a|-|x|x|x|x|x| +|BLAST+/2.11.0-gompi-2020b|x|x|x|x|x|x| +|BLAST+/2.10.1-iimpi-2020a|-|x|x|-|x|x| +|BLAST+/2.10.1-gompi-2020a|-|x|x|-|x|x| +|BLAST+/2.9.0-iimpi-2019b|-|x|x|-|x|x| +|BLAST+/2.9.0-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BLAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BLAT.md index 852c264f1535..e7e41b0a84f8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BLAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BLAT.md @@ -6,6 +6,10 @@ hide: BLAT ==== + +BLAT on DNA is designed to quickly find sequences of 95% andgreater similarity of length 25 bases or more. + +https://genome.ucsc.edu/FAQ/FAQblat.html # Available modules @@ -17,10 +21,10 @@ To start using BLAT, load one of these modules using a `module load` command lik module load BLAT/3.7-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BLAT/3.7-GCC-11.3.0|x|x|x|x|x|x|x|x| -|BLAT/3.5-GCC-9.3.0|-|x|x|-|x|-|x|-| -|BLAT/3.5-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BLAT/3.7-GCC-11.3.0|x|x|x|x|x|x| +|BLAT/3.5-GCC-9.3.0|-|x|x|-|x|-| +|BLAT/3.5-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BLIS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BLIS.md index 5558020649c9..b01592861745 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BLIS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BLIS.md @@ -6,6 +6,10 @@ hide: BLIS ==== + +BLIS is a portable software framework for instantiating high-performanceBLAS-like dense linear algebra libraries. + +https://github.com/flame/blis/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which BLIS installations are available per HPC-UGent Ti To start using BLIS, load one of these modules using a `module load` command like: ```shell -module load BLIS/0.9.0-GCC-12.3.0 +module load BLIS/0.9.0-GCC-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BLIS/0.9.0-GCC-12.3.0|x|x|x|x|x|x|x|x| -|BLIS/0.9.0-GCC-12.2.0|x|x|x|x|x|x|x|x| -|BLIS/0.9.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|BLIS/0.8.1-GCC-11.2.0|x|x|x|x|x|x|x|x| -|BLIS/0.8.1-GCC-10.3.0|x|x|x|x|x|x|x|x| -|BLIS/0.8.0-GCCcore-10.2.0|-|x|-|-|-|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BLIS/0.9.0-GCC-13.2.0|x|x|x|x|x|x| +|BLIS/0.9.0-GCC-12.3.0|x|x|x|x|x|x| +|BLIS/0.9.0-GCC-12.2.0|x|x|x|x|x|x| +|BLIS/0.9.0-GCC-11.3.0|x|x|x|x|x|x| +|BLIS/0.8.1-GCC-11.2.0|x|x|x|x|x|x| +|BLIS/0.8.1-GCC-10.3.0|x|x|x|x|x|x| +|BLIS/0.8.0-GCCcore-10.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BRAKER.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BRAKER.md index 2410010fa297..46fce97216f3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BRAKER.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BRAKER.md @@ -6,6 +6,10 @@ hide: BRAKER ====== + +BRAKER is a pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes. + +https://github.com/Gaius-Augustus/BRAKER # Available modules @@ -17,10 +21,10 @@ To start using BRAKER, load one of these modules using a `module load` command l module load BRAKER/2.1.6-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BRAKER/2.1.6-foss-2021b|x|x|x|x|x|x|x|x| -|BRAKER/2.1.6-foss-2020b|x|x|x|-|x|x|x|x| -|BRAKER/2.1.5-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BRAKER/2.1.6-foss-2021b|x|x|x|x|x|x| +|BRAKER/2.1.6-foss-2020b|x|x|x|-|x|x| +|BRAKER/2.1.5-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BSMAPz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BSMAPz.md index a16106c656e4..ed131685827f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BSMAPz.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BSMAPz.md @@ -6,6 +6,10 @@ hide: BSMAPz ====== + +Updated and optimized fork of BSMAP.BSMAPz is a short reads mapping program for bisulfite sequencing in DNA methylation study. + +https://github.com/zyndagj/BSMAPz # Available modules @@ -17,8 +21,8 @@ To start using BSMAPz, load one of these modules using a `module load` command l module load BSMAPz/1.1.1-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BSMAPz/1.1.1-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BSMAPz/1.1.1-intel-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BSseeker2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BSseeker2.md index 7b01e64130b7..f852c71426cb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BSseeker2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BSseeker2.md @@ -6,6 +6,10 @@ hide: BSseeker2 ========= + +BS-Seeker2 is a seamless and versatile pipeline for accurately and fast mapping the bisulfite-treatedreads. + +http://pellegrini-legacy.mcdb.ucla.edu/bs_seeker2 # Available modules @@ -17,9 +21,9 @@ To start using BSseeker2, load one of these modules using a `module load` comman module load BSseeker2/2.1.8-iccifort-2019.5.281-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BSseeker2/2.1.8-iccifort-2019.5.281-Python-2.7.16|-|x|-|-|-|-|-|-| -|BSseeker2/2.1.8-GCC-8.3.0-Python-2.7.16|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BSseeker2/2.1.8-iccifort-2019.5.281-Python-2.7.16|-|x|-|-|-|-| +|BSseeker2/2.1.8-GCC-8.3.0-Python-2.7.16|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BUSCO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BUSCO.md index 947f301d1b34..422ed6739add 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BUSCO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BUSCO.md @@ -6,6 +6,10 @@ hide: BUSCO ===== + +BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs + +https://busco.ezlab.org/ # Available modules @@ -17,12 +21,12 @@ To start using BUSCO, load one of these modules using a `module load` command li module load BUSCO/5.4.3-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BUSCO/5.4.3-foss-2021b|x|x|x|-|x|x|x|x| -|BUSCO/5.1.2-foss-2020b|-|x|x|x|x|-|x|-| -|BUSCO/4.1.2-foss-2020b|-|x|x|-|x|x|-|x| -|BUSCO/4.0.6-foss-2020b|-|x|x|x|x|x|-|x| -|BUSCO/4.0.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BUSCO/5.4.3-foss-2021b|x|x|x|-|x|x| +|BUSCO/5.1.2-foss-2020b|-|x|x|x|x|-| +|BUSCO/4.1.2-foss-2020b|-|x|x|-|x|x| +|BUSCO/4.0.6-foss-2020b|-|x|x|x|x|x| +|BUSCO/4.0.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BUStools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BUStools.md new file mode 100644 index 000000000000..1dfeefb6d92e --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BUStools.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +BUStools +======== + + +bustools is a program for manipulating BUS files for single cell RNA-Seq datasets. It can be used to error correct barcodes, collapse UMIs, produce gene count or transcript compatibility count matrices, and is useful for many other tasks. See the kallisto | bustools website for examples and instructions on how to use bustools as part of a single-cell RNA-seq workflow. + +https://github.com/BUStools/bustools +# Available modules + + +The overview below shows which BUStools installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using BUStools, load one of these modules using a `module load` command like: + +```shell +module load BUStools/0.43.1-GCCcore-11.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BUStools/0.43.1-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md index 500af2ea114d..802c9b6e1b23 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BWA.md @@ -6,6 +6,10 @@ hide: BWA === + +Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. + +http://bio-bwa.sourceforge.net/ # Available modules @@ -17,14 +21,15 @@ To start using BWA, load one of these modules using a `module load` command like module load BWA/0.7.17-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BWA/0.7.17-iccifort-2019.5.281|-|x|-|-|-|-|-|-| -|BWA/0.7.17-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|BWA/0.7.17-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|BWA/0.7.17-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|BWA/0.7.17-GCC-10.2.0|-|x|x|x|x|x|x|x| -|BWA/0.7.17-GCC-9.3.0|-|x|x|-|x|x|x|x| -|BWA/0.7.17-GCC-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BWA/0.7.17-iccifort-2019.5.281|-|x|-|-|-|-| +|BWA/0.7.17-GCCcore-12.3.0|x|x|x|x|x|x| +|BWA/0.7.17-GCCcore-12.2.0|x|x|x|x|x|x| +|BWA/0.7.17-GCCcore-11.3.0|x|x|x|x|x|x| +|BWA/0.7.17-GCCcore-11.2.0|x|x|x|x|x|x| +|BWA/0.7.17-GCC-10.2.0|-|x|x|x|x|x| +|BWA/0.7.17-GCC-9.3.0|-|x|x|-|x|x| +|BWA/0.7.17-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BamTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BamTools.md index 23027887dfa2..dd577f975424 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BamTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BamTools.md @@ -6,6 +6,10 @@ hide: BamTools ======== + +BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files. + +https://github.com/pezmaster31/bamtools # Available modules @@ -14,17 +18,18 @@ The overview below shows which BamTools installations are available per HPC-UGen To start using BamTools, load one of these modules using a `module load` command like: ```shell -module load BamTools/2.5.2-GCC-12.2.0 +module load BamTools/2.5.2-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BamTools/2.5.2-GCC-12.2.0|x|x|x|x|x|x|x|x| -|BamTools/2.5.2-GCC-11.3.0|x|x|x|x|x|x|x|x| -|BamTools/2.5.2-GCC-11.2.0|x|x|x|x|x|x|x|x| -|BamTools/2.5.1-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|BamTools/2.5.1-GCC-10.2.0|x|x|x|x|x|x|x|x| -|BamTools/2.5.1-GCC-9.3.0|-|x|x|-|x|x|x|x| -|BamTools/2.5.1-GCC-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BamTools/2.5.2-GCC-12.3.0|x|x|x|x|x|x| +|BamTools/2.5.2-GCC-12.2.0|x|x|x|x|x|x| +|BamTools/2.5.2-GCC-11.3.0|x|x|x|x|x|x| +|BamTools/2.5.2-GCC-11.2.0|x|x|x|x|x|x| +|BamTools/2.5.1-iccifort-2019.5.281|-|x|x|-|x|x| +|BamTools/2.5.1-GCC-10.2.0|x|x|x|x|x|x| +|BamTools/2.5.1-GCC-9.3.0|-|x|x|-|x|x| +|BamTools/2.5.1-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bambi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bambi.md index ee0b1e3a22ef..587f7b802818 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bambi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bambi.md @@ -6,6 +6,10 @@ hide: Bambi ===== + +Bambi is a high-level Bayesian model-building interface written in Python.It works with the probabilistic programming frameworks PyMC3 and is designedto make it extremely easy to fit Bayesian mixed-effects models common in biology,social sciences and other disciplines. + +https://bambinos.github.io/bambi # Available modules @@ -17,8 +21,15 @@ To start using Bambi, load one of these modules using a `module load` command li module load Bambi/0.7.1-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bambi/0.7.1-intel-2021b|x|x|x|-|x|x| + + +### Bambi/0.7.1-intel-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bambi/0.7.1-intel-2021b|x|x|x|-|x|x|x|x| +bambi-0.7.1, formulae-0.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bandage.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bandage.md index 43dd43a63edc..d64bf10db6a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bandage.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bandage.md @@ -6,6 +6,10 @@ hide: Bandage ======= + +Bandage is a program for visualising de novo assembly graphs + +http://rrwick.github.io/Bandage/ # Available modules @@ -17,9 +21,9 @@ To start using Bandage, load one of these modules using a `module load` command module load Bandage/0.9.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bandage/0.9.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Bandage/0.8.1_Centos|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bandage/0.9.0-GCCcore-11.2.0|x|x|x|-|x|x| +|Bandage/0.8.1_Centos|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BatMeth2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BatMeth2.md index dc3cfb2636c5..658c191e4759 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BatMeth2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BatMeth2.md @@ -6,6 +6,10 @@ hide: BatMeth2 ======== + +An Integrated Package for Bisulfite DNA Methylation Data Analysis with Indel-sensitive Mapping. + +https://github.com/GuoliangLi-HZAU/BatMeth2 # Available modules @@ -17,8 +21,8 @@ To start using BatMeth2, load one of these modules using a `module load` command module load BatMeth2/2.1-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BatMeth2/2.1-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BatMeth2/2.1-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScEnv.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScEnv.md index 22b94ad3a2d6..406673275724 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScEnv.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScEnv.md @@ -6,6 +6,10 @@ hide: BayeScEnv ========= + +BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detectlocal adaptation. + +https://github.com/devillemereuil/bayescenv # Available modules @@ -17,9 +21,9 @@ To start using BayeScEnv, load one of these modules using a `module load` comman module load BayeScEnv/1.1-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BayeScEnv/1.1-iccifort-2019.5.281|-|x|-|-|-|-|-|-| -|BayeScEnv/1.1-GCC-8.3.0|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BayeScEnv/1.1-iccifort-2019.5.281|-|x|-|-|-|-| +|BayeScEnv/1.1-GCC-8.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScan.md index 207b110237df..ef8e0be2649c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BayeScan.md @@ -6,6 +6,10 @@ hide: BayeScan ======== + +BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. + +http://cmpg.unibe.ch/software/BayeScan # Available modules @@ -17,8 +21,8 @@ To start using BayeScan, load one of these modules using a `module load` command module load BayeScan/2.1-intel-compilers-2021.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BayeScan/2.1-intel-compilers-2021.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BayeScan/2.1-intel-compilers-2021.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BayesAss3-SNPs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BayesAss3-SNPs.md index 954b04c8ff5f..10736f654ea1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BayesAss3-SNPs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BayesAss3-SNPs.md @@ -6,6 +6,10 @@ hide: BayesAss3-SNPs ============== + +Modification of BayesAss 3.0.4 to allow handling of large SNP datasets generated via methods such asRADseq protocols. + +https://github.com/stevemussmann/BayesAss3-SNPs # Available modules @@ -17,8 +21,8 @@ To start using BayesAss3-SNPs, load one of these modules using a `module load` c module load BayesAss3-SNPs/1.1-2022.02.19-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BayesAss3-SNPs/1.1-2022.02.19-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BayesAss3-SNPs/1.1-2022.02.19-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BayesPrism.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BayesPrism.md index 3bc2f464bd85..a3feede44038 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BayesPrism.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BayesPrism.md @@ -6,6 +6,10 @@ hide: BayesPrism ========== + +Bayesian cell Proportion Reconstruction Inferred using Statistical Marginalization (BayesPrism): A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression + +https://github.com/Danko-Lab/BayesPrism # Available modules @@ -17,8 +21,8 @@ To start using BayesPrism, load one of these modules using a `module load` comma module load BayesPrism/2.0-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BayesPrism/2.0-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BayesPrism/2.0-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bazel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bazel.md index f6a102283184..1b7ecd792e5c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bazel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bazel.md @@ -6,6 +6,10 @@ hide: Bazel ===== + +Bazel is a build tool that builds code quickly and reliably.It is used to build the majority of Google's software. + +https://bazel.io/ # Available modules @@ -14,21 +18,23 @@ The overview below shows which Bazel installations are available per HPC-UGent T To start using Bazel, load one of these modules using a `module load` command like: ```shell -module load Bazel/5.1.1-GCCcore-11.3.0 +module load Bazel/6.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bazel/5.1.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Bazel/4.2.2-GCCcore-11.2.0|-|-|-|x|-|-|-|-| -|Bazel/3.7.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Bazel/3.7.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Bazel/3.7.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Bazel/3.6.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Bazel/3.4.1-GCCcore-8.3.0|-|-|x|-|x|x|-|x| -|Bazel/2.0.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|Bazel/2.0.0-GCCcore-8.3.0|-|x|x|-|x|x|x|x| -|Bazel/0.29.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| -|Bazel/0.26.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bazel/6.3.1-GCCcore-12.3.0|x|x|x|x|x|x| +|Bazel/6.3.1-GCCcore-12.2.0|x|x|x|x|x|x| +|Bazel/5.1.1-GCCcore-11.3.0|x|x|x|x|x|x| +|Bazel/4.2.2-GCCcore-11.2.0|-|-|-|x|-|-| +|Bazel/3.7.2-GCCcore-11.2.0|x|x|x|x|x|x| +|Bazel/3.7.2-GCCcore-10.3.0|x|x|x|x|x|x| +|Bazel/3.7.2-GCCcore-10.2.0|x|x|x|x|x|x| +|Bazel/3.6.0-GCCcore-9.3.0|-|x|x|-|x|x| +|Bazel/3.4.1-GCCcore-8.3.0|-|-|x|-|x|x| +|Bazel/2.0.0-GCCcore-10.2.0|-|x|x|x|x|x| +|Bazel/2.0.0-GCCcore-8.3.0|-|x|x|-|x|x| +|Bazel/0.29.1-GCCcore-8.3.0|-|x|x|-|x|x| +|Bazel/0.26.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Beast.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Beast.md index 283deb1bffda..2d4c38a40415 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Beast.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Beast.md @@ -6,6 +6,10 @@ hide: Beast ===== + +BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. + +http://beast2.org # Available modules @@ -17,11 +21,11 @@ To start using Beast, load one of these modules using a `module load` command li module load Beast/2.7.3-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Beast/2.7.3-GCC-11.3.0|x|x|x|x|x|x|x|x| -|Beast/2.6.4-GCC-10.2.0|-|x|x|-|x|-|x|-| -|Beast/1.10.5pre1-GCC-11.3.0|x|x|x|-|x|x|x|x| -|Beast/1.10.4-gcccuda-2019b|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Beast/2.7.3-GCC-11.3.0|x|x|x|x|x|x| +|Beast/2.6.4-GCC-10.2.0|-|x|x|-|x|-| +|Beast/1.10.5pre1-GCC-11.3.0|x|x|x|-|x|x| +|Beast/1.10.4-gcccuda-2019b|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BeautifulSoup.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BeautifulSoup.md index 10dc9819b1ec..4691a8e082e9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BeautifulSoup.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BeautifulSoup.md @@ -6,6 +6,10 @@ hide: BeautifulSoup ============= + +Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping. + +https://www.crummy.com/software/BeautifulSoup # Available modules @@ -14,13 +18,46 @@ The overview below shows which BeautifulSoup installations are available per HPC To start using BeautifulSoup, load one of these modules using a `module load` command like: ```shell -module load BeautifulSoup/4.10.0-GCCcore-11.3.0 +module load BeautifulSoup/4.12.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BeautifulSoup/4.12.2-GCCcore-12.3.0|x|x|x|x|x|x| +|BeautifulSoup/4.11.1-GCCcore-12.2.0|x|x|x|x|x|x| +|BeautifulSoup/4.10.0-GCCcore-11.3.0|x|x|x|x|x|x| +|BeautifulSoup/4.10.0-GCCcore-11.2.0|x|x|x|-|x|x| +|BeautifulSoup/4.10.0-GCCcore-10.3.0|x|x|x|x|x|x| + + +### BeautifulSoup/4.12.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +BeautifulSoup-4.12.2, soupsieve-2.4.1 + +### BeautifulSoup/4.11.1-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +BeautifulSoup-4.11.1, hatchling-1.12.2, soupsieve-2.3.2.post1 + +### BeautifulSoup/4.10.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +BeautifulSoup-4.10.0, soupsieve-2.3.1 + +### BeautifulSoup/4.10.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +BeautifulSoup-4.10.0, soupsieve-2.3.1 + +### BeautifulSoup/4.10.0-GCCcore-10.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BeautifulSoup/4.10.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|BeautifulSoup/4.10.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|BeautifulSoup/4.10.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| +BeautifulSoup-4.10.0, soupsieve-2.3.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BerkeleyGW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BerkeleyGW.md index eb1ed1a4eddc..143bb3a09ba5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BerkeleyGW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BerkeleyGW.md @@ -6,6 +6,10 @@ hide: BerkeleyGW ========== + +The BerkeleyGW Package is a set of computer codes that calculates the quasiparticle properties and the optical responses of a large variety of materials from bulk periodic crystals to nanostructures such as slabs, wires and molecules. + +https://www.berkeleygw.org # Available modules @@ -17,9 +21,9 @@ To start using BerkeleyGW, load one of these modules using a `module load` comma module load BerkeleyGW/2.1.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BerkeleyGW/2.1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|BerkeleyGW/2.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BerkeleyGW/2.1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|BerkeleyGW/2.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BiG-SCAPE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BiG-SCAPE.md index 0ebe64907059..538ff4455183 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BiG-SCAPE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BiG-SCAPE.md @@ -6,6 +6,10 @@ hide: BiG-SCAPE ========= + +BiG-SCAPE and CORASON provide a set of tools to explore the diversity of biosynthetic gene clusters (BGCs) across large numbers of genomes, by constructing BGC sequence similarity networks, grouping BGCs into gene cluster families, and exploring gene cluster diversity linked to enzyme phylogenies. + +https://bigscape-corason.secondarymetabolites.org/index.html # Available modules @@ -17,8 +21,8 @@ To start using BiG-SCAPE, load one of these modules using a `module load` comman module load BiG-SCAPE/1.0.1-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BiG-SCAPE/1.0.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BiG-SCAPE/1.0.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BigDFT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BigDFT.md index 7e93e1d8adc8..03243d2133db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BigDFT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BigDFT.md @@ -6,6 +6,10 @@ hide: BigDFT ====== + +BigDFT: electronic structure calculation based on Daubechies wavelets.bigdft-suite is a set of different packages to run bigdft. + +https://gitlab.com/l_sim/bigdft-suite # Available modules @@ -17,8 +21,8 @@ To start using BigDFT, load one of these modules using a `module load` command l module load BigDFT/1.9.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BigDFT/1.9.1-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BigDFT/1.9.1-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BinSanity.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BinSanity.md index ba2988f0e53c..a2638f3e9fd6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BinSanity.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BinSanity.md @@ -6,6 +6,10 @@ hide: BinSanity ========= + +BinSanity contains a suite a scripts designed to cluster contigs generated frommetagenomic assembly into putative genomes. + +https://github.com/edgraham/BinSanity/wiki # Available modules @@ -17,8 +21,8 @@ To start using BinSanity, load one of these modules using a `module load` comman module load BinSanity/0.3.5-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BinSanity/0.3.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BinSanity/0.3.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-DB-HTS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-DB-HTS.md index f642c2a2e0ac..87404726450f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-DB-HTS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-DB-HTS.md @@ -6,6 +6,10 @@ hide: Bio-DB-HTS ========== + +Read files using HTSlib including BAM/CRAM, Tabix and BCF database files + +https://metacpan.org/release/Bio-DB-HTS # Available modules @@ -17,9 +21,9 @@ To start using Bio-DB-HTS, load one of these modules using a `module load` comma module load Bio-DB-HTS/3.01-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bio-DB-HTS/3.01-GCC-11.3.0|x|x|x|-|x|x|x|x| -|Bio-DB-HTS/3.01-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bio-DB-HTS/3.01-GCC-11.3.0|x|x|x|-|x|x| +|Bio-DB-HTS/3.01-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-EUtilities.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-EUtilities.md index 8e387d5cade1..fac7be2e7532 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-EUtilities.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-EUtilities.md @@ -6,6 +6,10 @@ hide: Bio-EUtilities ============== + +BioPerl low-level API for retrieving and storing data from NCBI eUtils + +https://github.com/bioperl/bio-eutilities # Available modules @@ -17,8 +21,15 @@ To start using Bio-EUtilities, load one of these modules using a `module load` c module load Bio-EUtilities/1.76-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bio-EUtilities/1.76-GCCcore-8.3.0|-|x|x|-|x|x| + + +### Bio-EUtilities/1.76-GCCcore-8.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bio-EUtilities/1.76-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +base-2.23, Bio::ASN1::EntrezGene-1.73, Bio::DB::EUtilities-1.76, Text::Wrap-2013.0523 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-SearchIO-hmmer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-SearchIO-hmmer.md index f3d1d03135a1..682588752c32 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-SearchIO-hmmer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bio-SearchIO-hmmer.md @@ -6,6 +6,10 @@ hide: Bio-SearchIO-hmmer ================== + +Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatiblewith both version 2 and version 3 of the HMMER package from http://hmmer.org. + +https://metacpan.org/pod/Bio::SearchIO::hmmer3 # Available modules @@ -17,8 +21,8 @@ To start using Bio-SearchIO-hmmer, load one of these modules using a `module loa module load Bio-SearchIO-hmmer/1.7.3-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bio-SearchIO-hmmer/1.7.3-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bio-SearchIO-hmmer/1.7.3-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/BioPerl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/BioPerl.md index 01b8b2a52423..957b02ad7bb5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/BioPerl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/BioPerl.md @@ -6,6 +6,10 @@ hide: BioPerl ======= + +Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. + +https://bioperl.org/ # Available modules @@ -17,12 +21,37 @@ To start using BioPerl, load one of these modules using a `module load` command module load BioPerl/1.7.8-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|BioPerl/1.7.8-GCCcore-11.3.0|x|x|x|x|x|x| +|BioPerl/1.7.8-GCCcore-11.2.0|x|x|x|x|x|x| +|BioPerl/1.7.8-GCCcore-10.2.0|-|x|x|x|x|x| +|BioPerl/1.7.7-GCCcore-9.3.0|-|x|x|-|x|x| +|BioPerl/1.7.2-GCCcore-8.3.0|-|x|x|-|x|x| + + +### BioPerl/1.7.8-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +Bio::DB::SeqFeature-1.7.4, Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::DOM::XPath-0.14, XML::Writer-0.900 + +### BioPerl/1.7.8-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::DOM::XPath-0.14, XML::Writer-0.900 + +### BioPerl/1.7.8-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::DOM::XPath-0.14, XML::Writer-0.900 + +### BioPerl/1.7.7-GCCcore-9.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|BioPerl/1.7.8-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|BioPerl/1.7.8-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|BioPerl/1.7.8-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|BioPerl/1.7.7-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|BioPerl/1.7.2-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +Bio::Procedural-1.7.4, BioPerl-1.7.7, XML::DOM::XPath-0.14, XML::Writer-0.625 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md index 30556f6612db..6678f4e2dfd8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Biopython.md @@ -6,6 +6,10 @@ hide: Biopython ========= + +Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. + +https://www.biopython.org # Available modules @@ -14,24 +18,25 @@ The overview below shows which Biopython installations are available per HPC-UGe To start using Biopython, load one of these modules using a `module load` command like: ```shell -module load Biopython/1.81-foss-2022b +module load Biopython/1.83-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Biopython/1.81-foss-2022b|x|x|x|x|x|x|x|x| -|Biopython/1.79-foss-2022a|x|x|x|x|x|x|x|x| -|Biopython/1.79-foss-2021b|x|x|x|x|x|x|x|x| -|Biopython/1.79-foss-2021a|x|x|x|x|x|x|x|x| -|Biopython/1.78-intel-2020b|-|x|x|-|x|x|x|x| -|Biopython/1.78-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|Biopython/1.78-fosscuda-2020b|x|-|-|-|x|-|-|-| -|Biopython/1.78-foss-2020b|x|x|x|x|x|x|x|x| -|Biopython/1.78-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|Biopython/1.76-foss-2021b-Python-2.7.18|x|x|x|x|x|x|x|x| -|Biopython/1.76-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| -|Biopython/1.75-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|Biopython/1.75-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|Biopython/1.75-foss-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Biopython/1.83-foss-2023a|x|x|x|x|x|x| +|Biopython/1.81-foss-2022b|x|x|x|x|x|x| +|Biopython/1.79-foss-2022a|x|x|x|x|x|x| +|Biopython/1.79-foss-2021b|x|x|x|x|x|x| +|Biopython/1.79-foss-2021a|x|x|x|x|x|x| +|Biopython/1.78-intel-2020b|-|x|x|-|x|x| +|Biopython/1.78-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|Biopython/1.78-fosscuda-2020b|x|-|-|-|x|-| +|Biopython/1.78-foss-2020b|x|x|x|x|x|x| +|Biopython/1.78-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|Biopython/1.76-foss-2021b-Python-2.7.18|x|x|x|x|x|x| +|Biopython/1.76-foss-2020b-Python-2.7.18|-|x|x|x|x|x| +|Biopython/1.75-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|Biopython/1.75-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|Biopython/1.75-foss-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bismark.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bismark.md index efdf74112518..029fec0af9e5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bismark.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bismark.md @@ -6,6 +6,10 @@ hide: Bismark ======= + +A tool to map bisulfite converted sequence reads and determine cytosine methylation states + +https://www.bioinformatics.babraham.ac.uk/projects/bismark/ # Available modules @@ -17,8 +21,8 @@ To start using Bismark, load one of these modules using a `module load` command module load Bismark/0.23.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bismark/0.23.1-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bismark/0.23.1-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bison.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bison.md index 1e70ecd100ea..eb715f509314 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bison.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bison.md @@ -6,6 +6,10 @@ hide: Bison ===== + +Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. + +http://www.gnu.org/software/bison # Available modules @@ -14,26 +18,27 @@ The overview below shows which Bison installations are available per HPC-UGent T To start using Bison, load one of these modules using a `module load` command like: ```shell -module load Bison/3.8.2-GCCcore-12.3.0 +module load Bison/3.8.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bison/3.8.2-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Bison/3.8.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Bison/3.8.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Bison/3.8.2|x|x|x|x|x|x|x|x| -|Bison/3.7.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Bison/3.7.6-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Bison/3.7.6|x|x|x|-|x|-|x|-| -|Bison/3.7.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Bison/3.7.1|x|x|x|-|x|-|x|-| -|Bison/3.5.3-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Bison/3.5.3|x|x|x|-|x|-|x|-| -|Bison/3.3.2-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|Bison/3.3.2|x|x|x|x|x|x|x|x| -|Bison/3.0.5-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|Bison/3.0.5|-|x|-|-|-|x|x|x| -|Bison/3.0.4|-|-|-|-|-|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bison/3.8.2-GCCcore-13.2.0|x|x|x|x|x|x| +|Bison/3.8.2-GCCcore-12.3.0|x|x|x|x|x|x| +|Bison/3.8.2-GCCcore-12.2.0|x|x|x|x|x|x| +|Bison/3.8.2-GCCcore-11.3.0|x|x|x|x|x|x| +|Bison/3.8.2|x|x|x|x|x|x| +|Bison/3.7.6-GCCcore-11.2.0|x|x|x|x|x|x| +|Bison/3.7.6-GCCcore-10.3.0|x|x|x|x|x|x| +|Bison/3.7.6|x|x|x|-|x|-| +|Bison/3.7.1-GCCcore-10.2.0|x|x|x|x|x|x| +|Bison/3.7.1|x|x|x|-|x|-| +|Bison/3.5.3-GCCcore-9.3.0|x|x|x|x|x|x| +|Bison/3.5.3|x|x|x|-|x|-| +|Bison/3.3.2-GCCcore-8.3.0|x|x|x|x|x|x| +|Bison/3.3.2|x|x|x|x|x|x| +|Bison/3.0.5-GCCcore-8.2.0|-|x|-|-|-|-| +|Bison/3.0.5|-|x|-|-|-|x| +|Bison/3.0.4|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Blender.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Blender.md index 1ae5df783d90..0430b7db6dfa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Blender.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Blender.md @@ -6,6 +6,10 @@ hide: Blender ======= + +Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. + +https://www.blender.org/ # Available modules @@ -17,12 +21,12 @@ To start using Blender, load one of these modules using a `module load` command module load Blender/3.5.0-linux-x86_64-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Blender/3.5.0-linux-x86_64-CUDA-11.7.0|x|x|x|x|x|x|x|x| -|Blender/3.3.1-linux-x86_64-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|Blender/3.3.1-linux-x86_64|x|x|x|-|x|x|x|x| -|Blender/2.81-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|Blender/2.81-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Blender/3.5.0-linux-x86_64-CUDA-11.7.0|x|x|x|x|x|x| +|Blender/3.3.1-linux-x86_64-CUDA-11.7.0|x|-|-|-|x|-| +|Blender/3.3.1-linux-x86_64|x|x|x|-|x|x| +|Blender/2.81-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|Blender/2.81-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Block.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Block.md index bb7dbed4eb48..7727c2e7a50e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Block.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Block.md @@ -6,6 +6,10 @@ hide: Block ===== + +Block implements the density matrix renormalization group (DMRG) algorithm forquantum chemistry. + +https://sanshar.github.io/Block/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which Block installations are available per HPC-UGent T To start using Block, load one of these modules using a `module load` command like: ```shell -module load Block/1.5.3-20200525-foss-2022a +module load Block/1.5.3-20200525-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Block/1.5.3-20200525-foss-2022a|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Block/1.5.3-20200525-foss-2022b|x|x|x|x|x|x| +|Block/1.5.3-20200525-foss-2022a|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc.md index 235bc1e72f5b..36f1b4e8c536 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc.md @@ -6,6 +6,10 @@ hide: Blosc ===== + +Blosc, an extremely fast, multi-threaded, meta-compressor library + +https://www.blosc.org/ # Available modules @@ -17,13 +21,13 @@ To start using Blosc, load one of these modules using a `module load` command li module load Blosc/1.21.3-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Blosc/1.21.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Blosc/1.21.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Blosc/1.21.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Blosc/1.21.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|Blosc/1.17.1-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Blosc/1.17.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Blosc/1.21.3-GCCcore-11.3.0|x|x|x|x|x|x| +|Blosc/1.21.1-GCCcore-11.2.0|x|x|x|x|x|x| +|Blosc/1.21.0-GCCcore-10.3.0|x|x|x|x|x|x| +|Blosc/1.21.0-GCCcore-10.2.0|-|x|x|x|x|x| +|Blosc/1.17.1-GCCcore-9.3.0|x|x|x|x|x|x| +|Blosc/1.17.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc2.md index f2686c1463de..77bd2128dd19 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Blosc2.md @@ -6,6 +6,10 @@ hide: Blosc2 ====== + +Blosc, an extremely fast, multi-threaded, meta-compressor library + +https://www.blosc.org/ # Available modules @@ -17,8 +21,8 @@ To start using Blosc2, load one of these modules using a `module load` command l module load Blosc2/2.6.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Blosc2/2.6.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Blosc2/2.6.1-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bonito.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bonito.md index 18165bf4d77d..d182ba431d18 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bonito.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bonito.md @@ -6,6 +6,10 @@ hide: Bonito ====== + +Convolution Basecaller for Oxford Nanopore Reads + +https://github.com/nanoporetech/bonito # Available modules @@ -17,10 +21,29 @@ To start using Bonito, load one of these modules using a `module load` command l module load Bonito/0.4.0-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bonito/0.4.0-fosscuda-2020b|-|-|-|-|x|-| +|Bonito/0.3.8-fosscuda-2020b|-|-|-|-|x|-| +|Bonito/0.1.0-foss-2019b-Python-3.7.4|-|x|-|-|-|x| + + +### Bonito/0.4.0-fosscuda-2020b + +This is a list of extensions included in the module: + +alembic-1.6.4, cliff-3.7.0, cmaes-0.8.2, cmd2-1.5.0, colorama-0.4.4, colorlog-5.0.1, crf-beam-0.0.1a0, fast-ctc-decode-0.3.0, greenlet-1.1.0, importlib_metadata-4.0.1, mappy-2.18, networkx-2.5.1, ont-bonito-0.4.0, optuna-2.7.0, prettytable-2.1.0, pyperclip-1.8.2, python-editor-1.0.4, seqdist-0.0.3, SQLAlchemy-1.4.15, stevedore-3.3.0 + +### Bonito/0.3.8-fosscuda-2020b + +This is a list of extensions included in the module: + +alembic-1.5.8, cliff-3.7.0, cmaes-0.8.2, cmd2-1.5.0, colorama-0.4.4, colorlog-5.0.1, crf-beam-0.0.1a0, fast-ctc-decode-0.3.0, greenlet-1.0.0, importlib_metadata-4.0.1, mappy-2.18, ont-bonito-0.3.8, ont-fast5-api-3.3.0, optuna-2.7.0, prettytable-2.1.0, progressbar33-2.4, pyperclip-1.8.2, python-editor-1.0.4, seqdist-0.0.3, SQLAlchemy-1.4.11, stevedore-3.3.0 + +### Bonito/0.1.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bonito/0.4.0-fosscuda-2020b|-|-|-|-|x|-|-|-| -|Bonito/0.3.8-fosscuda-2020b|-|-|-|-|x|-|-|-| -|Bonito/0.1.0-foss-2019b-Python-3.7.4|-|x|-|-|-|x|-|x| +alembic-1.4.2, cliff-3.1.0, cmd2-1.0.1, colorama-0.4.3, colorlog-4.1.0, fast-ctc-decode-0.2.3, ont-bonito-0.1.0, ont-fast5-api-3.0.1, optuna-1.1.0, parasail-1.2, prettytable-0.7.2, progressbar33-2.4, pyperclip-1.7.0, python-editor-1.0.4, SQLAlchemy-1.3.15, stevedore-1.32.0, toml-0.10.0, tqdm-4.31.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bonnie++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bonnie++.md index 2f3444fd9291..b5c7f95bdd57 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bonnie++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bonnie++.md @@ -6,6 +6,10 @@ hide: Bonnie++ ======== + +Bonnie++-1.97: Enhanced performance Test of Filesystem I/O + +https://www.coker.com.au/bonnie++ # Available modules @@ -17,8 +21,8 @@ To start using Bonnie++, load one of these modules using a `module load` command module load Bonnie++/2.00a-GCC-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bonnie++/2.00a-GCC-10.3.0|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bonnie++/2.00a-GCC-10.3.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.MPI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.MPI.md index d951b604e873..0cdc0cb84937 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.MPI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.MPI.md @@ -6,6 +6,10 @@ hide: Boost.MPI ========= + +Boost provides free peer-reviewed portable C++ source libraries. + +https://www.boost.org/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which Boost.MPI installations are available per HPC-UGe To start using Boost.MPI, load one of these modules using a `module load` command like: ```shell -module load Boost.MPI/1.79.0-gompi-2022a +module load Boost.MPI/1.81.0-gompi-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Boost.MPI/1.79.0-gompi-2022a|-|x|x|x|x|x|x|x| -|Boost.MPI/1.77.0-gompi-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Boost.MPI/1.81.0-gompi-2022b|x|x|x|x|x|x| +|Boost.MPI/1.79.0-gompi-2022a|-|x|x|x|x|x| +|Boost.MPI/1.77.0-gompi-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python-NumPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python-NumPy.md index 5bf94c5db480..94594e01fe28 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python-NumPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python-NumPy.md @@ -6,6 +6,10 @@ hide: Boost.Python-NumPy ================== + +Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language. + +https://boostorg.github.io/python # Available modules @@ -17,8 +21,8 @@ To start using Boost.Python-NumPy, load one of these modules using a `module loa module load Boost.Python-NumPy/1.79.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Boost.Python-NumPy/1.79.0-foss-2022a|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Boost.Python-NumPy/1.79.0-foss-2022a|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python.md index 04f5579b0805..63b0dfc8b424 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.Python.md @@ -6,6 +6,10 @@ hide: Boost.Python ============ + +Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language. + +https://boostorg.github.io/python # Available modules @@ -17,11 +21,11 @@ To start using Boost.Python, load one of these modules using a `module load` com module load Boost.Python/1.79.0-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Boost.Python/1.79.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|Boost.Python/1.77.0-GCC-11.2.0|x|x|x|-|x|x|x|x| -|Boost.Python/1.72.0-iimpi-2020a|-|x|x|-|x|x|x|x| -|Boost.Python/1.71.0-gompi-2019b|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Boost.Python/1.79.0-GCC-11.3.0|x|x|x|x|x|x| +|Boost.Python/1.77.0-GCC-11.2.0|x|x|x|-|x|x| +|Boost.Python/1.72.0-iimpi-2020a|-|x|x|-|x|x| +|Boost.Python/1.71.0-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.md index c089478e1d55..226f91e2241d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Boost.md @@ -6,6 +6,10 @@ hide: Boost ===== + +Boost provides free peer-reviewed portable C++ source libraries. + +https://www.boost.org/ # Available modules @@ -14,24 +18,26 @@ The overview below shows which Boost installations are available per HPC-UGent T To start using Boost, load one of these modules using a `module load` command like: ```shell -module load Boost/1.81.0-GCC-12.2.0 +module load Boost/1.82.0-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Boost/1.81.0-GCC-12.2.0|x|x|x|x|x|x|x|x| -|Boost/1.79.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|Boost/1.79.0-GCC-11.2.0|x|x|x|x|x|x|x|x| -|Boost/1.77.0-intel-compilers-2021.4.0|x|x|x|x|x|x|x|x| -|Boost/1.77.0-GCC-11.2.0|x|x|x|x|x|x|x|x| -|Boost/1.76.0-intel-compilers-2021.2.0|-|x|x|-|x|x|x|x| -|Boost/1.76.0-GCC-10.3.0|x|x|x|x|x|x|x|x| -|Boost/1.74.0-iccifort-2020.4.304|-|x|x|x|x|x|x|x| -|Boost/1.74.0-GCC-10.2.0|x|x|x|x|x|x|x|x| -|Boost/1.72.0-iompi-2020a|-|x|-|-|-|-|-|-| -|Boost/1.72.0-iimpi-2020a|x|x|x|x|x|x|x|x| -|Boost/1.72.0-gompi-2020a|-|x|x|-|x|x|x|x| -|Boost/1.71.0-iimpi-2019b|-|x|x|-|x|x|-|x| -|Boost/1.71.0-gompi-2019b|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Boost/1.82.0-GCC-12.3.0|x|x|x|x|x|x| +|Boost/1.81.0-GCC-12.2.0|x|x|x|x|x|x| +|Boost/1.79.0-GCC-11.3.0|x|x|x|x|x|x| +|Boost/1.79.0-GCC-11.2.0|x|x|x|x|x|x| +|Boost/1.77.0-intel-compilers-2021.4.0|x|x|x|x|x|x| +|Boost/1.77.0-GCC-11.2.0|x|x|x|x|x|x| +|Boost/1.76.0-intel-compilers-2021.2.0|-|x|x|-|x|x| +|Boost/1.76.0-GCC-10.3.0|x|x|x|x|x|x| +|Boost/1.75.0-GCC-11.2.0|x|x|x|x|x|x| +|Boost/1.74.0-iccifort-2020.4.304|-|x|x|x|x|x| +|Boost/1.74.0-GCC-10.2.0|x|x|x|x|x|x| +|Boost/1.72.0-iompi-2020a|-|x|-|-|-|-| +|Boost/1.72.0-iimpi-2020a|x|x|x|x|x|x| +|Boost/1.72.0-gompi-2020a|-|x|x|-|x|x| +|Boost/1.71.0-iimpi-2019b|-|x|x|-|x|x| +|Boost/1.71.0-gompi-2019b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bottleneck.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bottleneck.md index f0b04eb48d09..eef22488700a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bottleneck.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bottleneck.md @@ -6,6 +6,10 @@ hide: Bottleneck ========== + +Fast NumPy array functions written in C + +https://kwgoodman.github.io/bottleneck-doc # Available modules @@ -17,8 +21,8 @@ To start using Bottleneck, load one of these modules using a `module load` comma module load Bottleneck/1.3.2-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bottleneck/1.3.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bottleneck/1.3.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie.md index 8aafb03089cc..4054f2e4beac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie.md @@ -6,6 +6,10 @@ hide: Bowtie ====== + +Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome. + +http://bowtie-bio.sourceforge.net/index.shtml # Available modules @@ -17,12 +21,12 @@ To start using Bowtie, load one of these modules using a `module load` command l module load Bowtie/1.3.1-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bowtie/1.3.1-GCC-11.3.0|x|x|x|x|x|x|x|x| -|Bowtie/1.3.1-GCC-11.2.0|x|x|x|-|x|x|x|x| -|Bowtie/1.3.0-GCC-10.2.0|-|x|x|-|x|-|x|-| -|Bowtie/1.2.3-iccifort-2019.5.281|-|x|-|-|-|-|-|-| -|Bowtie/1.2.3-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bowtie/1.3.1-GCC-11.3.0|x|x|x|x|x|x| +|Bowtie/1.3.1-GCC-11.2.0|x|x|x|x|x|x| +|Bowtie/1.3.0-GCC-10.2.0|-|x|x|-|x|-| +|Bowtie/1.2.3-iccifort-2019.5.281|-|x|-|-|-|-| +|Bowtie/1.2.3-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie2.md index 03c535f82a8c..147e88609600 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bowtie2.md @@ -6,6 +6,10 @@ hide: Bowtie2 ======= + +Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. + +http://bowtie-bio.sourceforge.net/bowtie2/index.shtml # Available modules @@ -17,13 +21,13 @@ To start using Bowtie2, load one of these modules using a `module load` command module load Bowtie2/2.4.5-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bowtie2/2.4.5-GCC-11.3.0|x|x|x|x|x|x|x|x| -|Bowtie2/2.4.4-GCC-11.2.0|x|x|x|-|x|x|x|x| -|Bowtie2/2.4.2-GCC-10.2.0|-|x|x|x|x|x|x|x| -|Bowtie2/2.4.1-GCC-9.3.0|-|x|x|-|x|x|x|x| -|Bowtie2/2.3.5.1-iccifort-2019.5.281|-|x|-|-|-|-|-|-| -|Bowtie2/2.3.5.1-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bowtie2/2.4.5-GCC-11.3.0|x|x|x|x|x|x| +|Bowtie2/2.4.4-GCC-11.2.0|x|x|x|-|x|x| +|Bowtie2/2.4.2-GCC-10.2.0|-|x|x|x|x|x| +|Bowtie2/2.4.1-GCC-9.3.0|-|x|x|-|x|x| +|Bowtie2/2.3.5.1-iccifort-2019.5.281|-|x|-|-|-|-| +|Bowtie2/2.3.5.1-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Bracken.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Bracken.md index 110b6ca603d5..3a05b4651f85 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Bracken.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Bracken.md @@ -6,6 +6,10 @@ hide: Bracken ======= + +Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. Braken uses the taxonomy labels assigned by Kraken, a highly accurate metagenomics classification algorithm, to estimate the number of reads originating from each species present in a sample. Kraken classifies reads to the best matching location in the taxonomic tree, but does not estimate abundances of species. We use the Kraken database itself to derive probabilities that describe how much sequence from each genome is identical to other genomes in the database, and combine this information with the assignments for a particular sample to estimate abundance at the species level, the genus level, or above. Combined with the Kraken classifier, Bracken produces accurate species- and genus-level abundance estimates even when a sample contains two or more near-identical species.NOTE: Bracken is compatible with both Kraken 1 and Kraken 2. However, the default kmer length is different depending on the version of Kraken used. If you use Kraken 1 defaults, specify 31 as the kmer length. If you use Kraken 2 defaults, specify 35 as the kmer length. + +https://ccb.jhu.edu/software/bracken/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which Bracken installations are available per HPC-UGent To start using Bracken, load one of these modules using a `module load` command like: ```shell -module load Bracken/2.7-GCCcore-11.2.0 +module load Bracken/2.9-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Bracken/2.7-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Bracken/2.9-GCCcore-10.3.0|x|x|x|x|x|x| +|Bracken/2.7-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli-python.md index 68d624a0c26b..3a50d759724b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli-python.md @@ -6,6 +6,10 @@ hide: Brotli-python ============= + +Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression.The specification of the Brotli Compressed Data Format is defined in RFC 7932. + +https://github.com/google/brotli # Available modules @@ -17,9 +21,9 @@ To start using Brotli-python, load one of these modules using a `module load` co module load Brotli-python/1.0.9-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Brotli-python/1.0.9-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Brotli-python/1.0.9-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Brotli-python/1.0.9-GCCcore-11.3.0|x|x|x|x|x|x| +|Brotli-python/1.0.9-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli.md index ff861a3fd434..b645a6ed6a89 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Brotli.md @@ -6,6 +6,10 @@ hide: Brotli ====== + +Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression.The specification of the Brotli Compressed Data Format is defined in RFC 7932. + +https://github.com/google/brotli # Available modules @@ -14,16 +18,17 @@ The overview below shows which Brotli installations are available per HPC-UGent To start using Brotli, load one of these modules using a `module load` command like: ```shell -module load Brotli/1.0.9-GCCcore-12.3.0 +module load Brotli/1.1.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Brotli/1.0.9-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Brotli/1.0.9-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Brotli/1.0.9-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Brotli/1.0.9-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Brotli/1.0.9-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Brotli/1.0.9-GCCcore-10.2.0|x|-|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Brotli/1.1.0-GCCcore-13.2.0|x|x|x|x|x|x| +|Brotli/1.0.9-GCCcore-12.3.0|x|x|x|x|x|x| +|Brotli/1.0.9-GCCcore-12.2.0|x|x|x|x|x|x| +|Brotli/1.0.9-GCCcore-11.3.0|x|x|x|x|x|x| +|Brotli/1.0.9-GCCcore-11.2.0|x|x|x|x|x|x| +|Brotli/1.0.9-GCCcore-10.3.0|x|x|x|x|x|x| +|Brotli/1.0.9-GCCcore-10.2.0|x|-|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Brunsli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Brunsli.md index e3080e748461..2a780b38c6b8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Brunsli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Brunsli.md @@ -6,6 +6,10 @@ hide: Brunsli ======= + +Brunsli is a lossless JPEG repacking library. + +https://github.com/google/brunsli/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which Brunsli installations are available per HPC-UGent To start using Brunsli, load one of these modules using a `module load` command like: ```shell -module load Brunsli/0.1-GCCcore-12.2.0 +module load Brunsli/0.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Brunsli/0.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Brunsli/0.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Brunsli/0.1-GCCcore-12.3.0|x|x|x|x|x|x| +|Brunsli/0.1-GCCcore-12.2.0|x|x|x|x|x|x| +|Brunsli/0.1-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CASPR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CASPR.md index 476cdc946ad6..ff0ee3ec8e24 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CASPR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CASPR.md @@ -6,6 +6,10 @@ hide: CASPR ===== + +Running CASPR is extremely easy and convenient to analyze CRIPR-Cas9 screens using pgRNAs. + +https://judithbergada.github.io/CASPR # Available modules @@ -17,8 +21,8 @@ To start using CASPR, load one of these modules using a `module load` command li module load CASPR/20200730-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CASPR/20200730-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CASPR/20200730-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CCL.md index 24517018edc5..2296ffff6548 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CCL.md @@ -6,6 +6,10 @@ hide: CCL === + +Clozure CL (often called CCL for short) is a free Common Lisp implementation with a long history. Some distinguishing features of the implementation include fast compilation speed, native threads, a precise, generational, compacting garbage collector, and a convenient foreign-function interface. + +https://ccl.clozure.com/ # Available modules @@ -17,8 +21,8 @@ To start using CCL, load one of these modules using a `module load` command like module load CCL/1.12.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CCL/1.12.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CCL/1.12.1-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CD-HIT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CD-HIT.md index 1d9ddb6479ee..fd1440067e57 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CD-HIT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CD-HIT.md @@ -6,6 +6,10 @@ hide: CD-HIT ====== + +CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences. + +https://github.com/weizhongli/cdhit # Available modules @@ -17,12 +21,13 @@ To start using CD-HIT, load one of these modules using a `module load` command l module load CD-HIT/4.8.1-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CD-HIT/4.8.1-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|CD-HIT/4.8.1-GCC-11.2.0|x|x|x|-|x|x|x|x| -|CD-HIT/4.8.1-GCC-10.2.0|-|x|x|x|x|x|x|x| -|CD-HIT/4.8.1-GCC-9.3.0|-|x|x|-|x|x|x|x| -|CD-HIT/4.8.1-GCC-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CD-HIT/4.8.1-iccifort-2019.5.281|-|x|x|-|x|x| +|CD-HIT/4.8.1-GCC-12.2.0|x|x|x|x|x|x| +|CD-HIT/4.8.1-GCC-11.2.0|x|x|x|-|x|x| +|CD-HIT/4.8.1-GCC-10.2.0|-|x|x|x|x|x| +|CD-HIT/4.8.1-GCC-9.3.0|-|x|x|-|x|x| +|CD-HIT/4.8.1-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CDAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CDAT.md index 7490430d523d..11f781c221d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CDAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CDAT.md @@ -6,6 +6,10 @@ hide: CDAT ==== + +CDAT is a powerful and complete front-end to a rich set of visual-data exploration and analysis capabilities well suited for data analysis problems. + +https://github.com/CDAT/cdat # Available modules @@ -17,8 +21,15 @@ To start using CDAT, load one of these modules using a `module load` command lik module load CDAT/8.2.1-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CDAT/8.2.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### CDAT/8.2.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CDAT/8.2.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +cdat_info-8.2.1, cdms2-3.1.5, cdtime-3.1.4, cdutil-8.2.1, distarray-2.12.2, dv3d-8.2.1, eofs-1.4.0, genutil-8.2.1, lazy-object-proxy-1.5.2, pycf-1.6.9, thermo-8.1, unidata-2.8, vcs-8.2.1, vcsaddons-8.2.1, wk-8.2.1, xmgrace-2.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CDBtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CDBtools.md index f0415aff1ae7..75f726b575d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CDBtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CDBtools.md @@ -6,6 +6,10 @@ hide: CDBtools ======== + +CDB (Constant DataBase) indexing and retrieval tools for FASTA files + +http://compbio.dfci.harvard.edu/tgi # Available modules @@ -17,8 +21,8 @@ To start using CDBtools, load one of these modules using a `module load` command module load CDBtools/0.99-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CDBtools/0.99-GCC-10.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CDBtools/0.99-GCC-10.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CDO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CDO.md index d9b5abbecbd9..8c4d72f19d38 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CDO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CDO.md @@ -6,6 +6,10 @@ hide: CDO === + +CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data. + +https://code.zmaw.de/projects/cdo # Available modules @@ -17,10 +21,10 @@ To start using CDO, load one of these modules using a `module load` command like module load CDO/2.0.5-gompi-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CDO/2.0.5-gompi-2021b|x|x|x|x|x|x|x|x| -|CDO/1.9.10-gompi-2021a|x|x|x|-|x|x|x|x| -|CDO/1.9.8-intel-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CDO/2.0.5-gompi-2021b|x|x|x|x|x|x| +|CDO/1.9.10-gompi-2021a|x|x|x|-|x|x| +|CDO/1.9.8-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CENSO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CENSO.md new file mode 100644 index 000000000000..b4e7a9f2749a --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CENSO.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +CENSO +===== + + +Commandline Energetic SOrting (CENSO) is a sorting algorithm for efficient evaluation of Structure Ensembles (SE). The input ensemble (or single structure) originating from a CREST[SQM/FF] run can be ranked by free energy at DFT level and/or geometries can be optimized using DFT. + +https://xtb-docs.readthedocs.io/en/latest/CENSO_docs/censo.html +# Available modules + + +The overview below shows which CENSO installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using CENSO, load one of these modules using a `module load` command like: + +```shell +module load CENSO/1.2.0-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CENSO/1.2.0-GCCcore-12.3.0|x|x|x|x|x|x| + + +### CENSO/1.2.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +CENSO-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CESM-deps.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CESM-deps.md index ed10fdb9ca11..caa2b4bdade6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CESM-deps.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CESM-deps.md @@ -6,6 +6,10 @@ hide: CESM-deps ========= + +CESM is a fully-coupled, community, global climate model thatprovides state-of-the-art computer simulations of the Earth's past, present,and future climate states. + +https://www.cesm.ucar.edu/models/cesm2/ # Available modules @@ -17,8 +21,8 @@ To start using CESM-deps, load one of these modules using a `module load` comman module load CESM-deps/2-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CESM-deps/2-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CESM-deps/2-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CFDEMcoupling.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CFDEMcoupling.md index 7a6a4fde76ac..40998223dfc7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CFDEMcoupling.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CFDEMcoupling.md @@ -6,6 +6,10 @@ hide: CFDEMcoupling ============= + +CFDEMcoupling is an open source CFD-DEM engine. It provides the possibility to couple the DEM engine LIGGGHTS to a CFD framework. + +https://www.cfdem.com/cfdemrcoupling-open-source-cfd-dem-framework # Available modules @@ -17,8 +21,8 @@ To start using CFDEMcoupling, load one of these modules using a `module load` co module load CFDEMcoupling/3.8.0-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CFDEMcoupling/3.8.0-foss-2019b|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CFDEMcoupling/3.8.0-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CFITSIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CFITSIO.md index 4a297a266d03..8edc76e395ed 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CFITSIO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CFITSIO.md @@ -6,6 +6,10 @@ hide: CFITSIO ======= + +CFITSIO is a library of C and Fortran subroutines for reading and writing data files inFITS (Flexible Image Transport System) data format. + +https://heasarc.gsfc.nasa.gov/fitsio/ # Available modules @@ -14,15 +18,16 @@ The overview below shows which CFITSIO installations are available per HPC-UGent To start using CFITSIO, load one of these modules using a `module load` command like: ```shell -module load CFITSIO/4.2.0-GCCcore-12.2.0 +module load CFITSIO/4.3.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CFITSIO/4.2.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|CFITSIO/4.2.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|CFITSIO/4.1.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|CFITSIO/3.49-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|CFITSIO/3.47-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CFITSIO/4.3.0-GCCcore-12.3.0|x|x|x|x|x|x| +|CFITSIO/4.2.0-GCCcore-12.2.0|x|x|x|x|x|x| +|CFITSIO/4.2.0-GCCcore-11.3.0|x|x|x|x|x|x| +|CFITSIO/4.1.0-GCCcore-11.3.0|x|x|x|x|x|x| +|CFITSIO/3.49-GCCcore-11.2.0|x|x|x|x|x|x| +|CFITSIO/3.47-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CGAL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CGAL.md index c1e6b4964098..1dca143d8bbe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CGAL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CGAL.md @@ -6,6 +6,10 @@ hide: CGAL ==== + +The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library. + +https://www.cgal.org/ # Available modules @@ -14,19 +18,21 @@ The overview below shows which CGAL installations are available per HPC-UGent Ti To start using CGAL, load one of these modules using a `module load` command like: ```shell -module load CGAL/5.2-iimpi-2020b +module load CGAL/5.6-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CGAL/5.2-iimpi-2020b|-|x|-|-|-|-|-|-| -|CGAL/5.2-gompi-2020b|x|x|x|x|x|x|x|x| -|CGAL/4.14.3-iimpi-2021a|-|x|x|-|x|x|x|x| -|CGAL/4.14.3-gompi-2022a|x|x|x|x|x|x|x|x| -|CGAL/4.14.3-gompi-2021b|x|x|x|x|x|x|x|x| -|CGAL/4.14.3-gompi-2021a|x|x|x|x|x|x|x|x| -|CGAL/4.14.3-gompi-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|CGAL/4.14.1-foss-2019b-Python-3.7.4|x|x|x|-|x|x|x|x| -|CGAL/4.14.1-foss-2019b-Python-2.7.16|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CGAL/5.6-GCCcore-12.3.0|x|x|x|x|x|x| +|CGAL/5.5.2-GCCcore-12.2.0|x|x|x|x|x|x| +|CGAL/5.2-iimpi-2020b|-|x|-|-|-|-| +|CGAL/5.2-gompi-2020b|x|x|x|x|x|x| +|CGAL/4.14.3-iimpi-2021a|-|x|x|-|x|x| +|CGAL/4.14.3-gompi-2022a|x|x|x|x|x|x| +|CGAL/4.14.3-gompi-2021b|x|x|x|x|x|x| +|CGAL/4.14.3-gompi-2021a|x|x|x|x|x|x| +|CGAL/4.14.3-gompi-2020a-Python-3.8.2|-|x|x|-|x|x| +|CGAL/4.14.1-foss-2019b-Python-3.7.4|x|x|x|-|x|x| +|CGAL/4.14.1-foss-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CGmapTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CGmapTools.md index 5063e4906c98..5353ad9ad204 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CGmapTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CGmapTools.md @@ -6,6 +6,10 @@ hide: CGmapTools ========== + +Command-line Toolset for Bisulfite Sequencing Data Analysis + +https://cgmaptools.github.io/ # Available modules @@ -17,8 +21,8 @@ To start using CGmapTools, load one of these modules using a `module load` comma module load CGmapTools/0.1.2-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CGmapTools/0.1.2-intel-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CGmapTools/0.1.2-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRCexplorer2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRCexplorer2.md index 098c96a726aa..baf564e142da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRCexplorer2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRCexplorer2.md @@ -6,6 +6,10 @@ hide: CIRCexplorer2 ============= + +CIRCexplorer2 is a comprehensive and integrative circular RNA analysis toolset. + +http://circexplorer2.readthedocs.io/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which CIRCexplorer2 installations are available per HPC To start using CIRCexplorer2, load one of these modules using a `module load` command like: ```shell -module load CIRCexplorer2/2.3.8-foss-2020b-Python-2.7.18 +module load CIRCexplorer2/2.3.8-foss-2021b-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CIRCexplorer2/2.3.8-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CIRCexplorer2/2.3.8-foss-2021b-Python-2.7.18|x|x|x|x|x|x| +|CIRCexplorer2/2.3.8-foss-2020b-Python-2.7.18|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRI-long.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRI-long.md index e3edf0a07cd3..a372bc046d09 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRI-long.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRI-long.md @@ -6,6 +6,10 @@ hide: CIRI-long ========= + +Circular RNA Identification for Long-Reads Nanopore Sequencing Data + +https://github.com/bioinfo-biols/CIRI-long/ # Available modules @@ -17,8 +21,15 @@ To start using CIRI-long, load one of these modules using a `module load` comman module load CIRI-long/1.0.2-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CIRI-long/1.0.2-foss-2020b|-|x|x|x|x|x| + + +### CIRI-long/1.0.2-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CIRI-long/1.0.2-foss-2020b|-|x|x|x|x|x|x|x| +bwapy-0.1.4, CIRI-long-1.0.2, mappy-2.17 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CIRIquant.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRIquant.md new file mode 100644 index 000000000000..2308473a8fa8 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CIRIquant.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +CIRIquant +========= + + +CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data + +https://github.com/bioinfo-biols/CIRIquant +# Available modules + + +The overview below shows which CIRIquant installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using CIRIquant, load one of these modules using a `module load` command like: + +```shell +module load CIRIquant/1.1.2-20221201-foss-2021b-Python-2.7.18 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CIRIquant/1.1.2-20221201-foss-2021b-Python-2.7.18|x|x|x|x|x|x| + + +### CIRIquant/1.1.2-20221201-foss-2021b-Python-2.7.18 + +This is a list of extensions included in the module: + +argparse-1.4.0, CIRIquant-1.1.2-20221201 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CITE-seq-Count.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CITE-seq-Count.md index 92d175c4fb56..5726d1c63f18 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CITE-seq-Count.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CITE-seq-Count.md @@ -6,6 +6,10 @@ hide: CITE-seq-Count ============== + +A python package that allows to count antibody TAGS from a CITE-seq and/or cell hashing experiment. + +https://github.com/Hoohm/CITE-seq-Count # Available modules @@ -17,8 +21,15 @@ To start using CITE-seq-Count, load one of these modules using a `module load` c module load CITE-seq-Count/1.4.3-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CITE-seq-Count/1.4.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### CITE-seq-Count/1.4.3-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CITE-seq-Count/1.4.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +CITE-seq-Count-1.4.3, dill-0.3.1.1, multiprocess-0.70.9, pybktree-1.1, pytest-dependency-0.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CLEAR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CLEAR.md new file mode 100644 index 000000000000..b1120df53773 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CLEAR.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +CLEAR +===== + + +Direct comparison of circular and linear RNA expression + +https://github.com/YangLab/CLEAR +# Available modules + + +The overview below shows which CLEAR installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using CLEAR, load one of these modules using a `module load` command like: + +```shell +module load CLEAR/20210117-foss-2021b-Python-2.7.18 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CLEAR/20210117-foss-2021b-Python-2.7.18|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CLHEP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CLHEP.md index 1bec8a8ede46..71a90bfdd13e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CLHEP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CLHEP.md @@ -6,6 +6,10 @@ hide: CLHEP ===== + +The CLHEP project is intended to be a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra. CLHEP is structured in a set of packages independent of any external package. + +https://proj-clhep.web.cern.ch/proj-clhep/ # Available modules @@ -17,12 +21,12 @@ To start using CLHEP, load one of these modules using a `module load` command li module load CLHEP/2.4.6.4-GCC-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CLHEP/2.4.6.4-GCC-12.2.0|x|x|x|x|x|x|x|x| -|CLHEP/2.4.5.3-GCC-11.3.0|x|x|x|x|x|x|x|x| -|CLHEP/2.4.5.1-GCC-11.2.0|x|x|x|x|x|x|x|x| -|CLHEP/2.4.4.0-GCC-11.2.0|x|x|x|x|x|x|x|x| -|CLHEP/2.4.1.3-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CLHEP/2.4.6.4-GCC-12.2.0|x|x|x|x|x|x| +|CLHEP/2.4.5.3-GCC-11.3.0|x|x|x|x|x|x| +|CLHEP/2.4.5.1-GCC-11.2.0|x|x|x|x|x|x| +|CLHEP/2.4.4.0-GCC-11.2.0|x|x|x|x|x|x| +|CLHEP/2.4.1.3-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CMAverse.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CMAverse.md index 9ae3a2b0c5d7..e09ca7a5eeea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CMAverse.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CMAverse.md @@ -6,6 +6,10 @@ hide: CMAverse ======== + +The R package CMAverse provides a suite of functions for reproducible causal mediation analysisincluding cmdag for DAG visualization, cmest for statistical modeling and cmsens for sensitivity analysis. + +https://bs1125.github.io/CMAverse/ # Available modules @@ -17,8 +21,8 @@ To start using CMAverse, load one of these modules using a `module load` command module load CMAverse/20220112-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CMAverse/20220112-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CMAverse/20220112-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CMSeq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CMSeq.md index d6d4d17e2e4f..fac98cfff36f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CMSeq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CMSeq.md @@ -6,6 +6,10 @@ hide: CMSeq ===== + +CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus. + +https://github.com/SegataLab/cmseq/ # Available modules @@ -17,8 +21,8 @@ To start using CMSeq, load one of these modules using a `module load` command li module load CMSeq/1.0.4-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CMSeq/1.0.4-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CMSeq/1.0.4-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CMake.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CMake.md index 11a3cb631b2b..a5b7a3e6f432 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CMake.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CMake.md @@ -6,6 +6,10 @@ hide: CMake ===== + +CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software. + +https://www.cmake.org # Available modules @@ -14,24 +18,25 @@ The overview below shows which CMake installations are available per HPC-UGent T To start using CMake, load one of these modules using a `module load` command like: ```shell -module load CMake/3.26.3-GCCcore-12.3.0 +module load CMake/3.27.6-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CMake/3.26.3-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|CMake/3.24.3-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|CMake/3.24.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|CMake/3.23.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|CMake/3.22.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|CMake/3.21.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|CMake/3.20.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|CMake/3.20.1-GCCcore-10.2.0|x|-|-|-|-|-|-|-| -|CMake/3.18.4-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|CMake/3.16.4-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|CMake/3.15.3-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|CMake/3.13.3-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|CMake/3.12.1|x|x|x|x|x|x|x|x| -|CMake/3.11.4-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CMake/3.27.6-GCCcore-13.2.0|x|x|x|x|x|x| +|CMake/3.26.3-GCCcore-12.3.0|x|x|x|x|x|x| +|CMake/3.24.3-GCCcore-12.2.0|x|x|x|x|x|x| +|CMake/3.24.3-GCCcore-11.3.0|x|x|x|x|x|x| +|CMake/3.23.1-GCCcore-11.3.0|x|x|x|x|x|x| +|CMake/3.22.1-GCCcore-11.2.0|x|x|x|x|x|x| +|CMake/3.21.1-GCCcore-11.2.0|x|x|x|x|x|x| +|CMake/3.20.1-GCCcore-10.3.0|x|x|x|x|x|x| +|CMake/3.20.1-GCCcore-10.2.0|x|-|-|-|-|-| +|CMake/3.18.4-GCCcore-10.2.0|x|x|x|x|x|x| +|CMake/3.16.4-GCCcore-9.3.0|x|x|x|x|x|x| +|CMake/3.15.3-GCCcore-8.3.0|x|x|x|x|x|x| +|CMake/3.13.3-GCCcore-8.2.0|-|x|-|-|-|-| +|CMake/3.12.1|x|x|x|x|x|x| +|CMake/3.11.4-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/COLMAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/COLMAP.md new file mode 100644 index 000000000000..44c11e113408 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/COLMAP.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +COLMAP +====== + + +COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipelinewith a graphical and command-line interface + +https://colmap.github.io +# Available modules + + +The overview below shows which COLMAP installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using COLMAP, load one of these modules using a `module load` command like: + +```shell +module load COLMAP/3.8-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|COLMAP/3.8-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CONCOCT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CONCOCT.md index 84ed1b66f167..1d61518593b8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CONCOCT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CONCOCT.md @@ -6,6 +6,10 @@ hide: CONCOCT ======= + +Clustering cONtigs with COverage and ComposiTion (CONCOCT) is aprogram for unsupervised binning of metagenomic contigs by using nucleotidecomposition, coverage data in multiple samples and linkage data from paired endreads. + +https://concoct.readthedocs.io # Available modules @@ -17,8 +21,8 @@ To start using CONCOCT, load one of these modules using a `module load` command module load CONCOCT/1.1.0-foss-2020b-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CONCOCT/1.1.0-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CONCOCT/1.1.0-foss-2020b-Python-2.7.18|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CP2K.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CP2K.md index 86a60faf37cb..931e229693a1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CP2K.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CP2K.md @@ -6,6 +6,10 @@ hide: CP2K ==== + +CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. + +https://www.cp2k.org/ # Available modules @@ -14,23 +18,24 @@ The overview below shows which CP2K installations are available per HPC-UGent Ti To start using CP2K, load one of these modules using a `module load` command like: ```shell -module load CP2K/2023.1-foss-2022b +module load CP2K/2023.1-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CP2K/2023.1-foss-2022b|x|x|x|x|x|x|x|x| -|CP2K/2022.1-foss-2022a|x|x|x|x|x|x|x|x| -|CP2K/9.1-foss-2022a|x|x|x|x|x|x|x|x| -|CP2K/8.2-foss-2021a|-|x|x|x|x|-|x|-| -|CP2K/8.1-foss-2020b|-|x|x|x|x|-|x|-| -|CP2K/7.1-intel-2020a|-|x|x|-|x|x|x|x| -|CP2K/7.1-foss-2020a|-|x|x|-|x|x|x|x| -|CP2K/6.1-intel-2020a|-|x|x|-|x|x|x|x| -|CP2K/5.1-iomkl-2020a|-|x|-|-|-|-|-|-| -|CP2K/5.1-intel-2020a-O1|-|x|-|-|-|-|-|-| -|CP2K/5.1-intel-2020a|-|x|x|-|x|x|x|x| -|CP2K/5.1-intel-2019b|-|x|-|-|-|-|-|-| -|CP2K/5.1-foss-2020a|-|x|-|-|-|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CP2K/2023.1-foss-2023a|x|x|x|x|x|x| +|CP2K/2023.1-foss-2022b|x|x|x|x|x|x| +|CP2K/2022.1-foss-2022a|x|x|x|x|x|x| +|CP2K/9.1-foss-2022a|x|x|x|x|x|x| +|CP2K/8.2-foss-2021a|-|x|x|x|x|-| +|CP2K/8.1-foss-2020b|-|x|x|x|x|-| +|CP2K/7.1-intel-2020a|-|x|x|-|x|x| +|CP2K/7.1-foss-2020a|-|x|x|-|x|x| +|CP2K/6.1-intel-2020a|-|x|x|-|x|x| +|CP2K/5.1-iomkl-2020a|-|x|-|-|-|-| +|CP2K/5.1-intel-2020a-O1|-|x|-|-|-|-| +|CP2K/5.1-intel-2020a|-|x|x|-|x|x| +|CP2K/5.1-intel-2019b|-|x|-|-|-|-| +|CP2K/5.1-foss-2020a|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CPC2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CPC2.md index 6b48f76b7549..19053a533f29 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CPC2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CPC2.md @@ -6,6 +6,10 @@ hide: CPC2 ==== + +a fast and accurate coding potential calculator based on sequence intrinsic features + +http://cpc2.gao-lab.org/ # Available modules @@ -17,8 +21,8 @@ To start using CPC2, load one of these modules using a `module load` command lik module load CPC2/1.0.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CPC2/1.0.1-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CPC2/1.0.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CPLEX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CPLEX.md index 9f5f1901c38c..1de5a620c8b4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CPLEX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CPLEX.md @@ -6,6 +6,10 @@ hide: CPLEX ===== + +IBM ILOG CPLEX Optimizer's mathematical programming technology enables analytical decision support for improving efficiency, reducing costs, and increasing profitability. + +https://www.ibm.com/analytics/cplex-optimizer # Available modules @@ -17,8 +21,8 @@ To start using CPLEX, load one of these modules using a `module load` command li module load CPLEX/12.10-GCCcore-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CPLEX/12.10-GCCcore-8.3.0-Python-3.7.4|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CPLEX/12.10-GCCcore-8.3.0-Python-3.7.4|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CPPE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CPPE.md index f4a9740c29c9..9136f15e7371 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CPPE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CPPE.md @@ -6,6 +6,10 @@ hide: CPPE ==== + +CPPE is an open-source, light-weight C++ and Python library for PolarizableEmbedding (PE)1,2 calculations. It provides an easy-to-use API to implement PEfor ground-state self-consistent field (SCF) calculations and post-SCF methods.A convenient Python interface is also available. + +https://github.com/maxscheurer/cppe # Available modules @@ -14,11 +18,25 @@ The overview below shows which CPPE installations are available per HPC-UGent Ti To start using CPPE, load one of these modules using a `module load` command like: ```shell -module load CPPE/0.3.1-GCC-11.3.0 +module load CPPE/0.3.1-GCC-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CPPE/0.3.1-GCC-12.2.0|x|x|x|x|x|x| +|CPPE/0.3.1-GCC-11.3.0|-|x|x|x|x|x| + + +### CPPE/0.3.1-GCC-12.2.0 + +This is a list of extensions included in the module: + +cppe-0.3.1 + +### CPPE/0.3.1-GCC-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CPPE/0.3.1-GCC-11.3.0|-|x|x|x|x|x|x|x| +cppe-0.3.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CREST.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CREST.md new file mode 100644 index 000000000000..0492a79d1917 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CREST.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +CREST +===== + + +CREST is an utility/driver program for the xtb program. Originally it was designed as conformer sampling program, hence the abbreviation Conformer–Rotamer Ensemble Sampling Tool, but now offers also some utility functions for calculations with the GFNn–xTB methods. Generally the program functions as an IO based OMP scheduler (i.e., calculations are performed by the xtb program) and tool for the creation and analysation of structure ensembles. + +https://xtb-docs.readthedocs.io/en/latest/crest.html +# Available modules + + +The overview below shows which CREST installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using CREST, load one of these modules using a `module load` command like: + +```shell +module load CREST/2.12-gfbf-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CREST/2.12-gfbf-2023a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPR-DAV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPR-DAV.md index 3ade71a7dbc7..4abda39af459 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPR-DAV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPR-DAV.md @@ -6,6 +6,10 @@ hide: CRISPR-DAV ========== + +CRISPR-DAV is a pipeline to analyzeamplicon-based NGS data of CRISPR clones in a high throughput manner. + +https://github.com/pinetree1/crispr-dav/ # Available modules @@ -17,8 +21,8 @@ To start using CRISPR-DAV, load one of these modules using a `module load` comma module load CRISPR-DAV/2.3.4-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CRISPR-DAV/2.3.4-foss-2020b|-|x|x|x|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CRISPR-DAV/2.3.4-foss-2020b|-|x|x|x|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPResso2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPResso2.md index da874cdce6cb..7b52467123a9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPResso2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CRISPResso2.md @@ -6,6 +6,10 @@ hide: CRISPResso2 =========== + +CRISPResso2 is a software pipeline designed to enable rapid andintuitive interpretation of genome editing experiments. + +https://github.com/pinellolab/CRISPResso2/ # Available modules @@ -17,9 +21,9 @@ To start using CRISPResso2, load one of these modules using a `module load` comm module load CRISPResso2/2.2.1-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CRISPResso2/2.2.1-foss-2020b|-|x|x|x|x|x|x|x| -|CRISPResso2/2.1.2-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CRISPResso2/2.2.1-foss-2020b|-|x|x|x|x|x| +|CRISPResso2/2.1.2-foss-2020b-Python-2.7.18|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CRYSTAL17.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CRYSTAL17.md index 9e08595d4202..99aa4c557e6e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CRYSTAL17.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CRYSTAL17.md @@ -6,6 +6,10 @@ hide: CRYSTAL17 ========= + +The CRYSTAL package performs ab initio calculations of the ground state energy, energy gradient, electronic wave function and properties of periodic systems. + +http://www.crystal.unito.it # Available modules @@ -17,8 +21,8 @@ To start using CRYSTAL17, load one of these modules using a `module load` comman module load CRYSTAL17/1.0.2-intel-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CRYSTAL17/1.0.2-intel-2020a|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CRYSTAL17/1.0.2-intel-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CSBDeep.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CSBDeep.md new file mode 100644 index 000000000000..bc41fd366eae --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CSBDeep.md @@ -0,0 +1,42 @@ +--- +hide: + - toc +--- + +CSBDeep +======= + + +CSBDeep is a toolbox for Content-aware Image Restoration (CARE). + +https://csbdeep.bioimagecomputing.com/ +# Available modules + + +The overview below shows which CSBDeep installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using CSBDeep, load one of these modules using a `module load` command like: + +```shell +module load CSBDeep/0.7.4-foss-2022a-CUDA-11.7.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CSBDeep/0.7.4-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|CSBDeep/0.7.4-foss-2022a|x|x|x|x|x|x| + + +### CSBDeep/0.7.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +CSBDeep-0.7.4, tifffile-2023.9.26 + +### CSBDeep/0.7.4-foss-2022a + +This is a list of extensions included in the module: + +CSBDeep-0.7.4, tifffile-2023.9.26 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CUDA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CUDA.md index c2fd34c7bae7..5747078e5dce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CUDA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CUDA.md @@ -6,6 +6,10 @@ hide: CUDA ==== + +CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs. + +https://developer.nvidia.com/cuda-toolkit # Available modules @@ -14,18 +18,19 @@ The overview below shows which CUDA installations are available per HPC-UGent Ti To start using CUDA, load one of these modules using a `module load` command like: ```shell -module load CUDA/11.7.0 +module load CUDA/12.1.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CUDA/11.7.0|x|x|x|x|x|x|x|x| -|CUDA/11.4.1|x|-|-|-|x|-|-|-| -|CUDA/11.3.1|x|x|x|-|x|x|x|x| -|CUDA/11.1.1-iccifort-2020.4.304|-|-|-|-|x|-|-|-| -|CUDA/11.1.1-GCC-10.2.0|x|x|x|x|x|x|x|x| -|CUDA/11.0.2-iccifort-2020.1.217|-|-|-|-|x|-|-|-| -|CUDA/10.1.243-iccifort-2019.5.281|-|-|-|-|x|-|-|-| -|CUDA/10.1.243-GCC-8.3.0|x|-|-|-|x|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CUDA/12.1.1|x|-|x|-|x|-| +|CUDA/11.7.0|x|x|x|x|x|x| +|CUDA/11.4.1|x|-|-|-|x|-| +|CUDA/11.3.1|x|x|x|-|x|x| +|CUDA/11.1.1-iccifort-2020.4.304|-|-|-|-|x|-| +|CUDA/11.1.1-GCC-10.2.0|x|x|x|x|x|x| +|CUDA/11.0.2-iccifort-2020.1.217|-|-|-|-|x|-| +|CUDA/10.1.243-iccifort-2019.5.281|-|-|-|-|x|-| +|CUDA/10.1.243-GCC-8.3.0|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CUDAcore.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CUDAcore.md index a014d4617e3d..9a598aea660c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CUDAcore.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CUDAcore.md @@ -6,6 +6,10 @@ hide: CUDAcore ======== + +CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs. + +https://developer.nvidia.com/cuda-toolkit # Available modules @@ -17,10 +21,10 @@ To start using CUDAcore, load one of these modules using a `module load` command module load CUDAcore/11.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CUDAcore/11.2.1|x|-|x|-|x|-|-|-| -|CUDAcore/11.1.1|x|x|x|x|x|x|x|x| -|CUDAcore/11.0.2|-|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CUDAcore/11.2.1|x|-|x|-|x|-| +|CUDAcore/11.1.1|x|x|x|x|x|x| +|CUDAcore/11.0.2|-|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CUnit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CUnit.md index 90bc7c523dc3..4be5ac38e249 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CUnit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CUnit.md @@ -6,6 +6,10 @@ hide: CUnit ===== + +Automated testing framework for C. + +https://sourceforge.net/projects/cunit/ # Available modules @@ -17,8 +21,8 @@ To start using CUnit, load one of these modules using a `module load` command li module load CUnit/2.1-3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CUnit/2.1-3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CUnit/2.1-3-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CVXOPT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CVXOPT.md index 65f66fbdd7cd..95a9fa154c6b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CVXOPT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CVXOPT.md @@ -6,6 +6,10 @@ hide: CVXOPT ====== + +CVXOPT is a free software package for convex optimization based on the Python programming language. Its main purpose is to make the development of software for convex optimization applications straightforward by building on Python's extensive standard library and on the strengths of Python as a high-level programming language. + +https://cvxopt.org # Available modules @@ -17,9 +21,9 @@ To start using CVXOPT, load one of these modules using a `module load` command l module load CVXOPT/1.3.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CVXOPT/1.3.1-foss-2022a|x|x|x|x|x|x|x|x| -|CVXOPT/1.2.4-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CVXOPT/1.3.1-foss-2022a|x|x|x|x|x|x| +|CVXOPT/1.2.4-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Calib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Calib.md index ebce09bc3f90..0038ba5c7dda 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Calib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Calib.md @@ -6,6 +6,10 @@ hide: Calib ===== + +Calib clusters paired-end reads using their barcodes and sequences. Calib is suitable for ampliconsequencing where a molecule is tagged, then PCR amplified with high depth, also known as Unique Molecule Identifier(UMI) sequencing. + +https://github.com/vpc-ccg/calib # Available modules @@ -17,8 +21,8 @@ To start using Calib, load one of these modules using a `module load` command li module load Calib/0.3.4-GCC-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Calib/0.3.4-GCC-9.3.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Calib/0.3.4-GCC-9.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cantera.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cantera.md index f91e53332eb3..bb7a5888e1c0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cantera.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cantera.md @@ -6,6 +6,10 @@ hide: Cantera ======= + +Chemical kinetics, thermodynamics, and transport tool suite + +https://github.com/Cantera/cantera # Available modules @@ -14,11 +18,12 @@ The overview below shows which Cantera installations are available per HPC-UGent To start using Cantera, load one of these modules using a `module load` command like: ```shell -module load Cantera/2.6.0-intel-2021b +module load Cantera/3.0.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Cantera/2.6.0-intel-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Cantera/3.0.0-foss-2023a|x|x|x|x|x|x| +|Cantera/2.6.0-intel-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CapnProto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CapnProto.md index 2120e6e2342d..a74e520159e1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CapnProto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CapnProto.md @@ -6,6 +6,10 @@ hide: CapnProto ========= + +Cap’n Proto is an insanely fast data interchange format and capability-based RPC system. + +https://capnproto.org # Available modules @@ -14,12 +18,13 @@ The overview below shows which CapnProto installations are available per HPC-UGe To start using CapnProto, load one of these modules using a `module load` command like: ```shell -module load CapnProto/0.9.1-GCCcore-11.2.0 +module load CapnProto/1.0.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CapnProto/0.9.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|CapnProto/0.8.0-GCCcore-9.3.0|-|x|x|x|-|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CapnProto/1.0.1-GCCcore-12.3.0|x|x|x|x|x|x| +|CapnProto/0.9.1-GCCcore-11.2.0|x|x|x|-|x|x| +|CapnProto/0.8.0-GCCcore-9.3.0|-|x|x|x|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cartopy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cartopy.md index ebabf47d64b2..2293e08e777f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cartopy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cartopy.md @@ -6,6 +6,10 @@ hide: Cartopy ======= + +Cartopy is a Python package designed to make drawing maps for data analysis and visualisation easy. + +https://scitools.org.uk/cartopy/docs/latest/ # Available modules @@ -14,15 +18,53 @@ The overview below shows which Cartopy installations are available per HPC-UGent To start using Cartopy, load one of these modules using a `module load` command like: ```shell -module load Cartopy/0.20.3-foss-2022a +module load Cartopy/0.22.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Cartopy/0.22.0-foss-2023a|x|x|x|x|x|x| +|Cartopy/0.20.3-foss-2022a|x|x|x|x|x|x| +|Cartopy/0.20.3-foss-2021b|x|x|x|x|x|x| +|Cartopy/0.19.0.post1-intel-2020b|-|x|x|-|x|x| +|Cartopy/0.19.0.post1-foss-2020b|-|x|x|x|x|x| +|Cartopy/0.18.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### Cartopy/0.22.0-foss-2023a + +This is a list of extensions included in the module: + +Cartopy-0.22.0, OWSLib-0.29.3, pyepsg-0.4.0, pykdtree-1.3.10, pyshp-2.3.1 + +### Cartopy/0.20.3-foss-2022a + +This is a list of extensions included in the module: + +Cartopy-0.20.3, OWSLib-0.27.2, pyepsg-0.4.0, pykdtree-1.3.5, pyshp-2.3.1 + +### Cartopy/0.20.3-foss-2021b + +This is a list of extensions included in the module: + +Cartopy-0.20.3, OWSLib-0.26.0, pyepsg-0.4.0, pykdtree-1.3.5, pyproj-3.2.1, pyshp-2.3.1 + +### Cartopy/0.19.0.post1-intel-2020b + +This is a list of extensions included in the module: + +Cartopy-0.19.0.post1, OWSLib-0.24.1, pyepsg-0.4.0, pykdtree-1.3.4, pyshp-2.1.3 + +### Cartopy/0.19.0.post1-foss-2020b + +This is a list of extensions included in the module: + +Cartopy-0.19.0.post1, OWSLib-0.24.1, pyepsg-0.4.0, pykdtree-1.3.4, pyshp-2.1.3 + +### Cartopy/0.18.0-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Cartopy/0.20.3-foss-2022a|x|x|x|x|x|x|x|x| -|Cartopy/0.20.3-foss-2021b|x|x|x|x|x|x|x|x| -|Cartopy/0.19.0.post1-intel-2020b|-|x|x|-|x|x|x|x| -|Cartopy/0.19.0.post1-foss-2020b|-|x|x|x|x|x|x|x| -|Cartopy/0.18.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +Cartopy-0.18.0, OWSLib-0.20.0, pyepsg-0.4.0, pykdtree-1.3.1, pyshp-2.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Casanovo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Casanovo.md index 22f07e3952e4..f7279c95dcf9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Casanovo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Casanovo.md @@ -6,6 +6,10 @@ hide: Casanovo ======== + +De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model + +https://casanovo.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using Casanovo, load one of these modules using a `module load` command module load Casanovo/3.3.0-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Casanovo/3.3.0-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|Casanovo/3.3.0-foss-2022a|x|x|x|x|x|x| + + +### Casanovo/3.3.0-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +casanovo-3.3.0, Deprecated-1.2.13, depthcharge-ms-0.1.0, fastobo-0.12.2, lark-1.1.5, natsort-8.3.1, PyGithub-1.58.1, pyteomics-4.5.6, spectrum-utils-0.4.1 + +### Casanovo/3.3.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Casanovo/3.3.0-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|Casanovo/3.3.0-foss-2022a|x|x|x|x|x|x|x|x| +casanovo-3.3.0, Deprecated-1.2.13, depthcharge-ms-0.1.0, fastobo-0.12.2, lark-1.1.5, natsort-8.3.1, PyGithub-1.58.1, pyteomics-4.5.6, spectrum-utils-0.4.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CatBoost.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CatBoost.md new file mode 100644 index 000000000000..1b5d13d3d7ba --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CatBoost.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +CatBoost +======== + + +CatBoost is a high-performance open source library for gradient boosting on decision trees + +https://catboost.ai +# Available modules + + +The overview below shows which CatBoost installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using CatBoost, load one of these modules using a `module load` command like: + +```shell +module load CatBoost/1.2-gfbf-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CatBoost/1.2-gfbf-2023a|x|x|x|x|x|x| + + +### CatBoost/1.2-gfbf-2023a + +This is a list of extensions included in the module: + +CatBoost-1.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CatLearn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CatLearn.md index 6011caa367cc..61fa947db1b2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CatLearn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CatLearn.md @@ -6,6 +6,10 @@ hide: CatLearn ======== + +An environment for atomistic machine learning in Python for applications in catalysis + +https://catlearn.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using CatLearn, load one of these modules using a `module load` command module load CatLearn/0.6.2-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CatLearn/0.6.2-intel-2022a|x|x|x|x|x|x| + + +### CatLearn/0.6.2-intel-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CatLearn/0.6.2-intel-2022a|x|x|x|x|x|x|x|x| +CatLearn-0.6.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CatMAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CatMAP.md index f484fd170aa1..7209c62404b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CatMAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CatMAP.md @@ -6,6 +6,10 @@ hide: CatMAP ====== + +Catalyst Micro-kinetic Analysis Package for automated creation of micro-kinetic models used in catalyst screening. + +https://catmap.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using CatMAP, load one of these modules using a `module load` command l module load CatMAP/20220519-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CatMAP/20220519-foss-2022a|x|x|x|x|x|x| + + +### CatMAP/20220519-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CatMAP/20220519-foss-2022a|x|x|x|x|x|x|x|x| +CatMAP-20220519 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Catch2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Catch2.md new file mode 100644 index 000000000000..0fb6db63095c --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Catch2.md @@ -0,0 +1,30 @@ +--- +hide: + - toc +--- + +Catch2 +====== + + +A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later + +https://github.com/catchorg/Catch2 +# Available modules + + +The overview below shows which Catch2 installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Catch2, load one of these modules using a `module load` command like: + +```shell +module load Catch2/2.13.9-GCCcore-13.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Catch2/2.13.9-GCCcore-13.2.0|x|x|x|x|x|x| +|Catch2/2.13.9-GCCcore-12.3.0|x|x|x|x|x|x| +|Catch2/2.13.9-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cbc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cbc.md new file mode 100644 index 000000000000..93c87e277f51 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cbc.md @@ -0,0 +1,29 @@ +--- +hide: + - toc +--- + +Cbc +=== + + +Cbc (Coin-or branch and cut) is an open-source mixed integer linear programmingsolver written in C++. It can be used as a callable library or using astand-alone executable. + +https://github.com/coin-or/Cbc +# Available modules + + +The overview below shows which Cbc installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Cbc, load one of these modules using a `module load` command like: + +```shell +module load Cbc/2.10.11-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Cbc/2.10.11-foss-2023a|x|x|x|x|x|x| +|Cbc/2.10.5-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellBender.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellBender.md new file mode 100644 index 000000000000..691904a5546b --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellBender.md @@ -0,0 +1,42 @@ +--- +hide: + - toc +--- + +CellBender +========== + + +CellBender is a software package for eliminating technical artifacts fromhigh-throughput single-cell RNA sequencing (scRNA-seq) data. + +http://github.com/broadinstitute/CellBender +# Available modules + + +The overview below shows which CellBender installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using CellBender, load one of these modules using a `module load` command like: + +```shell +module load CellBender/0.3.1-foss-2022a-CUDA-11.7.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CellBender/0.3.1-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|CellBender/0.3.1-foss-2022a|x|x|x|x|x|x| + + +### CellBender/0.3.1-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +cellbender-0.3.1, comm-0.2.1, ipykernel-6.20.2, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-4.12.0, setuptools-69.0.3, traitlets-5.14.1 + +### CellBender/0.3.1-foss-2022a + +This is a list of extensions included in the module: + +cellbender-0.3.1, comm-0.2.1, ipykernel-6.20.2, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-4.12.0, setuptools-69.0.3, traitlets-5.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellOracle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellOracle.md index 62f15a37bc26..bd3040300450 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellOracle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellOracle.md @@ -6,6 +6,10 @@ hide: CellOracle ========== + +CellOracle is a Python library for in silico gene perturbation analyses using single-cell omics dataand Gene Regulatory Network models. + +https://github.com/morris-lab/CellOracle # Available modules @@ -17,8 +21,15 @@ To start using CellOracle, load one of these modules using a `module load` comma module load CellOracle/0.12.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CellOracle/0.12.0-foss-2022a|x|x|x|x|x|x| + + +### CellOracle/0.12.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CellOracle/0.12.0-foss-2022a|x|x|x|x|x|x|x|x| +celloracle-0.12.0, jupyter-1.0.0, jupyter-console-6.4.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellProfiler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellProfiler.md index 3812e63c0422..4e35b21174c0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellProfiler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellProfiler.md @@ -6,6 +6,10 @@ hide: CellProfiler ============ + +CellProfiler is a free open-source software designed to enable biologists without training incomputer vision or programming to quantitatively measure phenotypes from thousands of images automatically. + +http://cellprofiler.org/ # Available modules @@ -17,8 +21,15 @@ To start using CellProfiler, load one of these modules using a `module load` com module load CellProfiler/4.2.4-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CellProfiler/4.2.4-foss-2021a|x|x|x|-|x|x| + + +### CellProfiler/4.2.4-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CellProfiler/4.2.4-foss-2021a|x|x|x|-|x|x|x|x| +CellProfiler-4.2.4, cellprofiler-core-4.2.4, centrosome-1.2.1, deprecation-2.1.0, h5py-3.6.0, inflect-6.0.2, mahotas-1.4.13, prokaryote-2.4.4, pydantic-1.10.2, python-bioformats-4.0.6, python-javabridge-4.0.3, pyzmq-22.3.0, sentry-sdk-1.10.1, typing_extensions-4.4.0, urllib3-1.26.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger-ATAC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger-ATAC.md index 1b6eaaa7e98b..8007885e802f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger-ATAC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger-ATAC.md @@ -6,6 +6,10 @@ hide: CellRanger-ATAC =============== + +Cell Ranger ATAC is a set of analysis pipelines that process Chromium Single Cell ATAC data. + +https://support.10xgenomics.com/single-cell-atac/software/pipelines/latest/what-is-cell-ranger-atac # Available modules @@ -17,9 +21,9 @@ To start using CellRanger-ATAC, load one of these modules using a `module load` module load CellRanger-ATAC/2.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CellRanger-ATAC/2.1.0|x|x|x|x|x|x|x|x| -|CellRanger-ATAC/2.0.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CellRanger-ATAC/2.1.0|x|x|x|x|x|x| +|CellRanger-ATAC/2.0.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger.md index 75a9cee8328e..9555350d4392 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRanger.md @@ -6,6 +6,10 @@ hide: CellRanger ========== + +Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate gene-cell matrices and perform clustering and gene expression analysis. + +https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger # Available modules @@ -17,12 +21,12 @@ To start using CellRanger, load one of these modules using a `module load` comma module load CellRanger/7.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CellRanger/7.0.0|-|x|x|x|x|x|x|x| -|CellRanger/6.1.2|-|x|x|-|x|x|x|x| -|CellRanger/6.0.1|-|x|x|-|x|-|x|-| -|CellRanger/4.0.0|-|-|x|-|x|-|-|-| -|CellRanger/3.1.0|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CellRanger/7.0.0|-|x|x|x|x|x| +|CellRanger/6.1.2|-|x|x|-|x|x| +|CellRanger/6.0.1|-|x|x|-|x|-| +|CellRanger/4.0.0|-|-|x|-|x|-| +|CellRanger/3.1.0|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRank.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRank.md index 9881f77674ae..f0e92bedb92b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellRank.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellRank.md @@ -6,6 +6,10 @@ hide: CellRank ======== + +CellRank is a toolkit to uncover cellular dynamics based on Markov state modeling of single-cell data. It contains two main modules:kernels compute cell-cell transition probabilities and estimators generatehypothesis based on these. + +https://cellrank.readthedocs.io/en/stable/ # Available modules @@ -14,11 +18,25 @@ The overview below shows which CellRank installations are available per HPC-UGen To start using CellRank, load one of these modules using a `module load` command like: ```shell -module load CellRank/1.4.0-foss-2021a +module load CellRank/2.0.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CellRank/2.0.2-foss-2022a|x|x|x|x|x|x| +|CellRank/1.4.0-foss-2021a|-|x|x|-|x|x| + + +### CellRank/2.0.2-foss-2022a + +This is a list of extensions included in the module: + +cellrank-2.0.2, docrep-0.3.2, progressbar2-4.3.2, pygam-0.9.0, pygpcca-1.0.4, python-utils-3.8.1 + +### CellRank/1.4.0-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CellRank/1.4.0-foss-2021a|-|x|x|-|x|x|x|x| +CellRank-1.4.0, docrep-0.3.2, joblib-1.0.1, progressbar2-3.53.1, pygam-0.8.0, pygpcca-1.0.2, python-utils-2.5.6, wrapt-1.12.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CellTypist.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CellTypist.md index 6065d8fa3543..92792f68eb4c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CellTypist.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CellTypist.md @@ -6,6 +6,10 @@ hide: CellTypist ========== + +A tool for semi-automatic cell type annotation + +https://www.celltypist.org/ # Available modules @@ -14,11 +18,19 @@ The overview below shows which CellTypist installations are available per HPC-UG To start using CellTypist, load one of these modules using a `module load` command like: ```shell -module load CellTypist/1.0.0-foss-2021b +module load CellTypist/1.6.2-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CellTypist/1.6.2-foss-2023a|x|x|x|x|x|x| +|CellTypist/1.0.0-foss-2021b|x|x|x|-|x|x| + + +### CellTypist/1.6.2-foss-2023a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CellTypist/1.0.0-foss-2021b|x|x|x|-|x|x|x|x| +celltypist-1.6.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cellpose.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cellpose.md index cc0982e97790..d65c05746e55 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cellpose.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cellpose.md @@ -6,6 +6,10 @@ hide: Cellpose ======== + +a generalist algorithm for cellular segmentation + +https://www.cellpose.org # Available modules @@ -17,9 +21,22 @@ To start using Cellpose, load one of these modules using a `module load` command module load Cellpose/2.2.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Cellpose/2.2.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|Cellpose/2.2.2-foss-2022a|x|-|x|x|x|x| + + +### Cellpose/2.2.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +Cellpose-2.2.2, fastremap-1.13.5, natsort-8.3.1, roifile-2023.5.12, tifffile-2023.4.12 + +### Cellpose/2.2.2-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Cellpose/2.2.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|Cellpose/2.2.2-foss-2022a|x|-|x|x|x|x|x|x| +Cellpose-2.2.2, fastremap-1.13.5, natsort-8.3.1, roifile-2023.5.12, tifffile-2023.4.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Centrifuge.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Centrifuge.md index ee03c25536c5..111261270c72 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Centrifuge.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Centrifuge.md @@ -6,6 +6,10 @@ hide: Centrifuge ========== + +Classifier for metagenomic sequences + +https://ccb.jhu.edu/software/centrifuge # Available modules @@ -17,8 +21,8 @@ To start using Centrifuge, load one of these modules using a `module load` comma module load Centrifuge/1.0.4-beta-gompi-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Centrifuge/1.0.4-beta-gompi-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Centrifuge/1.0.4-beta-gompi-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cereal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cereal.md index f496fdaa24fd..9102279f013d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cereal.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cereal.md @@ -6,6 +6,10 @@ hide: Cereal ====== + +cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to befast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone. + +https://uscilab.github.io/cereal/ # Available modules @@ -17,8 +21,8 @@ To start using Cereal, load one of these modules using a `module load` command l module load Cereal/1.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Cereal/1.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Cereal/1.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ceres-Solver.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ceres-Solver.md new file mode 100644 index 000000000000..c2a1a162d869 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ceres-Solver.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Ceres-Solver +============ + + +Ceres Solver is an open source C++ library for modeling and solving large, complicated optimizationproblems + +http://ceres-solver.org +# Available modules + + +The overview below shows which Ceres-Solver installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Ceres-Solver, load one of these modules using a `module load` command like: + +```shell +module load Ceres-Solver/2.2.0-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Ceres-Solver/2.2.0-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cgl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cgl.md new file mode 100644 index 000000000000..effd28c9d630 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cgl.md @@ -0,0 +1,29 @@ +--- +hide: + - toc +--- + +Cgl +=== + + +The COIN-OR Cut Generation Library (Cgl) is a collection of cut generators thatcan be used with other COIN-OR packages that make use of cuts, such as, amongothers, the linear solver Clp or the mixed integer linear programming solversCbc or BCP. Cgl uses the abstract class OsiSolverInterface (see Osi) to use orcommunicate with a solver. It does not directly call a solver. + +https://github.com/coin-or/Cgl +# Available modules + + +The overview below shows which Cgl installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Cgl, load one of these modules using a `module load` command like: + +```shell +module load Cgl/0.60.8-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Cgl/0.60.8-foss-2023a|x|x|x|x|x|x| +|Cgl/0.60.7-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CharLS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CharLS.md index 08d80305e289..e6263abb3ea5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CharLS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CharLS.md @@ -6,6 +6,10 @@ hide: CharLS ====== + +CharLS is a C++ implementation of the JPEG-LS standard for lossless and near-lossless imagecompression and decompression. JPEG-LS is a low-complexity image compression standard that matches JPEG 2000compression ratios. + +https://github.com/team-charls/charls # Available modules @@ -17,8 +21,8 @@ To start using CharLS, load one of these modules using a `module load` command l module load CharLS/2.4.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CharLS/2.4.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CharLS/2.4.1-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CheMPS2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CheMPS2.md index f7a8d95c7c43..e4ac3150d165 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CheMPS2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CheMPS2.md @@ -6,6 +6,10 @@ hide: CheMPS2 ======= + +CheMPS2 is a scientific library which contains a spin-adapted implementation of thedensity matrix renormalization group (DMRG) for ab initio quantum chemistry. + +https://github.com/SebWouters/CheMPS2 # Available modules @@ -14,11 +18,12 @@ The overview below shows which CheMPS2 installations are available per HPC-UGent To start using CheMPS2, load one of these modules using a `module load` command like: ```shell -module load CheMPS2/1.8.12-foss-2022a +module load CheMPS2/1.8.12-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CheMPS2/1.8.12-foss-2022a|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CheMPS2/1.8.12-foss-2022b|x|x|x|x|x|x| +|CheMPS2/1.8.12-foss-2022a|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Check.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Check.md index d7965478f987..3965a62d6ab0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Check.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Check.md @@ -6,6 +6,10 @@ hide: Check ===== + +Check is a unit testing framework for C. It features a simple interface fordefining unit tests, putting little in the way of the developer. Tests arerun in a separate address space, so both assertion failures and code errorsthat cause segmentation faults or other signals can be caught. Test resultsare reportable in the following: Subunit, TAP, XML, and a generic loggingformat. + +https://libcheck.github.io/check/ # Available modules @@ -17,8 +21,8 @@ To start using Check, load one of these modules using a `module load` command li module load Check/0.15.2-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Check/0.15.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Check/0.15.2-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CheckM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CheckM.md index 43794f3bff44..c0a4f3be9fd1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CheckM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CheckM.md @@ -6,6 +6,10 @@ hide: CheckM ====== + +CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. + +https://github.com/Ecogenomics/CheckM # Available modules @@ -17,12 +21,12 @@ To start using CheckM, load one of these modules using a `module load` command l module load CheckM/1.1.3-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CheckM/1.1.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|CheckM/1.1.3-foss-2021b|x|x|x|-|x|x|x|x| -|CheckM/1.1.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|CheckM/1.1.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|CheckM/1.0.18-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CheckM/1.1.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|CheckM/1.1.3-foss-2021b|x|x|x|-|x|x| +|CheckM/1.1.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|CheckM/1.1.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|CheckM/1.0.18-foss-2020b-Python-2.7.18|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Chimera.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Chimera.md index 96eba47afe24..7c69dde31f49 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Chimera.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Chimera.md @@ -6,6 +6,10 @@ hide: Chimera ======= + +UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. + +https://www.cgl.ucsf.edu/chimera/ # Available modules @@ -17,8 +21,8 @@ To start using Chimera, load one of these modules using a `module load` command module load Chimera/1.16-linux_x86_64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Chimera/1.16-linux_x86_64|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Chimera/1.16-linux_x86_64|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Circlator.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Circlator.md new file mode 100644 index 000000000000..bb4f24ad5b05 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Circlator.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +Circlator +========= + + +A tool to circularize genome assemblies.s + +https://github.com/sanger-pathogens/circlator/ +# Available modules + + +The overview below shows which Circlator installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Circlator, load one of these modules using a `module load` command like: + +```shell +module load Circlator/1.5.5-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Circlator/1.5.5-foss-2023a|x|x|x|x|x|x| + + +### Circlator/1.5.5-foss-2023a + +This is a list of extensions included in the module: + +Circlator-1.5.5, pymummer-0.11.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Circuitscape.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Circuitscape.md index 4e3e4cf78802..0753a0b69e51 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Circuitscape.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Circuitscape.md @@ -6,6 +6,10 @@ hide: Circuitscape ============ + +Algorithms from circuit theory to predict connectivity in heterogeneous landscapes + +https://github.com/Circuitscape/Circuitscape.jl # Available modules @@ -17,8 +21,15 @@ To start using Circuitscape, load one of these modules using a `module load` com module load Circuitscape/5.12.3-Julia-1.7.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Circuitscape/5.12.3-Julia-1.7.2|x|x|x|x|x|x| + + +### Circuitscape/5.12.3-Julia-1.7.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Circuitscape/5.12.3-Julia-1.7.2|x|x|x|x|x|x|x|x| +AbstractFFTs-1.2.1, Adapt-3.4.0, AlgebraicMultigrid-0.5.1, ArchGDAL-0.8.5, ArnoldiMethod-0.2.0, Arrow_jll-10.0.0+1, boost_jll-1.76.0+1, Bzip2_jll-1.0.8+0, CEnum-0.4.2, ChainRulesCore-1.15.6, ChangesOfVariables-0.1.4, Circuitscape-5.12.3, Colors-0.12.10, ColorSchemes-3.20.0, ColorTypes-0.11.4, ColorVectorSpace-0.9.9, CommonSolve-0.2.3, Compat-4.5.0, DataAPI-1.14.0, DataStructures-0.18.13, DataValueInterfaces-1.0.0, DiskArrays-0.3.8, DocStringExtensions-0.9.3, Expat_jll-2.4.8+0, FixedPointNumbers-0.8.4, GDAL-1.5.0, GDAL_jll-301.600.100+0, GeoFormatTypes-0.4.1, GeoInterface-0.5.7, GEOS_jll-3.11.0+0, Graphics-1.1.2, Graphs-1.7.4, GZip-0.5.1, HDF5_jll-1.12.2+2, ImageCore-0.9.4, Inflate-0.1.3, IntelOpenMP_jll-2018.0.3+2, InverseFunctions-0.1.8, IrrationalConstants-0.1.1, IterativeSolvers-0.9.2, IteratorInterfaceExtensions-1.0.0, JLLWrappers-1.4.1, JpegTurbo_jll-2.1.2+0, Kerberos_krb5_jll-1.19.3+0, LERC_jll-3.0.0+1, libgeotiff_jll-100.700.100+0, Libiconv_jll-1.16.1+2, libpng_jll-1.6.37+5, LibPQ_jll-14.3.0+1, Libtiff_jll-4.4.0+0, LittleCMS_jll-2.12.0+0, LogExpFunctions-0.3.19, Lz4_jll-1.9.3+0, LZO_jll-2.10.1+0, MacroTools-0.5.10, MappedArrays-0.4.1, MKL_jll-2022.2.0+0, MosaicViews-0.3.4, NaNMath-1.0.1, NetCDF_jll-400.902.5+1, OffsetArrays-1.12.8, OpenJpeg_jll-2.4.0+0, OpenSpecFun_jll-0.5.5+0, OpenSSL_jll-1.1.19+0, OrderedCollections-1.4.1, PaddedViews-0.5.11, Pardiso-0.5.4, PlotUtils-1.3.4, Preferences-1.3.0, PROJ_jll-900.100.0+0, RecipesBase-1.3.0, Reexport-1.2.2, SimpleTraits-0.9.4, SimpleWeightedGraphs-1.2.1, snappy_jll-1.1.9+1, SnoopPrecompile-2.9.5, SpecialFunctions-2.1.7, SQLite_jll-3.40.0+1, StackViews-0.1.1, StaticArrays-1.5.11, StaticArraysCore-1.4.0, Tables-1.10.0, TableTraits-1.0.1, TensorCore-0.1.1, Thrift_jll-0.16.0+0, XML2_jll-2.9.14+0, Zstd_jll-1.5.2+0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clair3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clair3.md new file mode 100644 index 000000000000..d861b0fbe893 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Clair3.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Clair3 +====== + + +Clair3 is a germline small variant caller for long-reads.Clair3 makes the best of two major method categories: pileup calling handlesmost variant candidates with speed, and full-alignment tackles complicated candidatesto maximize precision and recall. Clair3 runs fast and has superior performance,especially at lower coverage. Clair3 is simple and modular for easy deployment andintegration. + +https://github.com/HKU-BAL/Clair3 +# Available modules + + +The overview below shows which Clair3 installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Clair3, load one of these modules using a `module load` command like: + +```shell +module load Clair3/1.0.4-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Clair3/1.0.4-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md index 951a174f4680..8a2ad1be017a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Clang.md @@ -6,6 +6,10 @@ hide: Clang ===== + +C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC. + +https://clang.llvm.org/ # Available modules @@ -17,17 +21,18 @@ To start using Clang, load one of these modules using a `module load` command li module load Clang/16.0.6-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Clang/16.0.6-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Clang/15.0.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Clang/13.0.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Clang/12.0.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Clang/12.0.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Clang/11.0.1-gcccuda-2020b|-|-|-|-|x|-|-|-| -|Clang/11.0.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|Clang/10.0.0-GCCcore-9.3.0|-|x|x|-|x|x|-|x| -|Clang/9.0.1-GCCcore-8.3.0|-|x|x|-|x|x|x|x| -|Clang/9.0.1-GCC-8.3.0-CUDA-10.1.243|x|-|-|-|x|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Clang/16.0.6-GCCcore-12.3.0|x|x|x|x|x|x| +|Clang/15.0.5-GCCcore-11.3.0|x|x|x|x|x|x| +|Clang/13.0.1-GCCcore-11.3.0-CUDA-11.7.0|x|-|x|-|x|-| +|Clang/13.0.1-GCCcore-11.3.0|x|x|x|x|x|x| +|Clang/12.0.1-GCCcore-11.2.0|x|x|x|x|x|x| +|Clang/12.0.1-GCCcore-10.3.0|x|x|x|x|x|x| +|Clang/11.0.1-gcccuda-2020b|-|-|-|-|x|-| +|Clang/11.0.1-GCCcore-10.2.0|-|x|x|x|x|x| +|Clang/10.0.0-GCCcore-9.3.0|-|x|x|-|x|x| +|Clang/9.0.1-GCCcore-8.3.0|-|x|x|-|x|x| +|Clang/9.0.1-GCC-8.3.0-CUDA-10.1.243|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clp.md index ca5ba3a6ad72..1bce8978b9c3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Clp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Clp.md @@ -6,6 +6,10 @@ hide: Clp === + +Clp (Coin-or linear programming) is an open-source linear programming solver.It is primarily meant to be used as a callable library, but a basic,stand-alone executable version is also available. + +https://github.com/coin-or/Clp # Available modules @@ -14,11 +18,13 @@ The overview below shows which Clp installations are available per HPC-UGent Tie To start using Clp, load one of these modules using a `module load` command like: ```shell -module load Clp/1.17.7-foss-2021b +module load Clp/1.17.9-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Clp/1.17.7-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Clp/1.17.9-foss-2023a|x|x|x|x|x|x| +|Clp/1.17.8-foss-2022b|x|x|x|x|x|x| +|Clp/1.17.7-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Clustal-Omega.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Clustal-Omega.md index 3199c455f627..b6ef67d15279 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Clustal-Omega.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Clustal-Omega.md @@ -6,6 +6,10 @@ hide: Clustal-Omega ============= + +Clustal Omega is a multiple sequence alignment program for proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms + +http://www.clustal.org/omega/ # Available modules @@ -17,9 +21,9 @@ To start using Clustal-Omega, load one of these modules using a `module load` co module load Clustal-Omega/1.2.4-intel-compilers-2021.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Clustal-Omega/1.2.4-intel-compilers-2021.2.0|-|x|x|-|x|x|x|x| -|Clustal-Omega/1.2.4-GCC-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Clustal-Omega/1.2.4-intel-compilers-2021.2.0|-|x|x|-|x|x| +|Clustal-Omega/1.2.4-GCC-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ClustalW2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ClustalW2.md index bf9b66dbdb47..133509f6373a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ClustalW2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ClustalW2.md @@ -6,6 +6,10 @@ hide: ClustalW2 ========= + +ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. + +https://www.ebi.ac.uk/Tools/msa/clustalw2/ # Available modules @@ -17,8 +21,8 @@ To start using ClustalW2, load one of these modules using a `module load` comman module load ClustalW2/2.1-intel-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ClustalW2/2.1-intel-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ClustalW2/2.1-intel-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CmdStanR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CmdStanR.md index cfbc29c2cc82..af0d4b1f135f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CmdStanR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CmdStanR.md @@ -6,6 +6,10 @@ hide: CmdStanR ======== + +CmdStanR is a lightweight interface to Stan for R users + +https://mc-stan.org/cmdstanr # Available modules @@ -14,12 +18,13 @@ The overview below shows which CmdStanR installations are available per HPC-UGen To start using CmdStanR, load one of these modules using a `module load` command like: ```shell -module load CmdStanR/0.5.2-foss-2022a-R-4.2.1 +module load CmdStanR/0.7.1-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CmdStanR/0.5.2-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| -|CmdStanR/0.5.0-foss-2021b-R-4.1.2|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CmdStanR/0.7.1-foss-2023a-R-4.3.2|x|x|x|x|x|x| +|CmdStanR/0.5.2-foss-2022a-R-4.2.1|x|x|x|x|x|x| +|CmdStanR/0.5.0-foss-2021b-R-4.1.2|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CodAn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CodAn.md index b2892a0a412d..7c63a1b1ddd3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CodAn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CodAn.md @@ -6,6 +6,10 @@ hide: CodAn ===== + +CodAn (Coding sequence Annotator) is a computational tool designed to characterize the CDS and UTRregions on transcripts from any Eukaryote species. + +https://github.com/pedronachtigall/CodAn # Available modules @@ -17,8 +21,8 @@ To start using CodAn, load one of these modules using a `module load` command li module load CodAn/1.2-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CodAn/1.2-foss-2021b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CodAn/1.2-foss-2021b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CoinUtils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CoinUtils.md index 2bbc57e2a5ab..10ef2ec660eb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CoinUtils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CoinUtils.md @@ -6,6 +6,10 @@ hide: CoinUtils ========= + +CoinUtils (Coin-OR Utilities) is an open-source collection of classes andfunctions that are generally useful to more than one COIN-OR project. + +https://github.com/coin-or/CoinUtils # Available modules @@ -14,11 +18,13 @@ The overview below shows which CoinUtils installations are available per HPC-UGe To start using CoinUtils, load one of these modules using a `module load` command like: ```shell -module load CoinUtils/2.11.6-GCC-11.2.0 +module load CoinUtils/2.11.10-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CoinUtils/2.11.6-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CoinUtils/2.11.10-GCC-12.3.0|x|x|x|x|x|x| +|CoinUtils/2.11.9-GCC-12.2.0|x|x|x|x|x|x| +|CoinUtils/2.11.6-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ColabFold.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ColabFold.md index 163347103f20..110d8294047d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ColabFold.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ColabFold.md @@ -6,6 +6,10 @@ hide: ColabFold ========= + +Making protein folding accessible to all. Predict proteins structures both ingoogle colab and on your machine. + +https://github.com/sokrypton/ColabFold # Available modules @@ -17,9 +21,22 @@ To start using ColabFold, load one of these modules using a `module load` comman module load ColabFold/1.5.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ColabFold/1.5.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|ColabFold/1.5.2-foss-2022a|-|-|x|-|x|-| + + +### ColabFold/1.5.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +colabfold-1.5.2 + +### ColabFold/1.5.2-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ColabFold/1.5.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|ColabFold/1.5.2-foss-2022a|-|-|x|-|x|-|-|-| +colabfold-1.5.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CompareM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CompareM.md index 68dd18496c8f..949d2240f980 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CompareM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CompareM.md @@ -6,6 +6,10 @@ hide: CompareM ======== + +A toolbox for comparative genomics. + +https://github.com/dparks1134/CompareM # Available modules @@ -17,8 +21,15 @@ To start using CompareM, load one of these modules using a `module load` command module load CompareM/0.1.2-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CompareM/0.1.2-foss-2021b|x|x|x|-|x|x| + + +### CompareM/0.1.2-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CompareM/0.1.2-foss-2021b|x|x|x|-|x|x|x|x| +biolib-0.1.9, comparem-0.1.2, future-0.18.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Compress-Raw-Zlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Compress-Raw-Zlib.md index b09bb5c47d88..fcd8c427aa65 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Compress-Raw-Zlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Compress-Raw-Zlib.md @@ -6,6 +6,10 @@ hide: Compress-Raw-Zlib ================= + +Low-Level Interface to zlib or zlib-ng compression library + +https://metacpan.org/pod/Compress::Raw::Zlib # Available modules @@ -17,8 +21,8 @@ To start using Compress-Raw-Zlib, load one of these modules using a `module load module load Compress-Raw-Zlib/2.202-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Compress-Raw-Zlib/2.202-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Compress-Raw-Zlib/2.202-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Concorde.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Concorde.md new file mode 100644 index 000000000000..324ba4715279 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Concorde.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Concorde +======== + + +Concorde is a computer code for the symmetric traveling salesman problem (TSP) and some related network optimization problems + +https://www.math.uwaterloo.ca/tsp/concorde.html +# Available modules + + +The overview below shows which Concorde installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Concorde, load one of these modules using a `module load` command like: + +```shell +module load Concorde/20031219-GCC-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Concorde/20031219-GCC-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CoordgenLibs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CoordgenLibs.md index 88da07ad6cbf..307b6b673ebe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CoordgenLibs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CoordgenLibs.md @@ -6,6 +6,10 @@ hide: CoordgenLibs ============ + +Schrodinger-developed 2D Coordinate Generation + +https://github.com/schrodinger/coordgenlibs # Available modules @@ -17,8 +21,8 @@ To start using CoordgenLibs, load one of these modules using a `module load` com module load CoordgenLibs/3.0.1-iimpi-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CoordgenLibs/3.0.1-iimpi-2020a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CoordgenLibs/3.0.1-iimpi-2020a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CopyKAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CopyKAT.md index 4a340e6bfe79..c5a393b830e8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CopyKAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CopyKAT.md @@ -6,6 +6,10 @@ hide: CopyKAT ======= + +CopyKAT: Inference of genomic copy number and subclonal structure of human tumors from high-throughput single cell RNAseq data + +https://github.com/navinlabcode/copykat # Available modules @@ -14,11 +18,12 @@ The overview below shows which CopyKAT installations are available per HPC-UGent To start using CopyKAT, load one of these modules using a `module load` command like: ```shell -module load CopyKAT/1.1.0-foss-2022a-R-4.2.1 +module load CopyKAT/1.1.0-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CopyKAT/1.1.0-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CopyKAT/1.1.0-foss-2022b-R-4.2.2|x|x|x|x|x|x| +|CopyKAT/1.1.0-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Coreutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Coreutils.md index dbae74eb8386..e03577440ec9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Coreutils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Coreutils.md @@ -6,6 +6,10 @@ hide: Coreutils ========= + +The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system. + +https://www.gnu.org/software/coreutils/ # Available modules @@ -17,8 +21,8 @@ To start using Coreutils, load one of these modules using a `module load` comman module load Coreutils/8.32-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Coreutils/8.32-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Coreutils/8.32-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CppUnit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CppUnit.md index 8aff6eb7530f..1e8d393129ab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CppUnit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CppUnit.md @@ -6,6 +6,10 @@ hide: CppUnit ======= + +CppUnit is the C++ port of the famous JUnit framework for unit testing. + +https://freedesktop.org/wiki/Software/cppunit/ # Available modules @@ -17,8 +21,8 @@ To start using CppUnit, load one of these modules using a `module load` command module load CppUnit/1.15.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CppUnit/1.15.1-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CppUnit/1.15.1-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/CuPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/CuPy.md index 7150bf3192a6..6865bf5bb689 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/CuPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/CuPy.md @@ -6,6 +6,10 @@ hide: CuPy ==== + +CuPy is an open-source array library accelerated with NVIDIA CUDA. + +https://cupy.dev # Available modules @@ -17,8 +21,15 @@ To start using CuPy, load one of these modules using a `module load` command lik module load CuPy/8.5.0-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|CuPy/8.5.0-fosscuda-2020b|-|-|-|-|x|-| + + +### CuPy/8.5.0-fosscuda-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|CuPy/8.5.0-fosscuda-2020b|-|-|-|-|x|-|-|-| +cupy-8.5.0, fastrlock-0.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cufflinks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cufflinks.md index 6d266ede28dc..6e09b2e1daa7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cufflinks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cufflinks.md @@ -6,6 +6,10 @@ hide: Cufflinks ========= + +Transcript assembly, differential expression, and differential regulation for RNA-Seq + +http://cole-trapnell-lab.github.io/cufflinks/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which Cufflinks installations are available per HPC-UGe To start using Cufflinks, load one of these modules using a `module load` command like: ```shell -module load Cufflinks/20190706-GCC-10.2.0 +module load Cufflinks/20190706-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Cufflinks/20190706-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Cufflinks/20190706-GCC-11.2.0|x|x|x|x|x|x| +|Cufflinks/20190706-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Cython.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Cython.md index 2a61a64d2b59..dc4065993262 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Cython.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Cython.md @@ -6,6 +6,10 @@ hide: Cython ====== + +Cython is an optimising static compiler for both the Python programminglanguage and the extended Cython programming language (based on Pyrex). + +https://cython.org/ # Available modules @@ -14,12 +18,14 @@ The overview below shows which Cython installations are available per HPC-UGent To start using Cython, load one of these modules using a `module load` command like: ```shell -module load Cython/0.29.33-GCCcore-11.3.0 +module load Cython/3.0.8-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Cython/0.29.33-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Cython/0.29.22-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Cython/3.0.8-GCCcore-12.2.0|x|x|x|x|x|x| +|Cython/3.0.7-GCCcore-12.3.0|x|x|x|x|x|x| +|Cython/0.29.33-GCCcore-11.3.0|x|x|x|x|x|x| +|Cython/0.29.22-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DALI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DALI.md index 4e5c09fc7c54..bc7341f74a79 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DALI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DALI.md @@ -6,6 +6,10 @@ hide: DALI ==== + +R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem + +https://github.com/vibscc/DALI # Available modules @@ -17,8 +21,8 @@ To start using DALI, load one of these modules using a `module load` command lik module load DALI/2.1.2-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DALI/2.1.2-foss-2022b-R-4.2.2|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DALI/2.1.2-foss-2022b-R-4.2.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DAS_Tool.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DAS_Tool.md index 0e6dd1a43bb7..b5d3183371f4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DAS_Tool.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DAS_Tool.md @@ -6,6 +6,10 @@ hide: DAS_Tool ======== + +DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly. + +https://github.com/cmks/DAS_Tool # Available modules @@ -17,8 +21,15 @@ To start using DAS_Tool, load one of these modules using a `module load` command module load DAS_Tool/1.1.1-foss-2021b-R-4.1.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DAS_Tool/1.1.1-foss-2021b-R-4.1.2|x|x|x|x|x|x| + + +### DAS_Tool/1.1.1-foss-2021b-R-4.1.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DAS_Tool/1.1.1-foss-2021b-R-4.1.2|x|x|x|-|x|x|x|x| +DAS_Tool-1.1.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DB.md index 5fac25ea7e80..85473d0b9f81 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DB.md @@ -6,6 +6,10 @@ hide: DB == + +Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects. + +https://www.oracle.com/technetwork/products/berkeleydb # Available modules @@ -17,15 +21,15 @@ To start using DB, load one of these modules using a `module load` command like: module load DB/18.1.40-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DB/18.1.40-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|DB/18.1.40-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|DB/18.1.40-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|DB/18.1.40-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|DB/18.1.40-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|DB/18.1.32-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|DB/18.1.32-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|DB/18.1.32-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DB/18.1.40-GCCcore-12.2.0|x|x|x|x|x|x| +|DB/18.1.40-GCCcore-11.3.0|x|x|x|x|x|x| +|DB/18.1.40-GCCcore-11.2.0|x|x|x|x|x|x| +|DB/18.1.40-GCCcore-10.3.0|x|x|x|x|x|x| +|DB/18.1.40-GCCcore-10.2.0|x|x|x|x|x|x| +|DB/18.1.32-GCCcore-9.3.0|x|x|x|x|x|x| +|DB/18.1.32-GCCcore-8.3.0|x|x|x|x|x|x| +|DB/18.1.32-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DBD-mysql.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DBD-mysql.md index 18caf4b618b1..9cfd0787db1a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DBD-mysql.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DBD-mysql.md @@ -6,6 +6,10 @@ hide: DBD-mysql ========= + +Perl binding for MySQL + +https://metacpan.org/pod/distribution/DBD-mysql/lib/DBD/mysql.pm # Available modules @@ -17,9 +21,9 @@ To start using DBD-mysql, load one of these modules using a `module load` comman module load DBD-mysql/4.050-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DBD-mysql/4.050-GCC-11.3.0|x|x|x|x|x|x|x|x| -|DBD-mysql/4.050-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DBD-mysql/4.050-GCC-11.3.0|x|x|x|x|x|x| +|DBD-mysql/4.050-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DBG2OLC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DBG2OLC.md index f5f2c2f834cf..39659b14ff30 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DBG2OLC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DBG2OLC.md @@ -6,6 +6,10 @@ hide: DBG2OLC ======= + +DBG2OLC:Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies + +https://github.com/yechengxi/DBG2OLC # Available modules @@ -17,8 +21,8 @@ To start using DBG2OLC, load one of these modules using a `module load` command module load DBG2OLC/20200724-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DBG2OLC/20200724-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DBG2OLC/20200724-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DB_File.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DB_File.md index fdbdbd85bc95..b81bf595ec40 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DB_File.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DB_File.md @@ -6,6 +6,10 @@ hide: DB_File ======= + +Perl5 access to Berkeley DB version 1.x. + +https://perldoc.perl.org/DB_File.html # Available modules @@ -17,11 +21,11 @@ To start using DB_File, load one of these modules using a `module load` command module load DB_File/1.858-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DB_File/1.858-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|DB_File/1.857-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|DB_File/1.855-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|DB_File/1.835-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DB_File/1.858-GCCcore-11.3.0|x|x|x|x|x|x| +|DB_File/1.857-GCCcore-11.2.0|x|x|x|x|x|x| +|DB_File/1.855-GCCcore-10.2.0|-|x|x|x|x|x| +|DB_File/1.835-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DBus.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DBus.md index 01d2340a0752..60fff4362d91 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DBus.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DBus.md @@ -6,6 +6,10 @@ hide: DBus ==== + +D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed. + +https://dbus.freedesktop.org/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which DBus installations are available per HPC-UGent Ti To start using DBus, load one of these modules using a `module load` command like: ```shell -module load DBus/1.15.2-GCCcore-12.2.0 +module load DBus/1.15.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DBus/1.15.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|DBus/1.14.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|DBus/1.13.18-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|DBus/1.13.18-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|DBus/1.13.18-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|DBus/1.13.12-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|DBus/1.13.12-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DBus/1.15.4-GCCcore-12.3.0|x|x|x|x|x|x| +|DBus/1.15.2-GCCcore-12.2.0|x|x|x|x|x|x| +|DBus/1.14.0-GCCcore-11.3.0|x|x|x|x|x|x| +|DBus/1.13.18-GCCcore-11.2.0|x|x|x|x|x|x| +|DBus/1.13.18-GCCcore-10.3.0|x|x|x|x|x|x| +|DBus/1.13.18-GCCcore-10.2.0|x|x|x|x|x|x| +|DBus/1.13.12-GCCcore-9.3.0|-|x|x|-|x|x| +|DBus/1.13.12-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DETONATE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DETONATE.md new file mode 100644 index 000000000000..a951337f3256 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DETONATE.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +DETONATE +======== + + +DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL. Both packages are mainly intended to be used to evaluate de novo transcriptome assemblies, although REF-EVAL can be used to compare sets of any kinds of genomic sequences. + +http://deweylab.biostat.wisc.edu/detonate/ +# Available modules + + +The overview below shows which DETONATE installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using DETONATE, load one of these modules using a `module load` command like: + +```shell +module load DETONATE/1.11-GCC-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DETONATE/1.11-GCC-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DFT-D3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DFT-D3.md index ba32c1a06ff3..f8b93566ccdd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DFT-D3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DFT-D3.md @@ -6,6 +6,10 @@ hide: DFT-D3 ====== + +DFT-D3 implements a dispersion correction for density functionals, Hartree-Fock and semi-empirical quantum chemical methods. + +http://www.thch.uni-bonn.de/tc/index.php?section=downloads&subsection=DFT-D3&lang=english # Available modules @@ -17,9 +21,9 @@ To start using DFT-D3, load one of these modules using a `module load` command l module load DFT-D3/3.2.0-intel-compilers-2021.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DFT-D3/3.2.0-intel-compilers-2021.2.0|-|x|x|-|x|x|x|x| -|DFT-D3/3.2.0-iccifort-2020.4.304|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DFT-D3/3.2.0-intel-compilers-2021.2.0|-|x|x|-|x|x| +|DFT-D3/3.2.0-iccifort-2020.4.304|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DIA-NN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DIA-NN.md index b73fc79f07dc..aef51d52876c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DIA-NN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DIA-NN.md @@ -6,6 +6,10 @@ hide: DIA-NN ====== + +DIA-NN - a universal software for data-independent acquisition (DIA) proteomics data processing + +https://github.com/vdemichev/DiaNN # Available modules @@ -17,8 +21,8 @@ To start using DIA-NN, load one of these modules using a `module load` command l module load DIA-NN/1.8.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DIA-NN/1.8.1|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DIA-NN/1.8.1|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DIALOGUE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DIALOGUE.md index 2e930573500d..ffcc72933af3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DIALOGUE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DIALOGUE.md @@ -6,6 +6,10 @@ hide: DIALOGUE ======== + +DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment. + +https://github.com/livnatje/DIALOGUE # Available modules @@ -17,8 +21,8 @@ To start using DIALOGUE, load one of these modules using a `module load` command module load DIALOGUE/1.0-20230228-foss-2021b-R-4.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DIALOGUE/1.0-20230228-foss-2021b-R-4.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DIALOGUE/1.0-20230228-foss-2021b-R-4.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DIAMOND.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DIAMOND.md index 3c8c7c9faedf..3cd30411779e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DIAMOND.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DIAMOND.md @@ -6,6 +6,10 @@ hide: DIAMOND ======= + +Accelerated BLAST compatible local sequence aligner + +https://github.com/bbuchfink/diamond # Available modules @@ -14,18 +18,19 @@ The overview below shows which DIAMOND installations are available per HPC-UGent To start using DIAMOND, load one of these modules using a `module load` command like: ```shell -module load DIAMOND/2.1.8-GCC-12.2.0 +module load DIAMOND/2.1.8-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DIAMOND/2.1.8-GCC-12.2.0|x|x|x|x|x|x|x|x| -|DIAMOND/2.1.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|DIAMOND/2.0.13-GCC-11.2.0|x|x|x|x|x|x|x|x| -|DIAMOND/2.0.11-GCC-10.3.0|-|x|x|-|x|x|x|x| -|DIAMOND/2.0.7-GCC-10.2.0|x|x|x|x|x|x|x|x| -|DIAMOND/2.0.6-GCC-10.2.0|-|x|-|-|-|-|-|-| -|DIAMOND/0.9.30-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|DIAMOND/0.9.30-GCC-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DIAMOND/2.1.8-GCC-12.3.0|x|x|x|x|x|x| +|DIAMOND/2.1.8-GCC-12.2.0|x|x|x|x|x|x| +|DIAMOND/2.1.0-GCC-11.3.0|x|x|x|x|x|x| +|DIAMOND/2.0.13-GCC-11.2.0|x|x|x|x|x|x| +|DIAMOND/2.0.11-GCC-10.3.0|-|x|x|-|x|x| +|DIAMOND/2.0.7-GCC-10.2.0|x|x|x|x|x|x| +|DIAMOND/2.0.6-GCC-10.2.0|-|x|-|-|-|-| +|DIAMOND/0.9.30-iccifort-2019.5.281|-|x|x|-|x|x| +|DIAMOND/0.9.30-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DIANA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DIANA.md index 31c39a4dfc2f..8dc508a6183d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DIANA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DIANA.md @@ -6,6 +6,10 @@ hide: DIANA ===== + +DIANA (DIsplacement ANAlyzer) is an extensive multi-purpose finite element software package that is dedicated, but not exclusive, to a wide range of problems arising in Civil engineering including structural, geotechnical, tunnelling, earthquake disciplines and oil & gas engineering. + +https://dianafea.com/content/diana # Available modules @@ -17,9 +21,9 @@ To start using DIANA, load one of these modules using a `module load` command li module load DIANA/10.5 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DIANA/10.5|-|x|x|-|x|-|x|-| -|DIANA/10.4|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DIANA/10.5|-|x|x|-|x|-| +|DIANA/10.4|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DIRAC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DIRAC.md index d7851bfd68a0..99c329154bdf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DIRAC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DIRAC.md @@ -6,6 +6,10 @@ hide: DIRAC ===== + +DIRAC: Program for Atomic and Molecular Direct Iterative Relativistic All-electron Calculations + +http://www.diracprogram.org # Available modules @@ -17,9 +21,9 @@ To start using DIRAC, load one of these modules using a `module load` command li module load DIRAC/19.0-intel-2020a-Python-2.7.18-mpi-int64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DIRAC/19.0-intel-2020a-Python-2.7.18-mpi-int64|-|x|x|-|x|-|x|-| -|DIRAC/19.0-intel-2020a-Python-2.7.18-int64|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DIRAC/19.0-intel-2020a-Python-2.7.18-mpi-int64|-|x|x|-|x|-| +|DIRAC/19.0-intel-2020a-Python-2.7.18-int64|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DL_POLY_Classic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DL_POLY_Classic.md index e2c16c7f246c..0ac9ef6fcf51 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DL_POLY_Classic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DL_POLY_Classic.md @@ -6,6 +6,10 @@ hide: DL_POLY_Classic =============== + +DL_POLY Classic is a general purpose (parallel and serial)molecular dynamics simulation package. + +https://gitlab.com/DL_POLY_Classic/dl_poly # Available modules @@ -17,9 +21,9 @@ To start using DL_POLY_Classic, load one of these modules using a `module load` module load DL_POLY_Classic/1.10-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DL_POLY_Classic/1.10-intel-2019b|-|x|x|-|x|x|-|x| -|DL_POLY_Classic/1.10-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DL_POLY_Classic/1.10-intel-2019b|-|x|x|-|x|x| +|DL_POLY_Classic/1.10-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DMCfun.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DMCfun.md index 7ed6e51f2a13..c879b5c6279c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DMCfun.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DMCfun.md @@ -6,6 +6,10 @@ hide: DMCfun ====== + +Diffusion Model of Conflict (DMC) in Reaction Time Tasks + +https://cran.r-project.org/web/packages/DMCfun # Available modules @@ -17,8 +21,15 @@ To start using DMCfun, load one of these modules using a `module load` command l module load DMCfun/1.3.0-foss-2019b-R-3.6.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DMCfun/1.3.0-foss-2019b-R-3.6.2|-|x|x|-|x|x| + + +### DMCfun/1.3.0-foss-2019b-R-3.6.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DMCfun/1.3.0-foss-2019b-R-3.6.2|-|x|x|-|x|x|-|x| +DEoptim-2.2-5, DMCfun-1.3.0, dplyr-1.0.5, glue-1.4.2, lifecycle-1.0.0, optextras-2019-12.4, optimr-2019-12.16, Rcgmin-2013-2.21, rlang-0.4.10, Rvmmin-2018-4.17, setRNG-2013.9-1, tidyselect-1.1.0, vctrs-0.3.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DOLFIN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DOLFIN.md index de578138befd..06424d37d500 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DOLFIN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DOLFIN.md @@ -6,6 +6,10 @@ hide: DOLFIN ====== + +DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE (Problem Solving Environment) for ordinary and partial differential equations. + +https://bitbucket.org/fenics-project/dolfin # Available modules @@ -17,8 +21,8 @@ To start using DOLFIN, load one of these modules using a `module load` command l module load DOLFIN/2019.1.0.post0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DOLFIN/2019.1.0.post0-foss-2019b-Python-3.7.4|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DOLFIN/2019.1.0.post0-foss-2019b-Python-3.7.4|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DRAGMAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DRAGMAP.md index 0d04bae4f23a..e00488d31f4d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DRAGMAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DRAGMAP.md @@ -6,6 +6,10 @@ hide: DRAGMAP ======= + +Dragmap is the Dragen mapper/aligner Open Source Software. + +https://github.com/Illumina/DRAGMAP # Available modules @@ -17,8 +21,8 @@ To start using DRAGMAP, load one of these modules using a `module load` command module load DRAGMAP/1.3.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DRAGMAP/1.3.0-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DRAGMAP/1.3.0-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DROP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DROP.md index e35ac38af0a3..37efcfe6a151 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DROP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DROP.md @@ -6,6 +6,10 @@ hide: DROP ==== + +Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders + +https://gagneurlab-drop.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using DROP, load one of these modules using a `module load` command lik module load DROP/1.1.0-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DROP/1.1.0-foss-2020b-R-4.0.3|-|x|x|x|x|x| +|DROP/1.0.3-foss-2020b-R-4.0.3|-|x|x|x|x|x| + + +### DROP/1.1.0-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: + +about-5.2, click-log-0.3.2, DROP-1.1.0, graphviz-0.17, pandoc-1.1.0, plumbum-1.7.0, ply-3.11, wbuild-1.8.0 + +### DROP/1.0.3-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DROP/1.1.0-foss-2020b-R-4.0.3|-|x|x|x|x|x|x|x| -|DROP/1.0.3-foss-2020b-R-4.0.3|-|x|x|x|x|x|x|x| +about-5.2, click-log-0.3.2, DROP-1.0.3, graphviz-0.16, pandoc-1.0.2, ply-3.11, wbuild-1.8.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DUBStepR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DUBStepR.md index b66b28255095..8108f2e16d6a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DUBStepR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DUBStepR.md @@ -6,6 +6,10 @@ hide: DUBStepR ======== + +DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selectionalgorithm for cell type identification in single-cell RNA-sequencing data. + +https://github.com/prabhakarlab/DUBStepR # Available modules @@ -17,8 +21,8 @@ To start using DUBStepR, load one of these modules using a `module load` command module load DUBStepR/1.2.0-foss-2021b-R-4.1.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DUBStepR/1.2.0-foss-2021b-R-4.1.2|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DUBStepR/1.2.0-foss-2021b-R-4.1.2|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Dakota.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Dakota.md index e972fe21e998..72afb869673e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Dakota.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Dakota.md @@ -6,6 +6,10 @@ hide: Dakota ====== + +The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ. Broadly, the Dakota software's advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models. + +https://dakota.sandia.gov/ # Available modules @@ -17,8 +21,8 @@ To start using Dakota, load one of these modules using a `module load` command l module load Dakota/6.16.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Dakota/6.16.0-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Dakota/6.16.0-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Dalton.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Dalton.md index d2d88fad825c..2fac81cbb200 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Dalton.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Dalton.md @@ -6,6 +6,10 @@ hide: Dalton ====== + +The Dalton code is a powerful tool for a wide range of molecular properties at different levels of theory. Any published work arising from use of one of the Dalton2016 programs must acknowledge that by a proper reference, https://www.daltonprogram.org/www/citation.html. + +https://daltonprogram.org/ # Available modules @@ -17,8 +21,8 @@ To start using Dalton, load one of these modules using a `module load` command l module load Dalton/2020.0-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Dalton/2020.0-foss-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Dalton/2020.0-foss-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DeepLoc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DeepLoc.md new file mode 100644 index 000000000000..30fadaf8603d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DeepLoc.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +DeepLoc +======= + + +DeepLoc 2.0 predicts the subcellular localization(s) of eukaryotic proteins + +https://services.healthtech.dtu.dk/services/DeepLoc-2.0 +# Available modules + + +The overview below shows which DeepLoc installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using DeepLoc, load one of these modules using a `module load` command like: + +```shell +module load DeepLoc/2.0-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DeepLoc/2.0-foss-2022b|x|x|x|x|x|x| + + +### DeepLoc/2.0-foss-2022b + +This is a list of extensions included in the module: + +bio-1.6.2, DeepLoc-2.0, gprofiler-official-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Delly.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Delly.md index 60afab90231a..1eff0b8712a8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Delly.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Delly.md @@ -6,6 +6,10 @@ hide: Delly ===== + +Delly is an integrated structural variant (SV) predictionmethod that can discover, genotype and visualize deletions, tandem duplications,inversions and translocations at single-nucleotide resolution in short-readmassively parallel sequencing data. It uses paired-ends, split-reads andread-depth to sensitively and accurately delineate genomic rearrangementsthroughout the genome. + +https://github.com/dellytools/delly/ # Available modules @@ -17,8 +21,8 @@ To start using Delly, load one of these modules using a `module load` command li module load Delly/0.8.7-gompi-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Delly/0.8.7-gompi-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Delly/0.8.7-gompi-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md index 769ae74e681e..49c3f3481877 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DendroPy.md @@ -6,6 +6,10 @@ hide: DendroPy ======== + +A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters. + +https://pypi.python.org/pypi/DendroPy/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which DendroPy installations are available per HPC-UGen To start using DendroPy, load one of these modules using a `module load` command like: ```shell -module load DendroPy/4.5.2-GCCcore-11.3.0 +module load DendroPy/4.6.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DendroPy/4.5.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|DendroPy/4.5.2-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|DendroPy/4.5.2-GCCcore-10.2.0-Python-2.7.18|-|x|x|x|x|x|x|x| -|DendroPy/4.5.2-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|DendroPy/4.4.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|DendroPy/4.4.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DendroPy/4.6.1-GCCcore-12.3.0|x|x|x|x|x|x| +|DendroPy/4.5.2-GCCcore-11.3.0|x|x|x|x|x|x| +|DendroPy/4.5.2-GCCcore-11.2.0|x|x|x|-|x|x| +|DendroPy/4.5.2-GCCcore-10.2.0-Python-2.7.18|-|x|x|x|x|x| +|DendroPy/4.5.2-GCCcore-10.2.0|-|x|x|x|x|x| +|DendroPy/4.4.0-GCCcore-9.3.0|-|x|x|-|x|x| +|DendroPy/4.4.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DensPart.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DensPart.md index 34430b8c4bca..045ad5cf3e7a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DensPart.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DensPart.md @@ -6,6 +6,10 @@ hide: DensPart ======== + +Atoms-in-molecules density partitioning schemes based on stockholder recipe + +https://github.com/theochem/denspart # Available modules @@ -17,8 +21,8 @@ To start using DensPart, load one of these modules using a `module load` command module load DensPart/20220603-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DensPart/20220603-intel-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DensPart/20220603-intel-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Deprecated.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Deprecated.md index e5443255bcee..957fbba63733 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Deprecated.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Deprecated.md @@ -6,6 +6,10 @@ hide: Deprecated ========== + +If you need to mark a function or a method as deprecated, you can use the @deprecated decorator. + +https://github.com/tantale/deprecated # Available modules @@ -14,11 +18,25 @@ The overview below shows which Deprecated installations are available per HPC-UG To start using Deprecated, load one of these modules using a `module load` command like: ```shell -module load Deprecated/1.2.13-foss-2021a +module load Deprecated/1.2.13-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Deprecated/1.2.13-foss-2022a|x|x|x|x|x|x| +|Deprecated/1.2.13-foss-2021a|x|x|x|x|x|x| + + +### Deprecated/1.2.13-foss-2022a + +This is a list of extensions included in the module: + +Deprecated-1.2.13, wrapt-1.12.1 + +### Deprecated/1.2.13-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Deprecated/1.2.13-foss-2021a|x|x|x|x|x|x|x|x| +Deprecated-1.2.13, wrapt-1.15.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DiCE-ML.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DiCE-ML.md index 0063de9ba5eb..03c163292f09 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DiCE-ML.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DiCE-ML.md @@ -6,6 +6,10 @@ hide: DiCE-ML ======= + +Diverse Counterfactual Explanations (DiCE) for ML + +https://interpret.ml/DiCE # Available modules @@ -17,8 +21,8 @@ To start using DiCE-ML, load one of these modules using a `module load` command module load DiCE-ML/0.9-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DiCE-ML/0.9-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DiCE-ML/0.9-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Dice.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Dice.md index ea23ef6abd41..bd5b90223f49 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Dice.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Dice.md @@ -6,6 +6,10 @@ hide: Dice ==== + +Dice contains code for performing SHCI, VMC, GFMC, DMC, FCIQMC, stochastic MRCIand SC-NEVPT2, and AFQMC calculations with a focus on ab initio systems. + +https://github.com/sanshar/Dice # Available modules @@ -14,11 +18,12 @@ The overview below shows which Dice installations are available per HPC-UGent Ti To start using Dice, load one of these modules using a `module load` command like: ```shell -module load Dice/20221025-foss-2022a +module load Dice/20240101-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Dice/20221025-foss-2022a|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Dice/20240101-foss-2022b|x|x|x|x|x|x| +|Dice/20221025-foss-2022a|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DoubletFinder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DoubletFinder.md index e9d0c6d05332..46e130bb5b4c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DoubletFinder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DoubletFinder.md @@ -6,6 +6,10 @@ hide: DoubletFinder ============= + +R package for detecting doublets in single-cell RNA sequencing data + +https://github.com/chris-mcginnis-ucsf/DoubletFinder # Available modules @@ -17,9 +21,10 @@ To start using DoubletFinder, load one of these modules using a `module load` co module load DoubletFinder/2.0.3-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DoubletFinder/2.0.3-foss-2020a-R-4.0.0|-|-|x|-|x|-|-|-| -|DoubletFinder/2.0.3-20230131-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DoubletFinder/2.0.3-foss-2020a-R-4.0.0|-|-|x|-|x|-| +|DoubletFinder/2.0.3-20230819-foss-2022b-R-4.2.2|x|x|x|x|x|x| +|DoubletFinder/2.0.3-20230131-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Doxygen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Doxygen.md index 1909a01bad11..7c76c6717e78 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Doxygen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Doxygen.md @@ -6,6 +6,10 @@ hide: Doxygen ======= + +Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D. + +https://www.doxygen.org # Available modules @@ -17,15 +21,15 @@ To start using Doxygen, load one of these modules using a `module load` command module load Doxygen/1.9.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Doxygen/1.9.7-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Doxygen/1.9.5-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Doxygen/1.9.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Doxygen/1.9.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Doxygen/1.9.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Doxygen/1.8.20-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Doxygen/1.8.17-GCCcore-9.3.0|-|x|x|x|x|x|x|x| -|Doxygen/1.8.16-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Doxygen/1.9.7-GCCcore-12.3.0|x|x|x|x|x|x| +|Doxygen/1.9.5-GCCcore-12.2.0|x|x|x|x|x|x| +|Doxygen/1.9.4-GCCcore-11.3.0|x|x|x|x|x|x| +|Doxygen/1.9.1-GCCcore-11.2.0|x|x|x|x|x|x| +|Doxygen/1.9.1-GCCcore-10.3.0|x|x|x|x|x|x| +|Doxygen/1.8.20-GCCcore-10.2.0|x|x|x|x|x|x| +|Doxygen/1.8.17-GCCcore-9.3.0|x|x|x|x|x|x| +|Doxygen/1.8.16-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Dsuite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Dsuite.md index bebe52506cec..b839f89afa98 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Dsuite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Dsuite.md @@ -6,6 +6,10 @@ hide: Dsuite ====== + +Fast calculation of the ABBA-BABA statistics across many populations/species + +https://github.com/millanek/Dsuite # Available modules @@ -17,8 +21,8 @@ To start using Dsuite, load one of these modules using a `module load` command l module load Dsuite/20210718-intel-compilers-2021.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Dsuite/20210718-intel-compilers-2021.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Dsuite/20210718-intel-compilers-2021.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DualSPHysics.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DualSPHysics.md index 556284161095..c200aa1dbff6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DualSPHysics.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DualSPHysics.md @@ -6,6 +6,10 @@ hide: DualSPHysics ============ + +DualSPHysics is based on the Smoothed Particle Hydrodynamics model named SPHysics. The code is developed to study free-surface flow phenomena where Eulerian methods can be difficult to apply, such as waves or impact of dam-breaks on off-shore structures. DualSPHysics is a set of C++, CUDA and Java codes designed to deal with real-life engineering problems. + +https://dual.sphysics.org/ # Available modules @@ -17,8 +21,8 @@ To start using DualSPHysics, load one of these modules using a `module load` com module load DualSPHysics/5.0.175-GCC-11.2.0-CUDA-11.4.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DualSPHysics/5.0.175-GCC-11.2.0-CUDA-11.4.1|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DualSPHysics/5.0.175-GCC-11.2.0-CUDA-11.4.1|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/DyMat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/DyMat.md index c13edd94e313..5b7fe1491e40 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/DyMat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/DyMat.md @@ -6,6 +6,10 @@ hide: DyMat ===== + +Read and process result files from Dymola and OpenModelica with Python. + +https://www.j-raedler.de/projects/DyMat # Available modules @@ -17,8 +21,8 @@ To start using DyMat, load one of these modules using a `module load` command li module load DyMat/0.7-foss-2021b-2020-12-12 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|DyMat/0.7-foss-2021b-2020-12-12|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|DyMat/0.7-foss-2021b-2020-12-12|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EDirect.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EDirect.md new file mode 100644 index 000000000000..096d2c19a053 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/EDirect.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +EDirect +======= + + +Entrez Direct (EDirect) provides access to the NCBI's suite ofinterconnected databases from a Unix terminal window. Search terms are enteredas command-line arguments. Individual operations are connected with Unix pipesto construct multi-step queries. Selected records can then be retrieved in avariety of formats. + +https://www.ncbi.nlm.nih.gov/books/NBK25501/ +# Available modules + + +The overview below shows which EDirect installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using EDirect, load one of these modules using a `module load` command like: + +```shell +module load EDirect/20.5.20231006-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|EDirect/20.5.20231006-GCCcore-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ELPA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ELPA.md index 9568ac340e07..74e323f07cce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ELPA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ELPA.md @@ -6,6 +6,10 @@ hide: ELPA ==== + +Eigenvalue SoLvers for Petaflop-Applications . + +https://elpa.rzg.mpg.de # Available modules @@ -17,13 +21,13 @@ To start using ELPA, load one of these modules using a `module load` command lik module load ELPA/2021.05.001-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ELPA/2021.05.001-intel-2021b|x|x|x|-|x|x|x|x| -|ELPA/2021.05.001-intel-2021a|-|x|x|-|x|x|x|x| -|ELPA/2021.05.001-foss-2021b|x|x|x|-|x|x|x|x| -|ELPA/2020.11.001-intel-2020b|-|x|x|x|x|x|x|x| -|ELPA/2019.11.001-intel-2019b|-|x|x|-|x|x|-|x| -|ELPA/2019.11.001-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ELPA/2021.05.001-intel-2021b|x|x|x|-|x|x| +|ELPA/2021.05.001-intel-2021a|-|x|x|-|x|x| +|ELPA/2021.05.001-foss-2021b|x|x|x|-|x|x| +|ELPA/2020.11.001-intel-2020b|-|x|x|x|x|x| +|ELPA/2019.11.001-intel-2019b|-|x|x|-|x|x| +|ELPA/2019.11.001-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EMBOSS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EMBOSS.md index 89849678cdc2..304f68c7128f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/EMBOSS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/EMBOSS.md @@ -6,6 +6,10 @@ hide: EMBOSS ====== + +EMBOSS is 'The European Molecular Biology Open Software Suite'. EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. + +https://emboss.sourceforge.net/ # Available modules @@ -17,9 +21,9 @@ To start using EMBOSS, load one of these modules using a `module load` command l module load EMBOSS/6.6.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|EMBOSS/6.6.0-foss-2021b|x|x|x|-|x|x|x|x| -|EMBOSS/6.6.0-GCC-8.3.0-Java-11|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|EMBOSS/6.6.0-foss-2021b|x|x|x|-|x|x| +|EMBOSS/6.6.0-GCC-8.3.0-Java-11|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ESM-2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ESM-2.md index 91df109c2dde..f0622765b806 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ESM-2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ESM-2.md @@ -6,6 +6,10 @@ hide: ESM-2 ===== + +ESM-2 outperforms all tested single-sequence protein language models across a range of structure prediction tasks. ESMFold harnesses the ESM-2 language model to generate accurate structure predictions end to end directly from the sequence of a protein. + +https://github.com/facebookresearch/esm # Available modules @@ -14,11 +18,19 @@ The overview below shows which ESM-2 installations are available per HPC-UGent T To start using ESM-2, load one of these modules using a `module load` command like: ```shell -module load ESM-2/2.0.0-foss-2021a +module load ESM-2/2.0.0-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ESM-2/2.0.0-foss-2022b|x|x|x|x|x|x| +|ESM-2/2.0.0-foss-2021a|x|x|x|-|x|x| + + +### ESM-2/2.0.0-foss-2022b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ESM-2/2.0.0-foss-2021a|x|x|x|-|x|x|x|x| +antlr4-python3-runtime-4.9.3, fair-esm-2.0.0, omegaconf-2.3.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ESMF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ESMF.md index 634e2c209a23..e1838a78bce6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ESMF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ESMF.md @@ -6,6 +6,10 @@ hide: ESMF ==== + +The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications. + +https://www.earthsystemcog.org/projects/esmf/ # Available modules @@ -17,12 +21,12 @@ To start using ESMF, load one of these modules using a `module load` command lik module load ESMF/8.2.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ESMF/8.2.0-foss-2021b|x|x|x|-|x|x|x|x| -|ESMF/8.1.1-foss-2021a|-|x|x|-|x|x|x|x| -|ESMF/8.0.1-intel-2020b|-|x|x|x|x|x|x|x| -|ESMF/8.0.1-foss-2020a|-|x|x|-|x|x|x|x| -|ESMF/8.0.0-intel-2019b|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ESMF/8.2.0-foss-2021b|x|x|x|-|x|x| +|ESMF/8.1.1-foss-2021a|-|x|x|-|x|x| +|ESMF/8.0.1-intel-2020b|-|x|x|x|x|x| +|ESMF/8.0.1-foss-2020a|-|x|x|-|x|x| +|ESMF/8.0.0-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ESMPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ESMPy.md index e7e8252194c6..685b8162b4a8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ESMPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ESMPy.md @@ -6,6 +6,10 @@ hide: ESMPy ===== + +Earth System Modeling Framework (ESMF) Python Interface + +https://earthsystemmodeling.org/esmpy # Available modules @@ -17,10 +21,10 @@ To start using ESMPy, load one of these modules using a `module load` command li module load ESMPy/8.0.1-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ESMPy/8.0.1-intel-2020b|-|x|x|-|x|x|x|x| -|ESMPy/8.0.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|ESMPy/8.0.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ESMPy/8.0.1-intel-2020b|-|x|x|-|x|x| +|ESMPy/8.0.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|ESMPy/8.0.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ETE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ETE.md index 073f9fb2ac0c..ff4316299638 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ETE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ETE.md @@ -6,6 +6,10 @@ hide: ETE === + +A Python framework for the analysis and visualization of trees + +http://etetoolkit.org # Available modules @@ -14,11 +18,12 @@ The overview below shows which ETE installations are available per HPC-UGent Tie To start using ETE, load one of these modules using a `module load` command like: ```shell -module load ETE/3.1.2-foss-2021b +module load ETE/3.1.3-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ETE/3.1.2-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ETE/3.1.3-foss-2022b|x|x|x|x|x|x| +|ETE/3.1.2-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EUKulele.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EUKulele.md index 786b728ea675..f202a72462ca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/EUKulele.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/EUKulele.md @@ -6,6 +6,10 @@ hide: EUKulele ======== + +EUKulele is a Python program for taxonomic annotation of microbes in metatranscriptomic and metagenomic samples, with special emphasis on eukaryote discovery. + +https://github.com/AlexanderLabWHOI/EUKulele # Available modules @@ -14,11 +18,25 @@ The overview below shows which EUKulele installations are available per HPC-UGen To start using EUKulele, load one of these modules using a `module load` command like: ```shell -module load EUKulele/1.0.4-foss-2020b +module load EUKulele/2.0.6-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|EUKulele/2.0.6-foss-2022a|x|x|x|x|x|x| +|EUKulele/1.0.4-foss-2020b|-|x|x|-|x|x| + + +### EUKulele/2.0.6-foss-2022a + +This is a list of extensions included in the module: + +dill-0.3.6, EUKulele-2.0.6, joblib-1.3.1, latexcodec-2.0.1, multiprocess-0.70.14, oset-0.1.3, pybtex-0.24.0, pybtex-docutils-1.0.3, pytest-cov-4.1.0, python-coveralls-2.9.3, sphinxcontrib-bibtex-1.0.0 + +### EUKulele/1.0.4-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|EUKulele/1.0.4-foss-2020b|-|x|x|-|x|x|-|x| +apipkg-1.5, coverage-5.4, dill-0.3.3, EUKulele-1.0.4, execnet-1.8.0, latexcodec-2.0.1, multiprocess-0.70.11.1, oset-0.1.3, pybtex-0.24.0, pybtex-docutils-1.0.0, pytest-cov-2.11.1, pytest-forked-1.3.0, pytest-xdist-2.2.1, python-coveralls-2.9.3, sphinxcontrib-bibtex-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EasyBuild.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EasyBuild.md index 7ab7dd116c65..cdf7a62e3169 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/EasyBuild.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/EasyBuild.md @@ -6,6 +6,10 @@ hide: EasyBuild ========= + +EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way. + +https://easybuilders.github.io/easybuild # Available modules @@ -14,33 +18,36 @@ The overview below shows which EasyBuild installations are available per HPC-UGe To start using EasyBuild, load one of these modules using a `module load` command like: ```shell -module load EasyBuild/4.8.0 +module load EasyBuild/4.9.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|EasyBuild/4.8.0|x|x|x|x|x|x|x|x| -|EasyBuild/4.7.1|x|x|x|x|x|x|x|x| -|EasyBuild/4.7.0|x|x|x|x|x|x|x|x| -|EasyBuild/4.6.2|x|x|x|x|x|x|x|x| -|EasyBuild/4.6.1|x|x|x|x|x|x|x|x| -|EasyBuild/4.6.0|x|x|x|x|x|x|x|x| -|EasyBuild/4.5.5|x|x|x|x|x|x|x|x| -|EasyBuild/4.5.4|x|x|x|x|x|x|x|x| -|EasyBuild/4.5.3|x|x|x|x|x|x|x|x| -|EasyBuild/4.5.2|x|x|x|x|x|x|x|x| -|EasyBuild/4.5.1|x|x|x|x|x|x|x|x| -|EasyBuild/4.5.0|x|x|x|x|x|x|x|x| -|EasyBuild/4.4.2|x|x|x|x|x|x|x|x| -|EasyBuild/4.4.1|x|x|x|x|x|x|x|x| -|EasyBuild/4.4.0|x|x|x|x|x|x|x|x| -|EasyBuild/4.3.4|x|x|x|x|x|x|x|x| -|EasyBuild/4.3.3|x|x|x|x|x|x|x|x| -|EasyBuild/4.3.2|x|x|x|x|x|x|x|x| -|EasyBuild/4.3.1|x|x|x|x|x|x|x|x| -|EasyBuild/4.3.0|x|x|x|x|x|x|x|x| -|EasyBuild/4.2.2|x|x|x|x|x|x|x|x| -|EasyBuild/4.2.1|x|x|x|x|x|x|x|x| -|EasyBuild/4.2.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|EasyBuild/4.9.0|x|x|x|x|x|x| +|EasyBuild/4.8.2|x|x|x|x|x|x| +|EasyBuild/4.8.1|x|x|x|x|x|x| +|EasyBuild/4.8.0|x|x|x|x|x|x| +|EasyBuild/4.7.1|x|x|x|x|x|x| +|EasyBuild/4.7.0|x|x|x|x|x|x| +|EasyBuild/4.6.2|x|x|x|x|x|x| +|EasyBuild/4.6.1|x|x|x|x|x|x| +|EasyBuild/4.6.0|x|x|x|x|x|x| +|EasyBuild/4.5.5|x|x|x|x|x|x| +|EasyBuild/4.5.4|x|x|x|x|x|x| +|EasyBuild/4.5.3|x|x|x|x|x|x| +|EasyBuild/4.5.2|x|x|x|x|x|x| +|EasyBuild/4.5.1|x|x|x|x|x|x| +|EasyBuild/4.5.0|x|x|x|x|x|x| +|EasyBuild/4.4.2|x|x|x|x|x|x| +|EasyBuild/4.4.1|x|x|x|x|x|x| +|EasyBuild/4.4.0|x|x|x|x|x|x| +|EasyBuild/4.3.4|x|x|x|x|x|x| +|EasyBuild/4.3.3|x|x|x|x|x|x| +|EasyBuild/4.3.2|x|x|x|x|x|x| +|EasyBuild/4.3.1|x|x|x|x|x|x| +|EasyBuild/4.3.0|x|x|x|x|x|x| +|EasyBuild/4.2.2|x|x|x|x|x|x| +|EasyBuild/4.2.1|x|x|x|x|x|x| +|EasyBuild/4.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Eigen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Eigen.md index 4e07ef034b69..2200e26b231e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Eigen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Eigen.md @@ -6,6 +6,10 @@ hide: Eigen ===== + +Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms. + +https://eigen.tuxfamily.org # Available modules @@ -14,20 +18,21 @@ The overview below shows which Eigen installations are available per HPC-UGent T To start using Eigen, load one of these modules using a `module load` command like: ```shell -module load Eigen/3.4.0-GCCcore-12.3.0 +module load Eigen/3.4.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Eigen/3.4.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Eigen/3.4.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Eigen/3.4.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Eigen/3.4.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Eigen/3.3.9-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Eigen/3.3.9-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Eigen/3.3.9-GCCcore-10.2.0|-|-|x|x|x|x|-|x| -|Eigen/3.3.8-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Eigen/3.3.7-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Eigen/3.3.7|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Eigen/3.4.0-GCCcore-13.2.0|x|x|x|x|x|x| +|Eigen/3.4.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Eigen/3.4.0-GCCcore-12.2.0|x|x|x|x|x|x| +|Eigen/3.4.0-GCCcore-11.3.0|x|x|x|x|x|x| +|Eigen/3.4.0-GCCcore-11.2.0|x|x|x|x|x|x| +|Eigen/3.3.9-GCCcore-11.2.0|x|x|x|x|x|x| +|Eigen/3.3.9-GCCcore-10.3.0|x|x|x|x|x|x| +|Eigen/3.3.9-GCCcore-10.2.0|-|-|x|x|x|x| +|Eigen/3.3.8-GCCcore-10.2.0|x|x|x|x|x|x| +|Eigen/3.3.7-GCCcore-9.3.0|x|x|x|x|x|x| +|Eigen/3.3.7|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Elk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Elk.md index 961aea4972e2..2e61ede977e0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Elk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Elk.md @@ -6,6 +6,10 @@ hide: Elk === + +An all-electron full-potential linearisedaugmented-plane wave (FP-LAPW) code with many advanced features. Writtenoriginally at Karl-Franzens-Universität Graz as a milestone of theEXCITING EU Research and Training Network, the code is designed to be assimple as possible so that new developments in the field of densityfunctional theory (DFT) can be added quickly and reliably. + +http://elk.sourceforge.net/ # Available modules @@ -17,8 +21,8 @@ To start using Elk, load one of these modules using a `module load` command like module load Elk/7.0.12-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Elk/7.0.12-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Elk/7.0.12-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/EpiSCORE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/EpiSCORE.md index 452a20902bbd..acc4ac580fa4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/EpiSCORE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/EpiSCORE.md @@ -6,6 +6,10 @@ hide: EpiSCORE ======== + +Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles + +https://github.com/aet21/EpiSCORE # Available modules @@ -17,8 +21,8 @@ To start using EpiSCORE, load one of these modules using a `module load` command module load EpiSCORE/0.9.5-20220621-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|EpiSCORE/0.9.5-20220621-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|EpiSCORE/0.9.5-20220621-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Excel-Writer-XLSX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Excel-Writer-XLSX.md index ad9d3dfa2eef..f35be1acbfdb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Excel-Writer-XLSX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Excel-Writer-XLSX.md @@ -6,6 +6,10 @@ hide: Excel-Writer-XLSX ================= + +The Excel::Writer::XLSX module can be used to create an Excel file in the 2007+ XLSX format.Multiple worksheets can be added to a workbook and formatting can be applied to cells. Text, numbers, and formulascan be written to the cells. + +https://metacpan.org/pod/Excel::Writer::XLSX # Available modules @@ -17,8 +21,8 @@ To start using Excel-Writer-XLSX, load one of these modules using a `module load module load Excel-Writer-XLSX/1.09-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Excel-Writer-XLSX/1.09-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Excel-Writer-XLSX/1.09-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Exonerate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Exonerate.md index 29ad3ecd82f4..766f6e4a5a22 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Exonerate.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Exonerate.md @@ -6,6 +6,10 @@ hide: Exonerate ========= + +Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. + +https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate # Available modules @@ -17,12 +21,12 @@ To start using Exonerate, load one of these modules using a `module load` comman module load Exonerate/2.4.0-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Exonerate/2.4.0-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|Exonerate/2.4.0-GCC-12.2.0|x|x|x|x|x|x|x|x| -|Exonerate/2.4.0-GCC-11.2.0|x|x|x|x|x|x|x|x| -|Exonerate/2.4.0-GCC-10.2.0|x|x|x|-|x|x|x|x| -|Exonerate/2.4.0-GCC-8.3.0|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Exonerate/2.4.0-iccifort-2019.5.281|-|x|x|-|x|x| +|Exonerate/2.4.0-GCC-12.2.0|x|x|x|x|x|x| +|Exonerate/2.4.0-GCC-11.2.0|x|x|x|x|x|x| +|Exonerate/2.4.0-GCC-10.2.0|x|x|x|-|x|x| +|Exonerate/2.4.0-GCC-8.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ExtremeLy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ExtremeLy.md new file mode 100644 index 000000000000..3c6c049fbd98 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ExtremeLy.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +ExtremeLy +========= + + +A python package for Extreme Value Analysis. + +https://github.com/SURYA-LAMICHANEY/ExtremeLy +# Available modules + + +The overview below shows which ExtremeLy installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using ExtremeLy, load one of these modules using a `module load` command like: + +```shell +module load ExtremeLy/2.3.0-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ExtremeLy/2.3.0-foss-2022a|x|x|x|x|x|x| + + +### ExtremeLy/2.3.0-foss-2022a + +This is a list of extensions included in the module: + +evt-0.0.2, ExtremeLy-2.3.0, seaborn-0.13.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FALCON.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FALCON.md index 8958dbad48c8..227a2150d2e6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FALCON.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FALCON.md @@ -6,6 +6,10 @@ hide: FALCON ====== + +Falcon: a set of tools for fast aligning long reads for consensus and assembly + +https://github.com/PacificBiosciences/FALCON # Available modules @@ -17,8 +21,15 @@ To start using FALCON, load one of these modules using a `module load` command l module load FALCON/1.8.8-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FALCON/1.8.8-intel-2019b-Python-2.7.16|-|x|x|-|x|x| + + +### FALCON/1.8.8-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FALCON/1.8.8-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +FALCON-1.8.8, networkx-1.10, pypeFLOW-20170504 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FASTA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FASTA.md new file mode 100644 index 000000000000..e34c7548afbc --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FASTA.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +FASTA +===== + + +The FASTA programs find regions of local or global (new) similarity between protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. + +https://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml +# Available modules + + +The overview below shows which FASTA installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using FASTA, load one of these modules using a `module load` command like: + +```shell +module load FASTA/36.3.8i-GCC-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FASTA/36.3.8i-GCC-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FASTX-Toolkit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FASTX-Toolkit.md index 5eb2556b22c1..e0faaddd599a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FASTX-Toolkit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FASTX-Toolkit.md @@ -6,6 +6,10 @@ hide: FASTX-Toolkit ============= + +The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. + +http://hannonlab.cshl.edu/fastx_toolkit/ # Available modules @@ -17,9 +21,16 @@ To start using FASTX-Toolkit, load one of these modules using a `module load` co module load FASTX-Toolkit/0.0.14-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FASTX-Toolkit/0.0.14-GCC-11.3.0|x|x|x|x|x|x| +|FASTX-Toolkit/0.0.14-GCC-9.3.0|-|x|x|-|x|x| + + +### FASTX-Toolkit/0.0.14-GCC-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FASTX-Toolkit/0.0.14-GCC-11.3.0|x|x|x|x|x|x|x|x| -|FASTX-Toolkit/0.0.14-GCC-9.3.0|-|x|x|-|x|x|x|x| +PerlIO::gzip-0.20 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FDS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FDS.md index ea5e154bd04c..b0d4f17b5d45 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FDS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FDS.md @@ -6,6 +6,10 @@ hide: FDS === + +Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires. + +https://pages.nist.gov/fds-smv/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which FDS installations are available per HPC-UGent Tie To start using FDS, load one of these modules using a `module load` command like: ```shell -module load FDS/6.7.9-intel-2022a +module load FDS/6.8.0-intel-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FDS/6.7.9-intel-2022a|x|x|x|-|x|x|x|x| -|FDS/6.7.7-intel-2021b|x|x|x|-|x|x|x|x| -|FDS/6.7.6-intel-2020b|-|x|x|x|x|x|x|x| -|FDS/6.7.5-intel-2020b|-|-|x|-|x|-|-|-| -|FDS/6.7.5-intel-2020a|-|x|x|-|x|x|x|x| -|FDS/6.7.4-intel-2020a|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FDS/6.8.0-intel-2022b|x|x|x|x|x|x| +|FDS/6.7.9-intel-2022a|x|x|x|-|x|x| +|FDS/6.7.7-intel-2021b|x|x|x|-|x|x| +|FDS/6.7.6-intel-2020b|-|x|x|x|x|x| +|FDS/6.7.5-intel-2020b|-|-|x|-|x|-| +|FDS/6.7.5-intel-2020a|-|x|x|-|x|x| +|FDS/6.7.4-intel-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FEniCS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FEniCS.md index f627fec78675..63c356ee303e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FEniCS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FEniCS.md @@ -6,6 +6,10 @@ hide: FEniCS ====== + +FEniCS is a computing platform for solving partial differential equations (PDEs). + +https://fenicsproject.org/ # Available modules @@ -17,8 +21,8 @@ To start using FEniCS, load one of these modules using a `module load` command l module load FEniCS/2019.1.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FEniCS/2019.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FEniCS/2019.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FFAVES.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FFAVES.md new file mode 100644 index 000000000000..b701a332a4e5 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FFAVES.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +FFAVES +====== + + +Functional Feature Amplification Via Entropy Sorting (FFAVES).Use FFAVES to amplify the signal of groups of co-regulating genes in an unsupervised, multivariate manner.By amplifying the signal of genes with correlated expression, while filtering out genes that are randomly expressed,we can identify a subset of genes more predictive of different cell types.The output of FFAVES can then be used in our second algorithm, entropy sort feature weighting (ESFW),to create a ranked list of genes that are most likely to pertain to distinct sub-populations of cells in an scRNA-seq dataset. + +https://github.com/aradley/FFAVES +# Available modules + + +The overview below shows which FFAVES installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using FFAVES, load one of these modules using a `module load` command like: + +```shell +module load FFAVES/2022.11.1-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FFAVES/2022.11.1-foss-2022a|x|x|x|x|x|x| + + +### FFAVES/2022.11.1-foss-2022a + +This is a list of extensions included in the module: + +dill-0.3.8, FFAVES-2022.11.1, multiprocess-0.70.16 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FFC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FFC.md index 4812d71cd755..0603442f2caf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FFC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FFC.md @@ -6,6 +6,10 @@ hide: FFC === + +The FEniCS Form Compiler (FFC) is a compiler for finite element variational forms. + +https://bitbucket.org/fenics-project/ffc # Available modules @@ -17,8 +21,8 @@ To start using FFC, load one of these modules using a `module load` command like module load FFC/2019.1.0.post0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FFC/2019.1.0.post0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FFC/2019.1.0.post0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.MPI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.MPI.md index e9fcdcb8ba1f..a7df0643780e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.MPI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.MPI.md @@ -6,6 +6,10 @@ hide: FFTW.MPI ======== + +FFTW is a C subroutine library for computing the discrete Fourier transform (DFT)in one or more dimensions, of arbitrary input size, and of both real and complex data. + +https://www.fftw.org # Available modules @@ -14,13 +18,14 @@ The overview below shows which FFTW.MPI installations are available per HPC-UGen To start using FFTW.MPI, load one of these modules using a `module load` command like: ```shell -module load FFTW.MPI/3.3.10-gompi-2023a +module load FFTW.MPI/3.3.10-gompi-2023b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FFTW.MPI/3.3.10-gompi-2023a|x|x|x|x|x|x|x|x| -|FFTW.MPI/3.3.10-gompi-2022b|x|x|x|x|x|x|x|x| -|FFTW.MPI/3.3.10-gompi-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FFTW.MPI/3.3.10-gompi-2023b|x|x|x|x|x|x| +|FFTW.MPI/3.3.10-gompi-2023a|x|x|x|x|x|x| +|FFTW.MPI/3.3.10-gompi-2022b|x|x|x|x|x|x| +|FFTW.MPI/3.3.10-gompi-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.md index c8d151c8a75b..d7b00efe386a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FFTW.md @@ -6,6 +6,10 @@ hide: FFTW ==== + +FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. + +http://www.fftw.org # Available modules @@ -17,23 +21,24 @@ To start using FFTW, load one of these modules using a `module load` command lik module load FFTW/3.3.10-gompi-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FFTW/3.3.10-gompi-2021b|x|x|x|x|x|x|x|x| -|FFTW/3.3.10-GCC-12.3.0|x|x|x|x|x|x|x|x| -|FFTW/3.3.10-GCC-12.2.0|x|x|x|x|x|x|x|x| -|FFTW/3.3.10-GCC-11.3.0|x|x|x|x|x|x|x|x| -|FFTW/3.3.9-intel-2021a|-|x|x|-|x|x|x|x| -|FFTW/3.3.9-gompi-2021a|x|x|x|x|x|x|x|x| -|FFTW/3.3.8-iomkl-2020a|-|x|-|-|-|-|-|-| -|FFTW/3.3.8-intelcuda-2020b|-|-|-|-|x|-|-|-| -|FFTW/3.3.8-intel-2020b|-|x|x|x|x|x|x|x| -|FFTW/3.3.8-intel-2020a|-|x|x|-|x|x|x|x| -|FFTW/3.3.8-intel-2019b|-|x|x|-|x|x|x|x| -|FFTW/3.3.8-iimpi-2020b|-|x|-|-|-|-|-|-| -|FFTW/3.3.8-gompic-2020b|x|-|-|-|x|-|-|-| -|FFTW/3.3.8-gompi-2020b|x|x|x|x|x|x|x|x| -|FFTW/3.3.8-gompi-2020a|-|x|x|-|x|x|x|x| -|FFTW/3.3.8-gompi-2019b|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FFTW/3.3.10-gompi-2021b|x|x|x|x|x|x| +|FFTW/3.3.10-GCC-13.2.0|x|x|x|x|x|x| +|FFTW/3.3.10-GCC-12.3.0|x|x|x|x|x|x| +|FFTW/3.3.10-GCC-12.2.0|x|x|x|x|x|x| +|FFTW/3.3.10-GCC-11.3.0|x|x|x|x|x|x| +|FFTW/3.3.9-intel-2021a|-|x|x|-|x|x| +|FFTW/3.3.9-gompi-2021a|x|x|x|x|x|x| +|FFTW/3.3.8-iomkl-2020a|-|x|-|-|-|-| +|FFTW/3.3.8-intelcuda-2020b|-|-|-|-|x|-| +|FFTW/3.3.8-intel-2020b|-|x|x|x|x|x| +|FFTW/3.3.8-intel-2020a|-|x|x|-|x|x| +|FFTW/3.3.8-intel-2019b|-|x|x|-|x|x| +|FFTW/3.3.8-iimpi-2020b|-|x|-|-|-|-| +|FFTW/3.3.8-gompic-2020b|x|-|-|-|x|-| +|FFTW/3.3.8-gompi-2020b|x|x|x|x|x|x| +|FFTW/3.3.8-gompi-2020a|-|x|x|-|x|x| +|FFTW/3.3.8-gompi-2019b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FFmpeg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FFmpeg.md index a1ca0f28e7d3..7312240b4cb3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FFmpeg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FFmpeg.md @@ -6,6 +6,10 @@ hide: FFmpeg ====== + +A complete, cross-platform solution to record, convert and stream audio and video. + +https://www.ffmpeg.org/ # Available modules @@ -14,16 +18,18 @@ The overview below shows which FFmpeg installations are available per HPC-UGent To start using FFmpeg, load one of these modules using a `module load` command like: ```shell -module load FFmpeg/4.4.2-GCCcore-11.3.0 +module load FFmpeg/6.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FFmpeg/4.4.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|FFmpeg/4.3.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|FFmpeg/4.3.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|FFmpeg/4.3.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|FFmpeg/4.2.2-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|FFmpeg/4.2.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FFmpeg/6.0-GCCcore-12.3.0|x|x|x|x|x|x| +|FFmpeg/5.1.2-GCCcore-12.2.0|x|x|x|x|x|x| +|FFmpeg/4.4.2-GCCcore-11.3.0|x|x|x|x|x|x| +|FFmpeg/4.3.2-GCCcore-11.2.0|x|x|x|x|x|x| +|FFmpeg/4.3.2-GCCcore-10.3.0|x|x|x|x|x|x| +|FFmpeg/4.3.1-GCCcore-10.2.0|x|x|x|x|x|x| +|FFmpeg/4.2.2-GCCcore-9.3.0|-|x|x|-|x|x| +|FFmpeg/4.2.1-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FIAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FIAT.md index e01e0c9550fa..ef18656287a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FIAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FIAT.md @@ -6,6 +6,10 @@ hide: FIAT ==== + +The FInite element Automatic Tabulator (FIAT) supportsgeneration of arbitrary order instances of the Lagrange elements onlines, triangles, and tetrahedra. It is also capable of generatingarbitrary order instances of Jacobi-type quadrature rules on the sameelement shapes. + +https://bitbucket.org/fenics-project/fiat # Available modules @@ -17,8 +21,8 @@ To start using FIAT, load one of these modules using a `module load` command lik module load FIAT/2019.1.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FIAT/2019.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FIAT/2019.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FIGARO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FIGARO.md index 02f0b3064072..62d51c5d9acb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FIGARO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FIGARO.md @@ -6,6 +6,10 @@ hide: FIGARO ====== + +FIGARO: An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters. + +https://github.com/Zymo-Research/figaro # Available modules @@ -17,8 +21,8 @@ To start using FIGARO, load one of these modules using a `module load` command l module load FIGARO/1.1.2-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FIGARO/1.1.2-intel-2020b|-|-|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FIGARO/1.1.2-intel-2020b|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLAC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLAC.md index 0c22dd70f415..7dad34e93abd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLAC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLAC.md @@ -6,6 +6,10 @@ hide: FLAC ==== + +FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaningthat audio is compressed in FLAC without any loss in quality. + +https://xiph.org/flac/ # Available modules @@ -14,15 +18,16 @@ The overview below shows which FLAC installations are available per HPC-UGent Ti To start using FLAC, load one of these modules using a `module load` command like: ```shell -module load FLAC/1.4.2-GCCcore-12.2.0 +module load FLAC/1.4.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FLAC/1.4.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|FLAC/1.3.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|FLAC/1.3.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|FLAC/1.3.3-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|FLAC/1.3.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FLAC/1.4.2-GCCcore-12.3.0|x|x|x|x|x|x| +|FLAC/1.4.2-GCCcore-12.2.0|x|x|x|x|x|x| +|FLAC/1.3.4-GCCcore-11.3.0|x|x|x|x|x|x| +|FLAC/1.3.3-GCCcore-11.2.0|x|x|x|x|x|x| +|FLAC/1.3.3-GCCcore-10.3.0|x|x|x|x|x|x| +|FLAC/1.3.3-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLAIR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLAIR.md index 98ef85a289af..645e58044e2f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLAIR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLAIR.md @@ -6,6 +6,10 @@ hide: FLAIR ===== + +FLAIR (Full-Length Alternative Isoform analysis of RNA) for the correction, isoform definition, and alternative splicing analysis of noisy reads. FLAIR has primarily been used for nanopore cDNA, native RNA, and PacBio sequencing reads. + +https://github.com/BrooksLabUCSC/flair # Available modules @@ -17,9 +21,22 @@ To start using FLAIR, load one of these modules using a `module load` command li module load FLAIR/1.5.1-20200630-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FLAIR/1.5.1-20200630-foss-2019b-Python-3.7.4|-|x|x|-|x|-| +|FLAIR/1.5-foss-2019b-Python-3.7.4|-|x|x|-|x|-| + + +### FLAIR/1.5.1-20200630-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +kerneltree-0.0.5, ncls-0.0.53 + +### FLAIR/1.5-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FLAIR/1.5.1-20200630-foss-2019b-Python-3.7.4|-|x|x|-|x|-|-|-| -|FLAIR/1.5-foss-2019b-Python-3.7.4|-|x|x|-|x|-|-|-| +kerneltree-0.0.5, ncls-0.0.53 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLANN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLANN.md new file mode 100644 index 000000000000..86267723f3ff --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLANN.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +FLANN +===== + + +FLANN is a library for performing fast approximate nearest neighbor searches in high dimensional spaces. + +https://github.com/mariusmuja/flann/ +# Available modules + + +The overview below shows which FLANN installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using FLANN, load one of these modules using a `module load` command like: + +```shell +module load FLANN/1.9.2-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FLANN/1.9.2-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLASH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLASH.md index 5bc69c3f655a..8fe123c87774 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLASH.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLASH.md @@ -6,6 +6,10 @@ hide: FLASH ===== + +FLASH (Fast Length Adjustment of SHort reads) is a very fastand accurate software tool to merge paired-end reads from next-generationsequencing experiments. FLASH is designed to merge pairs of reads when theoriginal DNA fragments are shorter than twice the length of reads. Theresulting longer reads can significantly improve genome assemblies. They canalso improve transcriptome assembly when FLASH is used to merge RNA-seq data. + +https://ccb.jhu.edu/software/FLASH/ # Available modules @@ -17,10 +21,10 @@ To start using FLASH, load one of these modules using a `module load` command li module load FLASH/2.2.00-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FLASH/2.2.00-foss-2020b|-|x|x|x|x|x|x|x| -|FLASH/2.2.00-GCC-11.2.0|x|x|x|-|x|x|x|x| -|FLASH/1.2.11-GCC-8.3.0|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FLASH/2.2.00-foss-2020b|-|x|x|x|x|x| +|FLASH/2.2.00-GCC-11.2.0|x|x|x|-|x|x| +|FLASH/1.2.11-GCC-8.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLTK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLTK.md index d05dded179cb..1970f6915146 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLTK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLTK.md @@ -6,6 +6,10 @@ hide: FLTK ==== + +FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation. + +https://www.fltk.org # Available modules @@ -17,9 +21,9 @@ To start using FLTK, load one of these modules using a `module load` command lik module load FLTK/1.3.5-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FLTK/1.3.5-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|FLTK/1.3.5-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FLTK/1.3.5-GCCcore-10.2.0|-|x|x|x|x|x| +|FLTK/1.3.5-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FLUENT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FLUENT.md index 39b209042c45..dc33c778a41a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FLUENT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FLUENT.md @@ -6,6 +6,10 @@ hide: FLUENT ====== + +ANSYS FLUENT software contains the broad physical modeling capabilities neededto model flow, turbulence, heat transfer, and reactions for industrial applications ranging fromair flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms,from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants. + +https://www.ansys.com/products/fluids/ansys-fluent # Available modules @@ -17,11 +21,11 @@ To start using FLUENT, load one of these modules using a `module load` command l module load FLUENT/2023R1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FLUENT/2023R1|x|x|x|x|x|x|x|x| -|FLUENT/2022R1|-|x|x|-|x|x|x|x| -|FLUENT/2021R2|-|x|x|x|x|x|x|x| -|FLUENT/2019R3|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FLUENT/2023R1|x|x|x|x|x|x| +|FLUENT/2022R1|-|x|x|-|x|x| +|FLUENT/2021R2|x|x|x|x|x|x| +|FLUENT/2019R3|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FMM3D.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FMM3D.md index f1b5f43effc7..9c81bbe20ef5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FMM3D.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FMM3D.md @@ -6,6 +6,10 @@ hide: FMM3D ===== + +Flatiron Institute Fast Multipole Libraries: a set of libraries to compute N-bodyinteractions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on amulti-core shared-memory machine. + +https://fmm3d.readthedocs.io # Available modules @@ -17,8 +21,8 @@ To start using FMM3D, load one of these modules using a `module load` command li module load FMM3D/20211018-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FMM3D/20211018-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FMM3D/20211018-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FMPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FMPy.md index f4675ee2d7b7..eeb905e0009a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FMPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FMPy.md @@ -6,6 +6,10 @@ hide: FMPy ==== + +FMPy is a free Python library to simulate Functional Mock-up Units (FMUs). + +https://github.com/CATIA-Systems/FMPy # Available modules @@ -17,8 +21,15 @@ To start using FMPy, load one of these modules using a `module load` command lik module load FMPy/0.3.2-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FMPy/0.3.2-foss-2021a|-|x|x|-|x|x| + + +### FMPy/0.3.2-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FMPy/0.3.2-foss-2021a|-|x|x|-|x|x|x|x| +dash-2.0.0, dash-bootstrap-components-1.0.0, dash-core-components-2.0.0, dash-html-components-2.0.0, dash-table-5.0.0, Flask-Compress-1.10.1, FMPy-0.3.2, idna-2.8, lark-parser-0.12.0, msgpack-1.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FSL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FSL.md index 18343583b29f..3cc4ca84b21b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FSL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FSL.md @@ -6,6 +6,10 @@ hide: FSL === + +FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. + +https://www.fmrib.ox.ac.uk/fsl/ # Available modules @@ -17,10 +21,17 @@ To start using FSL, load one of these modules using a `module load` command like module load FSL/6.0.7.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FSL/6.0.7.2|x|x|x|x|x|x| +|FSL/6.0.5.1-foss-2021a|-|x|x|-|x|x| +|FSL/6.0.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### FSL/6.0.5.1-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FSL/6.0.7.2|x|x|x|x|x|x|x|x| -|FSL/6.0.5.1-foss-2021a|-|x|x|-|x|x|x|x| -|FSL/6.0.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +fslpy-3.5.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FabIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FabIO.md index fe764588787c..1dc6b8537fb2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FabIO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FabIO.md @@ -6,6 +6,10 @@ hide: FabIO ===== + +FabIO is an I/O library for images produced by 2D X-ray detectors and written in Python. FabIO support images detectors from a dozen of companies (including Mar, Dectris, ADSC, Hamamatsu, Oxford, ...), for a total of 20 different file formats (like CBF, EDF, TIFF, ...) and offers an unified interface to their headers (as a python dictionary) and datasets (as a numpy ndarray of integers or floats). + +http://www.silx.org # Available modules @@ -17,8 +21,8 @@ To start using FabIO, load one of these modules using a `module load` command li module load FabIO/0.11.0-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FabIO/0.11.0-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FabIO/0.11.0-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Faiss.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Faiss.md index 3d612916e329..72a169f36f23 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Faiss.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Faiss.md @@ -6,6 +6,10 @@ hide: Faiss ===== + +Faiss is a library for efficient similarity search and clustering of dense vectors. + +https://github.com/facebookresearch/faiss # Available modules @@ -17,8 +21,8 @@ To start using Faiss, load one of these modules using a `module load` command li module load Faiss/1.7.2-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Faiss/1.7.2-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Faiss/1.7.2-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastANI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastANI.md index 20668dd7b903..216dceae8878 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastANI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastANI.md @@ -6,6 +6,10 @@ hide: FastANI ======= + +FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies. + +https://github.com/ParBLiSS/FastANI # Available modules @@ -14,16 +18,17 @@ The overview below shows which FastANI installations are available per HPC-UGent To start using FastANI, load one of these modules using a `module load` command like: ```shell -module load FastANI/1.33-intel-compilers-2021.4.0 +module load FastANI/1.34-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FastANI/1.33-intel-compilers-2021.4.0|x|x|x|-|x|x|x|x| -|FastANI/1.33-iccifort-2020.4.304|-|x|x|x|x|x|x|x| -|FastANI/1.33-GCC-11.2.0|x|x|x|-|x|x|x|x| -|FastANI/1.33-GCC-10.2.0|-|x|x|-|x|-|x|-| -|FastANI/1.31-iccifort-2020.1.217|-|x|x|-|x|x|x|x| -|FastANI/1.3-iccifort-2019.5.281|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FastANI/1.34-GCC-12.3.0|x|x|x|x|x|x| +|FastANI/1.33-intel-compilers-2021.4.0|x|x|x|-|x|x| +|FastANI/1.33-iccifort-2020.4.304|-|x|x|x|x|x| +|FastANI/1.33-GCC-11.2.0|x|x|x|-|x|x| +|FastANI/1.33-GCC-10.2.0|-|x|x|-|x|-| +|FastANI/1.31-iccifort-2020.1.217|-|x|x|-|x|x| +|FastANI/1.3-iccifort-2019.5.281|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastME.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastME.md index 71092c965e7d..fd9474ad8c80 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastME.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastME.md @@ -6,6 +6,10 @@ hide: FastME ====== + +FastME: a comprehensive, accurate and fast distance-based phylogeny inference program. + +https://www.atgc-montpellier.fr/fastme/ # Available modules @@ -14,13 +18,14 @@ The overview below shows which FastME installations are available per HPC-UGent To start using FastME, load one of these modules using a `module load` command like: ```shell -module load FastME/2.1.6.1-iccifort-2019.5.281 +module load FastME/2.1.6.3-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FastME/2.1.6.1-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|FastME/2.1.6.1-GCC-10.2.0|-|x|x|x|x|x|x|x| -|FastME/2.1.6.1-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FastME/2.1.6.3-GCC-12.3.0|x|x|x|x|x|x| +|FastME/2.1.6.1-iccifort-2019.5.281|-|x|x|-|x|x| +|FastME/2.1.6.1-GCC-10.2.0|-|x|x|x|x|x| +|FastME/2.1.6.1-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastQC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastQC.md index ceb0cfe23c91..6892979141b4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastQC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastQC.md @@ -6,6 +6,10 @@ hide: FastQC ====== + +FastQC is a quality control application for high throughputsequence data. It reads in sequence data in a variety of formats and can eitherprovide an interactive application to review the results of several differentQC checks, or create an HTML based report which can be integrated into apipeline. + +https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ # Available modules @@ -17,8 +21,8 @@ To start using FastQC, load one of these modules using a `module load` command l module load FastQC/0.11.9-Java-11 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FastQC/0.11.9-Java-11|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FastQC/0.11.9-Java-11|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastQ_Screen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastQ_Screen.md index 79738a6bf442..d45f85307a2e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastQ_Screen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastQ_Screen.md @@ -6,6 +6,10 @@ hide: FastQ_Screen ============ + +FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect. + +http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/ # Available modules @@ -17,8 +21,8 @@ To start using FastQ_Screen, load one of these modules using a `module load` com module load FastQ_Screen/0.14.0-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FastQ_Screen/0.14.0-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FastQ_Screen/0.14.0-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastTree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastTree.md index 89f4af9782e5..b9be3c9f4215 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastTree.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastTree.md @@ -6,6 +6,10 @@ hide: FastTree ======== + +FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory. + +http://www.microbesonline.org/fasttree/ # Available modules @@ -14,15 +18,16 @@ The overview below shows which FastTree installations are available per HPC-UGen To start using FastTree, load one of these modules using a `module load` command like: ```shell -module load FastTree/2.1.11-GCCcore-11.3.0 +module load FastTree/2.1.11-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FastTree/2.1.11-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|FastTree/2.1.11-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|FastTree/2.1.11-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|FastTree/2.1.11-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|FastTree/2.1.11-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FastTree/2.1.11-GCCcore-12.3.0|x|x|x|x|x|x| +|FastTree/2.1.11-GCCcore-11.3.0|x|x|x|x|x|x| +|FastTree/2.1.11-GCCcore-11.2.0|x|x|x|-|x|x| +|FastTree/2.1.11-GCCcore-10.2.0|-|x|x|x|x|x| +|FastTree/2.1.11-GCCcore-9.3.0|-|x|x|-|x|x| +|FastTree/2.1.11-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FastViromeExplorer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FastViromeExplorer.md index fa4ba186ee30..696b086c9e8d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FastViromeExplorer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FastViromeExplorer.md @@ -6,6 +6,10 @@ hide: FastViromeExplorer ================== + +Identify the viruses/phages and their abundance in the viral metagenomics data. + +https://code.vt.edu/saima5/FastViromeExplorer # Available modules @@ -17,8 +21,8 @@ To start using FastViromeExplorer, load one of these modules using a `module loa module load FastViromeExplorer/20180422-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FastViromeExplorer/20180422-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FastViromeExplorer/20180422-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Fastaq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Fastaq.md new file mode 100644 index 000000000000..f17337132f9f --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Fastaq.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Fastaq +====== + + +Python3 scripts to manipulate FASTA and FASTQ files. + +https://github.com/sanger-pathogens/Fastaq +# Available modules + + +The overview below shows which Fastaq installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Fastaq, load one of these modules using a `module load` command like: + +```shell +module load Fastaq/3.17.0-GCC-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Fastaq/3.17.0-GCC-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Fiji.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Fiji.md index 2ff68f5e1a23..e7d7661a237a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Fiji.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Fiji.md @@ -6,6 +6,10 @@ hide: Fiji ==== + +Fiji is an image processing package—a 'batteries-included' distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.This release is based on ImageJ-2.1.0 and Fiji-2.1.1 + +https://fiji.sc # Available modules @@ -17,8 +21,8 @@ To start using Fiji, load one of these modules using a `module load` command lik module load Fiji/2.9.0-Java-1.8 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Fiji/2.9.0-Java-1.8|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Fiji/2.9.0-Java-1.8|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Filtlong.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Filtlong.md index 7f36c8075024..c52f187c4705 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Filtlong.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Filtlong.md @@ -6,6 +6,10 @@ hide: Filtlong ======== + +Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter + +https://github.com/rrwick/Filtlong # Available modules @@ -17,8 +21,8 @@ To start using Filtlong, load one of these modules using a `module load` command module load Filtlong/0.2.0-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Filtlong/0.2.0-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Filtlong/0.2.0-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Fiona.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Fiona.md index eb5de6dcc58f..92f6b7193aff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Fiona.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Fiona.md @@ -6,6 +6,10 @@ hide: Fiona ===== + +Fiona is designed to be simple and dependable. It focuses on reading and writing datain standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries,mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data usingmulti-layered GIS formats and zipped virtual file systems and integrates readily with other Python GISpackages such as pyproj, Rtree, and Shapely. + +https://github.com/Toblerity/Fiona # Available modules @@ -14,17 +18,67 @@ The overview below shows which Fiona installations are available per HPC-UGent T To start using Fiona, load one of these modules using a `module load` command like: ```shell -module load Fiona/1.9.2-foss-2022b +module load Fiona/1.9.5-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Fiona/1.9.2-foss-2022b|x|x|x|x|x|x|x|x| -|Fiona/1.8.21-foss-2022a|x|x|x|x|x|x|x|x| -|Fiona/1.8.21-foss-2021b|x|x|x|x|x|x|x|x| -|Fiona/1.8.20-intel-2020b|-|x|x|-|x|x|x|x| -|Fiona/1.8.20-foss-2020b|-|x|x|x|x|x|x|x| -|Fiona/1.8.16-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|Fiona/1.8.13-intel-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Fiona/1.9.5-foss-2023a|x|x|x|x|x|x| +|Fiona/1.9.2-foss-2022b|x|x|x|x|x|x| +|Fiona/1.8.21-foss-2022a|x|x|x|x|x|x| +|Fiona/1.8.21-foss-2021b|x|x|x|x|x|x| +|Fiona/1.8.20-intel-2020b|-|x|x|-|x|x| +|Fiona/1.8.20-foss-2020b|-|x|x|x|x|x| +|Fiona/1.8.16-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|Fiona/1.8.13-intel-2019b-Python-3.7.4|-|-|x|-|x|x| + + +### Fiona/1.9.5-foss-2023a + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, fiona-1.9.5, munch-4.0.0 + +### Fiona/1.9.2-foss-2022b + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, Fiona-1.9.2, munch-2.5.0 + +### Fiona/1.8.21-foss-2022a + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.21, munch-2.5.0 + +### Fiona/1.8.21-foss-2021b + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.21, munch-2.5.0 + +### Fiona/1.8.20-intel-2020b + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.20, munch-2.5.0 + +### Fiona/1.8.20-foss-2020b + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.7.2, Fiona-1.8.20, munch-2.5.0 + +### Fiona/1.8.16-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +click-plugins-1.1.1, cligj-0.5.0, Fiona-1.8.16, munch-2.5.0 + +### Fiona/1.8.13-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +click-7.1.1, click-plugins-1.1.1, cligj-0.5.0, Fiona-1.8.13, munch-2.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Flask.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Flask.md index 4ea1870c67bf..9a287f3a3abb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Flask.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Flask.md @@ -6,6 +6,10 @@ hide: Flask ===== + +Flask is a lightweight WSGI web application framework. It is designed to makegetting started quick and easy, with the ability to scale up to complexapplications.This module includes the Flask extensions: Flask-Cors + +https://www.palletsprojects.com/p/flask/ # Available modules @@ -17,11 +21,36 @@ To start using Flask, load one of these modules using a `module load` command li module load Flask/2.2.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Flask/2.2.2-GCCcore-11.3.0|x|x|x|x|x|x| +|Flask/2.0.2-GCCcore-11.2.0|x|x|x|-|x|x| +|Flask/1.1.4-GCCcore-10.3.0|x|x|x|x|x|x| +|Flask/1.1.2-GCCcore-10.2.0|-|x|x|x|x|x| + + +### Flask/2.2.2-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +asgiref-3.5.2, cachelib-0.9.0, Flask-2.2.2, Flask-Cors-3.0.10, Flask-Session-0.4.0, itsdangerous-2.1.2, Werkzeug-2.2.2 + +### Flask/2.0.2-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +asgiref-3.4.1, cachelib-0.6.0, Flask-2.0.2, Flask-Cors-3.0.10, Flask-Session-0.4.0, itsdangerous-2.0.1, Werkzeug-2.0.2 + +### Flask/1.1.4-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +cachelib-0.4.1, Flask-1.1.4, Flask-Cors-3.0.10, Flask-Session-0.4.0, itsdangerous-1.1.0, Werkzeug-1.0.1 + +### Flask/1.1.2-GCCcore-10.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Flask/2.2.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Flask/2.0.2-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Flask/1.1.4-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Flask/1.1.2-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +Flask-1.1.2, Flask-Cors-3.0.9, itsdangerous-1.1.0, Werkzeug-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FlexiBLAS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FlexiBLAS.md index 371ac8e1557e..9c6346d51466 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FlexiBLAS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FlexiBLAS.md @@ -6,6 +6,10 @@ hide: FlexiBLAS ========= + +FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementationused by a program without recompiling or relinking it. + +https://gitlab.mpi-magdeburg.mpg.de/software/flexiblas-release # Available modules @@ -14,15 +18,16 @@ The overview below shows which FlexiBLAS installations are available per HPC-UGe To start using FlexiBLAS, load one of these modules using a `module load` command like: ```shell -module load FlexiBLAS/3.3.1-GCC-12.3.0 +module load FlexiBLAS/3.3.1-GCC-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FlexiBLAS/3.3.1-GCC-12.3.0|x|x|x|x|x|x|x|x| -|FlexiBLAS/3.2.1-GCC-12.2.0|x|x|x|x|x|x|x|x| -|FlexiBLAS/3.2.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|FlexiBLAS/3.0.4-GCC-11.2.0|x|x|x|x|x|x|x|x| -|FlexiBLAS/3.0.4-GCC-10.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FlexiBLAS/3.3.1-GCC-13.2.0|x|x|x|x|x|x| +|FlexiBLAS/3.3.1-GCC-12.3.0|x|x|x|x|x|x| +|FlexiBLAS/3.2.1-GCC-12.2.0|x|x|x|x|x|x| +|FlexiBLAS/3.2.0-GCC-11.3.0|x|x|x|x|x|x| +|FlexiBLAS/3.0.4-GCC-11.2.0|x|x|x|x|x|x| +|FlexiBLAS/3.0.4-GCC-10.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Flye.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Flye.md index d0a38eefaabb..5d581d513cae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Flye.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Flye.md @@ -6,6 +6,10 @@ hide: Flye ==== + +Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. + +https://github.com/fenderglass/Flye # Available modules @@ -14,17 +18,18 @@ The overview below shows which Flye installations are available per HPC-UGent Ti To start using Flye, load one of these modules using a `module load` command like: ```shell -module load Flye/2.9-intel-compilers-2021.2.0 +module load Flye/2.9.2-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Flye/2.9-intel-compilers-2021.2.0|-|x|x|-|x|x|x|x| -|Flye/2.9-GCC-10.3.0|-|x|x|-|x|-|x|-| -|Flye/2.8.3-iccifort-2020.4.304|-|x|x|-|x|-|x|-| -|Flye/2.8.3-GCC-10.2.0|-|x|x|-|x|-|x|-| -|Flye/2.8.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|Flye/2.7-intel-2019b-Python-3.7.4|-|x|-|-|-|-|-|-| -|Flye/2.6-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Flye/2.9.2-GCC-11.3.0|x|x|x|x|x|x| +|Flye/2.9-intel-compilers-2021.2.0|-|x|x|-|x|x| +|Flye/2.9-GCC-10.3.0|x|x|x|x|x|-| +|Flye/2.8.3-iccifort-2020.4.304|-|x|x|-|x|-| +|Flye/2.8.3-GCC-10.2.0|-|x|x|-|x|-| +|Flye/2.8.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|Flye/2.7-intel-2019b-Python-3.7.4|-|x|-|-|-|-| +|Flye/2.6-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FragGeneScan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FragGeneScan.md index d7d8c294a02b..cb8783770f3a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FragGeneScan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FragGeneScan.md @@ -6,6 +6,10 @@ hide: FragGeneScan ============ + +FragGeneScan is an application for finding (fragmented) genes in short reads. + +https://omics.informatics.indiana.edu/FragGeneScan/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which FragGeneScan installations are available per HPC- To start using FragGeneScan, load one of these modules using a `module load` command like: ```shell -module load FragGeneScan/1.31-GCCcore-11.2.0 +module load FragGeneScan/1.31-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FragGeneScan/1.31-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|FragGeneScan/1.31-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FragGeneScan/1.31-GCCcore-11.3.0|x|x|x|x|x|x| +|FragGeneScan/1.31-GCCcore-11.2.0|x|x|x|-|x|x| +|FragGeneScan/1.31-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeBarcodes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeBarcodes.md index 105367845cee..57415831aaa3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeBarcodes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeBarcodes.md @@ -6,6 +6,10 @@ hide: FreeBarcodes ============ + +A package for the generation and decoding of FREE divergence error-correcting DNA barcodes + +https://github.com/hawkjo/freebarcodes # Available modules @@ -17,8 +21,15 @@ To start using FreeBarcodes, load one of these modules using a `module load` com module load FreeBarcodes/3.0.a5-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FreeBarcodes/3.0.a5-foss-2021b|x|x|x|-|x|x| + + +### FreeBarcodes/3.0.a5-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FreeBarcodes/3.0.a5-foss-2021b|x|x|x|-|x|x|x|x| +dill-0.3.4, FreeBarcodes-3.0.a5, multiprocess-0.70.12.2, pathos-0.2.8, pox-0.3.0, ppft-1.6.6.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeFEM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeFEM.md index 49ad12c71147..2c0fb8a21e3a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeFEM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeFEM.md @@ -6,6 +6,10 @@ hide: FreeFEM ======= + +FreeFEM offers a fast interpolation algorithm and a language for the manipulation of data on multiple meshes. + +https://freefem.org # Available modules @@ -17,8 +21,8 @@ To start using FreeFEM, load one of these modules using a `module load` command module load FreeFEM/4.5-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FreeFEM/4.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FreeFEM/4.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeImage.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeImage.md new file mode 100644 index 000000000000..4e5cfb5256e4 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeImage.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +FreeImage +========= + + +FreeImage is an Open Source library project for developers who would like to support popular graphicsimage formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy touse, fast, multithreading safe. + +http://freeimage.sourceforge.net +# Available modules + + +The overview below shows which FreeImage installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using FreeImage, load one of these modules using a `module load` command like: + +```shell +module load FreeImage/3.18.0-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FreeImage/3.18.0-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeSurfer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeSurfer.md index 0723adadb369..aa70b08c82ac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeSurfer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeSurfer.md @@ -6,6 +6,10 @@ hide: FreeSurfer ========== + +FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data. + +https://surfer.nmr.mgh.harvard.edu/ # Available modules @@ -17,9 +21,9 @@ To start using FreeSurfer, load one of these modules using a `module load` comma module load FreeSurfer/7.3.2-centos8_x86_64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FreeSurfer/7.3.2-centos8_x86_64|x|x|x|-|x|x|x|x| -|FreeSurfer/7.2.0-centos8_x86_64|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FreeSurfer/7.3.2-centos8_x86_64|x|x|x|-|x|x| +|FreeSurfer/7.2.0-centos8_x86_64|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeXL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeXL.md index 625d37344c5b..0a0749dc52ff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FreeXL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FreeXL.md @@ -6,6 +6,10 @@ hide: FreeXL ====== + +FreeXL is an open source library to extract valid data from within anExcel (.xls) spreadsheet. + +https://www.gaia-gis.it/fossil/freexl/index # Available modules @@ -17,8 +21,8 @@ To start using FreeXL, load one of these modules using a `module load` command l module load FreeXL/1.0.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FreeXL/1.0.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FreeXL/1.0.6-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FriBidi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FriBidi.md index f001c5ca20b6..99aec85c847e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FriBidi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FriBidi.md @@ -6,6 +6,10 @@ hide: FriBidi ======= + +The Free Implementation of the Unicode Bidirectional Algorithm. + +https://github.com/fribidi/fribidi # Available modules @@ -14,17 +18,18 @@ The overview below shows which FriBidi installations are available per HPC-UGent To start using FriBidi, load one of these modules using a `module load` command like: ```shell -module load FriBidi/1.0.12-GCCcore-12.2.0 +module load FriBidi/1.0.12-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FriBidi/1.0.12-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|FriBidi/1.0.12-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|FriBidi/1.0.10-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|FriBidi/1.0.10-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|FriBidi/1.0.10-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|FriBidi/1.0.9-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|FriBidi/1.0.5-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FriBidi/1.0.12-GCCcore-12.3.0|x|x|x|x|x|x| +|FriBidi/1.0.12-GCCcore-12.2.0|x|x|x|x|x|x| +|FriBidi/1.0.12-GCCcore-11.3.0|x|x|x|x|x|x| +|FriBidi/1.0.10-GCCcore-11.2.0|x|x|x|x|x|x| +|FriBidi/1.0.10-GCCcore-10.3.0|x|x|x|x|x|x| +|FriBidi/1.0.10-GCCcore-10.2.0|x|x|x|x|x|x| +|FriBidi/1.0.9-GCCcore-9.3.0|-|x|x|-|x|x| +|FriBidi/1.0.5-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FuSeq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FuSeq.md index cb9dba43b97b..a899577bc99c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FuSeq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FuSeq.md @@ -6,6 +6,10 @@ hide: FuSeq ===== + +FuSeq is a novel method to discover fusion genes from paired-end RNA sequencing data. + +https://github.com/nghiavtr/FuSeq # Available modules @@ -17,8 +21,8 @@ To start using FuSeq, load one of these modules using a `module load` command li module load FuSeq/1.1.2-gompi-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FuSeq/1.1.2-gompi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FuSeq/1.1.2-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/FusionCatcher.md b/mkdocs/docs/HPC/only/gent/available_software/detail/FusionCatcher.md index 611c20953a53..170c8cb10f9a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/FusionCatcher.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/FusionCatcher.md @@ -6,6 +6,10 @@ hide: FusionCatcher ============= + +FusionCatcher searches for novel/known somatic fusion genes, translocations,and chimeras in RNA-seq data (paired-end or single-end reads from Illumina NGSplatforms like Solexa/HiSeq/NextSeq/MiSeq/MiniSeq) from diseased samples. + +https://github.com/ndaniel/fusioncatcher # Available modules @@ -17,9 +21,9 @@ To start using FusionCatcher, load one of these modules using a `module load` co module load FusionCatcher/1.30-foss-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|FusionCatcher/1.30-foss-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| -|FusionCatcher/1.20-foss-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|FusionCatcher/1.30-foss-2019b-Python-2.7.16|-|x|x|-|x|x| +|FusionCatcher/1.20-foss-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GAPPadder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GAPPadder.md index fca78c223565..f3fe598a9c0d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GAPPadder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GAPPadder.md @@ -6,6 +6,10 @@ hide: GAPPadder ========= + +GAPPadder is tool for closing gaps on draft genomes with short sequencing data + +https://github.com/simoncchu/GAPPadder # Available modules @@ -17,8 +21,8 @@ To start using GAPPadder, load one of these modules using a `module load` comman module load GAPPadder/20170601-foss-2021b-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GAPPadder/20170601-foss-2021b-Python-2.7.18|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GAPPadder/20170601-foss-2021b-Python-2.7.18|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GATB-Core.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GATB-Core.md index 3a68a1dc1e4d..7ec136f8584d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GATB-Core.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GATB-Core.md @@ -6,6 +6,10 @@ hide: GATB-Core ========= + +GATB-Core is a high-performance and low memory footprint C++ library that provides a set of highly efficient algorithms to analyse NGS data sets + +https://gatb.inria.fr/software/gatb-core # Available modules @@ -17,8 +21,8 @@ To start using GATB-Core, load one of these modules using a `module load` comman module load GATB-Core/1.4.2-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GATB-Core/1.4.2-gompi-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GATB-Core/1.4.2-gompi-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GATE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GATE.md index b35666c0cd07..91c668110097 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GATE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GATE.md @@ -6,6 +6,10 @@ hide: GATE ==== + +GATE is an advanced opensource software developed by the international OpenGATE collaboration and dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography + +http://www.opengatecollaboration.org/ # Available modules @@ -17,11 +21,11 @@ To start using GATE, load one of these modules using a `module load` command lik module load GATE/9.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GATE/9.2-foss-2022a|x|x|x|x|x|x|x|x| -|GATE/9.2-foss-2021b|x|x|x|x|x|x|x|x| -|GATE/9.1-foss-2021b|x|x|x|x|x|x|x|x| -|GATE/9.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GATE/9.2-foss-2022a|x|x|x|x|x|x| +|GATE/9.2-foss-2021b|x|x|x|x|x|x| +|GATE/9.1-foss-2021b|x|x|x|x|x|x| +|GATE/9.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GATK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GATK.md index 3d8a007a97df..c1b7d77b4c28 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GATK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GATK.md @@ -6,6 +6,10 @@ hide: GATK ==== + +The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. + +https://www.broadinstitute.org/gatk/ # Available modules @@ -14,13 +18,14 @@ The overview below shows which GATK installations are available per HPC-UGent Ti To start using GATK, load one of these modules using a `module load` command like: ```shell -module load GATK/4.3.0.0-GCCcore-11.3.0-Java-11 +module load GATK/4.4.0.0-GCCcore-12.3.0-Java-17 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GATK/4.3.0.0-GCCcore-11.3.0-Java-11|x|x|x|x|x|x|x|x| -|GATK/4.2.0.0-GCCcore-10.2.0-Java-11|-|x|x|x|x|x|x|x| -|GATK/4.1.8.1-GCCcore-9.3.0-Java-1.8|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GATK/4.4.0.0-GCCcore-12.3.0-Java-17|x|x|x|x|x|x| +|GATK/4.3.0.0-GCCcore-11.3.0-Java-11|x|x|x|x|x|x| +|GATK/4.2.0.0-GCCcore-10.2.0-Java-11|-|x|x|x|x|x| +|GATK/4.1.8.1-GCCcore-9.3.0-Java-1.8|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GBprocesS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GBprocesS.md index b108876d6fcb..9d81a76554a8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GBprocesS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GBprocesS.md @@ -6,6 +6,10 @@ hide: GBprocesS ========= + +GBprocesS allows for the extraction of genomic inserts from NGSdata for GBS experiments. Preprocessing is performed in different stages thatare part of a linear pipeline where the steps are performed in order. GBprocesSprovides a flexible way to adjust the functionality to your needs, as theoperations required and the execution order vary depending on the GBS protocolused. + +https://gbprocess.readthedocs.io/ # Available modules @@ -17,9 +21,9 @@ To start using GBprocesS, load one of these modules using a `module load` comman module load GBprocesS/4.0.0.post1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GBprocesS/4.0.0.post1-foss-2022a|x|x|x|x|x|x|x|x| -|GBprocesS/2.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GBprocesS/4.0.0.post1-foss-2022a|x|x|x|x|x|x| +|GBprocesS/2.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GCC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GCC.md index 74ba137c345e..abf9bebe58a6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GCC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GCC.md @@ -6,6 +6,10 @@ hide: GCC === + +The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). + +https://gcc.gnu.org/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which GCC installations are available per HPC-UGent Tie To start using GCC, load one of these modules using a `module load` command like: ```shell -module load GCC/12.3.0 +module load GCC/13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GCC/12.3.0|x|x|x|x|x|x|x|x| -|GCC/12.2.0|x|x|x|x|x|x|x|x| -|GCC/11.3.0|x|x|x|x|x|x|x|x| -|GCC/11.2.0|x|x|x|x|x|x|x|x| -|GCC/10.3.0|x|x|x|x|x|x|x|x| -|GCC/10.2.0|x|x|x|x|x|x|x|x| -|GCC/9.3.0|-|x|x|x|x|x|x|x| -|GCC/8.3.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GCC/13.2.0|x|x|x|x|x|x| +|GCC/12.3.0|x|x|x|x|x|x| +|GCC/12.2.0|x|x|x|x|x|x| +|GCC/11.3.0|x|x|x|x|x|x| +|GCC/11.2.0|x|x|x|x|x|x| +|GCC/10.3.0|x|x|x|x|x|x| +|GCC/10.2.0|x|x|x|x|x|x| +|GCC/9.3.0|-|x|x|x|x|x| +|GCC/8.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GCCcore.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GCCcore.md index 3578c45efbc0..6d21d15630d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GCCcore.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GCCcore.md @@ -6,6 +6,10 @@ hide: GCCcore ======= + +The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). + +https://gcc.gnu.org/ # Available modules @@ -14,19 +18,20 @@ The overview below shows which GCCcore installations are available per HPC-UGent To start using GCCcore, load one of these modules using a `module load` command like: ```shell -module load GCCcore/12.3.0 +module load GCCcore/13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GCCcore/12.3.0|x|x|x|x|x|x|x|x| -|GCCcore/12.2.0|x|x|x|x|x|x|x|x| -|GCCcore/11.3.0|x|x|x|x|x|x|x|x| -|GCCcore/11.2.0|x|x|x|x|x|x|x|x| -|GCCcore/10.3.0|x|x|x|x|x|x|x|x| -|GCCcore/10.2.0|x|x|x|x|x|x|x|x| -|GCCcore/9.3.0|x|x|x|x|x|x|x|x| -|GCCcore/8.3.0|x|x|x|x|x|x|x|x| -|GCCcore/8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GCCcore/13.2.0|x|x|x|x|x|x| +|GCCcore/12.3.0|x|x|x|x|x|x| +|GCCcore/12.2.0|x|x|x|x|x|x| +|GCCcore/11.3.0|x|x|x|x|x|x| +|GCCcore/11.2.0|x|x|x|x|x|x| +|GCCcore/10.3.0|x|x|x|x|x|x| +|GCCcore/10.2.0|x|x|x|x|x|x| +|GCCcore/9.3.0|x|x|x|x|x|x| +|GCCcore/8.3.0|x|x|x|x|x|x| +|GCCcore/8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GConf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GConf.md index 443c71ca2969..fcc6ab0a96f1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GConf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GConf.md @@ -6,6 +6,10 @@ hide: GConf ===== + +GConf is a system for storing application preferences. It is intended for user preferences; not configuration of something like Apache, or arbitrary data storage. + +https://gitlab.gnome.org/iainl/gconf # Available modules @@ -17,9 +21,9 @@ To start using GConf, load one of these modules using a `module load` command li module load GConf/3.2.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GConf/3.2.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|GConf/3.2.6-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GConf/3.2.6-GCCcore-11.2.0|x|x|x|x|x|x| +|GConf/3.2.6-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GDAL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GDAL.md index eae6084e7fc1..88a76d1b4ec3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GDAL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GDAL.md @@ -6,6 +6,10 @@ hide: GDAL ==== + +GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing. + +https://www.gdal.org # Available modules @@ -14,20 +18,21 @@ The overview below shows which GDAL installations are available per HPC-UGent Ti To start using GDAL, load one of these modules using a `module load` command like: ```shell -module load GDAL/3.6.2-foss-2022b +module load GDAL/3.7.1-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GDAL/3.6.2-foss-2022b|x|x|x|x|x|x|x|x| -|GDAL/3.5.0-foss-2022a|x|x|x|x|x|x|x|x| -|GDAL/3.3.2-foss-2021b|x|x|x|x|x|x|x|x| -|GDAL/3.3.0-foss-2021a|-|x|x|x|x|x|x|x| -|GDAL/3.2.1-intel-2020b|-|x|x|-|x|x|x|x| -|GDAL/3.2.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|GDAL/3.2.1-foss-2020b|-|x|x|x|x|x|x|x| -|GDAL/3.0.4-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|GDAL/3.0.2-intel-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| -|GDAL/3.0.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GDAL/3.7.1-foss-2023a|x|x|x|x|x|x| +|GDAL/3.6.2-foss-2022b|x|x|x|x|x|x| +|GDAL/3.5.0-foss-2022a|x|x|x|x|x|x| +|GDAL/3.3.2-foss-2021b|x|x|x|x|x|x| +|GDAL/3.3.0-foss-2021a|x|x|x|x|x|x| +|GDAL/3.2.1-intel-2020b|-|x|x|-|x|x| +|GDAL/3.2.1-fosscuda-2020b|-|-|-|-|x|-| +|GDAL/3.2.1-foss-2020b|-|x|x|x|x|x| +|GDAL/3.0.4-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|GDAL/3.0.2-intel-2019b-Python-3.7.4|-|-|x|-|x|x| +|GDAL/3.0.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GDB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GDB.md index 4fcd3a32a2dc..4e20452c8380 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GDB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GDB.md @@ -6,6 +6,10 @@ hide: GDB === + +The GNU Project Debugger + +https://www.gnu.org/software/gdb/gdb.html # Available modules @@ -17,8 +21,8 @@ To start using GDB, load one of these modules using a `module load` command like module load GDB/9.1-GCCcore-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GDB/9.1-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GDB/9.1-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GDCM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GDCM.md index c72d1aafff71..12adde83a20d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GDCM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GDCM.md @@ -6,6 +6,10 @@ hide: GDCM ==== + +Grassroots DICOM: Cross-platform DICOM implementation + +https://sourceforge.net/projects/gdcm # Available modules @@ -17,8 +21,8 @@ To start using GDCM, load one of these modules using a `module load` command lik module load GDCM/3.0.21-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GDCM/3.0.21-GCCcore-12.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GDCM/3.0.21-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GDGraph.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GDGraph.md index a37d2fa78af0..4cff40db377a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GDGraph.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GDGraph.md @@ -6,6 +6,10 @@ hide: GDGraph ======= + +GDGraph is a Perl package to generate charts + +https://metacpan.org/release/GDGraph # Available modules @@ -17,8 +21,15 @@ To start using GDGraph, load one of these modules using a `module load` command module load GDGraph/1.56-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GDGraph/1.56-GCCcore-11.3.0|x|x|x|x|x|x| + + +### GDGraph/1.56-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GDGraph/1.56-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +ExtUtils::PkgConfig-1.16, GD-2.76, GD::Graph-1.56, GD::Text-0.86 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GDRCopy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GDRCopy.md index e5b354afcf56..92596598f2b3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GDRCopy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GDRCopy.md @@ -6,6 +6,10 @@ hide: GDRCopy ======= + +A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology. + +https://github.com/NVIDIA/gdrcopy # Available modules @@ -14,15 +18,16 @@ The overview below shows which GDRCopy installations are available per HPC-UGent To start using GDRCopy, load one of these modules using a `module load` command like: ```shell -module load GDRCopy/2.3-GCCcore-11.3.0 +module load GDRCopy/2.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GDRCopy/2.3-GCCcore-11.3.0|x|x|x|-|x|x|x|x| -|GDRCopy/2.3-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|GDRCopy/2.2-GCCcore-10.3.0|x|-|-|-|x|-|-|-| -|GDRCopy/2.1-GCCcore-10.2.0-CUDA-11.2.1|x|-|x|-|x|-|-|-| -|GDRCopy/2.1-GCCcore-10.2.0-CUDA-11.1.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GDRCopy/2.3.1-GCCcore-12.3.0|x|-|x|-|x|-| +|GDRCopy/2.3-GCCcore-11.3.0|x|x|x|-|x|x| +|GDRCopy/2.3-GCCcore-11.2.0|x|x|x|-|x|x| +|GDRCopy/2.2-GCCcore-10.3.0|x|-|-|-|x|-| +|GDRCopy/2.1-GCCcore-10.2.0-CUDA-11.2.1|x|-|x|-|x|-| +|GDRCopy/2.1-GCCcore-10.2.0-CUDA-11.1.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GEGL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GEGL.md index 22a4f6f655b1..6afecb67d832 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GEGL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GEGL.md @@ -6,6 +6,10 @@ hide: GEGL ==== + +GEGL (Generic Graphics Library) is a data flow based image processing framework, providing floating point processing and non-destructive image processing capabilities to GNU Image Manipulation Program (GIMP) and other projects. + +https://www.gegl.org # Available modules @@ -17,8 +21,8 @@ To start using GEGL, load one of these modules using a `module load` command lik module load GEGL/0.4.30-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GEGL/0.4.30-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GEGL/0.4.30-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GEOS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GEOS.md index f95f9eb8359e..b765e64818db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GEOS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GEOS.md @@ -6,6 +6,10 @@ hide: GEOS ==== + +GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS) + +https://trac.osgeo.org/geos # Available modules @@ -14,19 +18,20 @@ The overview below shows which GEOS installations are available per HPC-UGent Ti To start using GEOS, load one of these modules using a `module load` command like: ```shell -module load GEOS/3.11.1-GCC-12.2.0 +module load GEOS/3.12.0-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GEOS/3.11.1-GCC-12.2.0|x|x|x|x|x|x|x|x| -|GEOS/3.10.3-GCC-11.3.0|x|x|x|x|x|x|x|x| -|GEOS/3.9.1-iccifort-2020.4.304|-|x|x|x|x|x|x|x| -|GEOS/3.9.1-GCC-11.2.0|x|x|x|x|x|x|x|x| -|GEOS/3.9.1-GCC-10.3.0|x|x|x|x|x|x|x|x| -|GEOS/3.9.1-GCC-10.2.0|-|x|x|x|x|x|x|x| -|GEOS/3.8.1-GCC-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| -|GEOS/3.8.0-iccifort-2019.5.281-Python-3.7.4|-|x|x|-|x|x|-|x| -|GEOS/3.8.0-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GEOS/3.12.0-GCC-12.3.0|x|x|x|x|x|x| +|GEOS/3.11.1-GCC-12.2.0|x|x|x|x|x|x| +|GEOS/3.10.3-GCC-11.3.0|x|x|x|x|x|x| +|GEOS/3.9.1-iccifort-2020.4.304|-|x|x|x|x|x| +|GEOS/3.9.1-GCC-11.2.0|x|x|x|x|x|x| +|GEOS/3.9.1-GCC-10.3.0|x|x|x|x|x|x| +|GEOS/3.9.1-GCC-10.2.0|-|x|x|x|x|x| +|GEOS/3.8.1-GCC-9.3.0-Python-3.8.2|-|x|x|-|x|x| +|GEOS/3.8.0-iccifort-2019.5.281-Python-3.7.4|-|x|x|-|x|x| +|GEOS/3.8.0-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GFF3-toolkit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GFF3-toolkit.md new file mode 100644 index 000000000000..3b4b63c465e2 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GFF3-toolkit.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +GFF3-toolkit +============ + + +Python programs for processing GFF3 files + +https://gff3toolkit.readthedocs.io +# Available modules + + +The overview below shows which GFF3-toolkit installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using GFF3-toolkit, load one of these modules using a `module load` command like: + +```shell +module load GFF3-toolkit/2.1.0-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GFF3-toolkit/2.1.0-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GIMP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GIMP.md index d7024b3a5bcf..176370be8164 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GIMP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GIMP.md @@ -6,6 +6,10 @@ hide: GIMP ==== + +GIMP is a cross-platform image editor available for GNU/Linux, OS X, Windows and more operating systems. + +https://www.gimp.org # Available modules @@ -17,8 +21,8 @@ To start using GIMP, load one of these modules using a `module load` command lik module load GIMP/2.10.24-GCC-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GIMP/2.10.24-GCC-10.3.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GIMP/2.10.24-GCC-10.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GL2PS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GL2PS.md index ec00ab621775..fef265bbe179 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GL2PS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GL2PS.md @@ -6,6 +6,10 @@ hide: GL2PS ===== + +GL2PS: an OpenGL to PostScript printing library + +https://www.geuz.org/gl2ps/ # Available modules @@ -17,10 +21,10 @@ To start using GL2PS, load one of these modules using a `module load` command li module load GL2PS/1.4.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GL2PS/1.4.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|GL2PS/1.4.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|GL2PS/1.4.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GL2PS/1.4.2-GCCcore-11.3.0|x|x|x|x|x|x| +|GL2PS/1.4.2-GCCcore-11.2.0|x|x|x|x|x|x| +|GL2PS/1.4.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLFW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLFW.md index 7cd5c9f6c2f6..0d4b5a2d0c05 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLFW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLFW.md @@ -6,6 +6,10 @@ hide: GLFW ==== + +GLFW is an Open Source, multi-platform library for OpenGL,OpenGL ES and Vulkan development on the desktop + +https://www.glfw.org # Available modules @@ -17,9 +21,9 @@ To start using GLFW, load one of these modules using a `module load` command lik module load GLFW/3.3.8-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GLFW/3.3.8-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|GLFW/3.3.4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GLFW/3.3.8-GCCcore-12.3.0|x|x|x|x|x|x| +|GLFW/3.3.4-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLIMPSE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLIMPSE.md index 2da901a8da94..ff1af709aa02 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLIMPSE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLIMPSE.md @@ -6,6 +6,10 @@ hide: GLIMPSE ======= + +GLIMPSE2 is a set of tools for phasing and imputation for low-coverage sequencing datasets + +https://github.com/odelaneau/GLIMPSE # Available modules @@ -14,11 +18,12 @@ The overview below shows which GLIMPSE installations are available per HPC-UGent To start using GLIMPSE, load one of these modules using a `module load` command like: ```shell -module load GLIMPSE/2.0.0-GCC-11.3.0 +module load GLIMPSE/2.0.0-GCC-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GLIMPSE/2.0.0-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GLIMPSE/2.0.0-GCC-12.2.0|x|x|x|x|x|x| +|GLIMPSE/2.0.0-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLM.md index dedfb6efebed..380c6b948385 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLM.md @@ -6,6 +6,10 @@ hide: GLM === + +OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications. + +https://github.com/g-truc/glm # Available modules @@ -17,9 +21,9 @@ To start using GLM, load one of these modules using a `module load` command like module load GLM/0.9.9.8-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GLM/0.9.9.8-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|GLM/0.9.9.8-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GLM/0.9.9.8-GCCcore-10.2.0|x|x|x|x|x|x| +|GLM/0.9.9.8-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLPK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLPK.md index bd5736ff3e7e..3f771dec2dd7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLPK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLPK.md @@ -6,6 +6,10 @@ hide: GLPK ==== + +The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library. + +https://www.gnu.org/software/glpk/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which GLPK installations are available per HPC-UGent Ti To start using GLPK, load one of these modules using a `module load` command like: ```shell -module load GLPK/5.0-GCCcore-12.2.0 +module load GLPK/5.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GLPK/5.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|GLPK/5.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|GLPK/5.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|GLPK/5.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|GLPK/4.65-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|GLPK/4.65-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|GLPK/4.65-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GLPK/5.0-GCCcore-12.3.0|x|x|x|x|x|x| +|GLPK/5.0-GCCcore-12.2.0|x|x|x|x|x|x| +|GLPK/5.0-GCCcore-11.3.0|x|x|x|x|x|x| +|GLPK/5.0-GCCcore-11.2.0|x|x|x|x|x|x| +|GLPK/5.0-GCCcore-10.3.0|x|x|x|x|x|x| +|GLPK/4.65-GCCcore-10.2.0|x|x|x|x|x|x| +|GLPK/4.65-GCCcore-9.3.0|-|x|x|-|x|x| +|GLPK/4.65-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLib.md index bf3cf7597928..ec28892bf5fb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLib.md @@ -6,6 +6,10 @@ hide: GLib ==== + +GLib is one of the base libraries of the GTK+ project + +https://www.gtk.org/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which GLib installations are available per HPC-UGent Ti To start using GLib, load one of these modules using a `module load` command like: ```shell -module load GLib/2.75.0-GCCcore-12.2.0 +module load GLib/2.77.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GLib/2.75.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|GLib/2.72.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|GLib/2.69.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|GLib/2.68.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|GLib/2.66.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|GLib/2.64.1-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|GLib/2.62.0-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GLib/2.77.1-GCCcore-12.3.0|x|x|x|x|x|x| +|GLib/2.75.0-GCCcore-12.2.0|x|x|x|x|x|x| +|GLib/2.72.1-GCCcore-11.3.0|x|x|x|x|x|x| +|GLib/2.69.1-GCCcore-11.2.0|x|x|x|x|x|x| +|GLib/2.68.2-GCCcore-10.3.0|x|x|x|x|x|x| +|GLib/2.66.1-GCCcore-10.2.0|x|x|x|x|x|x| +|GLib/2.64.1-GCCcore-9.3.0|x|x|x|x|x|x| +|GLib/2.62.0-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GLibmm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GLibmm.md index 20e14a7409dd..57e9e0f16ebc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GLibmm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GLibmm.md @@ -6,6 +6,10 @@ hide: GLibmm ====== + +C++ bindings for Glib + +https://www.gtk.org/ # Available modules @@ -17,9 +21,9 @@ To start using GLibmm, load one of these modules using a `module load` command l module load GLibmm/2.66.4-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GLibmm/2.66.4-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|GLibmm/2.49.7-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GLibmm/2.66.4-GCCcore-10.3.0|-|x|x|-|x|x| +|GLibmm/2.49.7-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GMAP-GSNAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GMAP-GSNAP.md index d9a4a5ce9c0f..9d7f3d70c4af 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GMAP-GSNAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GMAP-GSNAP.md @@ -6,6 +6,10 @@ hide: GMAP-GSNAP ========== + +GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences GSNAP: Genomic Short-read Nucleotide Alignment Program + +http://research-pub.gene.com/gmap/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which GMAP-GSNAP installations are available per HPC-UG To start using GMAP-GSNAP, load one of these modules using a `module load` command like: ```shell -module load GMAP-GSNAP/2023-02-17-GCC-11.3.0 +module load GMAP-GSNAP/2023-04-20-GCC-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GMAP-GSNAP/2023-02-17-GCC-11.3.0|x|x|x|x|x|x|x|x| -|GMAP-GSNAP/2019-09-12-GCC-8.3.0|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GMAP-GSNAP/2023-04-20-GCC-12.2.0|x|x|x|x|x|x| +|GMAP-GSNAP/2023-02-17-GCC-11.3.0|x|x|x|x|x|x| +|GMAP-GSNAP/2019-09-12-GCC-8.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GMP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GMP.md index 9b80bb79c674..9394495d0526 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GMP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GMP.md @@ -6,6 +6,10 @@ hide: GMP === + +GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers. + +https://gmplib.org/ # Available modules @@ -17,16 +21,16 @@ To start using GMP, load one of these modules using a `module load` command like module load GMP/6.2.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GMP/6.2.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|GMP/6.2.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|GMP/6.2.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|GMP/6.2.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|GMP/6.2.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|GMP/6.2.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|GMP/6.2.0-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|GMP/6.1.2-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|GMP/6.1.2-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GMP/6.2.1-GCCcore-12.3.0|x|x|x|x|x|x| +|GMP/6.2.1-GCCcore-12.2.0|x|x|x|x|x|x| +|GMP/6.2.1-GCCcore-11.3.0|x|x|x|x|x|x| +|GMP/6.2.1-GCCcore-11.2.0|x|x|x|x|x|x| +|GMP/6.2.1-GCCcore-10.3.0|x|x|x|x|x|x| +|GMP/6.2.0-GCCcore-10.2.0|x|x|x|x|x|x| +|GMP/6.2.0-GCCcore-9.3.0|x|x|x|x|x|x| +|GMP/6.1.2-GCCcore-8.3.0|x|x|x|x|x|x| +|GMP/6.1.2-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GOATOOLS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GOATOOLS.md index b2265a90b9c0..b8469d9b58aa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GOATOOLS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GOATOOLS.md @@ -6,6 +6,10 @@ hide: GOATOOLS ======== + +A Python library for Gene Ontology analyses + +https://github.com/tanghaibao/goatools # Available modules @@ -17,10 +21,10 @@ To start using GOATOOLS, load one of these modules using a `module load` command module load GOATOOLS/1.3.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GOATOOLS/1.3.1-foss-2022a|x|x|x|x|x|x|x|x| -|GOATOOLS/1.3.1-foss-2021b|x|x|x|x|x|x|x|x| -|GOATOOLS/1.1.6-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GOATOOLS/1.3.1-foss-2022a|x|x|x|x|x|x| +|GOATOOLS/1.3.1-foss-2021b|x|x|x|x|x|x| +|GOATOOLS/1.1.6-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GObject-Introspection.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GObject-Introspection.md index abc3dd4712ad..45ba6268f17e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GObject-Introspection.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GObject-Introspection.md @@ -6,6 +6,10 @@ hide: GObject-Introspection ===================== + +GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library. + +https://gi.readthedocs.io/en/latest/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which GObject-Introspection installations are available To start using GObject-Introspection, load one of these modules using a `module load` command like: ```shell -module load GObject-Introspection/1.74.0-GCCcore-12.2.0 +module load GObject-Introspection/1.76.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GObject-Introspection/1.74.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|GObject-Introspection/1.72.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|GObject-Introspection/1.68.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|GObject-Introspection/1.68.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|GObject-Introspection/1.66.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|GObject-Introspection/1.64.0-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| -|GObject-Introspection/1.63.1-GCCcore-8.3.0-Python-3.7.4|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GObject-Introspection/1.76.1-GCCcore-12.3.0|x|x|x|x|x|x| +|GObject-Introspection/1.74.0-GCCcore-12.2.0|x|x|x|x|x|x| +|GObject-Introspection/1.72.0-GCCcore-11.3.0|x|x|x|x|x|x| +|GObject-Introspection/1.68.0-GCCcore-11.2.0|x|x|x|x|x|x| +|GObject-Introspection/1.68.0-GCCcore-10.3.0|x|x|x|x|x|x| +|GObject-Introspection/1.66.1-GCCcore-10.2.0|x|x|x|x|x|x| +|GObject-Introspection/1.64.0-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| +|GObject-Introspection/1.63.1-GCCcore-8.3.0-Python-3.7.4|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW-setups.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW-setups.md index 60df67f643e2..b83c291af6b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW-setups.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW-setups.md @@ -6,6 +6,10 @@ hide: GPAW-setups =========== + +PAW setup for the GPAW Density Functional Theory package. Users can install setups manually using 'gpaw install-data' or use setups from this package. The versions of GPAW and GPAW-setups can be intermixed. + +https://wiki.fysik.dtu.dk/gpaw/ # Available modules @@ -17,8 +21,8 @@ To start using GPAW-setups, load one of these modules using a `module load` comm module load GPAW-setups/0.9.20000 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GPAW-setups/0.9.20000|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GPAW-setups/0.9.20000|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW.md index b35abb2574f6..07c14a255cb8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GPAW.md @@ -6,6 +6,10 @@ hide: GPAW ==== + +GPAW is a density-functional theory (DFT) Python code based on the projector-augmented wave (PAW) method and the atomic simulation environment (ASE). It uses real-space uniform grids and multigrid methods or atom-centered basis-functions. + +https://wiki.fysik.dtu.dk/gpaw/ # Available modules @@ -17,12 +21,12 @@ To start using GPAW, load one of these modules using a `module load` command lik module load GPAW/22.8.0-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GPAW/22.8.0-intel-2022a|x|x|x|x|x|x|x|x| -|GPAW/22.8.0-intel-2021b|x|x|x|-|x|x|x|x| -|GPAW/22.8.0-foss-2021b|x|x|x|-|x|x|x|x| -|GPAW/20.1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|GPAW/20.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GPAW/22.8.0-intel-2022a|x|x|x|x|x|x| +|GPAW/22.8.0-intel-2021b|x|x|x|-|x|x| +|GPAW/22.8.0-foss-2021b|x|x|x|-|x|x| +|GPAW/20.1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|GPAW/20.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GPy.md index 82187b884396..d50dd5b5c83a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GPy.md @@ -6,6 +6,10 @@ hide: GPy === + +GPy is a Gaussian Process (GP) framework written in Python + +https://sheffieldml.github.io/GPy # Available modules @@ -17,8 +21,15 @@ To start using GPy, load one of these modules using a `module load` command like module load GPy/1.10.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GPy/1.10.0-foss-2021b|x|x|x|-|x|x| + + +### GPy/1.10.0-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GPy/1.10.0-foss-2021b|x|x|x|-|x|x|x|x| +GPy-1.10.0, paramz-0.9.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GPyOpt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GPyOpt.md index b3b3c4e3543f..ad915e69b223 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GPyOpt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GPyOpt.md @@ -6,6 +6,10 @@ hide: GPyOpt ====== + +GPyOpt is a Python open-source library for Bayesian Optimization + +https://sheffieldml.github.io/GPyOpt # Available modules @@ -17,8 +21,15 @@ To start using GPyOpt, load one of these modules using a `module load` command l module load GPyOpt/1.2.6-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GPyOpt/1.2.6-intel-2020b|-|x|x|-|x|x| + + +### GPyOpt/1.2.6-intel-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GPyOpt/1.2.6-intel-2020b|-|x|x|-|x|x|x|x| +GPy-1.9.9, GPyOpt-1.2.6, paramz-0.9.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GPyTorch.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GPyTorch.md index b4522c7a8e73..254ddfca70cb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GPyTorch.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GPyTorch.md @@ -6,6 +6,10 @@ hide: GPyTorch ======== + +GPyTorch is a Gaussian process library implemented using PyTorch. + +https://gpytorch.ai # Available modules @@ -17,9 +21,9 @@ To start using GPyTorch, load one of these modules using a `module load` command module load GPyTorch/1.6.0-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GPyTorch/1.6.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|GPyTorch/1.3.0-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GPyTorch/1.6.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|GPyTorch/1.3.0-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GRASP-suite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GRASP-suite.md new file mode 100644 index 000000000000..5314db01b3a9 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GRASP-suite.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +GRASP-suite +=========== + + +GRASP-suite is a collection of tools and tutorials to perform and analyse ancestral sequence reconstruction. + +https://github.com/bodenlab/GRASP-suite/ +# Available modules + + +The overview below shows which GRASP-suite installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using GRASP-suite, load one of these modules using a `module load` command like: + +```shell +module load GRASP-suite/2023-05-09-Java-17 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GRASP-suite/2023-05-09-Java-17|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GRASS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GRASS.md index 160417d70bf7..68030e88a375 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GRASS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GRASS.md @@ -6,6 +6,10 @@ hide: GRASS ===== + +The Geographic Resources Analysis Support System - used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization + +https://grass.osgeo.org # Available modules @@ -17,8 +21,8 @@ To start using GRASS, load one of these modules using a `module load` command li module load GRASS/8.2.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GRASS/8.2.0-foss-2021b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GRASS/8.2.0-foss-2021b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md index 5d6d5dbd1619..de0e6d4337e2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GROMACS.md @@ -6,6 +6,10 @@ hide: GROMACS ======= + +GROMACS is a versatile package to perform molecular dynamics, i.e. simulate theNewtonian equations of motion for systems with hundreds to millions ofparticles.This is a CPU only build, containing both MPI and threadMPI buildsfor both single and double precision.It also contains the gmxapi extension for the single precision MPI build. + +https://www.gromacs.org # Available modules @@ -17,14 +21,39 @@ To start using GROMACS, load one of these modules using a `module load` command module load GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2|x|-|-|-|x|-|-|-| -|GROMACS/2021.3-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|GROMACS/2021.2-fosscuda-2020b|x|-|-|-|x|-|-|-| -|GROMACS/2021-foss-2020b|-|x|x|x|x|x|x|x| -|GROMACS/2020-foss-2019b|-|x|x|-|x|-|-|-| -|GROMACS/2019.4-foss-2019b|-|x|x|-|x|-|-|-| -|GROMACS/2019.3-foss-2019b|-|x|x|-|x|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2|x|-|-|-|x|-| +|GROMACS/2021.3-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|GROMACS/2021.2-fosscuda-2020b|x|-|-|-|x|-| +|GROMACS/2021-foss-2020b|-|x|x|x|x|x| +|GROMACS/2020-foss-2019b|-|x|x|-|x|-| +|GROMACS/2019.4-foss-2019b|-|x|x|-|x|-| +|GROMACS/2019.3-foss-2019b|-|x|x|-|x|-| + + +### GROMACS/2021.3-foss-2021a-CUDA-11.3.1-PLUMED-2.7.2 + +This is a list of extensions included in the module: + +gmxapi-0.2.0 + +### GROMACS/2021.3-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +gmxapi-0.2.0 + +### GROMACS/2021.2-fosscuda-2020b + +This is a list of extensions included in the module: + +gmxapi-0.2.0 + +### GROMACS/2021-foss-2020b + +This is a list of extensions included in the module: + +gmxapi-0.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GSL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GSL.md index 188ddc2d1fe2..462375bc70ac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GSL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GSL.md @@ -6,6 +6,10 @@ hide: GSL === + +The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. + +https://www.gnu.org/software/gsl/ # Available modules @@ -17,18 +21,19 @@ To start using GSL, load one of these modules using a `module load` command like module load GSL/2.7-intel-compilers-2021.4.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GSL/2.7-intel-compilers-2021.4.0|x|x|x|-|x|x|x|x| -|GSL/2.7-GCC-12.2.0|x|x|x|x|x|x|x|x| -|GSL/2.7-GCC-11.3.0|x|x|x|x|x|x|x|x| -|GSL/2.7-GCC-11.2.0|x|x|x|x|x|x|x|x| -|GSL/2.7-GCC-10.3.0|x|x|x|x|x|x|x|x| -|GSL/2.6-iccifort-2020.4.304|-|x|x|x|x|x|x|x| -|GSL/2.6-iccifort-2020.1.217|-|x|x|-|x|x|x|x| -|GSL/2.6-iccifort-2019.5.281|-|x|x|-|x|x|x|x| -|GSL/2.6-GCC-10.2.0|x|x|x|x|x|x|x|x| -|GSL/2.6-GCC-9.3.0|-|x|x|x|x|x|x|x| -|GSL/2.6-GCC-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GSL/2.7-intel-compilers-2021.4.0|x|x|x|-|x|x| +|GSL/2.7-GCC-12.3.0|x|x|x|x|x|x| +|GSL/2.7-GCC-12.2.0|x|x|x|x|x|x| +|GSL/2.7-GCC-11.3.0|x|x|x|x|x|x| +|GSL/2.7-GCC-11.2.0|x|x|x|x|x|x| +|GSL/2.7-GCC-10.3.0|x|x|x|x|x|x| +|GSL/2.6-iccifort-2020.4.304|-|x|x|x|x|x| +|GSL/2.6-iccifort-2020.1.217|-|x|x|-|x|x| +|GSL/2.6-iccifort-2019.5.281|-|x|x|-|x|x| +|GSL/2.6-GCC-10.2.0|x|x|x|x|x|x| +|GSL/2.6-GCC-9.3.0|-|x|x|x|x|x| +|GSL/2.6-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-bad.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-bad.md index 3cb04ed51f79..b648c8f81c3a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-bad.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-bad.md @@ -6,6 +6,10 @@ hide: GST-plugins-bad =============== + +GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. + +https://gstreamer.freedesktop.org/ # Available modules @@ -17,8 +21,8 @@ To start using GST-plugins-bad, load one of these modules using a `module load` module load GST-plugins-bad/1.20.2-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GST-plugins-bad/1.20.2-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GST-plugins-bad/1.20.2-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-base.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-base.md index 8296e98135fa..b8651dad63cb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-base.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GST-plugins-base.md @@ -6,6 +6,10 @@ hide: GST-plugins-base ================ + +GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. + +https://gstreamer.freedesktop.org/ # Available modules @@ -17,10 +21,10 @@ To start using GST-plugins-base, load one of these modules using a `module load` module load GST-plugins-base/1.20.2-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GST-plugins-base/1.20.2-GCC-11.3.0|x|x|x|x|x|x|x|x| -|GST-plugins-base/1.18.5-GCC-11.2.0|x|x|x|x|x|x|x|x| -|GST-plugins-base/1.18.4-GCC-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GST-plugins-base/1.20.2-GCC-11.3.0|x|x|x|x|x|x| +|GST-plugins-base/1.18.5-GCC-11.2.0|x|x|x|x|x|x| +|GST-plugins-base/1.18.4-GCC-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GStreamer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GStreamer.md index 956e3f571a49..05afd9658496 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GStreamer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GStreamer.md @@ -6,6 +6,10 @@ hide: GStreamer ========= + +GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing. + +https://gstreamer.freedesktop.org/ # Available modules @@ -17,10 +21,10 @@ To start using GStreamer, load one of these modules using a `module load` comman module load GStreamer/1.20.2-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GStreamer/1.20.2-GCC-11.3.0|x|x|x|x|x|x|x|x| -|GStreamer/1.18.5-GCC-11.2.0|x|x|x|x|x|x|x|x| -|GStreamer/1.18.4-GCC-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GStreamer/1.20.2-GCC-11.3.0|x|x|x|x|x|x| +|GStreamer/1.18.5-GCC-11.2.0|x|x|x|x|x|x| +|GStreamer/1.18.4-GCC-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTDB-Tk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTDB-Tk.md index e91303175ea9..284e11067c9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTDB-Tk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTDB-Tk.md @@ -6,6 +6,10 @@ hide: GTDB-Tk ======= + +A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. + +https://github.com/Ecogenomics/GTDBTk # Available modules @@ -14,15 +18,23 @@ The overview below shows which GTDB-Tk installations are available per HPC-UGent To start using GTDB-Tk, load one of these modules using a `module load` command like: ```shell -module load GTDB-Tk/2.0.0-intel-2021b +module load GTDB-Tk/2.3.2-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GTDB-Tk/2.3.2-foss-2023a|x|x|x|x|x|x| +|GTDB-Tk/2.0.0-intel-2021b|x|x|x|-|x|x| +|GTDB-Tk/1.7.0-intel-2020b|-|x|x|-|x|x| +|GTDB-Tk/1.5.0-intel-2020b|-|x|x|-|x|x| +|GTDB-Tk/1.3.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|GTDB-Tk/1.0.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### GTDB-Tk/2.3.2-foss-2023a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GTDB-Tk/2.0.0-intel-2021b|x|x|x|-|x|x|x|x| -|GTDB-Tk/1.7.0-intel-2020b|-|x|x|-|x|x|x|x| -|GTDB-Tk/1.5.0-intel-2020b|-|x|x|-|x|x|x|x| -|GTDB-Tk/1.3.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|GTDB-Tk/1.0.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +GTDB-Tk-2.3.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK+.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK+.md index 4dec55f57239..b60c32a3c0a3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK+.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK+.md @@ -6,6 +6,10 @@ hide: GTK+ ==== + +GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. + +https://developer.gnome.org/gtk3/stable/ # Available modules @@ -17,10 +21,10 @@ To start using GTK+, load one of these modules using a `module load` command lik module load GTK+/3.24.23-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GTK+/3.24.23-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|GTK+/3.24.13-GCCcore-8.3.0|-|x|x|-|x|x|-|x| -|GTK+/2.24.33-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GTK+/3.24.23-GCCcore-10.2.0|x|x|x|x|x|x| +|GTK+/3.24.13-GCCcore-8.3.0|-|x|x|-|x|x| +|GTK+/2.24.33-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK2.md index 579174f14d94..2b6e80124fb7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK2.md @@ -6,6 +6,10 @@ hide: GTK2 ==== + +The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications. + +https://developer.gnome.org/gtk+/stable/ # Available modules @@ -17,9 +21,9 @@ To start using GTK2, load one of these modules using a `module load` command lik module load GTK2/2.24.33-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GTK2/2.24.33-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|GTK2/2.24.33-GCCcore-10.3.0|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GTK2/2.24.33-GCCcore-11.3.0|x|x|x|x|x|x| +|GTK2/2.24.33-GCCcore-10.3.0|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK3.md index 68ee1e780330..a9ef6a1ef7a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK3.md @@ -6,6 +6,10 @@ hide: GTK3 ==== + +GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. + +https://developer.gnome.org/gtk3/stable/ # Available modules @@ -14,13 +18,14 @@ The overview below shows which GTK3 installations are available per HPC-UGent Ti To start using GTK3, load one of these modules using a `module load` command like: ```shell -module load GTK3/3.24.35-GCCcore-12.2.0 +module load GTK3/3.24.37-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GTK3/3.24.35-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|GTK3/3.24.31-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|GTK3/3.24.29-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GTK3/3.24.37-GCCcore-12.3.0|x|x|x|x|x|x| +|GTK3/3.24.35-GCCcore-12.2.0|x|x|x|x|x|x| +|GTK3/3.24.31-GCCcore-11.2.0|x|x|x|x|x|x| +|GTK3/3.24.29-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK4.md index ac3e14b1cfcb..7a0f087928a9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTK4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTK4.md @@ -6,6 +6,10 @@ hide: GTK4 ==== + +GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction. + +https://docs.gtk.org/gtk4/ # Available modules @@ -17,8 +21,8 @@ To start using GTK4, load one of these modules using a `module load` command lik module load GTK4/4.7.0-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GTK4/4.7.0-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GTK4/4.7.0-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GTS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GTS.md index 9b662fa6e8e8..2c9034f09172 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GTS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GTS.md @@ -6,6 +6,10 @@ hide: GTS === + +GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles. + +http://gts.sourceforge.net/ # Available modules @@ -17,12 +21,13 @@ To start using GTS, load one of these modules using a `module load` command like module load GTS/0.7.6-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GTS/0.7.6-foss-2019b|-|x|x|-|x|x|-|x| -|GTS/0.7.6-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|GTS/0.7.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|GTS/0.7.6-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|GTS/0.7.6-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GTS/0.7.6-foss-2019b|-|x|x|-|x|x| +|GTS/0.7.6-GCCcore-12.3.0|x|x|x|x|x|x| +|GTS/0.7.6-GCCcore-11.3.0|x|x|x|x|x|x| +|GTS/0.7.6-GCCcore-11.2.0|x|x|x|x|x|x| +|GTS/0.7.6-GCCcore-10.3.0|x|x|x|x|x|x| +|GTS/0.7.6-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GUSHR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GUSHR.md index 6a31c2860333..c5e9f31d4ae8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GUSHR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GUSHR.md @@ -6,6 +6,10 @@ hide: GUSHR ===== + +Assembly-free construction of UTRs from short read RNA-Seq data on the basis of coding sequence annotation. + +https://github.com/Gaius-Augustus/GUSHR # Available modules @@ -17,8 +21,8 @@ To start using GUSHR, load one of these modules using a `module load` command li module load GUSHR/2020-09-28-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GUSHR/2020-09-28-foss-2021b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GUSHR/2020-09-28-foss-2021b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GapFiller.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GapFiller.md index f26659de3d3f..b8b509f0c749 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GapFiller.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GapFiller.md @@ -6,6 +6,10 @@ hide: GapFiller ========= + +GapFiller is a seed-and-extend local assembler to fill the gap within paired reads. It can be used for both DNA and RNA and it has been tested on Illumina data. + +https://sourceforge.net/projects/gapfiller # Available modules @@ -17,8 +21,8 @@ To start using GapFiller, load one of these modules using a `module load` comman module load GapFiller/2.1.2-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GapFiller/2.1.2-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GapFiller/2.1.2-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gaussian.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gaussian.md index ae691a9fc892..b1f9d210ae27 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Gaussian.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gaussian.md @@ -6,6 +6,10 @@ hide: Gaussian ======== + +Gaussian is a computational chemistry software program. + +http://www.gaussian.com/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which Gaussian installations are available per HPC-UGen To start using Gaussian, load one of these modules using a `module load` command like: ```shell -module load Gaussian/g16_C.01-intel-2019b +module load Gaussian/g16_C.01-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Gaussian/g16_C.01-intel-2019b|-|x|x|-|x|x|x|x| -|Gaussian/g16_C.01-iimpi-2020b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Gaussian/g16_C.01-intel-2022a|x|x|x|x|x|x| +|Gaussian/g16_C.01-intel-2019b|-|x|x|-|x|x| +|Gaussian/g16_C.01-iimpi-2020b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gblocks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gblocks.md index 857781f230cd..f8d077a6bb16 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Gblocks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gblocks.md @@ -6,6 +6,10 @@ hide: Gblocks ======= + +Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis + +http://molevol.cmima.csic.es/castresana/Gblocks.html # Available modules @@ -17,8 +21,8 @@ To start using Gblocks, load one of these modules using a `module load` command module load Gblocks/0.91b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Gblocks/0.91b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Gblocks/0.91b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gdk-Pixbuf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gdk-Pixbuf.md index 9e51f6c5367c..bb1318e98f35 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Gdk-Pixbuf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gdk-Pixbuf.md @@ -6,6 +6,10 @@ hide: Gdk-Pixbuf ========== + +The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3. + +https://developer.gnome.org/gdk-pixbuf/stable/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which Gdk-Pixbuf installations are available per HPC-UG To start using Gdk-Pixbuf, load one of these modules using a `module load` command like: ```shell -module load Gdk-Pixbuf/2.42.10-GCCcore-12.2.0 +module load Gdk-Pixbuf/2.42.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Gdk-Pixbuf/2.42.10-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Gdk-Pixbuf/2.42.8-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Gdk-Pixbuf/2.42.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Gdk-Pixbuf/2.42.6-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Gdk-Pixbuf/2.40.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|Gdk-Pixbuf/2.38.2-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Gdk-Pixbuf/2.42.10-GCCcore-12.3.0|x|x|x|x|x|x| +|Gdk-Pixbuf/2.42.10-GCCcore-12.2.0|x|x|x|x|x|x| +|Gdk-Pixbuf/2.42.8-GCCcore-11.3.0|x|x|x|x|x|x| +|Gdk-Pixbuf/2.42.6-GCCcore-11.2.0|x|x|x|x|x|x| +|Gdk-Pixbuf/2.42.6-GCCcore-10.3.0|x|x|x|x|x|x| +|Gdk-Pixbuf/2.40.0-GCCcore-10.2.0|x|x|x|x|x|x| +|Gdk-Pixbuf/2.38.2-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Geant4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Geant4.md index 8ebb5cce1b64..ddc4bfb7121c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Geant4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Geant4.md @@ -6,6 +6,10 @@ hide: Geant4 ====== + +Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science. + +https://geant4.cern.ch/ # Available modules @@ -17,12 +21,12 @@ To start using Geant4, load one of these modules using a `module load` command l module load Geant4/11.0.2-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Geant4/11.0.2-GCC-11.3.0|x|x|x|x|x|x|x|x| -|Geant4/11.0.2-GCC-11.2.0|x|x|x|-|x|x|x|x| -|Geant4/11.0.1-GCC-11.2.0|x|x|x|x|x|x|x|x| -|Geant4/10.7.1-GCC-11.2.0|x|x|x|x|x|x|x|x| -|Geant4/10.6-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Geant4/11.0.2-GCC-11.3.0|x|x|x|x|x|x| +|Geant4/11.0.2-GCC-11.2.0|x|x|x|-|x|x| +|Geant4/11.0.1-GCC-11.2.0|x|x|x|x|x|x| +|Geant4/10.7.1-GCC-11.2.0|x|x|x|x|x|x| +|Geant4/10.6-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GeneMark-ET.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GeneMark-ET.md index 86774a1e3223..deeceb4167c1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GeneMark-ET.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GeneMark-ET.md @@ -6,6 +6,10 @@ hide: GeneMark-ET =========== + +Eukaryotic gene prediction suite with automatic training + +http://exon.gatech.edu/GeneMark # Available modules @@ -17,11 +21,11 @@ To start using GeneMark-ET, load one of these modules using a `module load` comm module load GeneMark-ET/4.71-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GeneMark-ET/4.71-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|GeneMark-ET/4.71-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|GeneMark-ET/4.65-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|GeneMark-ET/4.57-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GeneMark-ET/4.71-GCCcore-11.3.0|x|x|x|x|x|x| +|GeneMark-ET/4.71-GCCcore-11.2.0|x|x|x|x|x|x| +|GeneMark-ET/4.65-GCCcore-10.2.0|x|x|x|x|x|x| +|GeneMark-ET/4.57-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeThreader.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeThreader.md index ebd8511e7969..420e963b59e1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeThreader.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeThreader.md @@ -6,6 +6,10 @@ hide: GenomeThreader ============== + +GenomeThreader is a software tool to compute gene structure predictions. + +http://genomethreader.org # Available modules @@ -17,8 +21,8 @@ To start using GenomeThreader, load one of these modules using a `module load` c module load GenomeThreader/1.7.3-Linux_x86_64-64bit ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GenomeThreader/1.7.3-Linux_x86_64-64bit|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GenomeThreader/1.7.3-Linux_x86_64-64bit|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeWorks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeWorks.md index 47d01d3d7296..4f4166a96604 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeWorks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GenomeWorks.md @@ -6,6 +6,10 @@ hide: GenomeWorks =========== + +SDK for GPU accelerated genome assembly and analysis + +https://github.com/clara-parabricks/GenomeWorks # Available modules @@ -17,8 +21,15 @@ To start using GenomeWorks, load one of these modules using a `module load` comm module load GenomeWorks/2021.02.2-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GenomeWorks/2021.02.2-fosscuda-2020b|-|-|-|-|x|-| + + +### GenomeWorks/2021.02.2-fosscuda-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GenomeWorks/2021.02.2-fosscuda-2020b|-|-|-|-|x|-|-|-| +genomeworks-2021.02.2, sortedcollections-2.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gerris.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gerris.md new file mode 100644 index 000000000000..260635b19b46 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gerris.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Gerris +====== + + +Gerris is a Free Software program for the solution of the partial differential equations describing fluid flow + +http://gfs.sourceforge.net/wiki/index.php/Main_Page +# Available modules + + +The overview below shows which Gerris installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Gerris, load one of these modules using a `module load` command like: + +```shell +module load Gerris/20131206-gompi-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Gerris/20131206-gompi-2023a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GetOrganelle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GetOrganelle.md index 2680e70ee8e7..55f46eaa7f42 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GetOrganelle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GetOrganelle.md @@ -6,6 +6,10 @@ hide: GetOrganelle ============ + +This toolkit assemblies organelle genome from genomic skimming data. + +https://github.com/Kinggerm/GetOrganelle # Available modules @@ -17,10 +21,10 @@ To start using GetOrganelle, load one of these modules using a `module load` com module load GetOrganelle/1.7.5.3-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GetOrganelle/1.7.5.3-foss-2021b|x|x|x|-|x|x|x|x| -|GetOrganelle/1.7.4-pre2-foss-2020b|-|x|x|x|x|x|x|x| -|GetOrganelle/1.7.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GetOrganelle/1.7.5.3-foss-2021b|x|x|x|-|x|x| +|GetOrganelle/1.7.4-pre2-foss-2020b|-|x|x|x|x|x| +|GetOrganelle/1.7.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GffCompare.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GffCompare.md index ac81eeb79592..5cd687e66fab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GffCompare.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GffCompare.md @@ -6,6 +6,10 @@ hide: GffCompare ========== + +GffCompare provides classification and reference annotation mapping and matching statistics for RNA-Seq assemblies (transfrags) or other generic GFF/GTF files. + +https://github.com/gpertea/gffcompare # Available modules @@ -17,9 +21,9 @@ To start using GffCompare, load one of these modules using a `module load` comma module load GffCompare/0.12.6-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GffCompare/0.12.6-GCC-11.2.0|x|x|x|x|x|x|x|x| -|GffCompare/0.11.6-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GffCompare/0.12.6-GCC-11.2.0|x|x|x|x|x|x| +|GffCompare/0.11.6-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ghostscript.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ghostscript.md index c5b12d0bab60..0d47481e74a6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ghostscript.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ghostscript.md @@ -6,6 +6,10 @@ hide: Ghostscript =========== + +Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that. + +https://ghostscript.com # Available modules @@ -14,17 +18,18 @@ The overview below shows which Ghostscript installations are available per HPC-U To start using Ghostscript, load one of these modules using a `module load` command like: ```shell -module load Ghostscript/10.0.0-GCCcore-12.2.0 +module load Ghostscript/10.01.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Ghostscript/10.0.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Ghostscript/9.56.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Ghostscript/9.54.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Ghostscript/9.54.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Ghostscript/9.53.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Ghostscript/9.52-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Ghostscript/9.50-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Ghostscript/10.01.2-GCCcore-12.3.0|x|x|x|x|x|x| +|Ghostscript/10.0.0-GCCcore-12.2.0|x|x|x|x|x|x| +|Ghostscript/9.56.1-GCCcore-11.3.0|x|x|x|x|x|x| +|Ghostscript/9.54.0-GCCcore-11.2.0|x|x|x|x|x|x| +|Ghostscript/9.54.0-GCCcore-10.3.0|x|x|x|x|x|x| +|Ghostscript/9.53.3-GCCcore-10.2.0|x|x|x|x|x|x| +|Ghostscript/9.52-GCCcore-9.3.0|-|x|x|-|x|x| +|Ghostscript/9.50-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GimmeMotifs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GimmeMotifs.md index 2dd0eaf7a09c..10fbc373deb9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GimmeMotifs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GimmeMotifs.md @@ -6,6 +6,10 @@ hide: GimmeMotifs =========== + +Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments + +https://github.com/vanheeringen-lab/gimmemotifs # Available modules @@ -17,8 +21,15 @@ To start using GimmeMotifs, load one of these modules using a `module load` comm module load GimmeMotifs/0.17.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GimmeMotifs/0.17.2-foss-2022a|x|x|x|x|x|x| + + +### GimmeMotifs/0.17.2-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GimmeMotifs/0.17.2-foss-2022a|x|x|x|x|x|x|x|x| +biofluff-3.0.4, diskcache-5.4.0, feather-format-0.4.1, gimmemotifs-0.17.2, iteround-1.0.4, logomaker-0.8, loguru-0.6.0, palettable-3.3.0, xdg-6.0.0, xxhash-3.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Giotto-Suite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Giotto-Suite.md index 4b17afe674b7..38f61bac5d6e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Giotto-Suite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Giotto-Suite.md @@ -6,6 +6,10 @@ hide: Giotto-Suite ============ + +Giotto Suite is focused on building a modular platform for analyzing spatial-omics technologies and strives to be interoperable with other popular spatial analysis tools and classes. Using established packages optimized for large(r) data, Giotto Suite adopts fast and memory efficient methods to create an interactive analysis. + +https://github.com/drieslab/Giotto # Available modules @@ -17,8 +21,15 @@ To start using Giotto-Suite, load one of these modules using a `module load` com module load Giotto-Suite/3.0.1-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Giotto-Suite/3.0.1-foss-2022a-R-4.2.1|x|x|x|x|x|x| + + +### Giotto-Suite/3.0.1-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Giotto-Suite/3.0.1-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +beachmat-2.14.0, BiocGenerics-0.44.0, BiocParallel-1.32.5, BiocSingular-1.14.0, dbscan-1.1-11, DelayedArray-0.24.0, DelayedMatrixStats-1.20.0, dqrng-0.3.0, Giotto-Suite-3.0.1, IRanges-2.32.0, limma-3.54.0, Matrix-1.5-3, MatrixGenerics-1.10.0, RcppAnnoy-0.0.20, rsvd-1.0.5, S4Vectors-0.36.1, ScaledMatrix-1.6.0, sitmo-2.0.2, smfishHmrf-0.1, sparseMatrixStats-1.10.0, uwot-0.1.11 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GitPython.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GitPython.md index 5de97572d540..d8c186a9c2c1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GitPython.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GitPython.md @@ -6,6 +6,10 @@ hide: GitPython ========= + +GitPython is a python library used to interact with Git repositories + +https://gitpython.readthedocs.org # Available modules @@ -14,15 +18,60 @@ The overview below shows which GitPython installations are available per HPC-UGe To start using GitPython, load one of these modules using a `module load` command like: ```shell -module load GitPython/3.1.27-GCCcore-11.3.0 +module load GitPython/3.1.40-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GitPython/3.1.40-GCCcore-12.3.0|x|x|x|x|x|x| +|GitPython/3.1.31-GCCcore-12.2.0|x|x|x|x|x|x| +|GitPython/3.1.27-GCCcore-11.3.0|x|x|x|x|x|x| +|GitPython/3.1.24-GCCcore-11.2.0|x|x|x|-|x|x| +|GitPython/3.1.14-GCCcore-10.2.0|-|x|x|x|x|x| +|GitPython/3.1.9-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| +|GitPython/3.1.0-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| + + +### GitPython/3.1.40-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +gitdb-4.0.11, GitPython-3.1.40, smmap-5.0.1 + +### GitPython/3.1.31-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +gitdb-4.0.10, GitPython-3.1.31, smmap-5.0.0 + +### GitPython/3.1.27-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +gitdb-4.0.9, GitPython-3.1.27, smmap-5.0.0 + +### GitPython/3.1.24-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +gitdb-4.0.9, GitPython-3.1.24, smmap-5.0.0 + +### GitPython/3.1.14-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +gitdb-4.0.7, GitPython-3.1.14, smmap-4.0.0 + +### GitPython/3.1.9-GCCcore-9.3.0-Python-3.8.2 + +This is a list of extensions included in the module: + +gitdb-4.0.5, GitPython-3.1.9, smmap-3.0.4 + +### GitPython/3.1.0-GCCcore-8.3.0-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GitPython/3.1.27-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|GitPython/3.1.24-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|GitPython/3.1.14-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|GitPython/3.1.9-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| -|GitPython/3.1.0-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|-|x| +gitdb-4.0.2, GitPython-3.1.0, smmap-3.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GlimmerHMM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GlimmerHMM.md index 9e8c731bcc92..e0d9c0cc535c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GlimmerHMM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GlimmerHMM.md @@ -6,6 +6,10 @@ hide: GlimmerHMM ========== + +GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model. Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models. + +https://ccb.jhu.edu/software/glimmerhmm # Available modules @@ -17,9 +21,9 @@ To start using GlimmerHMM, load one of these modules using a `module load` comma module load GlimmerHMM/3.0.4c-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GlimmerHMM/3.0.4c-GCC-10.2.0|-|x|x|x|x|x|x|x| -|GlimmerHMM/3.0.4c-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GlimmerHMM/3.0.4c-GCC-10.2.0|-|x|x|x|x|x| +|GlimmerHMM/3.0.4c-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GlobalArrays.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GlobalArrays.md index 58e5d32d335f..62303c1b24a3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GlobalArrays.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GlobalArrays.md @@ -6,6 +6,10 @@ hide: GlobalArrays ============ + +Global Arrays (GA) is a Partitioned Global Address Space (PGAS) programming model + +https://hpc.pnl.gov/globalarrays # Available modules @@ -14,11 +18,12 @@ The overview below shows which GlobalArrays installations are available per HPC- To start using GlobalArrays, load one of these modules using a `module load` command like: ```shell -module load GlobalArrays/5.8-intel-2021a +module load GlobalArrays/5.8-iomkl-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GlobalArrays/5.8-intel-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GlobalArrays/5.8-iomkl-2021a|x|x|x|x|x|x| +|GlobalArrays/5.8-intel-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GnuTLS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GnuTLS.md index 60c30dfc6def..2258615103e7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GnuTLS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GnuTLS.md @@ -6,6 +6,10 @@ hide: GnuTLS ====== + +GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability. + +https://www.gnutls.org # Available modules @@ -17,9 +21,9 @@ To start using GnuTLS, load one of these modules using a `module load` command l module load GnuTLS/3.7.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GnuTLS/3.7.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|GnuTLS/3.7.2-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GnuTLS/3.7.3-GCCcore-11.2.0|x|x|x|x|x|x| +|GnuTLS/3.7.2-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Go.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Go.md index be1a195f9422..b7f84352d988 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Go.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Go.md @@ -6,6 +6,10 @@ hide: Go == + +Go is an open source programming language that makes it easy to build simple, reliable, and efficient software. + +https://www.golang.org # Available modules @@ -14,13 +18,15 @@ The overview below shows which Go installations are available per HPC-UGent Tier To start using Go, load one of these modules using a `module load` command like: ```shell -module load Go/1.17.6 +module load Go/1.21.6 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Go/1.17.6|x|x|x|-|x|x|x|x| -|Go/1.17.3|-|x|x|-|x|-|x|-| -|Go/1.14|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Go/1.21.6|x|x|x|x|x|x| +|Go/1.21.2|x|x|x|x|x|x| +|Go/1.17.6|x|x|x|-|x|x| +|Go/1.17.3|-|x|x|-|x|-| +|Go/1.14|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gradle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gradle.md new file mode 100644 index 000000000000..f2ab0208cecd --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gradle.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Gradle +====== + + +Complete Gradle install.From mobile apps to microservices, from small startups to big enterprises,Gradle helps teams build, automate and deliver better software, faster. + +https://gradle.org +# Available modules + + +The overview below shows which Gradle installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Gradle, load one of these modules using a `module load` command like: + +```shell +module load Gradle/8.6-Java-17 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Gradle/8.6-Java-17|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap.md index 03e23129f180..6dbe229cd2ed 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap.md @@ -6,6 +6,10 @@ hide: GraphMap ======== + +A highly sensitive and accurate mapper for long, error-prone reads + +https://github.com/isovic/graphmap # Available modules @@ -17,8 +21,8 @@ To start using GraphMap, load one of these modules using a `module load` command module load GraphMap/0.5.2-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GraphMap/0.5.2-foss-2019b|-|-|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GraphMap/0.5.2-foss-2019b|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap2.md index 826667edc52c..bccc05b5bb04 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphMap2.md @@ -6,6 +6,10 @@ hide: GraphMap2 ========= + +A highly sensitive and accurate mapper for long, error-prone reads + +https://github.com/lbcb-sci/graphmap2 # Available modules @@ -17,8 +21,8 @@ To start using GraphMap2, load one of these modules using a `module load` comman module load GraphMap2/0.6.4-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GraphMap2/0.6.4-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GraphMap2/0.6.4-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Graphene.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Graphene.md index a04b0b9f667c..c4d49d0098b9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Graphene.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Graphene.md @@ -6,6 +6,10 @@ hide: Graphene ======== + +Graphene is a thin layer of types for graphic libraries + +https://ebassi.github.io/graphene/ # Available modules @@ -17,8 +21,8 @@ To start using Graphene, load one of these modules using a `module load` command module load Graphene/1.10.8-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Graphene/1.10.8-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Graphene/1.10.8-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphicsMagick.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphicsMagick.md index bc9c6659fdf5..f225ad2c3de1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GraphicsMagick.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GraphicsMagick.md @@ -6,6 +6,10 @@ hide: GraphicsMagick ============== + +GraphicsMagick is the swiss army knife of image processing. + +https://www.graphicsmagick.org/ # Available modules @@ -17,8 +21,8 @@ To start using GraphicsMagick, load one of these modules using a `module load` c module load GraphicsMagick/1.3.34-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GraphicsMagick/1.3.34-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GraphicsMagick/1.3.34-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Graphviz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Graphviz.md index 36c7f39c1c88..54e674cadf87 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Graphviz.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Graphviz.md @@ -6,6 +6,10 @@ hide: Graphviz ======== + +Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. + +https://www.graphviz.org/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which Graphviz installations are available per HPC-UGen To start using Graphviz, load one of these modules using a `module load` command like: ```shell -module load Graphviz/5.0.0-GCCcore-11.3.0 +module load Graphviz/8.1.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Graphviz/5.0.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Graphviz/2.50.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Graphviz/2.47.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Graphviz/2.47.0-GCCcore-10.2.0-Java-11|-|x|x|x|x|x|x|x| -|Graphviz/2.42.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|Graphviz/2.42.2-foss-2019b|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Graphviz/8.1.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Graphviz/5.0.0-GCCcore-11.3.0|x|x|x|x|x|x| +|Graphviz/2.50.0-GCCcore-11.2.0|x|x|x|x|x|x| +|Graphviz/2.47.2-GCCcore-10.3.0|x|x|x|x|x|x| +|Graphviz/2.47.0-GCCcore-10.2.0-Java-11|-|x|x|x|x|x| +|Graphviz/2.42.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|Graphviz/2.42.2-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Greenlet.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Greenlet.md index 823855510d3a..51207da72a6a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Greenlet.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Greenlet.md @@ -6,6 +6,10 @@ hide: Greenlet ======== + +The greenlet package is a spin-off of Stackless, a version of CPython thatsupports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a singleor a few OS-level threads) and are synchronized with data exchanges on "channels".A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicitscheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs. + +https://github.com/python-greenlet/greenlet # Available modules @@ -14,11 +18,12 @@ The overview below shows which Greenlet installations are available per HPC-UGen To start using Greenlet, load one of these modules using a `module load` command like: ```shell -module load Greenlet/2.0.2-foss-2022a +module load Greenlet/2.0.2-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Greenlet/2.0.2-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Greenlet/2.0.2-foss-2022b|x|x|x|x|x|x| +|Greenlet/2.0.2-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/GroIMP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/GroIMP.md index e4c31cca0264..bb824e97a405 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/GroIMP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/GroIMP.md @@ -6,6 +6,10 @@ hide: GroIMP ====== + +GroIMP (Growth Grammar-related Interactive Modelling Platform) is a 3D-modelling platform. + +http://www.grogra.de/software/groimp # Available modules @@ -17,8 +21,8 @@ To start using GroIMP, load one of these modules using a `module load` command l module load GroIMP/1.5-Java-1.8 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|GroIMP/1.5-Java-1.8|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|GroIMP/1.5-Java-1.8|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Guile.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Guile.md index 49ffff91d120..655b7e6b5aaa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Guile.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Guile.md @@ -6,6 +6,10 @@ hide: Guile ===== + +Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts. + +https://www.gnu.org/software/guile/ # Available modules @@ -17,11 +21,11 @@ To start using Guile, load one of these modules using a `module load` command li module load Guile/3.0.7-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Guile/3.0.7-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Guile/2.2.7-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|Guile/1.8.8-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Guile/1.8.8-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Guile/3.0.7-GCCcore-11.2.0|x|x|x|x|x|x| +|Guile/2.2.7-GCCcore-10.3.0|-|x|x|-|x|x| +|Guile/1.8.8-GCCcore-9.3.0|-|x|x|-|x|x| +|Guile/1.8.8-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Guppy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Guppy.md index 6b107e178458..7ce058b2bafa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Guppy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Guppy.md @@ -6,6 +6,10 @@ hide: Guppy ===== + +Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies' basecalling algorithms, and several bioinformatic post-processing features. + +https://nanoporetech.com/nanopore-sequencing-data-analysis # Available modules @@ -17,37 +21,37 @@ To start using Guppy, load one of these modules using a `module load` command li module load Guppy/6.5.7-gpu ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Guppy/6.5.7-gpu|x|-|x|-|x|-|-|-| -|Guppy/6.5.7-cpu|x|x|-|x|-|x|x|x| -|Guppy/6.4.6-gpu|x|-|x|-|x|-|-|-| -|Guppy/6.4.6-cpu|-|x|x|x|x|x|x|x| -|Guppy/6.4.2-gpu|x|-|-|-|x|-|-|-| -|Guppy/6.4.2-cpu|-|x|x|-|x|x|x|x| -|Guppy/6.3.8-gpu|x|-|-|-|x|-|-|-| -|Guppy/6.3.8-cpu|-|x|x|-|x|x|x|x| -|Guppy/6.3.7-gpu|x|-|-|-|x|-|-|-| -|Guppy/6.3.7-cpu|-|x|x|-|x|x|x|x| -|Guppy/6.1.7-gpu|x|-|-|-|x|-|-|-| -|Guppy/6.1.7-cpu|-|x|x|-|x|x|x|x| -|Guppy/6.1.2-gpu|x|-|-|-|x|-|-|-| -|Guppy/6.1.2-cpu|-|x|x|-|x|x|x|x| -|Guppy/6.0.1-gpu|x|-|-|-|x|-|-|-| -|Guppy/6.0.1-cpu|-|x|x|-|x|x|x|x| -|Guppy/5.0.16-gpu|x|-|-|-|x|-|-|-| -|Guppy/5.0.16-cpu|-|x|x|-|x|-|-|-| -|Guppy/5.0.15-gpu|x|-|-|-|x|-|-|-| -|Guppy/5.0.15-cpu|-|x|x|-|x|x|x|x| -|Guppy/5.0.14-gpu|-|-|-|-|x|-|-|-| -|Guppy/5.0.14-cpu|-|x|x|-|x|x|x|x| -|Guppy/5.0.11-gpu|-|-|-|-|x|-|-|-| -|Guppy/5.0.11-cpu|-|x|x|-|x|x|x|x| -|Guppy/5.0.7-gpu|-|-|-|-|x|-|-|-| -|Guppy/5.0.7-cpu|-|x|x|-|x|x|x|x| -|Guppy/4.4.1-cpu|-|x|x|-|x|-|-|-| -|Guppy/4.2.2-cpu|-|x|x|-|x|-|-|-| -|Guppy/4.0.15-cpu|-|x|x|-|x|-|-|-| -|Guppy/3.5.2-cpu|-|-|x|-|x|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Guppy/6.5.7-gpu|x|-|x|-|x|-| +|Guppy/6.5.7-cpu|x|x|-|x|-|x| +|Guppy/6.4.6-gpu|x|-|x|-|x|-| +|Guppy/6.4.6-cpu|-|x|x|x|x|x| +|Guppy/6.4.2-gpu|x|-|-|-|x|-| +|Guppy/6.4.2-cpu|-|x|x|-|x|x| +|Guppy/6.3.8-gpu|x|-|-|-|x|-| +|Guppy/6.3.8-cpu|-|x|x|-|x|x| +|Guppy/6.3.7-gpu|x|-|-|-|x|-| +|Guppy/6.3.7-cpu|-|x|x|-|x|x| +|Guppy/6.1.7-gpu|x|-|-|-|x|-| +|Guppy/6.1.7-cpu|-|x|x|-|x|x| +|Guppy/6.1.2-gpu|x|-|-|-|x|-| +|Guppy/6.1.2-cpu|-|x|x|-|x|x| +|Guppy/6.0.1-gpu|x|-|-|-|x|-| +|Guppy/6.0.1-cpu|-|x|x|-|x|x| +|Guppy/5.0.16-gpu|x|-|-|-|x|-| +|Guppy/5.0.16-cpu|-|x|x|-|x|-| +|Guppy/5.0.15-gpu|x|-|-|-|x|-| +|Guppy/5.0.15-cpu|-|x|x|-|x|x| +|Guppy/5.0.14-gpu|-|-|-|-|x|-| +|Guppy/5.0.14-cpu|-|x|x|-|x|x| +|Guppy/5.0.11-gpu|-|-|-|-|x|-| +|Guppy/5.0.11-cpu|-|x|x|-|x|x| +|Guppy/5.0.7-gpu|-|-|-|-|x|-| +|Guppy/5.0.7-cpu|-|x|x|-|x|x| +|Guppy/4.4.1-cpu|-|x|x|-|x|-| +|Guppy/4.2.2-cpu|-|x|x|-|x|-| +|Guppy/4.0.15-cpu|-|x|x|-|x|-| +|Guppy/3.5.2-cpu|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Gurobi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Gurobi.md index 77197c76ae47..ab745b58cb86 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Gurobi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Gurobi.md @@ -6,6 +6,10 @@ hide: Gurobi ====== + +The Gurobi Optimizer is a state-of-the-art solver for mathematical programming.The solvers in the Gurobi Optimizer were designed from the ground up to exploit modern architectures and multi-core processors, using the most advanced implementations of the latest algorithms. + +https://www.gurobi.com # Available modules @@ -14,14 +18,22 @@ The overview below shows which Gurobi installations are available per HPC-UGent To start using Gurobi, load one of these modules using a `module load` command like: ```shell -module load Gurobi/9.5.2-GCCcore-11.3.0 +module load Gurobi/11.0.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Gurobi/11.0.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Gurobi/9.5.2-GCCcore-11.3.0|x|x|x|x|x|x| +|Gurobi/9.5.0-GCCcore-11.2.0|x|x|x|x|x|x| +|Gurobi/9.1.1-GCCcore-10.2.0|-|x|x|x|x|x| +|Gurobi/9.1.0|-|x|x|-|x|-| + + +### Gurobi/11.0.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Gurobi/9.5.2-GCCcore-11.3.0|x|x|x|-|x|x|x|x| -|Gurobi/9.5.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Gurobi/9.1.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|Gurobi/9.1.0|-|x|x|-|x|-|-|-| +gurobipy-11.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HAL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HAL.md index a2bd76641da0..dbf0f2abb261 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HAL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HAL.md @@ -6,6 +6,10 @@ hide: HAL === + +HAL is a structure to efficiently store and index multiple genome alignmentsand ancestral reconstructions. HAL is a graph-based representation whichprovides several advantages over matrix/block-based formats such as MAF, such asimproved scalability and the ability to perform queries with respect to anarbitrary reference or subtree.This package includes the HAL API and several analysis and conversion toolswhich are described below. HAL files are presently stored in either HDF5 or mmapformat, but we note that the tools and most of the API are format-independent,so other databases could be implemented in the future. + +https://github.com/ComparativeGenomicsToolkit/hal # Available modules @@ -17,8 +21,15 @@ To start using HAL, load one of these modules using a `module load` command like module load HAL/2.1-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HAL/2.1-foss-2020b|-|x|x|x|x|x| + + +### HAL/2.1-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HAL/2.1-foss-2020b|-|x|x|x|x|x|x|x| +addict-2.2.1, blessed-1.18.1, dill-0.3.4, docker-4.3.1, enlighten-1.10.1, newick-1.3.0, prefixed-0.3.2, toil-5.3.0, websocket-client-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HDBSCAN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HDBSCAN.md new file mode 100644 index 000000000000..cd393f693a3d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HDBSCAN.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +HDBSCAN +======= + + +The hdbscan library is a suite of tools to use unsupervised learning to find clusters, or dense regions, of a dataset. The primary algorithm is HDBSCAN* as proposed by Campello, Moulavi, and Sander. The library provides a high performance implementation of this algorithm, along with tools for analysing the resulting clustering. + +http://hdbscan.readthedocs.io/en/latest/ +# Available modules + + +The overview below shows which HDBSCAN installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using HDBSCAN, load one of these modules using a `module load` command like: + +```shell +module load HDBSCAN/0.8.29-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HDBSCAN/0.8.29-foss-2022a|x|x|x|x|x|x| + + +### HDBSCAN/0.8.29-foss-2022a + +This is a list of extensions included in the module: + +HDBSCAN-0.8.29 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HDDM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HDDM.md index bd219e4627e2..c426be7b55f0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HDDM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HDDM.md @@ -6,6 +6,10 @@ hide: HDDM ==== + +HDDM is a Python toolbox for hierarchical Bayesian parameter estimation of the Drift Diffusion Model (via PyMC). + +http://ski.clps.brown.edu/hddm_docs # Available modules @@ -17,9 +21,22 @@ To start using HDDM, load one of these modules using a `module load` command lik module load HDDM/0.7.5-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HDDM/0.7.5-intel-2019b-Python-3.7.4|-|x|-|-|-|x| +|HDDM/0.7.5-intel-2019b-Python-2.7.16|-|x|-|-|-|x| + + +### HDDM/0.7.5-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +HDDM-0.7.5, kabuki-0.6.2, patsy-0.5.1, pymc-2.3.7 + +### HDDM/0.7.5-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HDDM/0.7.5-intel-2019b-Python-3.7.4|-|x|-|-|-|x|-|x| -|HDDM/0.7.5-intel-2019b-Python-2.7.16|-|x|-|-|-|x|-|x| +HDDM-0.7.5, kabuki-0.6.2, patsy-0.5.1, pymc-2.3.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HDF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HDF.md index 5ffe16d31889..b812f18c647a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HDF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HDF.md @@ -6,6 +6,10 @@ hide: HDF === + +HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines. + +https://www.hdfgroup.org/products/hdf4/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which HDF installations are available per HPC-UGent Tie To start using HDF, load one of these modules using a `module load` command like: ```shell -module load HDF/4.2.15-GCCcore-12.2.0 +module load HDF/4.2.16-2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HDF/4.2.15-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|HDF/4.2.15-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|HDF/4.2.15-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|HDF/4.2.15-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|HDF/4.2.15-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|HDF/4.2.15-GCCcore-9.3.0|-|-|x|-|x|x|x|x| -|HDF/4.2.14-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HDF/4.2.16-2-GCCcore-12.3.0|x|x|x|x|x|x| +|HDF/4.2.15-GCCcore-12.2.0|x|x|x|x|x|x| +|HDF/4.2.15-GCCcore-11.3.0|x|x|x|x|x|x| +|HDF/4.2.15-GCCcore-11.2.0|x|x|x|x|x|x| +|HDF/4.2.15-GCCcore-10.3.0|x|x|x|x|x|x| +|HDF/4.2.15-GCCcore-10.2.0|-|x|x|x|x|x| +|HDF/4.2.15-GCCcore-9.3.0|-|-|x|-|x|x| +|HDF/4.2.14-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HDF5.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HDF5.md index 62a4f50d2049..9d8f62be5868 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HDF5.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HDF5.md @@ -6,6 +6,10 @@ hide: HDF5 ==== + +HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. + +https://portal.hdfgroup.org/display/support # Available modules @@ -14,26 +18,28 @@ The overview below shows which HDF5 installations are available per HPC-UGent Ti To start using HDF5, load one of these modules using a `module load` command like: ```shell -module load HDF5/1.14.0-gompi-2022b +module load HDF5/1.14.0-gompi-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HDF5/1.14.0-gompi-2022b|x|x|x|x|x|x|x|x| -|HDF5/1.13.1-gompi-2022a|x|x|x|-|x|x|x|x| -|HDF5/1.12.2-iimpi-2022a|x|x|x|x|x|x|x|x| -|HDF5/1.12.2-gompi-2022a|x|x|x|x|x|x|x|x| -|HDF5/1.12.1-iimpi-2021b|x|x|x|x|x|x|x|x| -|HDF5/1.12.1-gompi-2021b|x|x|x|x|x|x|x|x| -|HDF5/1.10.8-gompi-2021b|x|x|x|-|x|x|x|x| -|HDF5/1.10.7-iimpi-2021a|-|x|x|-|x|x|x|x| -|HDF5/1.10.7-iimpi-2020b|-|x|x|x|x|x|x|x| -|HDF5/1.10.7-gompic-2020b|x|-|-|-|x|-|-|-| -|HDF5/1.10.7-gompi-2021a|x|x|x|x|x|x|x|x| -|HDF5/1.10.7-gompi-2020b|x|x|x|x|x|x|x|x| -|HDF5/1.10.6-iimpi-2020a|x|x|x|x|x|x|x|x| -|HDF5/1.10.6-gompi-2020a|-|x|x|-|x|x|x|x| -|HDF5/1.10.5-iimpi-2019b|-|x|x|-|x|x|x|x| -|HDF5/1.10.5-gompi-2019b|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HDF5/1.14.0-gompi-2023a|x|x|x|x|x|x| +|HDF5/1.14.0-gompi-2022b|x|x|x|x|x|x| +|HDF5/1.13.1-gompi-2022a|x|x|x|-|x|x| +|HDF5/1.12.2-iimpi-2022a|x|x|x|x|x|x| +|HDF5/1.12.2-gompi-2022a|x|x|x|x|x|x| +|HDF5/1.12.1-iimpi-2021b|x|x|x|x|x|x| +|HDF5/1.12.1-gompi-2021b|x|x|x|x|x|x| +|HDF5/1.10.8-gompi-2021b|x|x|x|-|x|x| +|HDF5/1.10.7-iompi-2021a|x|x|x|x|x|x| +|HDF5/1.10.7-iimpi-2021a|-|x|x|-|x|x| +|HDF5/1.10.7-iimpi-2020b|-|x|x|x|x|x| +|HDF5/1.10.7-gompic-2020b|x|-|-|-|x|-| +|HDF5/1.10.7-gompi-2021a|x|x|x|x|x|x| +|HDF5/1.10.7-gompi-2020b|x|x|x|x|x|x| +|HDF5/1.10.6-iimpi-2020a|x|x|x|x|x|x| +|HDF5/1.10.6-gompi-2020a|-|x|x|-|x|x| +|HDF5/1.10.5-iimpi-2019b|-|x|x|-|x|x| +|HDF5/1.10.5-gompi-2019b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HH-suite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HH-suite.md index 46202dd19dd3..62d4152def1f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HH-suite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HH-suite.md @@ -6,6 +6,10 @@ hide: HH-suite ======== + +The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). + +https://github.com/soedinglab/hh-suite # Available modules @@ -17,13 +21,13 @@ To start using HH-suite, load one of these modules using a `module load` command module load HH-suite/3.3.0-gompic-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HH-suite/3.3.0-gompic-2020b|x|-|-|-|x|-|-|-| -|HH-suite/3.3.0-gompi-2022a|x|x|x|x|x|x|x|x| -|HH-suite/3.3.0-gompi-2021b|x|-|x|-|x|-|-|-| -|HH-suite/3.3.0-gompi-2021a|x|x|x|-|x|x|x|x| -|HH-suite/3.3.0-gompi-2020b|-|x|x|x|x|x|x|x| -|HH-suite/3.2.0-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HH-suite/3.3.0-gompic-2020b|x|-|-|-|x|-| +|HH-suite/3.3.0-gompi-2022a|x|x|x|x|x|x| +|HH-suite/3.3.0-gompi-2021b|x|-|x|-|x|-| +|HH-suite/3.3.0-gompi-2021a|x|x|x|-|x|x| +|HH-suite/3.3.0-gompi-2020b|-|x|x|x|x|x| +|HH-suite/3.2.0-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HISAT2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HISAT2.md index 518235d40efe..25c8fc707abd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HISAT2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HISAT2.md @@ -6,6 +6,10 @@ hide: HISAT2 ====== + +HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome). + +https://daehwankimlab.github.io/hisat2 # Available modules @@ -17,10 +21,10 @@ To start using HISAT2, load one of these modules using a `module load` command l module load HISAT2/2.2.1-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HISAT2/2.2.1-gompi-2022a|x|x|x|x|x|x|x|x| -|HISAT2/2.2.1-gompi-2021b|x|x|x|-|x|x|x|x| -|HISAT2/2.2.1-gompi-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HISAT2/2.2.1-gompi-2022a|x|x|x|x|x|x| +|HISAT2/2.2.1-gompi-2021b|x|x|x|x|x|x| +|HISAT2/2.2.1-gompi-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER.md index deaa2fa39e67..68f1a90f437e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER.md @@ -6,6 +6,10 @@ hide: HMMER ===== + +HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST. + +http://hmmer.org/ # Available modules @@ -14,23 +18,25 @@ The overview below shows which HMMER installations are available per HPC-UGent T To start using HMMER, load one of these modules using a `module load` command like: ```shell -module load HMMER/3.3.2-iimpi-2021b +module load HMMER/3.4-gompi-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HMMER/3.3.2-iimpi-2021b|x|x|x|-|x|x|x|x| -|HMMER/3.3.2-iimpi-2020b|-|x|x|x|x|x|x|x| -|HMMER/3.3.2-gompic-2020b|x|-|-|-|x|-|-|-| -|HMMER/3.3.2-gompi-2022a|x|x|x|x|x|x|x|x| -|HMMER/3.3.2-gompi-2021b|x|x|x|-|x|x|x|x| -|HMMER/3.3.2-gompi-2021a|x|x|x|-|x|x|x|x| -|HMMER/3.3.2-gompi-2020b|x|x|x|x|x|x|x|x| -|HMMER/3.3.2-gompi-2020a|-|x|x|-|x|x|x|x| -|HMMER/3.3.2-gompi-2019b|-|x|x|-|x|x|x|x| -|HMMER/3.3.1-iimpi-2020a|-|x|x|-|x|x|x|x| -|HMMER/3.3.1-gompi-2020a|-|x|x|-|x|x|x|x| -|HMMER/3.2.1-iimpi-2019b|-|x|x|-|x|x|-|x| -|HMMER/3.2.1-gompi-2019b|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HMMER/3.4-gompi-2023a|x|x|x|x|x|x| +|HMMER/3.3.2-iimpi-2021b|x|x|x|-|x|x| +|HMMER/3.3.2-iimpi-2020b|-|x|x|x|x|x| +|HMMER/3.3.2-gompic-2020b|x|-|-|-|x|-| +|HMMER/3.3.2-gompi-2022b|x|x|x|x|x|x| +|HMMER/3.3.2-gompi-2022a|x|x|x|x|x|x| +|HMMER/3.3.2-gompi-2021b|x|x|x|-|x|x| +|HMMER/3.3.2-gompi-2021a|x|x|x|-|x|x| +|HMMER/3.3.2-gompi-2020b|x|x|x|x|x|x| +|HMMER/3.3.2-gompi-2020a|-|x|x|-|x|x| +|HMMER/3.3.2-gompi-2019b|-|x|x|-|x|x| +|HMMER/3.3.1-iimpi-2020a|-|x|x|-|x|x| +|HMMER/3.3.1-gompi-2020a|-|x|x|-|x|x| +|HMMER/3.2.1-iimpi-2019b|-|x|x|-|x|x| +|HMMER/3.2.1-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER2.md index 603dfc931ff4..77fc4dd17a2c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HMMER2.md @@ -6,6 +6,10 @@ hide: HMMER2 ====== + +HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. + +http://hmmer.org # Available modules @@ -17,10 +21,10 @@ To start using HMMER2, load one of these modules using a `module load` command l module load HMMER2/2.3.2-GCC-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HMMER2/2.3.2-GCC-10.3.0|-|x|x|-|x|x|x|x| -|HMMER2/2.3.2-GCC-10.2.0|-|x|x|x|x|x|x|x| -|HMMER2/2.3.2-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HMMER2/2.3.2-GCC-10.3.0|-|x|x|-|x|x| +|HMMER2/2.3.2-GCC-10.2.0|-|x|x|x|x|x| +|HMMER2/2.3.2-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HPL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HPL.md index 32661f904889..6567c626ef6d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HPL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HPL.md @@ -6,6 +6,10 @@ hide: HPL === + +HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark. + +http://www.netlib.org/benchmark/hpl/ # Available modules @@ -17,12 +21,13 @@ To start using HPL, load one of these modules using a `module load` command like module load HPL/2.3-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HPL/2.3-intel-2019b|-|x|x|-|x|x|x|x| -|HPL/2.3-iibff-2020b|-|x|-|-|-|-|-|-| -|HPL/2.3-gobff-2020b|-|x|-|-|-|-|-|-| -|HPL/2.3-foss-2019b|-|x|x|-|x|x|-|x| -|HPL/2.0.15-intel-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HPL/2.3-intel-2019b|-|x|x|-|x|x| +|HPL/2.3-iibff-2020b|-|x|-|-|-|-| +|HPL/2.3-gobff-2020b|-|x|-|-|-|-| +|HPL/2.3-foss-2023b|x|x|x|x|x|x| +|HPL/2.3-foss-2019b|-|x|x|-|x|x| +|HPL/2.0.15-intel-2022a-CUDA-11.7.0|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSeq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSeq.md index cd8a584008e4..924e6030253b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSeq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSeq.md @@ -6,6 +6,10 @@ hide: HTSeq ===== + +HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments. + +https://github.com/simon-anders/htseq # Available modules @@ -17,9 +21,16 @@ To start using HTSeq, load one of these modules using a `module load` command li module load HTSeq/2.0.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HTSeq/2.0.2-foss-2022a|x|x|x|x|x|x| +|HTSeq/0.11.3-foss-2021b|x|x|x|-|x|x| + + +### HTSeq/2.0.2-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HTSeq/2.0.2-foss-2022a|x|x|x|x|x|x|x|x| -|HTSeq/0.11.3-foss-2021b|x|x|x|-|x|x|x|x| +HTSeq-2.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSlib.md index f000ce5b4474..36098f761c48 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSlib.md @@ -6,6 +6,10 @@ hide: HTSlib ====== + +A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix + +https://www.htslib.org/ # Available modules @@ -14,18 +18,20 @@ The overview below shows which HTSlib installations are available per HPC-UGent To start using HTSlib, load one of these modules using a `module load` command like: ```shell -module load HTSlib/1.15.1-GCC-11.3.0 +module load HTSlib/1.18-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HTSlib/1.15.1-GCC-11.3.0|x|x|x|x|x|x|x|x| -|HTSlib/1.14-GCC-11.2.0|x|x|x|x|x|x|x|x| -|HTSlib/1.12-GCC-10.3.0|x|x|x|-|x|x|x|x| -|HTSlib/1.12-GCC-10.2.0|-|x|x|-|x|x|x|x| -|HTSlib/1.11-GCC-10.2.0|x|x|x|x|x|x|x|x| -|HTSlib/1.10.2-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|HTSlib/1.10.2-GCC-9.3.0|-|x|x|-|x|x|x|x| -|HTSlib/1.10.2-GCC-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HTSlib/1.18-GCC-12.3.0|x|x|x|x|x|x| +|HTSlib/1.17-GCC-12.2.0|x|x|x|x|x|x| +|HTSlib/1.15.1-GCC-11.3.0|x|x|x|x|x|x| +|HTSlib/1.14-GCC-11.2.0|x|x|x|x|x|x| +|HTSlib/1.12-GCC-10.3.0|x|x|x|-|x|x| +|HTSlib/1.12-GCC-10.2.0|-|x|x|-|x|x| +|HTSlib/1.11-GCC-10.2.0|x|x|x|x|x|x| +|HTSlib/1.10.2-iccifort-2019.5.281|-|x|x|-|x|x| +|HTSlib/1.10.2-GCC-9.3.0|-|x|x|-|x|x| +|HTSlib/1.10.2-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSplotter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSplotter.md index 3a761416849a..a4fce7e20b71 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HTSplotter.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HTSplotter.md @@ -6,6 +6,10 @@ hide: HTSplotter ========== + +HTSplotter allows an end-to-end data processing and analysis of chemical and genetic in vitroperturbation screens. + +https://github.com/CBIGR/HTSplotter # Available modules @@ -17,9 +21,22 @@ To start using HTSplotter, load one of these modules using a `module load` comma module load HTSplotter/2.11-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HTSplotter/2.11-foss-2022b|x|x|x|x|x|x| +|HTSplotter/0.15-foss-2022a|x|x|x|x|x|x| + + +### HTSplotter/2.11-foss-2022b + +This is a list of extensions included in the module: + +HTSplotter-2.11, minio-7.1.13, pypdf-3.6.0, PyPDF2-3.0.1, PyPDF3-1.0.6 + +### HTSplotter/0.15-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HTSplotter/2.11-foss-2022b|x|x|x|x|x|x|x|x| -|HTSplotter/0.15-foss-2022a|x|x|x|x|x|x|x|x| +HTSplotter-0.15, minio-7.1.13, pypdf-3.4.1, PyPDF2-3.0.1, PyPDF3-1.0.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Hadoop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Hadoop.md index e6bbe3a8f8b1..7eda241ea9af 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Hadoop.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Hadoop.md @@ -6,6 +6,10 @@ hide: Hadoop ====== + +Hadoop MapReduce by Cloudera + +https://archive.cloudera.com/cdh5/cdh/5/ # Available modules @@ -17,10 +21,10 @@ To start using Hadoop, load one of these modules using a `module load` command l module load Hadoop/2.10.0-GCCcore-10.2.0-native-Java-1.8 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Hadoop/2.10.0-GCCcore-10.2.0-native-Java-1.8|-|-|x|-|x|-|-|-| -|Hadoop/2.10.0-GCCcore-10.2.0-native|-|x|-|-|-|-|x|-| -|Hadoop/2.10.0-GCCcore-8.3.0-native|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Hadoop/2.10.0-GCCcore-10.2.0-native-Java-1.8|-|-|x|-|x|-| +|Hadoop/2.10.0-GCCcore-10.2.0-native|-|x|-|-|-|-| +|Hadoop/2.10.0-GCCcore-8.3.0-native|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HarfBuzz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HarfBuzz.md index b06261989027..e1d321e1f2fa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HarfBuzz.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HarfBuzz.md @@ -6,6 +6,10 @@ hide: HarfBuzz ======== + +HarfBuzz is an OpenType text shaping engine. + +https://www.freedesktop.org/wiki/Software/HarfBuzz # Available modules @@ -14,17 +18,18 @@ The overview below shows which HarfBuzz installations are available per HPC-UGen To start using HarfBuzz, load one of these modules using a `module load` command like: ```shell -module load HarfBuzz/5.3.1-GCCcore-12.2.0 +module load HarfBuzz/5.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HarfBuzz/5.3.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|HarfBuzz/4.2.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|HarfBuzz/2.8.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|HarfBuzz/2.8.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|HarfBuzz/2.6.7-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|HarfBuzz/2.6.4-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|HarfBuzz/2.6.4-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HarfBuzz/5.3.1-GCCcore-12.3.0|x|x|x|x|x|x| +|HarfBuzz/5.3.1-GCCcore-12.2.0|x|x|x|x|x|x| +|HarfBuzz/4.2.1-GCCcore-11.3.0|x|x|x|x|x|x| +|HarfBuzz/2.8.2-GCCcore-11.2.0|x|x|x|x|x|x| +|HarfBuzz/2.8.1-GCCcore-10.3.0|x|x|x|x|x|x| +|HarfBuzz/2.6.7-GCCcore-10.2.0|x|x|x|x|x|x| +|HarfBuzz/2.6.4-GCCcore-9.3.0|-|x|x|-|x|x| +|HarfBuzz/2.6.4-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HiCExplorer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HiCExplorer.md index afd7a134ffe2..e8ab92e2e89f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HiCExplorer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HiCExplorer.md @@ -6,6 +6,10 @@ hide: HiCExplorer =========== + +HiCexplorer addresses the common tasks of Hi-C analysis from processing to visualization. + +http://hicexplorer.readthedocs.org/ # Available modules @@ -17,8 +21,15 @@ To start using HiCExplorer, load one of these modules using a `module load` comm module load HiCExplorer/3.7.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HiCExplorer/3.7.2-foss-2022a|x|x|x|x|x|x| + + +### HiCExplorer/3.7.2-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HiCExplorer/3.7.2-foss-2022a|x|x|x|x|x|x|x|x| +cleanlab-2.2.0, fit-nbinom-1.1, hic2cool-0.8.3, HiCExplorer-3.7.2, intervaltree-3.1.0, termcolor-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HiCMatrix.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HiCMatrix.md index 08d5002bf116..24e1b9db2add 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HiCMatrix.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HiCMatrix.md @@ -6,6 +6,10 @@ hide: HiCMatrix ========= + +This library implements the central class of HiCExplorer to manage Hi-C interaction matrices. + +https://github.com/deeptools/HiCMatrix # Available modules @@ -17,8 +21,15 @@ To start using HiCMatrix, load one of these modules using a `module load` comman module load HiCMatrix/17-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HiCMatrix/17-foss-2022a|x|x|x|x|x|x| + + +### HiCMatrix/17-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HiCMatrix/17-foss-2022a|x|x|x|x|x|x|x|x| +HiCMatrix-17, intervaltree-3.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HighFive.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HighFive.md new file mode 100644 index 000000000000..c9e67ebef72b --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HighFive.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +HighFive +======== + + +HighFive is a modern header-only C++11 friendly interface for libhdf5. + +https://github.com/BlueBrain/HighFive +# Available modules + + +The overview below shows which HighFive installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using HighFive, load one of these modules using a `module load` command like: + +```shell +module load HighFive/2.7.1-gompi-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HighFive/2.7.1-gompi-2023a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Highway.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Highway.md index f1aeb3b43737..ee1f646dbcbb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Highway.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Highway.md @@ -6,6 +6,10 @@ hide: Highway ======= + +Highway is a C++ library for SIMD (Single Instruction, Multiple Data), i.e. applying the sameoperation to 'lanes'. + +https://github.com/google/highway # Available modules @@ -14,13 +18,14 @@ The overview below shows which Highway installations are available per HPC-UGent To start using Highway, load one of these modules using a `module load` command like: ```shell -module load Highway/1.0.4-GCCcore-11.3.0 +module load Highway/1.0.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Highway/1.0.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Highway/1.0.3-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Highway/1.0.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Highway/1.0.4-GCCcore-12.3.0|x|x|x|x|x|x| +|Highway/1.0.4-GCCcore-11.3.0|x|x|x|x|x|x| +|Highway/1.0.3-GCCcore-12.2.0|x|x|x|x|x|x| +|Highway/1.0.3-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Horovod.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Horovod.md index 7859043b1bce..afee22d6699e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Horovod.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Horovod.md @@ -6,6 +6,10 @@ hide: Horovod ======= + +Horovod is a distributed training framework for TensorFlow. + +https://github.com/uber/horovod # Available modules @@ -17,12 +21,43 @@ To start using Horovod, load one of these modules using a `module load` command module load Horovod/0.23.0-fosscuda-2020b-TensorFlow-2.5.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Horovod/0.23.0-fosscuda-2020b-TensorFlow-2.5.0|x|-|-|-|x|-| +|Horovod/0.23.0-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0|x|-|-|-|-|-| +|Horovod/0.22.0-fosscuda-2020b-PyTorch-1.8.1|x|-|-|-|-|-| +|Horovod/0.21.3-fosscuda-2020b-PyTorch-1.7.1|x|-|-|-|x|-| +|Horovod/0.21.1-fosscuda-2020b-TensorFlow-2.4.1|x|-|-|-|x|-| + + +### Horovod/0.23.0-fosscuda-2020b-TensorFlow-2.5.0 + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, horovod-0.23.0 + +### Horovod/0.23.0-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0 + +This is a list of extensions included in the module: + +cloudpickle-2.0.0, horovod-0.23.0 + +### Horovod/0.22.0-fosscuda-2020b-PyTorch-1.8.1 + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, horovod-0.22.0 + +### Horovod/0.21.3-fosscuda-2020b-PyTorch-1.7.1 + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, horovod-0.21.3 + +### Horovod/0.21.1-fosscuda-2020b-TensorFlow-2.4.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Horovod/0.23.0-fosscuda-2020b-TensorFlow-2.5.0|x|-|-|-|x|-|-|-| -|Horovod/0.23.0-foss-2021a-CUDA-11.3.1-PyTorch-1.10.0|x|-|-|-|-|-|-|-| -|Horovod/0.22.0-fosscuda-2020b-PyTorch-1.8.1|x|-|-|-|-|-|-|-| -|Horovod/0.21.3-fosscuda-2020b-PyTorch-1.7.1|x|-|-|-|x|-|-|-| -|Horovod/0.21.1-fosscuda-2020b-TensorFlow-2.4.1|x|-|-|-|x|-|-|-| +cloudpickle-1.5.0, horovod-0.21.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/HyPo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/HyPo.md index 4e20128845af..0581c2f7a025 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/HyPo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/HyPo.md @@ -6,6 +6,10 @@ hide: HyPo ==== + +HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies + +https://github.com/kensung-lab/hypo # Available modules @@ -17,8 +21,8 @@ To start using HyPo, load one of these modules using a `module load` command lik module load HyPo/1.0.3-GCC-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|HyPo/1.0.3-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|HyPo/1.0.3-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Hybpiper.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Hybpiper.md index 221a59049578..d080272d5ba8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Hybpiper.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Hybpiper.md @@ -6,6 +6,10 @@ hide: Hybpiper ======== + +HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts/modules that wrap and connect bioinformatics tools in order to extract target sequences from high-throughput DNA sequencing reads. + +https://github.com/mossmatters/HybPiper # Available modules @@ -17,8 +21,15 @@ To start using Hybpiper, load one of these modules using a `module load` command module load Hybpiper/2.1.6-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Hybpiper/2.1.6-foss-2022b|x|x|x|x|x|x| + + +### Hybpiper/2.1.6-foss-2022b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Hybpiper/2.1.6-foss-2022b|x|x|x|x|x|x|x|x| +Hybpiper-2.1.6, Pebble-5.0.3, progressbar2-4.2.0, python-utils-3.7.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Hydra.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Hydra.md index 38b5f1a113d8..5d0a2206ae80 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Hydra.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Hydra.md @@ -6,6 +6,10 @@ hide: Hydra ===== + +Hydra is an open-source Python framework that simplifies the development ofresearch and other complex applications. The key feature is the ability todynamically create a hierarchical configuration by composition and override itthrough config files and the command line. The name Hydra comes from itsability to run multiple similar jobs - much like a Hydra with multiple heads. + +https://hydra.cc/ # Available modules @@ -17,8 +21,15 @@ To start using Hydra, load one of these modules using a `module load` command li module load Hydra/1.1.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Hydra/1.1.1-GCCcore-10.3.0|x|x|x|-|x|x| + + +### Hydra/1.1.1-GCCcore-10.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Hydra/1.1.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +antlr4-python3-runtime-4.8, hydra-1.1.1, omegaconf-2.1.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Hyperopt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Hyperopt.md index b9b2da346082..b4a4705ff557 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Hyperopt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Hyperopt.md @@ -6,6 +6,10 @@ hide: Hyperopt ======== + +hyperopt is a Python library for optimizing over awkward search spaces with real-valued, discrete, and conditional dimensions. + +http://hyperopt.github.io/hyperopt/ # Available modules @@ -17,9 +21,22 @@ To start using Hyperopt, load one of these modules using a `module load` command module load Hyperopt/0.2.7-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Hyperopt/0.2.7-foss-2022a|x|x|x|x|x|x| +|Hyperopt/0.2.7-foss-2021a|x|x|x|-|x|x| + + +### Hyperopt/0.2.7-foss-2022a + +This is a list of extensions included in the module: + +cloudpickle-2.2.1, hyperopt-0.2.7, py4j-0.10.9.7 + +### Hyperopt/0.2.7-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Hyperopt/0.2.7-foss-2022a|x|x|x|x|x|x|x|x| -|Hyperopt/0.2.7-foss-2021a|x|x|x|-|x|x|x|x| +cloudpickle-2.0.0, hyperopt-0.2.7, py4j-0.10.9.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Hypre.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Hypre.md index f2d9ddbfb6c5..139ecc1fd0d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Hypre.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Hypre.md @@ -6,6 +6,10 @@ hide: Hypre ===== + +Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences. + +https://computation.llnl.gov/projects/hypre-scalable-linear-solvers-multigrid-methods # Available modules @@ -17,14 +21,14 @@ To start using Hypre, load one of these modules using a `module load` command li module load Hypre/2.25.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Hypre/2.25.0-foss-2022a|x|x|x|-|x|x|x|x| -|Hypre/2.24.0-intel-2021b|x|x|x|x|x|x|x|x| -|Hypre/2.21.0-foss-2021a|-|x|x|-|x|x|x|x| -|Hypre/2.20.0-foss-2020b|-|x|x|x|x|x|x|x| -|Hypre/2.18.2-intel-2019b|-|x|x|-|x|x|-|x| -|Hypre/2.18.2-foss-2020a|-|x|x|-|x|x|x|x| -|Hypre/2.18.2-foss-2019b|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Hypre/2.25.0-foss-2022a|x|x|x|x|x|x| +|Hypre/2.24.0-intel-2021b|x|x|x|x|x|x| +|Hypre/2.21.0-foss-2021a|-|x|x|-|x|x| +|Hypre/2.20.0-foss-2020b|-|x|x|x|x|x| +|Hypre/2.18.2-intel-2019b|-|x|x|-|x|x| +|Hypre/2.18.2-foss-2020a|-|x|x|-|x|x| +|Hypre/2.18.2-foss-2019b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ICU.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ICU.md index 48dd818059f8..c48cc2eb7e99 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ICU.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ICU.md @@ -6,6 +6,10 @@ hide: ICU === + +ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications. + +https://icu-project.org/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which ICU installations are available per HPC-UGent Tie To start using ICU, load one of these modules using a `module load` command like: ```shell -module load ICU/72.1-GCCcore-12.2.0 +module load ICU/73.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ICU/72.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|ICU/71.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|ICU/69.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|ICU/69.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|ICU/67.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|ICU/66.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|ICU/64.2-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ICU/73.2-GCCcore-12.3.0|x|x|x|x|x|x| +|ICU/72.1-GCCcore-12.2.0|x|x|x|x|x|x| +|ICU/71.1-GCCcore-11.3.0|x|x|x|x|x|x| +|ICU/69.1-GCCcore-11.2.0|x|x|x|x|x|x| +|ICU/69.1-GCCcore-10.3.0|x|x|x|x|x|x| +|ICU/67.1-GCCcore-10.2.0|x|x|x|x|x|x| +|ICU/66.1-GCCcore-9.3.0|-|x|x|-|x|x| +|ICU/64.2-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IDBA-UD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IDBA-UD.md index 5de7cd29f33a..c5b49345a25a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IDBA-UD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IDBA-UD.md @@ -6,6 +6,10 @@ hide: IDBA-UD ======= + +IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short ReadsSequencing data with Highly Uneven Sequencing Depth. It is an extension of IDBA algorithm.IDBA-UD also iterates from small k to a large k. In each iteration, short and low-depthcontigs are removed iteratively with cutoff threshold from low to high to reduce the errorsin low-depth and high-depth regions. Paired-end reads are aligned to contigs and assembledlocally to generate some missing k-mers in low-depth regions. With these technologies, IDBA-UDcan iterate k value of de Bruijn graph to a very large value with less gaps and less branchesto form long contigs in both low-depth and high-depth regions. + +https://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/ # Available modules @@ -17,9 +21,9 @@ To start using IDBA-UD, load one of these modules using a `module load` command module load IDBA-UD/1.1.3-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|IDBA-UD/1.1.3-GCC-11.2.0|x|x|x|-|x|x|x|x| -|IDBA-UD/1.1.3-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|IDBA-UD/1.1.3-GCC-11.2.0|x|x|x|-|x|x| +|IDBA-UD/1.1.3-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IGMPlot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IGMPlot.md index 720075adf287..78764dbab566 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IGMPlot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IGMPlot.md @@ -6,6 +6,10 @@ hide: IGMPlot ======= + +IGMPlot is a free open-source program developed to identify molecular interactions and prepare data to build 2D and 3D representations of them in the molecular environment. + +http://igmplot.univ-reims.fr # Available modules @@ -17,9 +21,9 @@ To start using IGMPlot, load one of these modules using a `module load` command module load IGMPlot/2.4.2-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|IGMPlot/2.4.2-iccifort-2019.5.281|-|x|-|-|-|-|-|-| -|IGMPlot/2.4.2-GCC-8.3.0|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|IGMPlot/2.4.2-iccifort-2019.5.281|-|x|-|-|-|-| +|IGMPlot/2.4.2-GCC-8.3.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IGV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IGV.md index 02499f4da381..e87c3428d99c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IGV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IGV.md @@ -6,6 +6,10 @@ hide: IGV === + +This package contains command line utilities for preprocessing, computing feature count density (coverage), sorting, and indexing data files. + +https://www.broadinstitute.org/software/igv/ # Available modules @@ -17,9 +21,9 @@ To start using IGV, load one of these modules using a `module load` command like module load IGV/2.9.4-Java-11 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|IGV/2.9.4-Java-11|-|x|x|-|x|x|x|x| -|IGV/2.8.0-Java-11|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|IGV/2.9.4-Java-11|-|x|x|-|x|x| +|IGV/2.8.0-Java-11|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IOR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IOR.md index a84b2bea4679..c3f819f7621d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IOR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IOR.md @@ -6,6 +6,10 @@ hide: IOR === + +The IOR software is used for benchmarking parallel file systems using POSIX, MPIIO, or HDF5 interfaces. + +https://github.com/IOR-LANL/ior # Available modules @@ -17,8 +21,8 @@ To start using IOR, load one of these modules using a `module load` command like module load IOR/3.2.1-gompi-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|IOR/3.2.1-gompi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|IOR/3.2.1-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IPython.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IPython.md index b3b54d9b85e4..a348d2cf609a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IPython.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IPython.md @@ -6,6 +6,10 @@ hide: IPython ======= + +IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing. + +https://ipython.org/index.html # Available modules @@ -14,18 +18,81 @@ The overview below shows which IPython installations are available per HPC-UGent To start using IPython, load one of these modules using a `module load` command like: ```shell -module load IPython/8.5.0-GCCcore-11.3.0 +module load IPython/8.14.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|IPython/8.5.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|IPython/7.26.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|IPython/7.25.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|IPython/7.18.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|IPython/7.15.0-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|IPython/7.15.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|IPython/7.9.0-intel-2019b-Python-3.7.4|-|x|-|-|-|x|-|x| -|IPython/7.9.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|IPython/8.14.0-GCCcore-12.3.0|x|x|x|x|x|x| +|IPython/8.14.0-GCCcore-12.2.0|x|x|x|x|x|x| +|IPython/8.5.0-GCCcore-11.3.0|x|x|x|x|x|x| +|IPython/7.26.0-GCCcore-11.2.0|x|x|x|x|x|x| +|IPython/7.25.0-GCCcore-10.3.0|x|x|x|x|x|x| +|IPython/7.18.1-GCCcore-10.2.0|x|x|x|x|x|x| +|IPython/7.15.0-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|IPython/7.15.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|IPython/7.9.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|IPython/7.9.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### IPython/8.14.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +%(namelower)s-%(version)s, asttokens-2.2.1, backcall-0.2.0, executing-1.2.0, jedi-0.19.0, matplotlib-inline-0.1.6, parso-0.8.3, pickleshare-0.7.5, prompt_toolkit-3.0.39, pure_eval-0.2.2, stack_data-0.6.2, traitlets-5.9.0 + +### IPython/8.14.0-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +asttokens-2.2.1, backcall-0.2.0, executing-1.2.0, ipython-8.14.0, jedi-0.18.2, matplotlib-inline-0.1.6, parso-0.8.3, pickleshare-0.7.5, prompt_toolkit-3.0.39, pure_eval-0.2.2, stack_data-0.6.2, traitlets-5.9.0 + +### IPython/8.5.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +argon2-cffi-20.1.0, asttokens-2.0.8, async_generator-1.10, backcall-0.2.0, bleach-5.0.1, debugpy-1.4.1, defusedxml-0.7.1, deprecation-2.1.0, entrypoints-0.4, executing-1.0.0, fastjsonschema-2.16.1, ipykernel-6.13.0, ipython-8.5.0, ipython_genutils-0.2.0, ipywidgets-7.6.3, jedi-0.18.1, jupyter_client-7.3.1, jupyter_core-4.10.0, jupyter_packaging-0.12.0, jupyterlab_pygments-0.1.2, jupyterlab_widgets-3.0.3, matplotlib-inline-0.1.2, mistune-0.8.1, nbclient-0.6.3, nbconvert-6.5.3, nbformat-5.4.0, nest_asyncio-1.5.5, notebook-6.4.0, pandocfilters-1.5.0, parso-0.8.3, pickleshare-0.7.5, prometheus_client-0.11.0, prompt_toolkit-3.0.31, pure_eval-0.2.2, pyzmq-23.2.1, Send2Trash-1.8.0, stack_data-0.5.0, terminado-0.13.0, testpath-0.6.0, tinycss2-1.1.1, tornado-6.2, traitlets-5.2.0, widgetsnbextension-3.5.1 + +### IPython/7.26.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +argon2-cffi-20.1.0, async_generator-1.10, backcall-0.2.0, bleach-4.0.0, debugpy-1.4.1, defusedxml-0.7.1, deprecation-2.1.0, entrypoints-0.3, ipykernel-6.0.3, ipython-7.26.0, ipython_genutils-0.2.0, ipywidgets-7.6.3, jedi-0.18.0, jupyter_client-6.1.12, jupyter_core-4.7.1, jupyter_packaging-0.10.4, jupyterlab_pygments-0.1.2, jupyterlab_widgets-1.0.0, matplotlib-inline-0.1.2, mistune-0.8.4, nbclient-0.5.3, nbconvert-6.4.0, nbformat-5.1.3, nest_asyncio-1.5.1, notebook-6.4.0, pandocfilters-1.4.3, parso-0.8.2, pickleshare-0.7.5, prometheus_client-0.11.0, prompt_toolkit-3.0.19, pyzmq-22.2.1, Send2Trash-1.8.0, terminado-0.10.1, testpath-0.5.0, tornado-6.1, traitlets-5.0.5, widgetsnbextension-3.5.1 + +### IPython/7.25.0-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +argon2-cffi-20.1.0, async_generator-1.10, backcall-0.2.0, bleach-3.3.0, debugpy-1.3.0, defusedxml-0.7.1, deprecation-2.1.0, entrypoints-0.3, ipykernel-6.0.0, ipython-7.25.0, ipython_genutils-0.2.0, ipywidgets-7.6.3, jedi-0.18.0, jupyter_client-6.1.12, jupyter_core-4.7.1, jupyter_packaging-0.10.3, jupyterlab_pygments-0.1.2, jupyterlab_widgets-1.0.0, matplotlib-inline-0.1.2, mistune-0.8.4, nbclient-0.5.3, nbconvert-6.4.0, nbformat-5.1.3, nest_asyncio-1.5.1, notebook-6.4.0, pandocfilters-1.4.3, parso-0.8.2, pickleshare-0.7.5, prometheus_client-0.11.0, prompt_toolkit-3.0.19, pyzmq-22.1.0, Send2Trash-1.7.1, terminado-0.10.1, testpath-0.5.0, tornado-6.1, traitlets-5.0.5, widgetsnbextension-3.5.1 + +### IPython/7.18.1-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +argon2-cffi-20.1.0, async_generator-1.10, backcall-0.2.0, bleach-3.2.1, defusedxml-0.6.0, entrypoints-0.3, ipykernel-5.3.4, ipython-7.18.1, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.17.2, jupyter_client-6.1.7, jupyter_core-4.6.3, jupyterlab_pygments-0.1.2, mistune-0.8.4, nbclient-0.5.0, nbconvert-6.0.7, nbformat-5.0.7, nest_asyncio-1.4.1, notebook-6.1.4, pandocfilters-1.4.2, parso-0.7.1, pickleshare-0.7.5, prometheus_client-0.8.0, prompt_toolkit-3.0.7, pyzmq-19.0.2, Send2Trash-1.5.0, terminado-0.9.1, testpath-0.4.4, tornado-6.0.4, traitlets-5.0.4, widgetsnbextension-3.5.1 + +### IPython/7.15.0-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +backcall-0.1.0, bleach-3.1.5, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.3.0, ipython-7.15.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.17.0, jsonschema-3.2.0, jupyter_client-6.1.3, jupyter_contrib_core-0.3.3, jupyter_core-4.6.3, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-5.0.6, notebook-6.0.3, pandocfilters-1.4.2, parso-0.7.0, pexpect-4.8.0, pickleshare-0.7.5, prometheus_client-0.8.0, prompt_toolkit-3.0.5, ptyprocess-0.6.0, pyrsistent-0.16.0, pyzmq-19.0.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.4, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.9, webencodings-0.5.1, widgetsnbextension-3.5.1 + +### IPython/7.15.0-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +backcall-0.1.0, bleach-3.1.5, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.3.0, ipython-7.15.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.17.0, jsonschema-3.2.0, jupyter_client-6.1.3, jupyter_contrib_core-0.3.3, jupyter_core-4.6.3, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-5.0.6, notebook-6.0.3, pandocfilters-1.4.2, parso-0.7.0, pexpect-4.8.0, pickleshare-0.7.5, prometheus_client-0.8.0, prompt_toolkit-3.0.5, ptyprocess-0.6.0, pyrsistent-0.16.0, pyzmq-19.0.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.4, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.9, webencodings-0.5.1, widgetsnbextension-3.5.1 + +### IPython/7.9.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +backcall-0.1.0, bleach-3.1.0, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.1.3, ipython-7.9.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.15.1, jsonschema-3.1.1, jupyter_client-5.3.4, jupyter_contrib_core-0.3.3, jupyter_core-4.6.1, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-4.4.0, notebook-6.0.2, pandocfilters-1.4.2, parso-0.5.1, pexpect-4.7.0, pickleshare-0.7.5, prometheus_client-0.7.1, prompt_toolkit-2.0.10, ptyprocess-0.6.0, pyrsistent-0.15.5, pyzmq-18.1.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.3, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.7, webencodings-0.5.1, widgetsnbextension-3.5.1 + +### IPython/7.9.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +backcall-0.1.0, bleach-3.1.0, defusedxml-0.6.0, entrypoints-0.3, html5lib-1.0.1, ipykernel-5.1.3, ipython-7.9.0, ipython_genutils-0.2.0, ipywidgets-7.5.1, jedi-0.15.1, jsonschema-3.1.1, jupyter_client-5.3.4, jupyter_contrib_core-0.3.3, jupyter_core-4.6.1, jupyter_nbextensions_configurator-0.4.1, mistune-0.8.4, nbconvert-5.6.1, nbformat-4.4.0, notebook-6.0.2, pandocfilters-1.4.2, parso-0.5.1, pexpect-4.7.0, pickleshare-0.7.5, prometheus_client-0.7.1, prompt_toolkit-2.0.10, ptyprocess-0.6.0, pyrsistent-0.15.5, pyzmq-18.1.1, Send2Trash-1.5.0, simplegeneric-0.8.1, terminado-0.8.3, testpath-0.4.4, tornado-6.0.3, traitlets-4.3.3, vcversioner-2.16.0.0, wcwidth-0.1.7, webencodings-0.5.1, widgetsnbextension-3.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md index 8eb400691d8a..f6be9eed224a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IQ-TREE.md @@ -6,6 +6,10 @@ hide: IQ-TREE ======= + +Efficient phylogenomic software by maximum likelihood + +http://www.iqtree.org/ # Available modules @@ -17,12 +21,12 @@ To start using IQ-TREE, load one of these modules using a `module load` command module load IQ-TREE/2.2.2.6-gompi-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|IQ-TREE/2.2.2.6-gompi-2022b|x|x|x|x|x|x|x|x| -|IQ-TREE/2.2.2.6-gompi-2022a|x|x|x|x|x|x|x|x| -|IQ-TREE/2.2.2.3-gompi-2022a|x|x|x|x|x|x|x|x| -|IQ-TREE/2.2.1-gompi-2021b|x|x|x|-|x|x|x|x| -|IQ-TREE/1.6.12-intel-2019b|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|IQ-TREE/2.2.2.6-gompi-2022b|x|x|x|x|x|x| +|IQ-TREE/2.2.2.6-gompi-2022a|x|x|x|x|x|x| +|IQ-TREE/2.2.2.3-gompi-2022a|x|x|x|x|x|x| +|IQ-TREE/2.2.1-gompi-2021b|x|x|x|-|x|x| +|IQ-TREE/1.6.12-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IRkernel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IRkernel.md index f927a3b39e18..acd080c2b556 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IRkernel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IRkernel.md @@ -6,6 +6,10 @@ hide: IRkernel ======== + +The R kernel for the 'Jupyter' environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network. + +https://irkernel.github.io # Available modules @@ -17,9 +21,22 @@ To start using IRkernel, load one of these modules using a `module load` command module load IRkernel/1.2-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|IRkernel/1.2-foss-2021a-R-4.1.0|-|x|x|-|x|x| +|IRkernel/1.1-foss-2019b-R-3.6.2-Python-3.7.4|-|x|x|-|x|x| + + +### IRkernel/1.2-foss-2021a-R-4.1.0 + +This is a list of extensions included in the module: + +IRdisplay-1.0, IRkernel-1.2, pbdZMQ-0.3-5, repr-1.1.3 + +### IRkernel/1.1-foss-2019b-R-3.6.2-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|IRkernel/1.2-foss-2021a-R-4.1.0|-|x|x|-|x|x|x|x| -|IRkernel/1.1-foss-2019b-R-3.6.2-Python-3.7.4|-|x|x|-|x|x|-|x| +IRdisplay-0.7.0, IRkernel-1.1, pbdZMQ-0.3-3, repr-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ISA-L.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ISA-L.md index 2f9f9a18cec9..e65efe3bc9da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ISA-L.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ISA-L.md @@ -6,6 +6,10 @@ hide: ISA-L ===== + +Intelligent Storage Acceleration Library + +https://github.com/intel/isa-l # Available modules @@ -17,11 +21,11 @@ To start using ISA-L, load one of these modules using a `module load` command li module load ISA-L/2.30.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ISA-L/2.30.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|ISA-L/2.30.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|ISA-L/2.30.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|ISA-L/2.30.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ISA-L/2.30.0-GCCcore-11.3.0|x|x|x|x|x|x| +|ISA-L/2.30.0-GCCcore-11.2.0|x|x|x|-|x|x| +|ISA-L/2.30.0-GCCcore-10.3.0|x|x|x|-|x|x| +|ISA-L/2.30.0-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ITK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ITK.md index a4aea5bc89f7..2f3646acd466 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ITK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ITK.md @@ -6,6 +6,10 @@ hide: ITK === + +Insight Segmentation and Registration Toolkit (ITK) provides an extensive suite of software tools for registering and segmenting multidimensional imaging data. + +https://itk.org # Available modules @@ -17,13 +21,13 @@ To start using ITK, load one of these modules using a `module load` command like module load ITK/5.2.1-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ITK/5.2.1-fosscuda-2020b|x|-|-|-|x|-|-|-| -|ITK/5.2.1-foss-2022a|x|x|x|x|x|x|x|x| -|ITK/5.2.1-foss-2020b|-|x|x|x|x|x|x|x| -|ITK/5.1.2-fosscuda-2020b|-|-|-|-|x|-|-|-| -|ITK/5.0.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|ITK/4.13.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ITK/5.2.1-fosscuda-2020b|x|-|-|-|x|-| +|ITK/5.2.1-foss-2022a|x|x|x|x|x|x| +|ITK/5.2.1-foss-2020b|-|x|x|x|x|x| +|ITK/5.1.2-fosscuda-2020b|-|-|-|-|x|-| +|ITK/5.0.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|ITK/4.13.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ImageMagick.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ImageMagick.md index 976fc1176636..2612b46da0db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ImageMagick.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ImageMagick.md @@ -6,6 +6,10 @@ hide: ImageMagick =========== + +ImageMagick is a software suite to create, edit, compose, or convert bitmap images + +https://www.imagemagick.org/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which ImageMagick installations are available per HPC-U To start using ImageMagick, load one of these modules using a `module load` command like: ```shell -module load ImageMagick/7.1.0-53-GCCcore-12.2.0 +module load ImageMagick/7.1.1-15-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ImageMagick/7.1.0-53-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|ImageMagick/7.1.0-37-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|ImageMagick/7.1.0-4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|ImageMagick/7.0.11-14-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|ImageMagick/7.0.10-35-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|ImageMagick/7.0.10-1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|ImageMagick/7.0.9-5-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ImageMagick/7.1.1-15-GCCcore-12.3.0|x|x|x|x|x|x| +|ImageMagick/7.1.0-53-GCCcore-12.2.0|x|x|x|x|x|x| +|ImageMagick/7.1.0-37-GCCcore-11.3.0|x|x|x|x|x|x| +|ImageMagick/7.1.0-4-GCCcore-11.2.0|x|x|x|x|x|x| +|ImageMagick/7.0.11-14-GCCcore-10.3.0|x|x|x|x|x|x| +|ImageMagick/7.0.10-35-GCCcore-10.2.0|x|x|x|x|x|x| +|ImageMagick/7.0.10-1-GCCcore-9.3.0|-|x|x|-|x|x| +|ImageMagick/7.0.9-5-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Imath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Imath.md index a1c39e62b8e9..f090874acbb7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Imath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Imath.md @@ -6,6 +6,10 @@ hide: Imath ===== + +Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics + +https://imath.readthedocs.io/en/latest/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which Imath installations are available per HPC-UGent T To start using Imath, load one of these modules using a `module load` command like: ```shell -module load Imath/3.1.6-GCCcore-12.2.0 +module load Imath/3.1.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Imath/3.1.6-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Imath/3.1.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Imath/3.1.7-GCCcore-12.3.0|x|x|x|x|x|x| +|Imath/3.1.6-GCCcore-12.2.0|x|x|x|x|x|x| +|Imath/3.1.5-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Inferelator.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Inferelator.md index 97be0a30d20b..7d29847ad8a4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Inferelator.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Inferelator.md @@ -6,6 +6,10 @@ hide: Inferelator =========== + +Inferelator 3.0 is a package for gene regulatory network inference that is based on regularized regression. + +https://github.com/flatironinstitute/inferelator # Available modules @@ -17,8 +21,15 @@ To start using Inferelator, load one of these modules using a `module load` comm module load Inferelator/0.6.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Inferelator/0.6.1-foss-2022a|x|x|x|x|x|x| + + +### Inferelator/0.6.1-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Inferelator/0.6.1-foss-2022a|x|x|x|x|x|x|x|x| +anndata-0.8.0, inferelator-0.6.1, natsort-8.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Infernal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Infernal.md index 6e10d2869f7e..e709de2f43f7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Infernal.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Infernal.md @@ -6,6 +6,10 @@ hide: Infernal ======== + +Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. + +http://eddylab.org/infernal/ # Available modules @@ -17,8 +21,8 @@ To start using Infernal, load one of these modules using a `module load` command module load Infernal/1.1.4-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Infernal/1.1.4-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Infernal/1.1.4-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan.md index 8e9166b3f0d2..f6c58e7626b2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/InterProScan.md @@ -6,6 +6,10 @@ hide: InterProScan ============ + +InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines different protein signature recognition methods into one resource. + +https://www.ebi.ac.uk/interpro/ # Available modules @@ -17,9 +21,9 @@ To start using InterProScan, load one of these modules using a `module load` com module load InterProScan/5.62-94.0-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|InterProScan/5.62-94.0-foss-2022b|x|x|x|x|x|x|x|x| -|InterProScan/5.52-86.0-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|InterProScan/5.62-94.0-foss-2022b|x|x|x|x|x|x| +|InterProScan/5.52-86.0-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IonQuant.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IonQuant.md new file mode 100644 index 000000000000..66b4d7f42b86 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IonQuant.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +IonQuant +======== + + +IonQuant is a fast and comprehensive tool for MS1 precursor intensity-based quantification for timsTOF PASEF DDA and non-timsTOF (e.g., Orbitrap) data. It enables label-free quantification with false discovery (FDR) controlled match-between-runs (MBR). It can also be used for quantification in labelling-based experiments such as those involving SILAC, dimethyl, or similar labelling strategies. IonQuant is available as part of FragPipe. + +https://ionquant.nesvilab.org/ +# Available modules + + +The overview below shows which IonQuant installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using IonQuant, load one of these modules using a `module load` command like: + +```shell +module load IonQuant/1.10.12-Java-11 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|IonQuant/1.10.12-Java-11|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IsoQuant.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IsoQuant.md index 050069fe9b71..4bfb4340780a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IsoQuant.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IsoQuant.md @@ -6,6 +6,10 @@ hide: IsoQuant ======== + +IsoQuant is a tool for the genome-based analysis of long RNA reads, such as PacBio or Oxford Nanopores. IsoQuant allows to reconstruct and quantify transcript models with high precision and decent recall. If the reference annotation is given, IsoQuant also assigns reads to the annotated isoforms based on their intron and exon structure. IsoQuant further performs annotated gene, isoform, exon and intron quantification. If reads are grouped (e.g. according to cell type), counts are reported according to the provided grouping. + +https://github.com/ablab/IsoQuant # Available modules @@ -17,8 +21,8 @@ To start using IsoQuant, load one of these modules using a `module load` command module load IsoQuant/3.3.0-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|IsoQuant/3.3.0-foss-2022b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|IsoQuant/3.3.0-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/IsoSeq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/IsoSeq.md index 35a0bfc5d66a..d5689cd7822f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/IsoSeq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/IsoSeq.md @@ -6,6 +6,10 @@ hide: IsoSeq ====== + +IsoSeq v3 contains the newest tools to identify transcripts in PacBio single-molecule sequencing data. Starting in SMRT Link v6.0.0, those tools power the IsoSeq GUI-based analysis application. A composable workflow of existing tools and algorithms, combined with a new clustering technique, allows to process the ever-increasing yield of PacBio machines with similar performance to IsoSeq versions 1 and 2. Starting with version 3.4, support for UMI and cell barcode based deduplication has been added. + +https://github.com/PacificBiosciences/ioseq3 # Available modules @@ -14,11 +18,12 @@ The overview below shows which IsoSeq installations are available per HPC-UGent To start using IsoSeq, load one of these modules using a `module load` command like: ```shell -module load IsoSeq/3.8.2-linux-x86_64 +module load IsoSeq/4.0.0-linux-x86_64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|IsoSeq/3.8.2-linux-x86_64|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|IsoSeq/4.0.0-linux-x86_64|x|x|x|x|x|x| +|IsoSeq/3.8.2-linux-x86_64|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JAGS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JAGS.md index 1d9008466524..a8739d971709 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JAGS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JAGS.md @@ -6,6 +6,10 @@ hide: JAGS ==== + +JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation + +http://mcmc-jags.sourceforge.net/ # Available modules @@ -14,13 +18,14 @@ The overview below shows which JAGS installations are available per HPC-UGent Ti To start using JAGS, load one of these modules using a `module load` command like: ```shell -module load JAGS/4.3.1-foss-2022a +module load JAGS/4.3.2-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|JAGS/4.3.1-foss-2022a|x|x|x|x|x|x|x|x| -|JAGS/4.3.0-foss-2021b|x|x|x|-|x|x|x|x| -|JAGS/4.3.0-foss-2020b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|JAGS/4.3.2-foss-2022b|x|x|x|x|x|x| +|JAGS/4.3.1-foss-2022a|x|x|x|x|x|x| +|JAGS/4.3.0-foss-2021b|x|x|x|-|x|x| +|JAGS/4.3.0-foss-2020b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JSON-GLib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JSON-GLib.md index 544b97214415..c425c58f7fa8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JSON-GLib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JSON-GLib.md @@ -6,6 +6,10 @@ hide: JSON-GLib ========= + +JSON-GLib implements a full JSON parser and generator using GLib and GObject, and integrates JSON with GLib data types. + +https://wiki.gnome.org/Projects/JsonGlib # Available modules @@ -17,8 +21,8 @@ To start using JSON-GLib, load one of these modules using a `module load` comman module load JSON-GLib/1.6.2-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|JSON-GLib/1.6.2-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|JSON-GLib/1.6.2-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Jansson.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Jansson.md index 120a71ee7bd9..29e8a51f96da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Jansson.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Jansson.md @@ -6,6 +6,10 @@ hide: Jansson ======= + +Jansson is a C library for encoding, decoding and manipulating JSON data. Its main features and design principles are: * Simple and intuitive API and data model * Comprehensive documentation * No dependencies on other libraries * Full Unicode support (UTF-8) * Extensive test suite + +https://www.digip.org/jansson/ # Available modules @@ -17,8 +21,8 @@ To start using Jansson, load one of these modules using a `module load` command module load Jansson/2.13.1-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Jansson/2.13.1-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Jansson/2.13.1-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JasPer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JasPer.md index 41c57d908822..31ba1ab22c0a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JasPer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JasPer.md @@ -6,6 +6,10 @@ hide: JasPer ====== + +The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard. + +https://www.ece.uvic.ca/~frodo/jasper/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which JasPer installations are available per HPC-UGent To start using JasPer, load one of these modules using a `module load` command like: ```shell -module load JasPer/4.0.0-GCCcore-12.2.0 +module load JasPer/4.0.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|JasPer/4.0.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|JasPer/2.0.33-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|JasPer/2.0.33-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|JasPer/2.0.28-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|JasPer/2.0.24-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|JasPer/2.0.14-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|JasPer/2.0.14-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|JasPer/4.0.0-GCCcore-12.3.0|x|x|x|x|x|x| +|JasPer/4.0.0-GCCcore-12.2.0|x|x|x|x|x|x| +|JasPer/2.0.33-GCCcore-11.3.0|x|x|x|x|x|x| +|JasPer/2.0.33-GCCcore-11.2.0|x|x|x|x|x|x| +|JasPer/2.0.28-GCCcore-10.3.0|x|x|x|x|x|x| +|JasPer/2.0.24-GCCcore-10.2.0|x|x|x|x|x|x| +|JasPer/2.0.14-GCCcore-9.3.0|-|x|x|-|x|x| +|JasPer/2.0.14-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md index f9d156a1301a..ea74a5d28e79 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Java.md @@ -14,23 +14,24 @@ The overview below shows which Java installations are available per HPC-UGent Ti To start using Java, load one of these modules using a `module load` command like: ```shell -module load Java/13.0.2 +module load Java/17.0.6 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Java/13.0.2|-|x|x|-|x|x|x|x| -|Java/13(@Java/13.0.2)|-|x|x|-|x|x|x|x| -|Java/11.0.18|x|-|-|x|x|-|-|-| -|Java/11.0.16|x|x|x|x|x|x|x|x| -|Java/11.0.2|x|x|x|-|x|x|x|x| -|Java/11(@Java/11.0.16)|-|-|-|x|-|-|-|-| -|Java/11(@Java/11.0.2)|x|x|x|-|x|x|x|x| -|Java/1.8.0_311|x|-|x|x|x|x|-|x| -|Java/1.8.0_281|-|-|-|-|-|-|x|-| -|Java/1.8.0_241|-|x|-|-|-|-|-|-| -|Java/1.8(@Java/1.8.0_311)|x|-|x|x|x|x|-|x| -|Java/1.8(@Java/1.8.0_281)|-|-|-|-|-|-|x|-| -|Java/1.8(@Java/1.8.0_241)|-|x|-|-|-|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Java/17.0.6|x|x|x|x|x|x| +|Java/17(@Java/17.0.6)|x|x|x|x|x|x| +|Java/13.0.2|-|x|x|-|x|x| +|Java/13(@Java/13.0.2)|-|x|x|-|x|x| +|Java/11.0.20|x|x|x|x|x|x| +|Java/11.0.18|x|-|-|x|x|-| +|Java/11.0.16|x|x|x|x|x|x| +|Java/11.0.2|x|x|x|-|x|x| +|Java/11(@Java/11.0.20)|x|x|x|x|x|x| +|Java/1.8.0_311|x|-|x|x|x|x| +|Java/1.8.0_241|-|x|-|-|-|-| +|Java/1.8.0_221|-|x|-|-|-|-| +|Java/1.8(@Java/1.8.0_311)|x|-|x|x|x|x| +|Java/1.8(@Java/1.8.0_241)|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Jellyfish.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Jellyfish.md index ffd5608a93fa..91c5779dce5a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Jellyfish.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Jellyfish.md @@ -6,6 +6,10 @@ hide: Jellyfish ========= + +Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. + +http://www.genome.umd.edu/jellyfish.html # Available modules @@ -17,9 +21,9 @@ To start using Jellyfish, load one of these modules using a `module load` comman module load Jellyfish/2.3.0-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Jellyfish/2.3.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|Jellyfish/2.3.0-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Jellyfish/2.3.0-GCC-11.3.0|x|x|x|x|x|x| +|Jellyfish/2.3.0-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JsonCpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JsonCpp.md index e31eb80cd793..b38df17a7f74 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JsonCpp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JsonCpp.md @@ -6,6 +6,10 @@ hide: JsonCpp ======= + +JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files. + +https://open-source-parsers.github.io/jsoncpp-docs/doxygen/index.html # Available modules @@ -14,16 +18,18 @@ The overview below shows which JsonCpp installations are available per HPC-UGent To start using JsonCpp, load one of these modules using a `module load` command like: ```shell -module load JsonCpp/1.9.5-GCCcore-11.3.0 +module load JsonCpp/1.9.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|JsonCpp/1.9.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|JsonCpp/1.9.4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|JsonCpp/1.9.4-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|JsonCpp/1.9.4-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|JsonCpp/1.9.4-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|JsonCpp/1.9.3-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|JsonCpp/1.9.5-GCCcore-12.3.0|x|x|x|x|x|x| +|JsonCpp/1.9.5-GCCcore-12.2.0|x|x|x|x|x|x| +|JsonCpp/1.9.5-GCCcore-11.3.0|x|x|x|x|x|x| +|JsonCpp/1.9.4-GCCcore-11.2.0|x|x|x|x|x|x| +|JsonCpp/1.9.4-GCCcore-10.3.0|x|x|x|x|x|x| +|JsonCpp/1.9.4-GCCcore-10.2.0|x|x|x|x|x|x| +|JsonCpp/1.9.4-GCCcore-9.3.0|-|x|x|-|x|x| +|JsonCpp/1.9.3-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Judy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Judy.md index 6855ed908807..dfaca67d54ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Judy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Judy.md @@ -6,6 +6,10 @@ hide: Judy ==== + +A C library that implements a dynamic array. + +http://judy.sourceforge.net/ # Available modules @@ -17,12 +21,12 @@ To start using Judy, load one of these modules using a `module load` command lik module load Judy/1.0.5-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Judy/1.0.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Judy/1.0.5-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Judy/1.0.5-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|Judy/1.0.5-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|Judy/1.0.5-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Judy/1.0.5-GCCcore-11.3.0|x|x|x|x|x|x| +|Judy/1.0.5-GCCcore-11.2.0|x|x|x|x|x|x| +|Judy/1.0.5-GCCcore-10.3.0|x|x|x|-|x|x| +|Judy/1.0.5-GCCcore-10.2.0|-|x|x|x|x|x| +|Judy/1.0.5-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Julia.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Julia.md index d8943fea833e..eb92ef3efd0d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Julia.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Julia.md @@ -6,6 +6,10 @@ hide: Julia ===== + +Julia is a high-level, high-performance dynamic programming language for numerical computing + +https://julialang.org # Available modules @@ -14,12 +18,13 @@ The overview below shows which Julia installations are available per HPC-UGent T To start using Julia, load one of these modules using a `module load` command like: ```shell -module load Julia/1.7.2-linux-x86_64 +module load Julia/1.9.3-linux-x86_64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Julia/1.7.2-linux-x86_64|x|x|x|x|x|x|x|x| -|Julia/1.6.2-linux-x86_64|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Julia/1.9.3-linux-x86_64|x|x|x|x|x|x| +|Julia/1.7.2-linux-x86_64|x|x|x|x|x|x| +|Julia/1.6.2-linux-x86_64|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterHub.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterHub.md new file mode 100644 index 000000000000..f5c9a39ec459 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterHub.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +JupyterHub +========== + + +JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs. + +https://jupyter.org +# Available modules + + +The overview below shows which JupyterHub installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using JupyterHub, load one of these modules using a `module load` command like: + +```shell +module load JupyterHub/4.0.1-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|JupyterHub/4.0.1-GCCcore-12.2.0|x|x|x|x|x|x| + + +### JupyterHub/4.0.1-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +alembic-1.11.1, async_generator-1.10, batchspawner-1.2.0-2a9eda0, certipy-0.1.3, greenlet-2.0.2, jupyter-telemetry-0.1.0, jupyterhub-4.0.1, jupyterhub-jwtauthenticator-v2-2.0.3, jupyterhub-ldapauthenticator-1.3.2, jupyterhub-nativeauthenticator-1.2.0, jupyterhub-simplespawner-0.1, jupyterhub-systemdspawner-1.0.1, ldap3-2.9.1, oauthlib-3.2.2, onetimepass-1.0.1, pamela-1.1.0, PyJWT-2.8.0, pyOpenSSL-23.2.0, ruamel.yaml-0.17.32, ruamel.yaml.clib-0.2.7, SQLAlchemy-2.0.19 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterLab.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterLab.md index 70dcd42dc169..57b5853f91db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterLab.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterLab.md @@ -6,6 +6,10 @@ hide: JupyterLab ========== + +JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook. + +https://jupyter.org/ # Available modules @@ -14,15 +18,60 @@ The overview below shows which JupyterLab installations are available per HPC-UG To start using JupyterLab, load one of these modules using a `module load` command like: ```shell -module load JupyterLab/3.5.0-GCCcore-11.3.0 +module load JupyterLab/4.0.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|JupyterLab/4.0.5-GCCcore-12.3.0|x|x|x|x|x|x| +|JupyterLab/4.0.3-GCCcore-12.2.0|x|x|x|x|x|x| +|JupyterLab/3.5.0-GCCcore-11.3.0|x|x|x|x|x|x| +|JupyterLab/3.1.6-GCCcore-11.2.0|x|x|x|-|x|x| +|JupyterLab/3.0.16-GCCcore-10.3.0|x|-|x|-|x|-| +|JupyterLab/2.2.8-GCCcore-10.2.0|x|x|x|x|x|x| +|JupyterLab/1.2.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### JupyterLab/4.0.5-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +async-lru-2.0.4, json5-0.9.14, jupyter-lsp-2.2.0, jupyterlab-4.0.5, jupyterlab_server-2.24.0 + +### JupyterLab/4.0.3-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +async-lru-2.0.3, attrs-23.1.0, hatchling-1.18.0, json5-0.9.14, jsonschema-4.18.4, jsonschema_specifications-2023.7.1, jupyter-lsp-2.2.0, jupyterlab-4.0.3, jupyterlab_server-2.23.0, referencing-0.30.0, rpds_py-0.9.2, trove-classifiers-2023.7.6 + +### JupyterLab/3.5.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +json5-0.9.10, jupyterlab-3.5.0, jupyterlab_server-2.13.0, nbclassic-0.4.8, notebook_shim-0.1.0 + +### JupyterLab/3.1.6-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +anyio-3.3.0, json5-0.9.6, jupyter_server-1.10.2, JupyterLab-3.1.6, jupyterlab_server-2.7.0, nbclassic-0.3.1, requests-unixsocket-0.2.0, sniffio-1.2.0, websocket-client-1.2.0 + +### JupyterLab/3.0.16-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +anyio-3.2.1, json5-0.9.6, jupyter_server-1.9.0, JupyterLab-3.0.16, jupyterlab_server-2.6.0, nbclassic-0.3.1, requests-unixsocket-0.2.0, sniffio-1.2.0, websocket-client-1.1.0 + +### JupyterLab/2.2.8-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +json5-0.9.5, JupyterLab-2.2.8, jupyterlab_server-1.2.0 + +### JupyterLab/1.2.5-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|JupyterLab/3.5.0-GCCcore-11.3.0|-|-|x|-|x|-|-|-| -|JupyterLab/3.1.6-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|JupyterLab/3.0.16-GCCcore-10.3.0|x|-|x|-|x|-|-|-| -|JupyterLab/2.2.8-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|JupyterLab/1.2.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +json5-0.8.5, JupyterLab-1.2.5, jupyterlab_server-1.0.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterNotebook.md b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterNotebook.md new file mode 100644 index 000000000000..1c8a5862fafa --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/JupyterNotebook.md @@ -0,0 +1,40 @@ +--- +hide: + - toc +--- + +JupyterNotebook +=============== + + +The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience. + +https://jupyter.org/ +# Available modules + + +The overview below shows which JupyterNotebook installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using JupyterNotebook, load one of these modules using a `module load` command like: + +```shell +module load JupyterNotebook/7.0.3-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|JupyterNotebook/7.0.3-GCCcore-12.2.0|x|x|x|x|x|x| +|JupyterNotebook/7.0.2-GCCcore-12.3.0|x|x|x|x|x|x| +|JupyterNotebook/6.4.12-SAGE-10.2|x|x|x|x|x|x| +|JupyterNotebook/6.4.12-SAGE-10.1|x|x|x|x|x|x| +|JupyterNotebook/6.4.12-SAGE-9.8|x|x|x|x|x|x| +|JupyterNotebook/6.4.0-GCCcore-11.3.0-IPython-8.5.0|x|x|x|x|x|x| +|JupyterNotebook/6.4.0-GCCcore-11.2.0-IPython-7.26.0|x|x|x|x|x|x| +|JupyterNotebook/6.4.0-GCCcore-10.3.0-IPython-7.25.0|x|x|x|x|x|x| +|JupyterNotebook/6.1.4-GCCcore-10.2.0-IPython-7.18.1|x|x|x|x|x|x| +|JupyterNotebook/6.0.3-intel-2020a-Python-3.8.2-IPython-7.15.0|x|x|x|x|x|x| +|JupyterNotebook/6.0.3-foss-2020a-Python-3.8.2-IPython-7.15.0|-|x|x|-|x|x| +|JupyterNotebook/6.0.2-intel-2019b-Python-3.7.4-IPython-7.9.0|-|x|x|-|x|x| +|JupyterNotebook/6.0.2-foss-2019b-Python-3.7.4-IPython-7.9.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/KMC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/KMC.md index a5a692515184..d4c6064f0947 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/KMC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/KMC.md @@ -6,6 +6,10 @@ hide: KMC === + +KMC is a disk-based programm for counting k-mers from (possibly gzipped) FASTQ/FASTA files. + +http://sun.aei.polsl.pl/kmc # Available modules @@ -17,10 +21,10 @@ To start using KMC, load one of these modules using a `module load` command like module load KMC/3.2.1-GCC-11.2.0-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|KMC/3.2.1-GCC-11.2.0-Python-2.7.18|x|x|x|x|x|x|x|x| -|KMC/3.2.1-GCC-11.2.0|x|x|x|-|x|x|x|x| -|KMC/3.1.2rc1-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|KMC/3.2.1-GCC-11.2.0-Python-2.7.18|x|x|x|x|x|x| +|KMC/3.2.1-GCC-11.2.0|x|x|x|-|x|x| +|KMC/3.1.2rc1-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/KaHIP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/KaHIP.md index 8c73816e1fe3..bbdc4bacfff8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/KaHIP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/KaHIP.md @@ -6,6 +6,10 @@ hide: KaHIP ===== + +The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning. + +https://kahip.github.io/ # Available modules @@ -17,8 +21,8 @@ To start using KaHIP, load one of these modules using a `module load` command li module load KaHIP/3.14-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|KaHIP/3.14-gompi-2022a|-|-|-|x|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|KaHIP/3.14-gompi-2022a|-|-|-|x|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kaleido.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kaleido.md index 94d0fb4e4032..0239f4340b9a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Kaleido.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Kaleido.md @@ -6,6 +6,10 @@ hide: Kaleido ======= + +Fast static image export for web-based visualization libraries with zero dependencies + +https://github.com/plotly/Kaleido # Available modules @@ -17,8 +21,8 @@ To start using Kaleido, load one of these modules using a `module load` command module load Kaleido/0.1.0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Kaleido/0.1.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Kaleido/0.1.0-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kalign.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kalign.md index aded3fae67ae..fa3039a9c1cf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Kalign.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Kalign.md @@ -6,6 +6,10 @@ hide: Kalign ====== + +Kalign is a fast multiple sequence alignment program for biological sequences. + +https://github.com/TimoLassmann/kalign # Available modules @@ -17,11 +21,11 @@ To start using Kalign, load one of these modules using a `module load` command l module load Kalign/3.3.5-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Kalign/3.3.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Kalign/3.3.2-GCCcore-11.2.0|x|-|x|-|x|-|-|-| -|Kalign/3.3.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|Kalign/3.3.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Kalign/3.3.5-GCCcore-11.3.0|x|x|x|x|x|x| +|Kalign/3.3.2-GCCcore-11.2.0|x|-|x|-|x|-| +|Kalign/3.3.1-GCCcore-10.3.0|x|x|x|-|x|x| +|Kalign/3.3.1-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kent_tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kent_tools.md index bc7fc901cf44..b3da3b3d6e61 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Kent_tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Kent_tools.md @@ -6,6 +6,10 @@ hide: Kent_tools ========== + +Kent tools: collection of tools used by the UCSC genome browser. + +http://genome.cse.ucsc.edu/ # Available modules @@ -17,11 +21,11 @@ To start using Kent_tools, load one of these modules using a `module load` comma module load Kent_tools/20190326-linux.x86_64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Kent_tools/20190326-linux.x86_64|-|-|x|-|x|-|-|-| -|Kent_tools/422-GCC-11.2.0|x|x|x|-|x|x|x|x| -|Kent_tools/411-GCC-10.2.0|-|x|x|x|x|x|x|x| -|Kent_tools/401-gompi-2019b|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Kent_tools/20190326-linux.x86_64|-|-|x|-|x|-| +|Kent_tools/422-GCC-11.2.0|x|x|x|x|x|x| +|Kent_tools/411-GCC-10.2.0|-|x|x|x|x|x| +|Kent_tools/401-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Keras.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Keras.md index d72047674724..d51b35cb5c71 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Keras.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Keras.md @@ -6,6 +6,10 @@ hide: Keras ===== + +Keras is a deep learning API written in Python, running on top of the machine learning platform TensorFlow. + +https://keras.io/ # Available modules @@ -17,10 +21,29 @@ To start using Keras, load one of these modules using a `module load` command li module load Keras/2.4.3-fosscuda-2020b-TensorFlow-2.5.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Keras/2.4.3-fosscuda-2020b-TensorFlow-2.5.0|x|-|-|-|x|-| +|Keras/2.4.3-fosscuda-2020b|-|-|-|-|x|-| +|Keras/2.4.3-foss-2020b|-|x|x|x|x|x| + + +### Keras/2.4.3-fosscuda-2020b-TensorFlow-2.5.0 + +This is a list of extensions included in the module: + +Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2 + +### Keras/2.4.3-fosscuda-2020b + +This is a list of extensions included in the module: + +Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2 + +### Keras/2.4.3-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Keras/2.4.3-fosscuda-2020b-TensorFlow-2.5.0|x|-|-|-|x|-|-|-| -|Keras/2.4.3-fosscuda-2020b|-|-|-|-|x|-|-|-| -|Keras/2.4.3-foss-2020b|-|x|x|x|x|x|x|x| +Keras-2.4.3, Keras_Applications-1.0.8, Keras_Preprocessing-1.1.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/KerasTuner.md b/mkdocs/docs/HPC/only/gent/available_software/detail/KerasTuner.md index 035f625562f1..f4746b97300f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/KerasTuner.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/KerasTuner.md @@ -6,6 +6,10 @@ hide: KerasTuner ========== + +KerasTuner is an easy-to-use, scalable hyperparameter optimization framework that solves the painpoints of hyperparameter search. + +https://keras.io/keras_tuner # Available modules @@ -17,8 +21,15 @@ To start using KerasTuner, load one of these modules using a `module load` comma module load KerasTuner/1.3.5-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|KerasTuner/1.3.5-foss-2022a|x|x|x|x|x|x| + + +### KerasTuner/1.3.5-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|KerasTuner/1.3.5-foss-2022a|x|x|x|x|x|x|x|x| +keras-tuner-1.3.5, kt-legacy-1.0.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken.md index 988c14018e04..79fed57977ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken.md @@ -6,6 +6,10 @@ hide: Kraken ====== + +Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. + +https://ccb.jhu.edu/software/kraken/ # Available modules @@ -17,9 +21,9 @@ To start using Kraken, load one of these modules using a `module load` command l module load Kraken/1.1.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Kraken/1.1.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|Kraken/1.1.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Kraken/1.1.1-GCCcore-10.2.0|-|x|x|x|x|x| +|Kraken/1.1.1-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken2.md index c9b0c185e9ee..d9de98c4b7a9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Kraken2.md @@ -6,6 +6,10 @@ hide: Kraken2 ======= + +Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm. + +https://github.com/DerrickWood/kraken2/wiki # Available modules @@ -17,9 +21,9 @@ To start using Kraken2, load one of these modules using a `module load` command module load Kraken2/2.1.2-gompi-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Kraken2/2.1.2-gompi-2021a|-|x|x|-|x|x|x|x| -|Kraken2/2.0.9-beta-gompi-2020a-Perl-5.30.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Kraken2/2.1.2-gompi-2021a|-|x|x|x|x|x| +|Kraken2/2.0.9-beta-gompi-2020a-Perl-5.30.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/KrakenUniq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/KrakenUniq.md index 7819da8423dd..69d103be0279 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/KrakenUniq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/KrakenUniq.md @@ -6,6 +6,10 @@ hide: KrakenUniq ========== + +KrakenUniq: confident and fast metagenomics classification using unique k-mer counts + +https://github.com/fbreitwieser/krakenuniq/ # Available modules @@ -17,8 +21,8 @@ To start using KrakenUniq, load one of these modules using a `module load` comma module load KrakenUniq/1.0.3-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|KrakenUniq/1.0.3-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|KrakenUniq/1.0.3-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/KronaTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/KronaTools.md index d9b4c04eac2d..baa87ba891c4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/KronaTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/KronaTools.md @@ -6,6 +6,10 @@ hide: KronaTools ========== + +Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files. + +https://github.com/marbl/Krona/wiki/KronaTools # Available modules @@ -14,12 +18,13 @@ The overview below shows which KronaTools installations are available per HPC-UG To start using KronaTools, load one of these modules using a `module load` command like: ```shell -module load KronaTools/2.8.1-GCCcore-11.3.0 +module load KronaTools/2.8.1-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|KronaTools/2.8.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|KronaTools/2.8-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|KronaTools/2.8.1-GCCcore-12.2.0|x|x|x|x|x|x| +|KronaTools/2.8.1-GCCcore-11.3.0|x|x|x|x|x|x| +|KronaTools/2.8-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LAME.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LAME.md index c62abdaac93f..7810ff07d22c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LAME.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LAME.md @@ -6,6 +6,10 @@ hide: LAME ==== + +LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL. + +http://lame.sourceforge.net/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which LAME installations are available per HPC-UGent Ti To start using LAME, load one of these modules using a `module load` command like: ```shell -module load LAME/3.100-GCCcore-12.2.0 +module load LAME/3.100-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LAME/3.100-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|LAME/3.100-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|LAME/3.100-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|LAME/3.100-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|LAME/3.100-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|LAME/3.100-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|LAME/3.100-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LAME/3.100-GCCcore-12.3.0|x|x|x|x|x|x| +|LAME/3.100-GCCcore-12.2.0|x|x|x|x|x|x| +|LAME/3.100-GCCcore-11.3.0|x|x|x|x|x|x| +|LAME/3.100-GCCcore-11.2.0|x|x|x|x|x|x| +|LAME/3.100-GCCcore-10.3.0|x|x|x|x|x|x| +|LAME/3.100-GCCcore-10.2.0|x|x|x|x|x|x| +|LAME/3.100-GCCcore-9.3.0|-|x|x|-|x|x| +|LAME/3.100-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LAMMPS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LAMMPS.md index 45d48bf67102..ab3f5c9586c8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LAMMPS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LAMMPS.md @@ -6,6 +6,10 @@ hide: LAMMPS ====== + +LAMMPS is a classical molecular dynamics code, and an acronymfor Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS haspotentials for solid-state materials (metals, semiconductors) and soft matter(biomolecules, polymers) and coarse-grained or mesoscopic systems. It can beused to model atoms or, more generically, as a parallel particle simulator atthe atomic, meso, or continuum scale. LAMMPS runs on single processors or inparallel using message-passing techniques and a spatial-decomposition of thesimulation domain. The code is designed to be easy to modify or extend with newfunctionality. + +https://lammps.sandia.gov/ # Available modules @@ -17,17 +21,17 @@ To start using LAMMPS, load one of these modules using a `module load` command l module load LAMMPS/patch_20Nov2019-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LAMMPS/patch_20Nov2019-intel-2019b|-|x|-|-|-|-|-|-| -|LAMMPS/23Jun2022-foss-2021b-kokkos-CUDA-11.4.1|x|-|-|-|x|-|-|-| -|LAMMPS/23Jun2022-foss-2021b-kokkos|x|x|x|-|x|x|x|x| -|LAMMPS/23Jun2022-foss-2021a-kokkos|-|x|x|-|x|x|x|x| -|LAMMPS/7Aug2019-intel-2019b-Python-3.7.4-kokkos-OCTP|-|x|x|-|x|x|-|x| -|LAMMPS/7Aug2019-intel-2019b-Python-3.7.4-kokkos|-|-|x|-|x|x|-|x| -|LAMMPS/7Aug2019-foss-2019b-Python-3.7.4-kokkos|-|x|x|-|x|x|-|x| -|LAMMPS/3Mar2020-intel-2020a-Python-3.8.2-kokkos|-|x|x|-|x|x|x|x| -|LAMMPS/3Mar2020-intel-2019b-Python-3.7.4-kokkos|-|x|x|-|x|x|-|x| -|LAMMPS/3Mar2020-foss-2019b-Python-3.7.4-kokkos|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LAMMPS/patch_20Nov2019-intel-2019b|-|x|-|-|-|-| +|LAMMPS/23Jun2022-foss-2021b-kokkos-CUDA-11.4.1|x|-|-|-|x|-| +|LAMMPS/23Jun2022-foss-2021b-kokkos|x|x|x|-|x|x| +|LAMMPS/23Jun2022-foss-2021a-kokkos|-|x|x|-|x|x| +|LAMMPS/7Aug2019-intel-2019b-Python-3.7.4-kokkos-OCTP|-|x|x|-|x|x| +|LAMMPS/7Aug2019-intel-2019b-Python-3.7.4-kokkos|-|-|x|-|x|x| +|LAMMPS/7Aug2019-foss-2019b-Python-3.7.4-kokkos|-|x|x|-|x|x| +|LAMMPS/3Mar2020-intel-2020a-Python-3.8.2-kokkos|-|x|x|-|x|x| +|LAMMPS/3Mar2020-intel-2019b-Python-3.7.4-kokkos|-|x|x|-|x|x| +|LAMMPS/3Mar2020-foss-2019b-Python-3.7.4-kokkos|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LAST.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LAST.md index eab42d869a0c..d19dddae1a67 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LAST.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LAST.md @@ -6,6 +6,10 @@ hide: LAST ==== + +LAST finds similar regions between sequences. + +http://last.cbrc.jp/ # Available modules @@ -17,9 +21,9 @@ To start using LAST, load one of these modules using a `module load` command lik module load LAST/1179-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LAST/1179-GCC-10.2.0|-|x|x|x|x|x|x|x| -|LAST/1045-intel-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LAST/1179-GCC-10.2.0|-|x|x|x|x|x| +|LAST/1045-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LASTZ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LASTZ.md index 0cec1ae2a88a..73d273cfb91a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LASTZ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LASTZ.md @@ -6,6 +6,10 @@ hide: LASTZ ===== + +LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. + +https://www.bx.psu.edu/~rsharris/lastz/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which LASTZ installations are available per HPC-UGent T To start using LASTZ, load one of these modules using a `module load` command like: ```shell -module load LASTZ/1.04.03-foss-2019b +module load LASTZ/1.04.22-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LASTZ/1.04.03-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LASTZ/1.04.22-GCC-12.3.0|x|x|x|x|x|x| +|LASTZ/1.04.03-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LDC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LDC.md index 2cc56579ec2a..566191ee1036 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LDC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LDC.md @@ -6,6 +6,10 @@ hide: LDC === + +The LLVM-based D Compiler + +https://wiki.dlang.org/LDC # Available modules @@ -17,11 +21,11 @@ To start using LDC, load one of these modules using a `module load` command like module load LDC/1.30.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LDC/1.30.0-GCCcore-11.3.0|x|x|x|-|x|x|x|x| -|LDC/1.25.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|LDC/1.24.0-x86_64|x|x|x|-|x|x|x|x| -|LDC/0.17.6-x86_64|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LDC/1.30.0-GCCcore-11.3.0|x|x|x|x|x|x| +|LDC/1.25.1-GCCcore-10.2.0|-|x|x|x|x|x| +|LDC/1.24.0-x86_64|x|x|x|x|x|x| +|LDC/0.17.6-x86_64|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LERC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LERC.md index 67c5151797ea..1bb738af4694 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LERC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LERC.md @@ -6,6 +6,10 @@ hide: LERC ==== + +LERC is an open-source image or raster format which supports rapid encoding and decodingfor any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding,so the precision of the original input image is preserved (within user defined error bounds). + +https://github.com/Esri/lerc # Available modules @@ -14,12 +18,13 @@ The overview below shows which LERC installations are available per HPC-UGent Ti To start using LERC, load one of these modules using a `module load` command like: ```shell -module load LERC/4.0.0-GCCcore-12.2.0 +module load LERC/4.0.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LERC/4.0.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|LERC/4.0.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LERC/4.0.0-GCCcore-12.3.0|x|x|x|x|x|x| +|LERC/4.0.0-GCCcore-12.2.0|x|x|x|x|x|x| +|LERC/4.0.0-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LIANA+.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LIANA+.md new file mode 100644 index 000000000000..65db2eb58c35 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LIANA+.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +LIANA+ +====== + + +LIANA+ is a scalable framework that integrates and extends existing methods and knowledge to studycell-cell communication in single-cell, spatially-resolved, and multi-modal omics data. + +https://liana-py.readthedocs.io +# Available modules + + +The overview below shows which LIANA+ installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using LIANA+, load one of these modules using a `module load` command like: + +```shell +module load LIANA+/1.0.1-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LIANA+/1.0.1-foss-2022a|x|x|x|x|-|x| + + +### LIANA+/1.0.1-foss-2022a + +This is a list of extensions included in the module: + +liana-1.0.1, mizani-0.9.3, mudata-0.2.3, plotnine-0.10.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LIBSVM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LIBSVM.md index 7301f66cdb32..0b2ed57b95a8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LIBSVM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LIBSVM.md @@ -6,6 +6,10 @@ hide: LIBSVM ====== + +LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification. + +https://www.csie.ntu.edu.tw/~cjlin/libsvm/ # Available modules @@ -17,9 +21,9 @@ To start using LIBSVM, load one of these modules using a `module load` command l module load LIBSVM/3.30-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LIBSVM/3.30-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|LIBSVM/3.25-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LIBSVM/3.30-GCCcore-11.3.0|x|x|x|x|x|x| +|LIBSVM/3.25-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LLVM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LLVM.md index 384a6aa8017b..9b809c9b2cee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LLVM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LLVM.md @@ -6,6 +6,10 @@ hide: LLVM ==== + +The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator. + +https://llvm.org/ # Available modules @@ -17,18 +21,20 @@ To start using LLVM, load one of these modules using a `module load` command lik module load LLVM/16.0.6-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LLVM/16.0.6-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|LLVM/15.0.5-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|LLVM/14.0.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|LLVM/12.0.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|LLVM/11.1.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|LLVM/11.0.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|LLVM/10.0.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|LLVM/9.0.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|LLVM/9.0.0-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|LLVM/8.0.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| -|LLVM/7.0.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LLVM/16.0.6-GCCcore-12.3.0|x|x|x|x|x|x| +|LLVM/15.0.5-GCCcore-12.2.0|x|x|x|x|x|x| +|LLVM/14.0.6-GCCcore-12.3.0-llvmlite|x|x|x|x|x|x| +|LLVM/14.0.6-GCCcore-12.2.0-llvmlite|x|x|x|x|x|x| +|LLVM/14.0.3-GCCcore-11.3.0|x|x|x|x|x|x| +|LLVM/12.0.1-GCCcore-11.2.0|x|x|x|x|x|x| +|LLVM/11.1.0-GCCcore-10.3.0|x|x|x|x|x|x| +|LLVM/11.0.0-GCCcore-10.2.0|x|x|x|x|x|x| +|LLVM/10.0.1-GCCcore-10.2.0|-|x|x|x|x|x| +|LLVM/9.0.1-GCCcore-9.3.0|-|x|x|-|x|x| +|LLVM/9.0.0-GCCcore-8.3.0|x|x|x|-|x|x| +|LLVM/8.0.1-GCCcore-8.3.0|x|x|x|-|x|x| +|LLVM/7.0.1-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LMDB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LMDB.md index 75b6e0b222a9..8dab99c91e0c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LMDB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LMDB.md @@ -6,6 +6,10 @@ hide: LMDB ==== + +LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases. + +https://symas.com/lmdb # Available modules @@ -14,17 +18,18 @@ The overview below shows which LMDB installations are available per HPC-UGent Ti To start using LMDB, load one of these modules using a `module load` command like: ```shell -module load LMDB/0.9.29-GCCcore-12.2.0 +module load LMDB/0.9.31-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LMDB/0.9.29-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|LMDB/0.9.29-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|LMDB/0.9.29-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|LMDB/0.9.28-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|LMDB/0.9.24-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|LMDB/0.9.24-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|LMDB/0.9.24-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LMDB/0.9.31-GCCcore-12.3.0|x|x|x|x|x|x| +|LMDB/0.9.29-GCCcore-12.2.0|x|x|x|x|x|x| +|LMDB/0.9.29-GCCcore-11.3.0|x|x|x|x|x|x| +|LMDB/0.9.29-GCCcore-11.2.0|x|x|x|x|x|x| +|LMDB/0.9.28-GCCcore-10.3.0|x|x|x|x|x|x| +|LMDB/0.9.24-GCCcore-10.2.0|x|x|x|x|x|x| +|LMDB/0.9.24-GCCcore-9.3.0|-|x|x|-|x|x| +|LMDB/0.9.24-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LMfit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LMfit.md index 019b1025e308..7f37ddac0eec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LMfit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LMfit.md @@ -6,6 +6,10 @@ hide: LMfit ===== + +Lmfit provides a high-level interface to non-linear optimization and curve fitting problems for Python + +https://lmfit.github.io/lmfit-py # Available modules @@ -17,8 +21,15 @@ To start using LMfit, load one of these modules using a `module load` command li module load LMfit/1.0.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LMfit/1.0.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### LMfit/1.0.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LMfit/1.0.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +asteval-0.9.18, lmfit-1.0.0, uncertainties-3.1.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LPJmL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LPJmL.md index 463565d0567c..cbcad9b82b04 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LPJmL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LPJmL.md @@ -6,6 +6,10 @@ hide: LPJmL ===== + +Dynamic global vegetation model with managed land and river routing + +https://github.com/PIK-LPJmL/LPJmL # Available modules @@ -17,8 +21,8 @@ To start using LPJmL, load one of these modules using a `module load` command li module load LPJmL/4.0.003-iimpi-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LPJmL/4.0.003-iimpi-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LPJmL/4.0.003-iimpi-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LPeg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LPeg.md index b38fc72a528b..ad7a3615cab2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LPeg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LPeg.md @@ -6,6 +6,10 @@ hide: LPeg ==== + +LPeg is a new pattern-matching library for Lua, based on Parsing Expression Grammars (PEGs). + +http://www.inf.puc-rio.br/~roberto/lpeg/ # Available modules @@ -17,8 +21,8 @@ To start using LPeg, load one of these modules using a `module load` command lik module load LPeg/1.0.2-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LPeg/1.0.2-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LPeg/1.0.2-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md index ec3aecbb164c..77edb1766db0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LSD2.md @@ -6,6 +6,10 @@ hide: LSD2 ==== + +Least-squares methods to estimate rates and dates from phylogenies + +https://github.com/tothuhien/lsd2 # Available modules @@ -17,10 +21,10 @@ To start using LSD2, load one of these modules using a `module load` command lik module load LSD2/2.4.1-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LSD2/2.4.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|LSD2/2.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|LSD2/2.3-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LSD2/2.4.1-GCCcore-12.2.0|x|x|x|x|x|x| +|LSD2/2.3-GCCcore-11.3.0|x|x|x|x|x|x| +|LSD2/2.3-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LUMPY.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LUMPY.md index f94ccd956053..8b53c9477831 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LUMPY.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LUMPY.md @@ -6,6 +6,10 @@ hide: LUMPY ===== + +A probabilistic framework for structural variant discovery. + +https://github.com/arq5x/lumpy-sv # Available modules @@ -17,8 +21,8 @@ To start using LUMPY, load one of these modules using a `module load` command li module load LUMPY/0.3.1-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LUMPY/0.3.1-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LUMPY/0.3.1-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LZO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LZO.md index a96651ce2a6a..ad4fda90e9f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LZO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LZO.md @@ -6,6 +6,10 @@ hide: LZO === + +Portable lossless data compression library + +https://www.oberhumer.com/opensource/lzo/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which LZO installations are available per HPC-UGent Tie To start using LZO, load one of these modules using a `module load` command like: ```shell -module load LZO/2.10-GCCcore-11.3.0 +module load LZO/2.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LZO/2.10-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|LZO/2.10-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|LZO/2.10-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|LZO/2.10-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|LZO/2.10-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|LZO/2.10-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LZO/2.10-GCCcore-12.3.0|x|x|x|x|x|x| +|LZO/2.10-GCCcore-11.3.0|x|x|x|x|x|x| +|LZO/2.10-GCCcore-11.2.0|x|x|x|x|x|x| +|LZO/2.10-GCCcore-10.3.0|x|x|x|x|x|x| +|LZO/2.10-GCCcore-10.2.0|-|x|x|x|x|x| +|LZO/2.10-GCCcore-9.3.0|x|x|x|x|x|x| +|LZO/2.10-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/L_RNA_scaffolder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/L_RNA_scaffolder.md index 6c99744d8001..87a41301ab39 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/L_RNA_scaffolder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/L_RNA_scaffolder.md @@ -6,6 +6,10 @@ hide: L_RNA_scaffolder ================ + +L_RNA_scaffolder is a genome scaffolding tool with long trancriptome reads + +https://github.com/CAFS-bioinformatics/L_RNA_scaffolder # Available modules @@ -17,8 +21,8 @@ To start using L_RNA_scaffolder, load one of these modules using a `module load` module load L_RNA_scaffolder/20190530-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|L_RNA_scaffolder/20190530-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|L_RNA_scaffolder/20190530-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Lace.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Lace.md index f51f02f495a4..e64682246128 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Lace.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Lace.md @@ -6,6 +6,10 @@ hide: Lace ==== + +Building SuperTranscripts: A linear representation of transcriptome data + +https://github.com/Oshlack/Lace # Available modules @@ -17,8 +21,8 @@ To start using Lace, load one of these modules using a `module load` command lik module load Lace/1.14.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Lace/1.14.1-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Lace/1.14.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LevelDB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LevelDB.md new file mode 100644 index 000000000000..04191cce4b08 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LevelDB.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +LevelDB +======= + + +LevelDB is a fast key-value storage library written at Google that provides anordered mapping from string keys to string values. + +https://github.com/google/leveldb +# Available modules + + +The overview below shows which LevelDB installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using LevelDB, load one of these modules using a `module load` command like: + +```shell +module load LevelDB/1.22-GCCcore-11.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LevelDB/1.22-GCCcore-11.3.0|x|x|x|x|x|x| + + +### LevelDB/1.22-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +leveldb-0.201 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Levenshtein.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Levenshtein.md new file mode 100644 index 000000000000..ce58d971ce0d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Levenshtein.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +Levenshtein +=========== + + +Python extension for computing string edit distances and similarities. + +https://pypi.org/project/python-Levenshtein/ +# Available modules + + +The overview below shows which Levenshtein installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Levenshtein, load one of these modules using a `module load` command like: + +```shell +module load Levenshtein/0.24.0-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Levenshtein/0.24.0-GCCcore-12.2.0|x|x|x|x|x|x| + + +### Levenshtein/0.24.0-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +Levenshtein-0.24.0, rapidfuzz-3.6.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LiBis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LiBis.md index 527e03ce8ec4..a108bb3e6d13 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LiBis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LiBis.md @@ -6,6 +6,10 @@ hide: LiBis ===== + +An ultrasensitive alignment method for low input bisulfite sequencing + +https://github.com/Dangertrip/LiBis # Available modules @@ -17,8 +21,8 @@ To start using LiBis, load one of these modules using a `module load` command li module load LiBis/20200428-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LiBis/20200428-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LiBis/20200428-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LibLZF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LibLZF.md index 98e6314b7b4a..f3ecaa340398 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LibLZF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LibLZF.md @@ -6,6 +6,10 @@ hide: LibLZF ====== + +LibLZF is a very small data compression library. It consists of only two .c and two .h filesand is very easy to incorporate into your own programs. The compression algorithm is very, very fast, yet stillwritten in portable C. + +http://oldhome.schmorp.de/marc/liblzf.html # Available modules @@ -17,8 +21,8 @@ To start using LibLZF, load one of these modules using a `module load` command l module load LibLZF/3.6-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LibLZF/3.6-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LibLZF/3.6-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LibSoup.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LibSoup.md index b1adce696b90..637623ed5124 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LibSoup.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LibSoup.md @@ -6,6 +6,10 @@ hide: LibSoup ======= + +libsoup is an HTTP client/server library for GNOME. Ituses GObjects and the glib main loop, to integrate well with GNOMEapplications, and also has a synchronous API, for use in threadedapplications. + +https://wiki.gnome.org/Projects/libsoup # Available modules @@ -17,9 +21,9 @@ To start using LibSoup, load one of these modules using a `module load` command module load LibSoup/3.0.7-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LibSoup/3.0.7-GCC-11.2.0|x|x|x|x|x|x|x|x| -|LibSoup/2.74.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LibSoup/3.0.7-GCC-11.2.0|x|x|x|x|x|x| +|LibSoup/2.74.0-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LibTIFF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LibTIFF.md index 471324e30b94..89bd2aabcb17 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LibTIFF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LibTIFF.md @@ -6,6 +6,10 @@ hide: LibTIFF ======= + +tiff: Library and tools for reading and writing TIFF data files + +https://libtiff.maptools.org/ # Available modules @@ -14,17 +18,19 @@ The overview below shows which LibTIFF installations are available per HPC-UGent To start using LibTIFF, load one of these modules using a `module load` command like: ```shell -module load LibTIFF/4.4.0-GCCcore-12.2.0 +module load LibTIFF/4.6.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LibTIFF/4.4.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|LibTIFF/4.3.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|LibTIFF/4.3.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|LibTIFF/4.2.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|LibTIFF/4.1.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|LibTIFF/4.1.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|LibTIFF/4.0.10-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LibTIFF/4.6.0-GCCcore-13.2.0|x|x|x|x|x|x| +|LibTIFF/4.5.0-GCCcore-12.3.0|x|x|x|x|x|x| +|LibTIFF/4.4.0-GCCcore-12.2.0|x|x|x|x|x|x| +|LibTIFF/4.3.0-GCCcore-11.3.0|x|x|x|x|x|x| +|LibTIFF/4.3.0-GCCcore-11.2.0|x|x|x|x|x|x| +|LibTIFF/4.2.0-GCCcore-10.3.0|x|x|x|x|x|x| +|LibTIFF/4.1.0-GCCcore-10.2.0|x|x|x|x|x|x| +|LibTIFF/4.1.0-GCCcore-9.3.0|-|x|x|-|x|x| +|LibTIFF/4.0.10-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Libint.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Libint.md index 65ab95fb203b..72e3c1eea758 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Libint.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Libint.md @@ -6,6 +6,10 @@ hide: Libint ====== + +Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory. + +https://github.com/evaleev/libint # Available modules @@ -14,23 +18,24 @@ The overview below shows which Libint installations are available per HPC-UGent To start using Libint, load one of these modules using a `module load` command like: ```shell -module load Libint/2.7.2-GCC-12.2.0-lmax-6-cp2k +module load Libint/2.7.2-GCC-12.3.0-lmax-6-cp2k ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Libint/2.7.2-GCC-12.2.0-lmax-6-cp2k|x|x|x|x|x|x|x|x| -|Libint/2.7.2-GCC-11.3.0-lmax-6-cp2k|x|x|x|x|x|x|x|x| -|Libint/2.6.0-iimpi-2020b-lmax-6-cp2k|-|x|-|-|-|-|-|-| -|Libint/2.6.0-iimpi-2020a-lmax-6-cp2k|-|x|x|-|x|x|x|x| -|Libint/2.6.0-iccifort-2020.4.304-lmax-6-cp2k|-|x|x|-|x|-|-|-| -|Libint/2.6.0-gompi-2020b-lmax-6-cp2k|-|x|-|-|-|-|-|-| -|Libint/2.6.0-gompi-2020a-lmax-6-cp2k|-|x|x|-|x|x|x|x| -|Libint/2.6.0-GCC-10.3.0-lmax-6-cp2k|-|x|x|x|x|x|x|x| -|Libint/2.6.0-GCC-10.2.0-lmax-6-cp2k|-|x|x|x|x|x|x|x| -|Libint/1.1.6-iomkl-2020a|-|x|-|-|-|-|-|-| -|Libint/1.1.6-intel-2020a|-|x|x|-|x|x|x|x| -|Libint/1.1.6-intel-2019b|-|x|-|-|-|-|-|-| -|Libint/1.1.6-foss-2020a|-|x|-|-|-|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Libint/2.7.2-GCC-12.3.0-lmax-6-cp2k|x|x|x|x|x|x| +|Libint/2.7.2-GCC-12.2.0-lmax-6-cp2k|x|x|x|x|x|x| +|Libint/2.7.2-GCC-11.3.0-lmax-6-cp2k|x|x|x|x|x|x| +|Libint/2.6.0-iimpi-2020b-lmax-6-cp2k|-|x|-|-|-|-| +|Libint/2.6.0-iimpi-2020a-lmax-6-cp2k|-|x|x|-|x|x| +|Libint/2.6.0-iccifort-2020.4.304-lmax-6-cp2k|-|x|x|-|x|-| +|Libint/2.6.0-gompi-2020b-lmax-6-cp2k|-|x|-|-|-|-| +|Libint/2.6.0-gompi-2020a-lmax-6-cp2k|-|x|x|-|x|x| +|Libint/2.6.0-GCC-10.3.0-lmax-6-cp2k|-|x|x|x|x|x| +|Libint/2.6.0-GCC-10.2.0-lmax-6-cp2k|-|x|x|x|x|x| +|Libint/1.1.6-iomkl-2020a|-|x|-|-|-|-| +|Libint/1.1.6-intel-2020a|-|x|x|-|x|x| +|Libint/1.1.6-intel-2019b|-|x|-|-|-|-| +|Libint/1.1.6-foss-2020a|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Lighter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Lighter.md index 262ff3afde08..35b15e27c9b0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Lighter.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Lighter.md @@ -6,6 +6,10 @@ hide: Lighter ======= + +Fast and memory-efficient sequencing error corrector + +https://github.com/mourisl/Lighter # Available modules @@ -17,8 +21,8 @@ To start using Lighter, load one of these modules using a `module load` command module load Lighter/1.1.2-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Lighter/1.1.2-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Lighter/1.1.2-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LittleCMS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LittleCMS.md index 18d62f51d525..db24edc202e4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LittleCMS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LittleCMS.md @@ -6,6 +6,10 @@ hide: LittleCMS ========= + +Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance. + +http://www.littlecms.com/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which LittleCMS installations are available per HPC-UGe To start using LittleCMS, load one of these modules using a `module load` command like: ```shell -module load LittleCMS/2.14-GCCcore-12.2.0 +module load LittleCMS/2.15-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LittleCMS/2.14-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|LittleCMS/2.13.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|LittleCMS/2.12-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|LittleCMS/2.12-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|LittleCMS/2.11-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|LittleCMS/2.9-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|LittleCMS/2.9-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LittleCMS/2.15-GCCcore-12.3.0|x|x|x|x|x|x| +|LittleCMS/2.14-GCCcore-12.2.0|x|x|x|x|x|x| +|LittleCMS/2.13.1-GCCcore-11.3.0|x|x|x|x|x|x| +|LittleCMS/2.12-GCCcore-11.2.0|x|x|x|x|x|x| +|LittleCMS/2.12-GCCcore-10.3.0|x|x|x|x|x|x| +|LittleCMS/2.11-GCCcore-10.2.0|x|x|x|x|x|x| +|LittleCMS/2.9-GCCcore-9.3.0|-|x|x|-|x|x| +|LittleCMS/2.9-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LncLOOM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LncLOOM.md index 41203def2dbd..421fc7a4ecbd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LncLOOM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LncLOOM.md @@ -6,6 +6,10 @@ hide: LncLOOM ======= + +LncLOOM is a graph-based framework that uses integerprogramming to identify combinations of short motifs that are deeply conservedin rapidly evolving sequences. + +https://github.com/lncLOOM/lncLOOMv2/ # Available modules @@ -17,8 +21,15 @@ To start using LncLOOM, load one of these modules using a `module load` command module load LncLOOM/2.0-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LncLOOM/2.0-foss-2020b|-|x|x|x|x|x| + + +### LncLOOM/2.0-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LncLOOM/2.0-foss-2020b|-|x|x|x|x|x|x|x| +amply-0.1.4, LncLOOM-2.0, PuLP-2.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LoRDEC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LoRDEC.md index 3bc61ae4cf1a..dfa24eeb690d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LoRDEC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LoRDEC.md @@ -6,6 +6,10 @@ hide: LoRDEC ====== + +Program for correcting sequencing errors in long reads (e.g., PacBio, Oxford Nanopore) using highlyaccurate short reads (e.g., Illumina). + +https://www.lirmm.fr/~rivals/lordec # Available modules @@ -17,8 +21,8 @@ To start using LoRDEC, load one of these modules using a `module load` command l module load LoRDEC/0.9-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LoRDEC/0.9-gompi-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LoRDEC/0.9-gompi-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md index d93fa29a99bd..3a5c908e1608 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Longshot.md @@ -6,6 +6,10 @@ hide: Longshot ======== + +Longshot is a variant calling tool for diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). It takes as input an aligned BAM file and outputs a phased VCF file with variants and haplotype information. It can also output haplotype-separated BAM files that can be used for downstream analysis. Currently, it only calls single nucleotide variants (SNVs). + +https://github.com/pjedge/longshot # Available modules @@ -14,12 +18,13 @@ The overview below shows which Longshot installations are available per HPC-UGen To start using Longshot, load one of these modules using a `module load` command like: ```shell -module load Longshot/0.4.3-GCCcore-10.2.0 +module load Longshot/0.4.5-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Longshot/0.4.3-GCCcore-10.2.0|-|-|x|-|x|-|-|-| -|Longshot/0.4.1-GCCcore-8.3.0|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Longshot/0.4.5-GCCcore-11.3.0|x|x|x|x|x|x| +|Longshot/0.4.3-GCCcore-10.2.0|-|-|x|-|x|-| +|Longshot/0.4.1-GCCcore-8.3.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/LtrDetector.md b/mkdocs/docs/HPC/only/gent/available_software/detail/LtrDetector.md index 469a320748fe..e223bc9c11ca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/LtrDetector.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/LtrDetector.md @@ -6,6 +6,10 @@ hide: LtrDetector =========== + +A modern tool-suite for detectinglong terminal repeat retrotransposons de-novo onthe genomic scale + +https://github.com/TulsaBioinformaticsToolsmith/LtrDetector # Available modules @@ -17,8 +21,8 @@ To start using LtrDetector, load one of these modules using a `module load` comm module load LtrDetector/1.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|LtrDetector/1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|LtrDetector/1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Lua.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Lua.md index 5c37a9e6cb55..2b17e96080c3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Lua.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Lua.md @@ -6,6 +6,10 @@ hide: Lua === + +Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping. + +https://www.lua.org/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which Lua installations are available per HPC-UGent Tie To start using Lua, load one of these modules using a `module load` command like: ```shell -module load Lua/5.4.4-GCCcore-11.3.0 +module load Lua/5.4.6-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Lua/5.4.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Lua/5.4.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Lua/5.4.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Lua/5.4.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Lua/5.3.5-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Lua/5.3.5-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Lua/5.1.5-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Lua/5.4.6-GCCcore-12.3.0|x|x|x|x|x|x| +|Lua/5.4.4-GCCcore-11.3.0|x|x|x|x|x|x| +|Lua/5.4.3-GCCcore-11.2.0|x|x|x|x|x|x| +|Lua/5.4.3-GCCcore-10.3.0|x|x|x|x|x|x| +|Lua/5.4.2-GCCcore-10.2.0|x|x|x|x|x|x| +|Lua/5.3.5-GCCcore-10.2.0|x|x|x|x|x|x| +|Lua/5.3.5-GCCcore-9.3.0|-|x|x|-|x|x| +|Lua/5.1.5-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/M1QN3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/M1QN3.md index 8060da812c3e..836cc52e9a90 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/M1QN3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/M1QN3.md @@ -6,6 +6,10 @@ hide: M1QN3 ===== + +A solver of large-scale unconstrained minimization problems + +https://who.rocq.inria.fr/Jean-Charles.Gilbert/modulopt/optimization-routines/m1qn3/m1qn3.html # Available modules @@ -17,8 +21,8 @@ To start using M1QN3, load one of these modules using a `module load` command li module load M1QN3/3.3-GCC-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|M1QN3/3.3-GCC-10.3.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|M1QN3/3.3-GCC-10.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/M4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/M4.md index abb6bd266712..7828cfca8977 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/M4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/M4.md @@ -6,6 +6,10 @@ hide: M4 == + +GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. + +http://www.gnu.org/software/m4/m4.html # Available modules @@ -14,22 +18,23 @@ The overview below shows which M4 installations are available per HPC-UGent Tier To start using M4, load one of these modules using a `module load` command like: ```shell -module load M4/1.4.19-GCCcore-12.3.0 +module load M4/1.4.19-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|M4/1.4.19-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|M4/1.4.19-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|M4/1.4.19-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|M4/1.4.19-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|M4/1.4.19|x|x|x|x|x|x|x|x| -|M4/1.4.18-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|M4/1.4.18-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|M4/1.4.18-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|M4/1.4.18-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|M4/1.4.18-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|M4/1.4.18|x|x|x|x|x|x|x|x| -|M4/1.4.17|-|-|-|-|-|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|M4/1.4.19-GCCcore-13.2.0|x|x|x|x|x|x| +|M4/1.4.19-GCCcore-12.3.0|x|x|x|x|x|x| +|M4/1.4.19-GCCcore-12.2.0|x|x|x|x|x|x| +|M4/1.4.19-GCCcore-11.3.0|x|x|x|x|x|x| +|M4/1.4.19-GCCcore-11.2.0|x|x|x|x|x|x| +|M4/1.4.19|x|x|x|x|x|x| +|M4/1.4.18-GCCcore-10.3.0|x|x|x|x|x|x| +|M4/1.4.18-GCCcore-10.2.0|x|x|x|x|x|x| +|M4/1.4.18-GCCcore-9.3.0|x|x|x|x|x|x| +|M4/1.4.18-GCCcore-8.3.0|x|x|x|x|x|x| +|M4/1.4.18-GCCcore-8.2.0|-|x|-|-|-|-| +|M4/1.4.18|x|x|x|x|x|x| +|M4/1.4.17|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MACS2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MACS2.md index beebe68b0dda..39b430ebcfbd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MACS2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MACS2.md @@ -6,6 +6,10 @@ hide: MACS2 ===== + +Model Based Analysis for ChIP-Seq data + +https://github.com/taoliu/MACS # Available modules @@ -17,8 +21,8 @@ To start using MACS2, load one of these modules using a `module load` command li module load MACS2/2.2.7.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MACS2/2.2.7.1-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MACS2/2.2.7.1-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MACS3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MACS3.md new file mode 100644 index 000000000000..2a328f769869 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MACS3.md @@ -0,0 +1,42 @@ +--- +hide: + - toc +--- + +MACS3 +===== + + +Model Based Analysis for ChIP-Seq data + +https://macs3-project.github.io/MACS/ +# Available modules + + +The overview below shows which MACS3 installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using MACS3, load one of these modules using a `module load` command like: + +```shell +module load MACS3/3.0.1-gfbf-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MACS3/3.0.1-gfbf-2023a|x|x|x|x|x|x| +|MACS3/3.0.0-foss-2022b|x|x|x|x|x|x| + + +### MACS3/3.0.1-gfbf-2023a + +This is a list of extensions included in the module: + +cykhash-2.0.1, MACS3-3.0.1 + +### MACS3/3.0.0-foss-2022b + +This is a list of extensions included in the module: + +cykhash-2.0.1, MACS3-3.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md index fc13520d8a4d..30d765a091c0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MAFFT.md @@ -6,6 +6,10 @@ hide: MAFFT ===== + +MAFFT is a multiple sequence alignment program for unix-like operating systems.It offers a range of multiple alignment methods, L-INS-i (accurate; for alignmentof <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc. + +https://mafft.cbrc.jp/alignment/software/source.html # Available modules @@ -14,19 +18,20 @@ The overview below shows which MAFFT installations are available per HPC-UGent T To start using MAFFT, load one of these modules using a `module load` command like: ```shell -module load MAFFT/7.505-GCC-12.2.0-with-extensions +module load MAFFT/7.520-GCC-12.3.0-with-extensions ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MAFFT/7.505-GCC-12.2.0-with-extensions|x|x|x|x|x|x|x|x| -|MAFFT/7.505-GCC-11.3.0-with-extensions|x|x|x|x|x|x|x|x| -|MAFFT/7.490-gompi-2021b-with-extensions|x|x|x|-|x|x|x|x| -|MAFFT/7.475-gompi-2020b-with-extensions|-|x|x|x|x|x|x|x| -|MAFFT/7.475-GCC-10.2.0-with-extensions|-|x|x|x|x|x|x|x| -|MAFFT/7.453-iimpi-2020a-with-extensions|-|x|x|-|x|x|x|x| -|MAFFT/7.453-iccifort-2019.5.281-with-extensions|-|x|x|-|x|x|-|x| -|MAFFT/7.453-GCC-9.3.0-with-extensions|-|x|x|-|x|x|x|x| -|MAFFT/7.453-GCC-8.3.0-with-extensions|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MAFFT/7.520-GCC-12.3.0-with-extensions|x|x|x|x|x|x| +|MAFFT/7.505-GCC-12.2.0-with-extensions|x|x|x|x|x|x| +|MAFFT/7.505-GCC-11.3.0-with-extensions|x|x|x|x|x|x| +|MAFFT/7.490-gompi-2021b-with-extensions|x|x|x|-|x|x| +|MAFFT/7.475-gompi-2020b-with-extensions|-|x|x|x|x|x| +|MAFFT/7.475-GCC-10.2.0-with-extensions|-|x|x|x|x|x| +|MAFFT/7.453-iimpi-2020a-with-extensions|-|x|x|-|x|x| +|MAFFT/7.453-iccifort-2019.5.281-with-extensions|-|x|x|-|x|x| +|MAFFT/7.453-GCC-9.3.0-with-extensions|-|x|x|-|x|x| +|MAFFT/7.453-GCC-8.3.0-with-extensions|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MAGeCK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MAGeCK.md index b2517c97cda8..7a02e87c2d1d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MAGeCK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MAGeCK.md @@ -6,6 +6,10 @@ hide: MAGeCK ====== + +Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens (or GeCKO) technology. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute, and is being actively updated by Wei Li lab from Children's National Medical Center. + +https://sourceforge.net/p/mageck/wiki/Home/ # Available modules @@ -17,9 +21,9 @@ To start using MAGeCK, load one of these modules using a `module load` command l module load MAGeCK/0.5.9.5-gfbf-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MAGeCK/0.5.9.5-gfbf-2022b|x|x|x|x|x|x|x|x| -|MAGeCK/0.5.9.4-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MAGeCK/0.5.9.5-gfbf-2022b|x|x|x|x|x|x| +|MAGeCK/0.5.9.4-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MARS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MARS.md index 2ec395bb30f3..49c5df8db9bc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MARS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MARS.md @@ -6,6 +6,10 @@ hide: MARS ==== + +improving Multiple circular sequence Alignment using Refined Sequences + +https://github.com/lorrainea/MARS # Available modules @@ -17,8 +21,8 @@ To start using MARS, load one of these modules using a `module load` command lik module load MARS/20191101-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MARS/20191101-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MARS/20191101-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MATIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MATIO.md index 41a48f3877dc..e0f2dc626e12 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MATIO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MATIO.md @@ -6,6 +6,10 @@ hide: MATIO ===== + +matio is an C library for reading and writing Matlab MAT files. + +https://sourceforge.net/projects/matio/ # Available modules @@ -17,8 +21,8 @@ To start using MATIO, load one of these modules using a `module load` command li module load MATIO/1.5.17-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MATIO/1.5.17-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MATIO/1.5.17-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md index f1e71efebd61..cb647bdcb2c2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MATLAB.md @@ -6,6 +6,10 @@ hide: MATLAB ====== + +MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran. + +http://www.mathworks.com/products/matlab # Available modules @@ -17,10 +21,10 @@ To start using MATLAB, load one of these modules using a `module load` command l module load MATLAB/2022b-r5 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MATLAB/2022b-r5|x|x|x|x|x|x|x|x| -|MATLAB/2021b|x|x|x|-|x|x|x|x| -|MATLAB/2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MATLAB/2022b-r5|x|x|x|x|x|x| +|MATLAB/2021b|x|x|x|-|x|x| +|MATLAB/2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MBROLA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MBROLA.md index 8d84f83422b7..e01a73b1d2e7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MBROLA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MBROLA.md @@ -6,6 +6,10 @@ hide: MBROLA ====== + +MBROLA is a speech synthesizer based on the concatenation of diphones.It takes a list of phonemes as input, together with prosodic information(duration of phonemes and a piecewise linear description of pitch),and produces speech samples on 16 bits (linear),at the sampling frequency of the diphone database.MBROLA voices project provides list of MBROLA speech synthesizer voices.It is intended to provide easier collaboration andautomatic updates for individual users and packagers. + +['https://github.com/numediart/MBROLA', 'https://github.com/numediart/MBROLA-voices'] # Available modules @@ -17,8 +21,8 @@ To start using MBROLA, load one of these modules using a `module load` command l module load MBROLA/3.3-GCCcore-9.3.0-voices-20200330 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MBROLA/3.3-GCCcore-9.3.0-voices-20200330|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MBROLA/3.3-GCCcore-9.3.0-voices-20200330|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MCL.md index a660b7cb0d19..46048c58137b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MCL.md @@ -6,6 +6,10 @@ hide: MCL === + +The MCL algorithm is short for the Markov Cluster Algorithm, a fastand scalable unsupervised cluster algorithm for graphs (also known as networks) basedon simulation of (stochastic) flow in graphs. + +https://micans.org/mcl/ # Available modules @@ -14,13 +18,14 @@ The overview below shows which MCL installations are available per HPC-UGent Tie To start using MCL, load one of these modules using a `module load` command like: ```shell -module load MCL/14.137-GCCcore-10.2.0 +module load MCL/22.282-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MCL/14.137-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|MCL/14.137-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|MCL/14.137-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MCL/22.282-GCCcore-12.3.0|x|x|x|x|x|x| +|MCL/14.137-GCCcore-10.2.0|-|x|x|x|x|x| +|MCL/14.137-GCCcore-9.3.0|-|x|x|-|x|x| +|MCL/14.137-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MDAnalysis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MDAnalysis.md index f82acae58f42..b1b219c169b6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MDAnalysis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MDAnalysis.md @@ -6,6 +6,10 @@ hide: MDAnalysis ========== + +MDAnalysis is an object-oriented Python library to analyze trajectories from molecular dynamics (MD)simulations in many popular formats. + +https://www.mdanalysis.org/ # Available modules @@ -17,9 +21,22 @@ To start using MDAnalysis, load one of these modules using a `module load` comma module load MDAnalysis/2.4.2-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MDAnalysis/2.4.2-foss-2022b|x|x|x|x|x|x| +|MDAnalysis/2.4.2-foss-2021a|x|x|x|x|x|x| + + +### MDAnalysis/2.4.2-foss-2022b + +This is a list of extensions included in the module: + +fasteners-0.18, funcsigs-1.0.2, GridDataFormats-1.0.1, gsd-2.8.0, MDAnalysis-2.4.2, mmtf-python-1.1.3, mrcfile-1.4.3, msgpack-1.0.5 + +### MDAnalysis/2.4.2-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MDAnalysis/2.4.2-foss-2022b|x|x|x|x|x|x|x|x| -|MDAnalysis/2.4.2-foss-2021a|x|x|x|x|x|x|x|x| +biopython-1.81, fasteners-0.18, GridDataFormats-1.0.1, gsd-2.8.0, MDAnalysis-2.4.2, mmtf-python-1.1.3, mrcfile-1.4.3, msgpack-1.0.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MDTraj.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MDTraj.md index 19db27f4ed1c..bf00e6783de7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MDTraj.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MDTraj.md @@ -6,6 +6,10 @@ hide: MDTraj ====== + +Read, write and analyze MD trajectories with only a few lines of Python code. + +https://mdtraj.org # Available modules @@ -17,17 +21,66 @@ To start using MDTraj, load one of these modules using a `module load` command l module load MDTraj/1.9.7-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MDTraj/1.9.7-intel-2022a|x|x|x|-|x|x|x|x| -|MDTraj/1.9.7-intel-2021b|x|x|x|-|x|x|x|x| -|MDTraj/1.9.7-foss-2022a|x|x|x|-|x|x|x|x| -|MDTraj/1.9.7-foss-2021a|x|x|x|-|x|x|x|x| -|MDTraj/1.9.5-intel-2020b|-|x|x|-|x|x|x|x| -|MDTraj/1.9.5-fosscuda-2020b|x|-|-|-|x|-|-|-| -|MDTraj/1.9.5-foss-2020b|-|x|x|x|x|x|x|x| -|MDTraj/1.9.4-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|MDTraj/1.9.3-intel-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|MDTraj/1.9.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MDTraj/1.9.7-intel-2022a|x|x|x|-|x|x| +|MDTraj/1.9.7-intel-2021b|x|x|x|-|x|x| +|MDTraj/1.9.7-foss-2022a|x|x|x|-|x|x| +|MDTraj/1.9.7-foss-2021a|x|x|x|-|x|x| +|MDTraj/1.9.5-intel-2020b|-|x|x|-|x|x| +|MDTraj/1.9.5-fosscuda-2020b|x|-|-|-|x|-| +|MDTraj/1.9.5-foss-2020b|-|x|x|x|x|x| +|MDTraj/1.9.4-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|MDTraj/1.9.3-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|MDTraj/1.9.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### MDTraj/1.9.7-intel-2022a + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.1 + +### MDTraj/1.9.7-intel-2021b + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.0.5 + +### MDTraj/1.9.7-foss-2022a + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.1 + +### MDTraj/1.9.7-foss-2021a + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.3, mdtraj-1.9.7, pymbar-3.1 + +### MDTraj/1.9.5-intel-2020b + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.2, mdtraj-1.9.5, pymbar-3.0.5 + +### MDTraj/1.9.5-fosscuda-2020b + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.2, mdtraj-1.9.5, pymbar-3.0.5 + +### MDTraj/1.9.5-foss-2020b + +This is a list of extensions included in the module: + +astor-0.8.1, astunparse-1.6.2, mdtraj-1.9.5, pymbar-3.0.5 + +### MDTraj/1.9.4-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +astor-0.8.1, mdtraj-1.9.4, pymbar-3.0.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGA.md index 6ffc422a7cbb..f991b528e39e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGA.md @@ -6,6 +6,10 @@ hide: MEGA ==== + +MEGA-CC (Molecular Evolutionary Genetics Analysis Computational Core) is an integrated suite of tools for statistics-based comparative analysis of molecular sequence data based on evolutionary principles. + +https://www.megasoftware.net/ # Available modules @@ -17,8 +21,8 @@ To start using MEGA, load one of these modules using a `module load` command lik module load MEGA/11.0.10 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MEGA/11.0.10|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MEGA/11.0.10|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAHIT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAHIT.md index e8b29b852e32..0ad35d79f551 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAHIT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAHIT.md @@ -6,6 +6,10 @@ hide: MEGAHIT ======= + +An ultra-fast single-node solution for large and complexmetagenomics assembly via succinct de Bruijn graph + +https://github.com/voutcn/megahit # Available modules @@ -14,13 +18,14 @@ The overview below shows which MEGAHIT installations are available per HPC-UGent To start using MEGAHIT, load one of these modules using a `module load` command like: ```shell -module load MEGAHIT/1.2.9-GCCcore-11.3.0 +module load MEGAHIT/1.2.9-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MEGAHIT/1.2.9-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|MEGAHIT/1.2.9-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|MEGAHIT/1.2.9-GCCcore-10.2.0-Python-2.7.18|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MEGAHIT/1.2.9-GCCcore-12.3.0|x|x|x|x|x|x| +|MEGAHIT/1.2.9-GCCcore-11.3.0|x|x|x|x|x|x| +|MEGAHIT/1.2.9-GCCcore-11.2.0|x|x|x|-|x|x| +|MEGAHIT/1.2.9-GCCcore-10.2.0-Python-2.7.18|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAN.md new file mode 100644 index 000000000000..10a506f8728f --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MEGAN.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +MEGAN +===== + + +MEGAN is a comprehensive toolbox for interactively analyzing microbiome data + +http://megan.informatik.uni-tuebingen.de/ +# Available modules + + +The overview below shows which MEGAN installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using MEGAN, load one of these modules using a `module load` command like: + +```shell +module load MEGAN/6.25.3-Java-17 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MEGAN/6.25.3-Java-17|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MEM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MEM.md index b0a7528883b6..e259400857c1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MEM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MEM.md @@ -6,6 +6,10 @@ hide: MEM === + +Marker Enrichment Modeling (MEM) is a tool designed to calculate enrichment scores. + +https://github.com/cytolab/mem # Available modules @@ -17,9 +21,9 @@ To start using MEM, load one of these modules using a `module load` command like module load MEM/20191023-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MEM/20191023-foss-2020a-R-4.0.0|-|-|x|-|x|-|-|-| -|MEM/20191023-foss-2019b|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MEM/20191023-foss-2020a-R-4.0.0|-|-|x|-|x|-| +|MEM/20191023-foss-2019b|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MEME.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MEME.md index 44b5e4ebac5c..342aa7020bcd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MEME.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MEME.md @@ -6,6 +6,10 @@ hide: MEME ==== + +The MEME Suite allows you to: * discover motifs using MEME, DREME (DNA only) or GLAM2 on groups of related DNA or protein sequences, * search sequence databases with motifs using MAST, FIMO, MCAST or GLAM2SCAN, * compare a motif to all motifs in a database of motifs, * associate motifs with Gene Ontology terms via their putative target genes, and * analyse motif enrichment using SpaMo or CentriMo. + +https://meme-suite.org/meme/index.html # Available modules @@ -14,11 +18,12 @@ The overview below shows which MEME installations are available per HPC-UGent Ti To start using MEME, load one of these modules using a `module load` command like: ```shell -module load MEME/5.4.1-gompi-2021b-Python-2.7.18 +module load MEME/5.5.4-gompi-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MEME/5.4.1-gompi-2021b-Python-2.7.18|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MEME/5.5.4-gompi-2022b|x|x|x|x|x|x| +|MEME/5.4.1-gompi-2021b-Python-2.7.18|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MESS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MESS.md index 131034959f75..4cea86b42f81 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MESS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MESS.md @@ -6,6 +6,10 @@ hide: MESS ==== + +Master Equation System Solver (MESS) + +https://github.com/PACChem/MESS # Available modules @@ -17,8 +21,8 @@ To start using MESS, load one of these modules using a `module load` command lik module load MESS/0.1.6-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MESS/0.1.6-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MESS/0.1.6-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/METIS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/METIS.md index e7a80100d2bc..67af73c51668 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/METIS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/METIS.md @@ -6,6 +6,10 @@ hide: METIS ===== + +METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. + +http://glaros.dtc.umn.edu/gkhome/metis/metis/overview # Available modules @@ -14,16 +18,18 @@ The overview below shows which METIS installations are available per HPC-UGent T To start using METIS, load one of these modules using a `module load` command like: ```shell -module load METIS/5.1.0-GCCcore-11.3.0 +module load METIS/5.1.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|METIS/5.1.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|METIS/5.1.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|METIS/5.1.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|METIS/5.1.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|METIS/5.1.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|METIS/5.1.0-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|METIS/5.1.0-GCCcore-12.3.0|x|x|x|x|x|x| +|METIS/5.1.0-GCCcore-12.2.0|x|x|x|x|x|x| +|METIS/5.1.0-GCCcore-11.3.0|x|x|x|x|x|x| +|METIS/5.1.0-GCCcore-11.2.0|x|x|x|x|x|x| +|METIS/5.1.0-GCCcore-10.3.0|x|x|x|x|x|x| +|METIS/5.1.0-GCCcore-10.2.0|x|x|x|x|x|x| +|METIS/5.1.0-GCCcore-9.3.0|-|x|x|-|x|x| +|METIS/5.1.0-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MIGRATE-N.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MIGRATE-N.md index 2f1b6411b454..f7499b73216d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MIGRATE-N.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MIGRATE-N.md @@ -6,6 +6,10 @@ hide: MIGRATE-N ========= + +Migrate estimates population parameters, effective population sizesand migration rates of n populations, using genetic data. It uses a coalescent theory approach taking into account history of mutations and uncertainty of the genealogy. + +https://peterbeerli.com/migrate-html5/index.html # Available modules @@ -17,8 +21,8 @@ To start using MIGRATE-N, load one of these modules using a `module load` comman module load MIGRATE-N/5.0.4-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MIGRATE-N/5.0.4-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MIGRATE-N/5.0.4-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MMseqs2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MMseqs2.md index d40fb7ab82af..aed6a6b0fa68 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MMseqs2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MMseqs2.md @@ -6,6 +6,10 @@ hide: MMseqs2 ======= + +MMseqs2: ultra fast and sensitive search and clustering suite + +https://mmseqs.com # Available modules @@ -14,19 +18,21 @@ The overview below shows which MMseqs2 installations are available per HPC-UGent To start using MMseqs2, load one of these modules using a `module load` command like: ```shell -module load MMseqs2/13-45111-gompi-2021b +module load MMseqs2/14-7e284-gompi-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MMseqs2/13-45111-gompi-2021b|x|x|x|-|x|x|x|x| -|MMseqs2/13-45111-gompi-2021a|x|x|x|-|x|x|x|x| -|MMseqs2/13-45111-gompi-2020b|x|x|x|x|x|x|x|x| -|MMseqs2/13-45111-20211019-gompi-2020b|-|x|x|x|x|x|x|x| -|MMseqs2/13-45111-20211006-gompi-2020b|-|x|x|x|x|-|x|-| -|MMseqs2/12-113e3-gompi-2020b|-|x|-|-|-|-|-|-| -|MMseqs2/11-e1a1c-iimpi-2019b|-|x|-|-|-|x|-|x| -|MMseqs2/10-6d92c-iimpi-2019b|-|x|x|-|x|x|-|x| -|MMseqs2/10-6d92c-gompi-2019b|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MMseqs2/14-7e284-gompi-2023a|x|x|x|x|x|x| +|MMseqs2/14-7e284-gompi-2022a|x|x|x|x|x|x| +|MMseqs2/13-45111-gompi-2021b|x|x|x|-|x|x| +|MMseqs2/13-45111-gompi-2021a|x|x|x|-|x|x| +|MMseqs2/13-45111-gompi-2020b|x|x|x|x|x|x| +|MMseqs2/13-45111-20211019-gompi-2020b|-|x|x|x|x|x| +|MMseqs2/13-45111-20211006-gompi-2020b|-|x|x|x|x|-| +|MMseqs2/12-113e3-gompi-2020b|-|x|-|-|-|-| +|MMseqs2/11-e1a1c-iimpi-2019b|-|x|-|-|-|x| +|MMseqs2/10-6d92c-iimpi-2019b|-|x|x|-|x|x| +|MMseqs2/10-6d92c-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MOABS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MOABS.md index 590c4d7ef14e..5975307e7af8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MOABS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MOABS.md @@ -6,6 +6,10 @@ hide: MOABS ===== + +MOABS: MOdel based Analysis of Bisulfite Sequencing data + +https://github.com/sunnyisgalaxy/moabs # Available modules @@ -17,8 +21,8 @@ To start using MOABS, load one of these modules using a `module load` command li module load MOABS/1.3.9.6-gompi-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MOABS/1.3.9.6-gompi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MOABS/1.3.9.6-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MONAI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MONAI.md index 6808f84cf284..29cfd33d30f3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MONAI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MONAI.md @@ -6,6 +6,10 @@ hide: MONAI ===== + +MONAI is a PyTorch-based, open-source framework for deep learning in healthcareimaging, part of PyTorch Ecosystem. + +https://monai.io/ # Available modules @@ -14,11 +18,25 @@ The overview below shows which MONAI installations are available per HPC-UGent T To start using MONAI, load one of these modules using a `module load` command like: ```shell -module load MONAI/1.0.1-foss-2022a +module load MONAI/1.0.1-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MONAI/1.0.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|MONAI/1.0.1-foss-2022a|x|x|x|x|x|x| + + +### MONAI/1.0.1-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +fire-0.5.0, gdown-4.7.1, lmdb-1.4.1, MONAI-1.0.1, termcolor-2.3.0 + +### MONAI/1.0.1-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MONAI/1.0.1-foss-2022a|x|x|x|x|x|x|x|x| +MONAI-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MOOSE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MOOSE.md index 0c763e8ee0c1..6876ce1656ba 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MOOSE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MOOSE.md @@ -6,6 +6,10 @@ hide: MOOSE ===== + +The Multiphysics Object-Oriented Simulation Environment (MOOSE) is a finite-element, multiphysicsframework primarily developed by Idaho National Laboratory + +https://mooseframework.inl.gov # Available modules @@ -17,9 +21,9 @@ To start using MOOSE, load one of these modules using a `module load` command li module load MOOSE/2022-06-10-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MOOSE/2022-06-10-foss-2022a|x|x|x|-|x|x|x|x| -|MOOSE/2021-05-18-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MOOSE/2022-06-10-foss-2022a|x|x|x|-|x|x| +|MOOSE/2021-05-18-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MPC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MPC.md index e3966a8df604..09e296c89cce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MPC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MPC.md @@ -6,6 +6,10 @@ hide: MPC === + +Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal. + +http://www.multiprecision.org/ # Available modules @@ -14,15 +18,17 @@ The overview below shows which MPC installations are available per HPC-UGent Tie To start using MPC, load one of these modules using a `module load` command like: ```shell -module load MPC/1.2.1-GCCcore-11.3.0 +module load MPC/1.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MPC/1.2.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|MPC/1.2.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|MPC/1.2.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|MPC/1.1.0-GCC-9.3.0|-|x|x|-|x|x|x|x| -|MPC/1.1.0-GCC-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MPC/1.3.1-GCCcore-12.3.0|x|x|x|x|x|x| +|MPC/1.3.1-GCCcore-12.2.0|x|x|x|x|x|x| +|MPC/1.2.1-GCCcore-11.3.0|x|x|x|x|x|x| +|MPC/1.2.1-GCCcore-11.2.0|x|x|x|x|x|x| +|MPC/1.2.1-GCCcore-10.2.0|-|x|x|x|x|x| +|MPC/1.1.0-GCC-9.3.0|-|x|x|-|x|x| +|MPC/1.1.0-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MPFR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MPFR.md index f4c666047a91..6e9b636bacc6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MPFR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MPFR.md @@ -6,6 +6,10 @@ hide: MPFR ==== + +The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. + +https://www.mpfr.org # Available modules @@ -14,17 +18,18 @@ The overview below shows which MPFR installations are available per HPC-UGent Ti To start using MPFR, load one of these modules using a `module load` command like: ```shell -module load MPFR/4.2.0-GCCcore-12.2.0 +module load MPFR/4.2.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MPFR/4.2.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|MPFR/4.1.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|MPFR/4.1.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|MPFR/4.1.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|MPFR/4.1.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|MPFR/4.0.2-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|MPFR/4.0.2-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MPFR/4.2.0-GCCcore-12.3.0|x|x|x|x|x|x| +|MPFR/4.2.0-GCCcore-12.2.0|x|x|x|x|x|x| +|MPFR/4.1.0-GCCcore-11.3.0|x|x|x|x|x|x| +|MPFR/4.1.0-GCCcore-11.2.0|x|x|x|x|x|x| +|MPFR/4.1.0-GCCcore-10.3.0|x|x|x|x|x|x| +|MPFR/4.1.0-GCCcore-10.2.0|x|x|x|x|x|x| +|MPFR/4.0.2-GCCcore-9.3.0|-|x|x|-|x|x| +|MPFR/4.0.2-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MRtrix.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MRtrix.md index 46b090aa27ac..b11b578ef91b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MRtrix.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MRtrix.md @@ -6,6 +6,10 @@ hide: MRtrix ====== + +MRtrix provides a set of tools to perform diffusion-weighted MR white-matter tractography in a manner robust to crossing fibres, using constrained spherical deconvolution (CSD) and probabilistic streamlines. + +http://www.brain.org.au/software/index.html#mrtrix # Available modules @@ -17,11 +21,11 @@ To start using MRtrix, load one of these modules using a `module load` command l module load MRtrix/3.0.4-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MRtrix/3.0.4-foss-2022b|x|x|x|x|x|x|x|x| -|MRtrix/3.0.3-foss-2021a|-|x|x|-|x|x|x|x| -|MRtrix/3.0-rc-20191217-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|MRtrix/3.0-rc-20191217-foss-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MRtrix/3.0.4-foss-2022b|x|x|x|x|x|x| +|MRtrix/3.0.3-foss-2021a|-|x|x|-|x|x| +|MRtrix/3.0-rc-20191217-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|MRtrix/3.0-rc-20191217-foss-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MSFragger.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MSFragger.md new file mode 100644 index 000000000000..797c7f53d02b --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MSFragger.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +MSFragger +========= + + +MSFragger is an ultrafast database search tool for peptide identification in mass spectrometry-based proteomics. It has demonstrated excellent performance across a wide range of datasets and applications. MSFragger is suitable for standard shotgun proteomics analyses as well as large datasets (including timsTOF PASEF data), enzyme unconstrained searches (e.g., peptidome), open database searches (e.g., precursor mass tolerance set to hundreds of Daltons) for identification of modified peptides, and glycopeptide identification (N-linked and O-linked). + +https://msfragger.nesvilab.org/ +# Available modules + + +The overview below shows which MSFragger installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using MSFragger, load one of these modules using a `module load` command like: + +```shell +module load MSFragger/4.0-Java-11 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MSFragger/4.0-Java-11|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MUMPS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MUMPS.md index a4d7094ce652..b731bd28c411 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MUMPS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MUMPS.md @@ -6,6 +6,10 @@ hide: MUMPS ===== + +A parallel sparse direct solver + +https://graal.ens-lyon.fr/MUMPS/ # Available modules @@ -14,19 +18,21 @@ The overview below shows which MUMPS installations are available per HPC-UGent T To start using MUMPS, load one of these modules using a `module load` command like: ```shell -module load MUMPS/5.5.1-foss-2022a-metis +module load MUMPS/5.6.1-foss-2023a-metis ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MUMPS/5.5.1-foss-2022a-metis|x|x|x|-|x|x|x|x| -|MUMPS/5.4.1-intel-2021b-metis|x|x|x|x|x|x|x|x| -|MUMPS/5.4.1-foss-2021b-metis|x|x|x|-|x|x|x|x| -|MUMPS/5.4.0-foss-2021a-metis|-|x|x|-|x|x|x|x| -|MUMPS/5.3.5-foss-2020b-metis|-|x|x|x|x|x|x|x| -|MUMPS/5.2.1-intel-2020a-metis|-|x|x|-|x|x|x|x| -|MUMPS/5.2.1-intel-2019b-metis|-|x|x|-|x|x|-|x| -|MUMPS/5.2.1-foss-2020a-metis|-|x|x|-|x|x|x|x| -|MUMPS/5.2.1-foss-2019b-metis|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MUMPS/5.6.1-foss-2023a-metis|x|x|x|x|x|x| +|MUMPS/5.6.1-foss-2022b-metis|x|x|x|x|x|x| +|MUMPS/5.5.1-foss-2022a-metis|x|x|x|x|x|x| +|MUMPS/5.4.1-intel-2021b-metis|x|x|x|x|x|x| +|MUMPS/5.4.1-foss-2021b-metis|x|x|x|-|x|x| +|MUMPS/5.4.0-foss-2021a-metis|-|x|x|-|x|x| +|MUMPS/5.3.5-foss-2020b-metis|-|x|x|x|x|x| +|MUMPS/5.2.1-intel-2020a-metis|-|x|x|-|x|x| +|MUMPS/5.2.1-intel-2019b-metis|-|x|x|-|x|x| +|MUMPS/5.2.1-foss-2020a-metis|-|x|x|-|x|x| +|MUMPS/5.2.1-foss-2019b-metis|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MUMmer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MUMmer.md index b5d522692f82..4e5858ae0e91 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MUMmer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MUMmer.md @@ -6,6 +6,10 @@ hide: MUMmer ====== + +MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. AMOS makes use of it. + +http://mummer.sourceforge.net/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which MUMmer installations are available per HPC-UGent To start using MUMmer, load one of these modules using a `module load` command like: ```shell -module load MUMmer/4.0.0beta2-GCCcore-11.2.0 +module load MUMmer/4.0.0rc1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MUMmer/4.0.0beta2-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|MUMmer/4.0.0beta2-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MUMmer/4.0.0rc1-GCCcore-12.3.0|x|x|x|x|x|x| +|MUMmer/4.0.0beta2-GCCcore-11.2.0|x|x|x|-|x|x| +|MUMmer/4.0.0beta2-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MUSCLE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MUSCLE.md index 64f6175f4140..38fff7a81a45 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MUSCLE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MUSCLE.md @@ -6,6 +6,10 @@ hide: MUSCLE ====== + +MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks. + +https://drive5.com/muscle/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which MUSCLE installations are available per HPC-UGent To start using MUSCLE, load one of these modules using a `module load` command like: ```shell -module load MUSCLE/5.1.0-GCCcore-11.3.0 +module load MUSCLE/5.1.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MUSCLE/5.1.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|MUSCLE/5.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|MUSCLE/3.8.1551-GCC-10.2.0|-|x|x|-|x|x|x|x| -|MUSCLE/3.8.1551-GCC-8.3.0|-|x|x|-|x|x|-|x| -|MUSCLE/3.8.31-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|MUSCLE/3.8.31-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MUSCLE/5.1.0-GCCcore-12.3.0|x|x|x|x|x|x| +|MUSCLE/5.1.0-GCCcore-11.3.0|x|x|x|x|x|x| +|MUSCLE/5.1-GCCcore-11.2.0|x|x|x|-|x|x| +|MUSCLE/3.8.1551-GCC-10.2.0|-|x|x|-|x|x| +|MUSCLE/3.8.1551-GCC-8.3.0|-|x|x|-|x|x| +|MUSCLE/3.8.31-GCCcore-11.2.0|x|x|x|-|x|x| +|MUSCLE/3.8.31-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MXNet.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MXNet.md index 3ecc83376c15..d35de9e99126 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MXNet.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MXNet.md @@ -6,6 +6,10 @@ hide: MXNet ===== + +Flexible and Efficient Library for Deep Learning + +https://mxnet.io/ # Available modules @@ -17,8 +21,8 @@ To start using MXNet, load one of these modules using a `module load` command li module load MXNet/1.9.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MXNet/1.9.1-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MXNet/1.9.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MaSuRCA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MaSuRCA.md index 9d939c15473d..e405d0819ff9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MaSuRCA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MaSuRCA.md @@ -6,6 +6,10 @@ hide: MaSuRCA ======= + +MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454, Pacbio and Nanopore). + +https://www.genome.umd.edu/masurca.html # Available modules @@ -17,8 +21,8 @@ To start using MaSuRCA, load one of these modules using a `module load` command module load MaSuRCA/4.1.0-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MaSuRCA/4.1.0-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MaSuRCA/4.1.0-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mako.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mako.md index f2f4f9333a59..2b90a45effe3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mako.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mako.md @@ -6,6 +6,10 @@ hide: Mako ==== + +A super-fast templating language that borrows the best ideas from the existing templating languages + +https://www.makotemplates.org # Available modules @@ -17,16 +21,23 @@ To start using Mako, load one of these modules using a `module load` command lik module load Mako/1.2.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Mako/1.2.4-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Mako/1.2.4-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Mako/1.2.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Mako/1.1.4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Mako/1.1.4-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Mako/1.1.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Mako/1.1.2-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Mako/1.1.0-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|Mako/1.0.8-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Mako/1.2.4-GCCcore-12.3.0|x|x|x|x|x|x| +|Mako/1.2.4-GCCcore-12.2.0|x|x|x|x|x|x| +|Mako/1.2.0-GCCcore-11.3.0|x|x|x|x|x|x| +|Mako/1.1.4-GCCcore-11.2.0|x|x|x|x|x|x| +|Mako/1.1.4-GCCcore-10.3.0|x|x|x|x|x|x| +|Mako/1.1.3-GCCcore-10.2.0|x|x|x|x|x|x| +|Mako/1.1.2-GCCcore-9.3.0|-|x|x|-|x|x| +|Mako/1.1.0-GCCcore-8.3.0|x|x|x|-|x|x| +|Mako/1.0.8-GCCcore-8.2.0|-|x|-|-|-|-| + + +### Mako/1.2.4-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +Mako-1.2.4, MarkupSafe-2.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB-connector-c.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB-connector-c.md index 7e9751324b96..f0d43e895d9a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB-connector-c.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB-connector-c.md @@ -6,6 +6,10 @@ hide: MariaDB-connector-c =================== + +MariaDB Connector/C is used to connect applications developed in C/C++ to MariaDB and MySQL databases. + +https://downloads.mariadb.org/connector-c/ # Available modules @@ -17,9 +21,9 @@ To start using MariaDB-connector-c, load one of these modules using a `module lo module load MariaDB-connector-c/3.1.7-GCCcore-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MariaDB-connector-c/3.1.7-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|MariaDB-connector-c/2.3.7-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MariaDB-connector-c/3.1.7-GCCcore-9.3.0|-|x|x|-|x|x| +|MariaDB-connector-c/2.3.7-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB.md index a0cdd178b735..ac1b6424891c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MariaDB.md @@ -6,6 +6,10 @@ hide: MariaDB ======= + +MariaDB is an enhanced, drop-in replacement for MySQL.Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga. + +https://mariadb.org/ # Available modules @@ -17,12 +21,12 @@ To start using MariaDB, load one of these modules using a `module load` command module load MariaDB/10.9.3-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MariaDB/10.9.3-GCC-11.3.0|x|x|x|x|x|x|x|x| -|MariaDB/10.6.4-GCC-11.2.0|x|x|x|-|x|x|x|x| -|MariaDB/10.6.4-GCC-10.3.0|x|x|x|-|x|x|x|x| -|MariaDB/10.5.8-GCC-10.2.0|-|x|x|x|x|x|x|x| -|MariaDB/10.4.13-gompi-2019b|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MariaDB/10.9.3-GCC-11.3.0|x|x|x|x|x|x| +|MariaDB/10.6.4-GCC-11.2.0|x|x|x|x|x|x| +|MariaDB/10.6.4-GCC-10.3.0|x|x|x|-|x|x| +|MariaDB/10.5.8-GCC-10.2.0|-|x|x|x|x|x| +|MariaDB/10.4.13-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mash.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mash.md index 4f734245f983..1de619f204ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mash.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mash.md @@ -6,6 +6,10 @@ hide: Mash ==== + +Fast genome and metagenome distance estimation using MinHash + +http://mash.readthedocs.org # Available modules @@ -17,10 +21,11 @@ To start using Mash, load one of these modules using a `module load` command lik module load Mash/2.3-intel-compilers-2021.4.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Mash/2.3-intel-compilers-2021.4.0|x|x|x|-|x|x|x|x| -|Mash/2.3-GCC-11.2.0|x|x|x|-|x|x|x|x| -|Mash/2.2-GCC-9.3.0|-|x|x|x|-|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Mash/2.3-intel-compilers-2021.4.0|x|x|x|-|x|x| +|Mash/2.3-GCC-12.3.0|x|x|x|x|x|x| +|Mash/2.3-GCC-11.2.0|x|x|x|-|x|x| +|Mash/2.2-GCC-9.3.0|-|x|x|x|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Maven.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Maven.md index d0cd4d31316b..c6731a0b1891 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Maven.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Maven.md @@ -6,6 +6,10 @@ hide: Maven ===== + +Binary maven install, Apache Maven is a software project management and comprehension tool. Based onthe concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from acentral piece of information. + +https://maven.apache.org/index.html # Available modules @@ -17,9 +21,9 @@ To start using Maven, load one of these modules using a `module load` command li module load Maven/3.6.3 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Maven/3.6.3|x|x|x|x|x|x|x|x| -|Maven/3.6.0|-|-|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Maven/3.6.3|x|x|x|x|x|x| +|Maven/3.6.0|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MaxBin.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MaxBin.md index e7e31d01829f..d4a08aacad2c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MaxBin.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MaxBin.md @@ -6,6 +6,10 @@ hide: MaxBin ====== + +MaxBin is software for binning assembled metagenomic sequencesbased on an Expectation-Maximization algorithm. + +https://sourceforge.net/projects/maxbin/ # Available modules @@ -17,9 +21,9 @@ To start using MaxBin, load one of these modules using a `module load` command l module load MaxBin/2.2.7-gompi-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MaxBin/2.2.7-gompi-2021b|x|x|x|-|x|x|x|x| -|MaxBin/2.2.7-gompi-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MaxBin/2.2.7-gompi-2021b|x|x|x|-|x|x| +|MaxBin/2.2.7-gompi-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MedPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MedPy.md index 42eee4459f39..75b99d38dd8c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MedPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MedPy.md @@ -6,6 +6,10 @@ hide: MedPy ===== + +MedPy is a library and script collection for medical image processing in Python, providing basic functionalities for reading, writing and manipulating large images of arbitrary dimensionality. Its main contributions are n-dimensional versions of popular image filters, a collection of image feature extractors, ready to be used with scikit-learn, and an exhaustive n-dimensional graph-cut package. + +https://pypi.org/project/MedPy/ # Available modules @@ -17,10 +21,10 @@ To start using MedPy, load one of these modules using a `module load` command li module load MedPy/0.4.0-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MedPy/0.4.0-fosscuda-2020b|x|-|-|-|x|-|-|-| -|MedPy/0.4.0-foss-2020b|-|x|x|x|x|x|x|x| -|MedPy/0.4.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MedPy/0.4.0-fosscuda-2020b|x|-|-|-|x|-| +|MedPy/0.4.0-foss-2020b|-|x|x|x|x|x| +|MedPy/0.4.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Megalodon.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Megalodon.md index a56440107db2..c584adcd6392 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Megalodon.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Megalodon.md @@ -6,6 +6,10 @@ hide: Megalodon ========= + +Megalodon is a research command line tool to extract high accuracy modified base and sequence variantcalls from raw nanopore reads by anchoring the information rich basecalling neural network output to a referencegenome/transriptome. + +https://github.com/nanoporetech/megalodon # Available modules @@ -17,9 +21,22 @@ To start using Megalodon, load one of these modules using a `module load` comman module load Megalodon/2.3.5-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Megalodon/2.3.5-fosscuda-2020b|x|-|-|-|x|-| +|Megalodon/2.3.5-foss-2020b|-|x|x|x|x|x| + + +### Megalodon/2.3.5-fosscuda-2020b + +This is a list of extensions included in the module: + +mappy-2.22, megalodon-2.3.5, ont-fast5-api-4.0.0, ont_pyguppy_client_lib-5.0.16, progressbar33-2.4 + +### Megalodon/2.3.5-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Megalodon/2.3.5-fosscuda-2020b|x|-|-|-|x|-|-|-| -|Megalodon/2.3.5-foss-2020b|-|x|x|x|x|x|x|x| +mappy-2.22, megalodon-2.3.5, ont-fast5-api-4.0.0, ont_pyguppy_client_lib-5.0.16, progressbar33-2.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mercurial.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mercurial.md index 4c0b201386b0..865e5cd11a75 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mercurial.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mercurial.md @@ -6,6 +6,10 @@ hide: Mercurial ========= + +Mercurial is a free, distributed source control management tool. It efficiently handles projectsof any size and offers an easy and intuitive interface. + +https://www.mercurial-scm.org # Available modules @@ -17,8 +21,8 @@ To start using Mercurial, load one of these modules using a `module load` comman module load Mercurial/6.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Mercurial/6.2-GCCcore-11.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Mercurial/6.2-GCCcore-11.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mesa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mesa.md index 1130c20bedce..6491b874200a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mesa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mesa.md @@ -6,6 +6,10 @@ hide: Mesa ==== + +Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics. + +https://www.mesa3d.org/ # Available modules @@ -17,17 +21,17 @@ To start using Mesa, load one of these modules using a `module load` command lik module load Mesa/23.1.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Mesa/23.1.4-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Mesa/22.2.4-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Mesa/22.0.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Mesa/21.1.7-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Mesa/21.1.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Mesa/20.2.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Mesa/20.0.2-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Mesa/19.2.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| -|Mesa/19.1.7-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|Mesa/19.0.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Mesa/23.1.4-GCCcore-12.3.0|x|x|x|x|x|x| +|Mesa/22.2.4-GCCcore-12.2.0|x|x|x|x|x|x| +|Mesa/22.0.3-GCCcore-11.3.0|x|x|x|x|x|x| +|Mesa/21.1.7-GCCcore-11.2.0|x|x|x|x|x|x| +|Mesa/21.1.1-GCCcore-10.3.0|x|x|x|x|x|x| +|Mesa/20.2.1-GCCcore-10.2.0|x|x|x|x|x|x| +|Mesa/20.0.2-GCCcore-9.3.0|-|x|x|-|x|x| +|Mesa/19.2.1-GCCcore-8.3.0|-|x|x|-|x|x| +|Mesa/19.1.7-GCCcore-8.3.0|x|x|x|-|x|x| +|Mesa/19.0.1-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Meson.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Meson.md index 105189d76e10..e474fae0d4b4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Meson.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Meson.md @@ -6,6 +6,10 @@ hide: Meson ===== + +Meson is a cross-platform build system designed to be both as fast and as user friendly as possible. + +https://mesonbuild.com # Available modules @@ -14,21 +18,22 @@ The overview below shows which Meson installations are available per HPC-UGent T To start using Meson, load one of these modules using a `module load` command like: ```shell -module load Meson/1.1.1-GCCcore-12.3.0 +module load Meson/1.2.3-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Meson/1.1.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Meson/0.64.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Meson/0.62.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Meson/0.59.1-GCCcore-8.3.0-Python-3.7.4|x|-|x|-|x|x|x|x| -|Meson/0.58.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Meson/0.58.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Meson/0.55.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Meson/0.55.1-GCCcore-9.3.0-Python-3.8.2|x|x|x|x|x|x|x|x| -|Meson/0.53.2-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| -|Meson/0.51.2-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|x|x| -|Meson/0.50.0-GCCcore-8.2.0-Python-3.7.2|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Meson/1.2.3-GCCcore-13.2.0|x|x|x|x|x|x| +|Meson/1.1.1-GCCcore-12.3.0|x|x|x|x|x|x| +|Meson/0.64.0-GCCcore-12.2.0|x|x|x|x|x|x| +|Meson/0.62.1-GCCcore-11.3.0|x|x|x|x|x|x| +|Meson/0.59.1-GCCcore-8.3.0-Python-3.7.4|x|-|x|-|x|x| +|Meson/0.58.2-GCCcore-11.2.0|x|x|x|x|x|x| +|Meson/0.58.0-GCCcore-10.3.0|x|x|x|x|x|x| +|Meson/0.55.3-GCCcore-10.2.0|x|x|x|x|x|x| +|Meson/0.55.1-GCCcore-9.3.0-Python-3.8.2|x|x|x|x|x|x| +|Meson/0.53.2-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| +|Meson/0.51.2-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| +|Meson/0.50.0-GCCcore-8.2.0-Python-3.7.2|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mesquite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mesquite.md index 6d810e1370c4..eeaf6fc09d09 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mesquite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mesquite.md @@ -6,6 +6,10 @@ hide: Mesquite ======== + +Mesh-Quality Improvement Library + +https://software.sandia.gov/mesquite/ # Available modules @@ -17,8 +21,8 @@ To start using Mesquite, load one of these modules using a `module load` command module load Mesquite/2.3.0-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Mesquite/2.3.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Mesquite/2.3.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaBAT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaBAT.md index cc504286086f..3fbee4c08f02 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaBAT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaBAT.md @@ -6,6 +6,10 @@ hide: MetaBAT ======= + +An efficient tool for accurately reconstructing single genomes from complex microbial communities + +https://bitbucket.org/berkeleylab/metabat # Available modules @@ -17,9 +21,9 @@ To start using MetaBAT, load one of these modules using a `module load` command module load MetaBAT/2.15-gompi-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MetaBAT/2.15-gompi-2021b|x|x|x|-|x|x|x|x| -|MetaBAT/2.15-gompi-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MetaBAT/2.15-gompi-2021b|x|x|x|-|x|x| +|MetaBAT/2.15-gompi-2020b-Python-2.7.18|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaEuk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaEuk.md index fb7dd170d620..51b171165966 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaEuk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaEuk.md @@ -6,6 +6,10 @@ hide: MetaEuk ======= + +MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. + +https://metaeuk.soedinglab.org # Available modules @@ -17,9 +21,9 @@ To start using MetaEuk, load one of these modules using a `module load` command module load MetaEuk/6-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MetaEuk/6-GCC-11.2.0|x|x|x|-|x|x|x|x| -|MetaEuk/4-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MetaEuk/6-GCC-11.2.0|x|x|x|-|x|x| +|MetaEuk/4-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaPhlAn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaPhlAn.md index 0bae1d39532e..48a2f2458fd1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MetaPhlAn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MetaPhlAn.md @@ -6,6 +6,10 @@ hide: MetaPhlAn ========= + +MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data + +https://github.com/biobakery/MetaPhlAn # Available modules @@ -17,8 +21,15 @@ To start using MetaPhlAn, load one of these modules using a `module load` comman module load MetaPhlAn/4.0.6-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MetaPhlAn/4.0.6-foss-2022a|x|x|x|x|x|x| + + +### MetaPhlAn/4.0.6-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MetaPhlAn/4.0.6-foss-2022a|x|x|x|x|x|x|x|x| +hclust2-1.0.0, MetaPhlAn-4.0.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Metagenome-Atlas.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Metagenome-Atlas.md index 60a8302bd697..374013b2b12e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Metagenome-Atlas.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Metagenome-Atlas.md @@ -6,6 +6,10 @@ hide: Metagenome-Atlas ================ + +Metagenome-atlas is a easy-to-use metagenomic pipeline based on snakemake. It handles all steps from QC, Assembly, Binning, to Annotation. + +https://github.com/metagenome-atlas/atlas # Available modules @@ -17,8 +21,15 @@ To start using Metagenome-Atlas, load one of these modules using a `module load` module load Metagenome-Atlas/2.4.3-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Metagenome-Atlas/2.4.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### Metagenome-Atlas/2.4.3-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Metagenome-Atlas/2.4.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +arrow-0.17.0, binaryornot-0.4.4, click-7.1.2, colorlover-0.3.0, cookiecutter-1.7.2, cufflinks-0.17.3, jinja2-time-0.2.0, Metagenome-Atlas-2.4.3, plotly-4.11.0, poyo-0.5.0, python-slugify-4.0.1, retrying-1.3.3, ruamel.yaml-0.16.12, ruamel.yaml.clib-0.2.2, text-unidecode-1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MethylDackel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MethylDackel.md index 88f50cfed227..46a3bb231378 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MethylDackel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MethylDackel.md @@ -6,6 +6,10 @@ hide: MethylDackel ============ + +A (mostly) universal methylation extractor for BS-seq experiments. + +https://github.com/dpryan79/MethylDackel # Available modules @@ -17,8 +21,8 @@ To start using MethylDackel, load one of these modules using a `module load` com module load MethylDackel/0.5.0-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MethylDackel/0.5.0-iccifort-2019.5.281|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MethylDackel/0.5.0-iccifort-2019.5.281|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MiXCR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MiXCR.md index ad3e26cbd182..7d0ef4a84147 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MiXCR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MiXCR.md @@ -6,6 +6,10 @@ hide: MiXCR ===== + +MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoiresfrom any type of sequencing data. + +https://milaboratory.com/software/mixcr # Available modules @@ -14,11 +18,12 @@ The overview below shows which MiXCR installations are available per HPC-UGent T To start using MiXCR, load one of these modules using a `module load` command like: ```shell -module load MiXCR/3.0.13-Java-11 +module load MiXCR/4.6.0-Java-17 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MiXCR/3.0.13-Java-11|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MiXCR/4.6.0-Java-17|x|x|x|x|x|x| +|MiXCR/3.0.13-Java-11|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MicrobeAnnotator.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MicrobeAnnotator.md index 8b70ba6a7fce..a4ec977859df 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MicrobeAnnotator.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MicrobeAnnotator.md @@ -6,6 +6,10 @@ hide: MicrobeAnnotator ================ + +Easy-to-use pipeline for the comprehensive metabolic annotation of microbial genomes. + +https://github.com/cruizperez/MicrobeAnnotator # Available modules @@ -17,8 +21,15 @@ To start using MicrobeAnnotator, load one of these modules using a `module load` module load MicrobeAnnotator/2.0.5-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MicrobeAnnotator/2.0.5-foss-2021a|-|x|x|-|x|x| + + +### MicrobeAnnotator/2.0.5-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MicrobeAnnotator/2.0.5-foss-2021a|-|x|x|-|x|x|x|x| +fasta-reader-1.0.0, gff-io-0.0.2, hmmer-0.1.0, importlib_resources-5.4.0, MicrobeAnnotator-2.0.5, pooch-1.5.2, wget-3.2, xopen-1.2.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mikado.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mikado.md new file mode 100644 index 000000000000..32611d58b17a --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mikado.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +Mikado +====== + + +Mikado is a lightweight Python3 pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies. Our approach leverages transcript assemblies generated by multiple methods to define expressed loci, assign a representative transcript and return a set of gene models that selects against transcripts that are chimeric, fragmented or with short or disrupted CDS. + +https://github.com/EI-CoreBioinformatics/mikado +# Available modules + + +The overview below shows which Mikado installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Mikado, load one of these modules using a `module load` command like: + +```shell +module load Mikado/2.3.4-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Mikado/2.3.4-foss-2022b|x|x|x|x|x|x| + + +### Mikado/2.3.4-foss-2022b + +This is a list of extensions included in the module: + +marshmallow-3.14.1, marshmallow_dataclass-8.5.3, Mikado-2.3.4, mypy_extensions-1.0.0, python-rapidjson-1.10, SQLAlchemy-2.0.20, SQLAlchemy-Utils-0.41.1, typeguard-4.1.2, typing_extensions-4.7.1, typing_inspect-0.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MinCED.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MinCED.md index 5b6dfdbc56ca..3d3f96cb8079 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MinCED.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MinCED.md @@ -6,6 +6,10 @@ hide: MinCED ====== + +Mining CRISPRs in Environmental Datasets + +https://github.com/ctSkennerton/minced # Available modules @@ -17,8 +21,8 @@ To start using MinCED, load one of these modules using a `module load` command l module load MinCED/0.4.2-GCCcore-8.3.0-Java-11 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MinCED/0.4.2-GCCcore-8.3.0-Java-11|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MinCED/0.4.2-GCCcore-8.3.0-Java-11|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MinPath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MinPath.md index be93423b0951..03405724ab00 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MinPath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MinPath.md @@ -6,6 +6,10 @@ hide: MinPath ======= + +MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset. + +https://omics.informatics.indiana.edu/MinPath # Available modules @@ -17,9 +21,9 @@ To start using MinPath, load one of these modules using a `module load` command module load MinPath/1.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MinPath/1.6-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|MinPath/1.4-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MinPath/1.6-GCCcore-11.2.0|x|x|x|-|x|x| +|MinPath/1.4-intel-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Miniconda3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Miniconda3.md index b630e905147b..0fc6ccb62f9f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Miniconda3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Miniconda3.md @@ -6,6 +6,10 @@ hide: Miniconda3 ========== + +Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages. + +https://docs.conda.io/en/latest/miniconda.html # Available modules @@ -17,12 +21,12 @@ To start using Miniconda3, load one of these modules using a `module load` comma module load Miniconda3/23.5.2-0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Miniconda3/23.5.2-0|x|x|x|x|x|x|x|x| -|Miniconda3/22.11.1-1|x|x|x|x|x|x|x|x| -|Miniconda3/4.9.2|-|x|x|-|x|x|-|x| -|Miniconda3/4.8.3|-|x|x|-|x|x|-|x| -|Miniconda3/4.7.10|-|-|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Miniconda3/23.5.2-0|x|x|x|x|x|x| +|Miniconda3/22.11.1-1|x|x|x|x|x|x| +|Miniconda3/4.9.2|-|x|x|-|x|x| +|Miniconda3/4.8.3|-|x|x|-|x|x| +|Miniconda3/4.7.10|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Minipolish.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Minipolish.md index 4faea70805d3..561efc0b92bb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Minipolish.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Minipolish.md @@ -6,6 +6,10 @@ hide: Minipolish ========== + +A tool for Racon polishing of miniasm assemblies + +https://github.com/rrwick/Minipolish # Available modules @@ -17,8 +21,8 @@ To start using Minipolish, load one of these modules using a `module load` comma module load Minipolish/0.1.3-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Minipolish/0.1.3-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Minipolish/0.1.3-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MitoHiFi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MitoHiFi.md new file mode 100644 index 000000000000..efd28040b857 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MitoHiFi.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +MitoHiFi +======== + + +MitoHiFi is a Python workflow that assembles mitogenomes from Pacbio HiFi reads + +https://github.com/marcelauliano/MitoHiFi +# Available modules + + +The overview below shows which MitoHiFi installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using MitoHiFi, load one of these modules using a `module load` command like: + +```shell +module load MitoHiFi/3.2-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MitoHiFi/3.2-foss-2022b|x|x|x|x|x|x| + + +### MitoHiFi/3.2-foss-2022b + +This is a list of extensions included in the module: + +dna-features-viewer-3.1.2, MitoHiFi-3.2, mitos-2.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ModelTest-NG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ModelTest-NG.md index 59789ca8aecc..38217450a100 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ModelTest-NG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ModelTest-NG.md @@ -6,6 +6,10 @@ hide: ModelTest-NG ============ + +ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments.ModelTest-NG supersedes jModelTest and ProtTest in one single tool, with graphical and command console interfaces. + +https://github.com/ddarriba/modeltest # Available modules @@ -17,8 +21,8 @@ To start using ModelTest-NG, load one of these modules using a `module load` com module load ModelTest-NG/0.1.7-gompi-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ModelTest-NG/0.1.7-gompi-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ModelTest-NG/0.1.7-gompi-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Molden.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Molden.md index 2bcd339f66ab..ff91adb7bb64 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Molden.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Molden.md @@ -6,6 +6,10 @@ hide: Molden ====== + +Molden is a package for displaying Molecular Density from the Ab Initio packages GAMESS-UK, GAMESS-US and GAUSSIAN and the Semi-Empirical packages Mopac/Ampac + +https://www3.cmbi.umcn.nl/molden/ # Available modules @@ -17,8 +21,8 @@ To start using Molden, load one of these modules using a `module load` command l module load Molden/6.8-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Molden/6.8-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Molden/6.8-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Molekel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Molekel.md index f97e4a71b763..43e2b67e3529 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Molekel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Molekel.md @@ -6,6 +6,10 @@ hide: Molekel ======= + +Molekel is an open-source multi-platform molecular visualization program. + +http://ugovaretto.github.io/molekel/wiki/pmwiki.php/Main/HomePage.html # Available modules @@ -17,8 +21,8 @@ To start using Molekel, load one of these modules using a `module load` command module load Molekel/5.4.0-Linux_x86_64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Molekel/5.4.0-Linux_x86_64|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Molekel/5.4.0-Linux_x86_64|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Mono.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Mono.md index 831572ca385c..11f1216f69b6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Mono.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Mono.md @@ -6,6 +6,10 @@ hide: Mono ==== + +An open source, cross-platform, implementation of C# and the CLR that is binary compatible with Microsoft.NET. + +https://www.mono-project.com/ # Available modules @@ -17,8 +21,8 @@ To start using Mono, load one of these modules using a `module load` command lik module load Mono/6.8.0.105-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Mono/6.8.0.105-GCCcore-8.3.0|-|x|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Mono/6.8.0.105-GCCcore-8.3.0|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Monocle3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Monocle3.md index 646e1ca07907..706e6b974eae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Monocle3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Monocle3.md @@ -6,6 +6,10 @@ hide: Monocle3 ======== + +An analysis toolkit for single-cell RNA-seq. + +https://cole-trapnell-lab.github.io/monocle3/ # Available modules @@ -17,9 +21,22 @@ To start using Monocle3, load one of these modules using a `module load` command module load Monocle3/1.3.1-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Monocle3/1.3.1-foss-2022a-R-4.2.1|x|x|x|x|x|x| +|Monocle3/0.2.3-foss-2020b-R-4.0.3|-|x|x|x|x|x| + + +### Monocle3/1.3.1-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +biglm-0.9-2.1, furrr-0.3.1, ggrastr-1.0.1, grr-0.9.5, leidenbase-0.1.9, Matrix.utils-0.9.8, Monocle3-1.3.1, pbmcapply-1.5.1, ragg-1.2.5, RhpcBLASctl-0.21-247.1, rlang-1.0.6, rsample-1.1.1, sf-1.0-9, slider-0.3.0, spdep-1.2-7, speedglm-0.3-5, systemfonts-1.0.4, textshaping-0.3.6, uwot-0.1.14, vctrs-0.5.2, warp-0.2.0 + +### Monocle3/0.2.3-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Monocle3/1.3.1-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| -|Monocle3/0.2.3-foss-2020b-R-4.0.3|-|x|x|x|x|x|x|x| +furrr-0.2.2, grr-0.9.5, leidenbase-0.1.2, Matrix.utils-0.9.8, Monocle3-0.2.3, pbmcapply-1.5.0, RhpcBLASctl-0.20-137, rlang-0.4.10, rsample-0.0.9, sf-0.9-7, slider-0.1.5, spdep-1.1-5, speedglm-0.3-3, uwot-0.1.10, warp-0.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MrBayes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MrBayes.md index c8ebf6f6e223..d103f666dec0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MrBayes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MrBayes.md @@ -6,6 +6,10 @@ hide: MrBayes ======= + +MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. + +https://nbisweden.github.io/MrBayes/ # Available modules @@ -17,9 +21,9 @@ To start using MrBayes, load one of these modules using a `module load` command module load MrBayes/3.2.7-gompi-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MrBayes/3.2.7-gompi-2020b|-|x|x|x|x|x|x|x| -|MrBayes/3.2.6-gompi-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MrBayes/3.2.7-gompi-2020b|-|x|x|x|x|x| +|MrBayes/3.2.6-gompi-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MuJoCo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MuJoCo.md index ecca5e6fa3cb..74e37f77fdae 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MuJoCo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MuJoCo.md @@ -6,6 +6,10 @@ hide: MuJoCo ====== + +MuJoCo stands for Multi-Joint dynamics with Contact. It is a general purposephysics engine that aims to facilitate research and development in robotics,biomechanics, graphics and animation, machine learning, and other areas whichdemand fast and accurate simulation of articulated structures interacting withtheir environment. + +https://mujoco.org/ # Available modules @@ -17,9 +21,9 @@ To start using MuJoCo, load one of these modules using a `module load` command l module load MuJoCo/2.3.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MuJoCo/2.3.7-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|MuJoCo/2.1.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MuJoCo/2.3.7-GCCcore-12.3.0|x|x|x|x|x|x| +|MuJoCo/2.1.1-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MultiQC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MultiQC.md index 2c62d34f5806..d6ccba3e847e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MultiQC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MultiQC.md @@ -6,6 +6,10 @@ hide: MultiQC ======= + +Aggregate results from bioinformatics analyses across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles a HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools. + +https://multiqc.info # Available modules @@ -17,11 +21,36 @@ To start using MultiQC, load one of these modules using a `module load` command module load MultiQC/1.14-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MultiQC/1.14-foss-2022a|x|x|x|x|x|x| +|MultiQC/1.9-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|MultiQC/1.8-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|MultiQC/1.8-intel-2019b-Python-2.7.16|-|x|x|-|x|x| + + +### MultiQC/1.14-foss-2022a + +This is a list of extensions included in the module: + +coloredlogs-15.0.1, colormath-3.0.0, commonmark-0.9.1, humanfriendly-10.0, lzstring-1.0.4, Markdown-3.4.1, markdown-it-py-2.1.0, mdurl-0.1.2, multiqc-1.14, Pygments-2.14.0, rich-13.3.1, rich-click-1.6.1, spectra-0.0.11 + +### MultiQC/1.9-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.2.1, multiqc-1.9, simplejson-3.17.0, spectra-0.0.11 + +### MultiQC/1.8-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.2.1, multiqc-1.8, simplejson-3.17.0, spectra-0.0.11 + +### MultiQC/1.8-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MultiQC/1.14-foss-2022a|x|x|x|x|x|x|x|x| -|MultiQC/1.9-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|MultiQC/1.8-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|MultiQC/1.8-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +coloredlogs-14.0, colormath-3.0.0, humanfriendly-8.2, lzstring-1.0.4, Markdown-3.1.1, monotonic-1.5, multiqc-1.8, networkx-2.2, simplejson-3.17.0, spectra-0.0.11 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MultilevelEstimators.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MultilevelEstimators.md index 9956288b5026..4733b3da0678 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MultilevelEstimators.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MultilevelEstimators.md @@ -6,6 +6,10 @@ hide: MultilevelEstimators ==================== + +The Julia module for Multilevel Monte Carlo methods + +https://github.com/PieterjanRobbe/MultilevelEstimators.jl # Available modules @@ -17,8 +21,15 @@ To start using MultilevelEstimators, load one of these modules using a `module l module load MultilevelEstimators/0.1.0-GCC-11.2.0-Julia-1.7.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MultilevelEstimators/0.1.0-GCC-11.2.0-Julia-1.7.2|x|x|x|-|x|x| + + +### MultilevelEstimators/0.1.0-GCC-11.2.0-Julia-1.7.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MultilevelEstimators/0.1.0-GCC-11.2.0-Julia-1.7.2|x|x|x|-|x|x|x|x| +ChainRulesCore-1.15.6, ChangesOfVariables-0.1.4, Compat-4.3.0, DocStringExtensions-0.9.2, FileIO-1.16.0, InverseFunctions-0.1.8, IrrationalConstants-0.1.1, JLD2-0.4.24, JLLWrappers-1.4.1, LogExpFunctions-0.3.18, MacroTools-0.5.10, MultilevelEstimators-0.1.0, OpenSpecFun_jll-0.5.5+0, OrderedCollections-1.4.1, Preferences-1.3.0, Reexport-1.2.2, Requires-1.3.0, SpecialFunctions-1.8.7, TranscodingStreams-0.9.9 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Multiwfn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Multiwfn.md index 2a09cb2c5295..5b6bc4c9ddbc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Multiwfn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Multiwfn.md @@ -6,6 +6,10 @@ hide: Multiwfn ======== + +Multiwfn is an extremely powerful program for realizingi electronic wavefunction analysis, which is a key ingredient of quantum chemistry. Multiwfn is free, open-source, high-efficient, very user-friendly and flexible, it supports almost all of the most important wavefunction analysis methods. + +http://sobereva.com/multiwfn/ # Available modules @@ -17,8 +21,8 @@ To start using Multiwfn, load one of these modules using a `module load` command module load Multiwfn/3.6-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Multiwfn/3.6-intel-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Multiwfn/3.6-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/MyCC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/MyCC.md index 4199a0ea45ab..8e5bcee63c79 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/MyCC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/MyCC.md @@ -6,6 +6,10 @@ hide: MyCC ==== + +MyCC is built and delivered as a tailored solution for metagenomics sequencesclassfication. + +https://sourceforge.net/projects/sb2nhri/files/MyCC/ # Available modules @@ -17,8 +21,8 @@ To start using MyCC, load one of these modules using a `module load` command lik module load MyCC/2017-03-01-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|MyCC/2017-03-01-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|MyCC/2017-03-01-intel-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Myokit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Myokit.md index b6d475abe983..7379722a2a5d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Myokit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Myokit.md @@ -6,6 +6,10 @@ hide: Myokit ====== + +Myokit is an open-source Python-based toolkit that facilitates modeling and simulation of cardiaccellular electrophysiology. + +http://myokit.org # Available modules @@ -17,9 +21,9 @@ To start using Myokit, load one of these modules using a `module load` command l module load Myokit/1.32.0-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Myokit/1.32.0-fosscuda-2020b|-|-|-|-|x|-|-|-| -|Myokit/1.32.0-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Myokit/1.32.0-fosscuda-2020b|-|-|-|-|x|-| +|Myokit/1.32.0-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NAMD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NAMD.md index 3ab42231f05b..8037cf7b4749 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NAMD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NAMD.md @@ -6,6 +6,10 @@ hide: NAMD ==== + +NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. + +https://www.ks.uiuc.edu/Research/namd/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which NAMD installations are available per HPC-UGent Ti To start using NAMD, load one of these modules using a `module load` command like: ```shell -module load NAMD/2.14-foss-2021a-CUDA-11.3.1 +module load NAMD/2.14-foss-2023a-mpi ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NAMD/2.14-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NAMD/2.14-foss-2023a-mpi|x|x|x|x|x|x| +|NAMD/2.14-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NASM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NASM.md index 71a519d8e786..96b123fc3fd0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NASM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NASM.md @@ -6,6 +6,10 @@ hide: NASM ==== + +NASM: General-purpose x86 assembler + +https://www.nasm.us/ # Available modules @@ -14,18 +18,20 @@ The overview below shows which NASM installations are available per HPC-UGent Ti To start using NASM, load one of these modules using a `module load` command like: ```shell -module load NASM/2.15.05-GCCcore-12.2.0 +module load NASM/2.16.01-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NASM/2.15.05-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|NASM/2.15.05-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|NASM/2.15.05-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|NASM/2.15.05-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|NASM/2.15.05-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|NASM/2.14.02-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|NASM/2.14.02-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|NASM/2.14.02-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NASM/2.16.01-GCCcore-13.2.0|x|x|x|x|x|x| +|NASM/2.16.01-GCCcore-12.3.0|x|x|x|x|x|x| +|NASM/2.15.05-GCCcore-12.2.0|x|x|x|x|x|x| +|NASM/2.15.05-GCCcore-11.3.0|x|x|x|x|x|x| +|NASM/2.15.05-GCCcore-11.2.0|x|x|x|x|x|x| +|NASM/2.15.05-GCCcore-10.3.0|x|x|x|x|x|x| +|NASM/2.15.05-GCCcore-10.2.0|x|x|x|x|x|x| +|NASM/2.14.02-GCCcore-9.3.0|-|x|x|-|x|x| +|NASM/2.14.02-GCCcore-8.3.0|x|x|x|-|x|x| +|NASM/2.14.02-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NCCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NCCL.md index ce8e2bfe40d4..a973e76f4563 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NCCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NCCL.md @@ -6,6 +6,10 @@ hide: NCCL ==== + +The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collectivecommunication primitives that are performance optimized for NVIDIA GPUs. + +https://developer.nvidia.com/nccl # Available modules @@ -14,15 +18,16 @@ The overview below shows which NCCL installations are available per HPC-UGent Ti To start using NCCL, load one of these modules using a `module load` command like: ```shell -module load NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0 +module load NCCL/2.18.3-GCCcore-12.3.0-CUDA-12.1.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0|x|-|x|-|x|-|-|-| -|NCCL/2.10.3-GCCcore-11.2.0-CUDA-11.4.1|x|-|-|-|x|-|-|-| -|NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|NCCL/2.8.3-GCCcore-10.2.0-CUDA-11.1.1|x|-|-|-|x|x|-|x| -|NCCL/2.8.3-CUDA-11.1.1|-|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NCCL/2.18.3-GCCcore-12.3.0-CUDA-12.1.1|x|-|x|-|x|-| +|NCCL/2.12.12-GCCcore-11.3.0-CUDA-11.7.0|x|-|x|-|x|-| +|NCCL/2.10.3-GCCcore-11.2.0-CUDA-11.4.1|x|-|-|-|x|-| +|NCCL/2.10.3-GCCcore-10.3.0-CUDA-11.3.1|x|-|-|-|x|-| +|NCCL/2.8.3-GCCcore-10.2.0-CUDA-11.1.1|x|-|-|-|x|x| +|NCCL/2.8.3-CUDA-11.1.1|-|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NCL.md index bbc6ad27cc46..39dd6829e480 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NCL.md @@ -6,6 +6,10 @@ hide: NCL === + +NCL is an interpreted language designed specifically for scientific data analysis and visualization. + +https://www.ncl.ucar.edu # Available modules @@ -17,8 +21,8 @@ To start using NCL, load one of these modules using a `module load` command like module load NCL/6.6.2-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NCL/6.6.2-intel-2019b|-|-|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NCL/6.6.2-intel-2019b|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NCO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NCO.md index 61b9708155db..eceae749aa84 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NCO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NCO.md @@ -6,6 +6,10 @@ hide: NCO === + +manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5 + +https://nco.sourceforge.net # Available modules @@ -17,9 +21,9 @@ To start using NCO, load one of these modules using a `module load` command like module load NCO/5.0.6-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NCO/5.0.6-intel-2019b|-|x|x|-|x|x|x|x| -|NCO/5.0.1-foss-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NCO/5.0.6-intel-2019b|-|x|x|-|x|x| +|NCO/5.0.1-foss-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NECI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NECI.md index bced6db1871e..387c9b6cde3a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NECI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NECI.md @@ -6,6 +6,10 @@ hide: NECI ==== + +Standalone NECI codebase designed for FCIQMC and other stochastic quantumchemistry methods. + +https://github.com/ghb24/NECI_STABLE # Available modules @@ -14,11 +18,12 @@ The overview below shows which NECI installations are available per HPC-UGent Ti To start using NECI, load one of these modules using a `module load` command like: ```shell -module load NECI/20220711-foss-2022a +module load NECI/20230620-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NECI/20220711-foss-2022a|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NECI/20230620-foss-2022b|x|x|x|x|x|x| +|NECI/20220711-foss-2022a|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NEURON.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NEURON.md index 03ed0c76d21b..716918947186 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NEURON.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NEURON.md @@ -6,6 +6,10 @@ hide: NEURON ====== + +Empirically-based simulations of neurons and networks of neurons. + +https://www.neuron.yale.edu/neuron # Available modules @@ -17,8 +21,8 @@ To start using NEURON, load one of these modules using a `module load` command l module load NEURON/7.8.2-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NEURON/7.8.2-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NEURON/7.8.2-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NGS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NGS.md index fbdb86fa546f..bf79b6c30bbc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NGS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NGS.md @@ -6,6 +6,10 @@ hide: NGS === + +NGS is a new, domain-specific API for accessing reads, alignments and pileupsproduced from Next Generation Sequencing. + +https://github.com/ncbi/ngs # Available modules @@ -17,11 +21,11 @@ To start using NGS, load one of these modules using a `module load` command like module load NGS/2.11.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NGS/2.11.2-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|NGS/2.10.9-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|NGS/2.10.5-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|NGS/2.10.4-GCCcore-8.3.0-Java-11|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NGS/2.11.2-GCCcore-11.2.0|x|x|x|x|x|x| +|NGS/2.10.9-GCCcore-10.2.0|-|x|x|x|x|x| +|NGS/2.10.5-GCCcore-9.3.0|-|x|x|-|x|x| +|NGS/2.10.4-GCCcore-8.3.0-Java-11|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NGSpeciesID.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NGSpeciesID.md index 8e08e5cc7ebf..92cfe9af2820 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NGSpeciesID.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NGSpeciesID.md @@ -6,6 +6,10 @@ hide: NGSpeciesID =========== + +NGSpeciesID is a tool for clustering and consensus forming of targeted ONT reads. + +https://github.com/ksahlin/NGSpeciesID # Available modules @@ -17,9 +21,9 @@ To start using NGSpeciesID, load one of these modules using a `module load` comm module load NGSpeciesID/0.1.2.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NGSpeciesID/0.1.2.1-foss-2021b|x|x|x|-|x|x|x|x| -|NGSpeciesID/0.1.1.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NGSpeciesID/0.1.2.1-foss-2021b|x|x|x|-|x|x| +|NGSpeciesID/0.1.1.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NLMpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NLMpy.md index 362fcaa69f04..827b84f1286c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NLMpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NLMpy.md @@ -6,6 +6,10 @@ hide: NLMpy ===== + +NLMpy is a Python package for the creation of neutral landscape models that are widely used in the modelling of ecological patterns and processes across landscapes. + +https://pypi.org/project/nlmpy # Available modules @@ -17,8 +21,8 @@ To start using NLMpy, load one of these modules using a `module load` command li module load NLMpy/0.1.5-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NLMpy/0.1.5-intel-2019b-Python-3.7.4|-|x|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NLMpy/0.1.5-intel-2019b-Python-3.7.4|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NLTK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NLTK.md new file mode 100644 index 000000000000..c52c7e988958 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NLTK.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +NLTK +==== + + +NLTK is a leading platform for building Python programs to work with human language data. + +https://www.nltk.org/ +# Available modules + + +The overview below shows which NLTK installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using NLTK, load one of these modules using a `module load` command like: + +```shell +module load NLTK/3.8.1-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NLTK/3.8.1-foss-2022b|x|x|x|x|x|x| + + +### NLTK/3.8.1-foss-2022b + +This is a list of extensions included in the module: + +NLTK-3.8.1, python-crfsuite-0.9.10, regex-2023.12.25 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NLopt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NLopt.md index e86e59b1cfa3..e3f1e999ca33 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NLopt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NLopt.md @@ -6,6 +6,10 @@ hide: NLopt ===== + +NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms. + +http://ab-initio.mit.edu/wiki/index.php/NLopt # Available modules @@ -14,17 +18,18 @@ The overview below shows which NLopt installations are available per HPC-UGent T To start using NLopt, load one of these modules using a `module load` command like: ```shell -module load NLopt/2.7.1-GCCcore-12.2.0 +module load NLopt/2.7.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NLopt/2.7.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|NLopt/2.7.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|NLopt/2.7.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|NLopt/2.7.0-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|NLopt/2.6.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|NLopt/2.6.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|NLopt/2.6.1-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NLopt/2.7.1-GCCcore-12.3.0|x|x|x|x|x|x| +|NLopt/2.7.1-GCCcore-12.2.0|x|x|x|x|x|x| +|NLopt/2.7.1-GCCcore-11.3.0|x|x|x|x|x|x| +|NLopt/2.7.0-GCCcore-11.2.0|x|x|x|x|x|x| +|NLopt/2.7.0-GCCcore-10.3.0|x|x|x|x|x|x| +|NLopt/2.6.2-GCCcore-10.2.0|x|x|x|x|x|x| +|NLopt/2.6.1-GCCcore-9.3.0|-|x|x|-|x|x| +|NLopt/2.6.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NOVOPlasty.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NOVOPlasty.md index 4912e80fc99e..9d26694d5e61 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NOVOPlasty.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NOVOPlasty.md @@ -6,6 +6,10 @@ hide: NOVOPlasty ========== + +NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes. + +https://github.com/ndierckx/NOVOPlasty # Available modules @@ -17,8 +21,8 @@ To start using NOVOPlasty, load one of these modules using a `module load` comma module load NOVOPlasty/3.7-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NOVOPlasty/3.7-GCCcore-8.3.0|-|x|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NOVOPlasty/3.7-GCCcore-8.3.0|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NSPR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NSPR.md index 21041b24c435..cb5e6f0ee455 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NSPR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NSPR.md @@ -6,6 +6,10 @@ hide: NSPR ==== + +Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions. + +https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSPR # Available modules @@ -14,17 +18,18 @@ The overview below shows which NSPR installations are available per HPC-UGent Ti To start using NSPR, load one of these modules using a `module load` command like: ```shell -module load NSPR/4.35-GCCcore-12.2.0 +module load NSPR/4.35-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NSPR/4.35-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|NSPR/4.34-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|NSPR/4.32-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|NSPR/4.30-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|NSPR/4.29-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|NSPR/4.25-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|NSPR/4.21-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NSPR/4.35-GCCcore-12.3.0|x|x|x|x|x|x| +|NSPR/4.35-GCCcore-12.2.0|x|x|x|x|x|x| +|NSPR/4.34-GCCcore-11.3.0|x|x|x|x|x|x| +|NSPR/4.32-GCCcore-11.2.0|x|x|x|x|x|x| +|NSPR/4.30-GCCcore-10.3.0|x|x|x|x|x|x| +|NSPR/4.29-GCCcore-10.2.0|x|x|x|x|x|x| +|NSPR/4.25-GCCcore-9.3.0|-|x|x|-|x|x| +|NSPR/4.21-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NSS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NSS.md index 10051eae89c0..1c6fdb69062c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NSS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NSS.md @@ -6,6 +6,10 @@ hide: NSS === + +Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications. + +https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS # Available modules @@ -14,17 +18,18 @@ The overview below shows which NSS installations are available per HPC-UGent Tie To start using NSS, load one of these modules using a `module load` command like: ```shell -module load NSS/3.85-GCCcore-12.2.0 +module load NSS/3.89.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NSS/3.85-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|NSS/3.79-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|NSS/3.69-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|NSS/3.65-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|NSS/3.57-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|NSS/3.51-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|NSS/3.45-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NSS/3.89.1-GCCcore-12.3.0|x|x|x|x|x|x| +|NSS/3.85-GCCcore-12.2.0|x|x|x|x|x|x| +|NSS/3.79-GCCcore-11.3.0|x|x|x|x|x|x| +|NSS/3.69-GCCcore-11.2.0|x|x|x|x|x|x| +|NSS/3.65-GCCcore-10.3.0|x|x|x|x|x|x| +|NSS/3.57-GCCcore-10.2.0|x|x|x|x|x|x| +|NSS/3.51-GCCcore-9.3.0|-|x|x|-|x|x| +|NSS/3.45-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NVHPC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NVHPC.md index 780500b0d6f0..0a5ab7102061 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NVHPC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NVHPC.md @@ -6,6 +6,10 @@ hide: NVHPC ===== + +C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI) + +https://developer.nvidia.com/hpc-sdk/ # Available modules @@ -17,9 +21,9 @@ To start using NVHPC, load one of these modules using a `module load` command li module load NVHPC/21.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NVHPC/21.2|x|-|x|-|x|-|-|-| -|NVHPC/20.9|-|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NVHPC/21.2|x|-|x|-|x|-| +|NVHPC/20.9|-|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoCaller.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoCaller.md new file mode 100644 index 000000000000..f4c1f5ba4295 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoCaller.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +NanoCaller +========== + + +NanoCaller is a computational method that integrates long reads in deep convolutional neural network for the detection of SNPs/indels from long-read sequencing data. + +https://github.com/WGLab/NanoCaller +# Available modules + + +The overview below shows which NanoCaller installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using NanoCaller, load one of these modules using a `module load` command like: + +```shell +module load NanoCaller/3.4.1-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NanoCaller/3.4.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoComp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoComp.md index 374c73664599..321c7002423e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoComp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoComp.md @@ -6,6 +6,10 @@ hide: NanoComp ======== + +Comparing runs of Oxford Nanopore sequencing data and alignments + +https://github.com/wdecoster/NanoComp # Available modules @@ -17,9 +21,9 @@ To start using NanoComp, load one of these modules using a `module load` command module load NanoComp/1.13.1-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NanoComp/1.13.1-intel-2020b|-|x|x|-|x|x|x|x| -|NanoComp/1.10.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NanoComp/1.13.1-intel-2020b|-|x|x|-|x|x| +|NanoComp/1.10.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoFilt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoFilt.md index d3fc61d5ad59..944d6146ff01 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoFilt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoFilt.md @@ -6,6 +6,10 @@ hide: NanoFilt ======== + +Filtering and trimming of Oxford Nanopore Sequencing data + +https://github.com/wdecoster/nanofilt # Available modules @@ -17,8 +21,8 @@ To start using NanoFilt, load one of these modules using a `module load` command module load NanoFilt/2.6.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NanoFilt/2.6.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NanoFilt/2.6.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoPlot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoPlot.md index 88b587448a48..9803905ffbd2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoPlot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoPlot.md @@ -6,6 +6,10 @@ hide: NanoPlot ======== + +Plotting suite for long read sequencing data and alignments + +https://github.com/wdecoster/NanoPlot # Available modules @@ -17,9 +21,9 @@ To start using NanoPlot, load one of these modules using a `module load` command module load NanoPlot/1.33.0-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NanoPlot/1.33.0-intel-2020b|-|x|x|-|x|x|x|x| -|NanoPlot/1.28.4-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NanoPlot/1.33.0-intel-2020b|-|x|x|-|x|x| +|NanoPlot/1.28.4-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoStat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoStat.md index e4955ebd0477..bcfd786d5420 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanoStat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanoStat.md @@ -6,6 +6,10 @@ hide: NanoStat ======== + +Calculate various statistics from a long read sequencing dataset in fastq, bam or albacore sequencing summary format. + +https://github.com/wdecoster/nanostat # Available modules @@ -17,9 +21,22 @@ To start using NanoStat, load one of these modules using a `module load` command module load NanoStat/1.6.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NanoStat/1.6.0-foss-2022a|x|x|x|x|x|x| +|NanoStat/1.6.0-foss-2021a|x|x|x|x|x|x| + + +### NanoStat/1.6.0-foss-2022a + +This is a list of extensions included in the module: + +NanoStat-1.6.0 + +### NanoStat/1.6.0-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NanoStat/1.6.0-foss-2022a|x|x|x|x|x|x|x|x| -|NanoStat/1.6.0-foss-2021a|x|x|x|x|x|x|x|x| +NanoStat-1.6.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NanopolishComp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NanopolishComp.md index adc773d63fe9..1ad478de9b4c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NanopolishComp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NanopolishComp.md @@ -6,6 +6,10 @@ hide: NanopolishComp ============== + +NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files + +https://adrienleger.com/NanopolishComp/ # Available modules @@ -17,8 +21,8 @@ To start using NanopolishComp, load one of these modules using a `module load` c module load NanopolishComp/0.6.11-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NanopolishComp/0.6.11-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NanopolishComp/0.6.11-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NetPyNE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NetPyNE.md index 76b930d3d08b..8d9fdf127fd7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NetPyNE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NetPyNE.md @@ -6,6 +6,10 @@ hide: NetPyNE ======= + +NetPyNE is an open-source Python package to facilitate the development, parallel simulation, analysis,and optimization of biological neuronal networks using the NEURON simulator. + +http://www.netpyne.org # Available modules @@ -17,8 +21,15 @@ To start using NetPyNE, load one of these modules using a `module load` command module load NetPyNE/1.0.2.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NetPyNE/1.0.2.1-foss-2021b|x|x|x|-|x|x| + + +### NetPyNE/1.0.2.1-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NetPyNE/1.0.2.1-foss-2021b|x|x|x|-|x|x|x|x| +contextlib2-21.6.0, LFPykit-0.4, matplotlib-scalebar-0.8.1, MEAutility-1.5.1, netpyne-1.0.2.1, schema-0.7.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NewHybrids.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NewHybrids.md index 42845dcd63c2..eb2d8a4da2ef 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NewHybrids.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NewHybrids.md @@ -6,6 +6,10 @@ hide: NewHybrids ========== + +This implements a Gibbs sampler to estimate the posterior probability that genetically sampledindividuals fall into each of a set of user-defined hybrid categories. + +https://ib.berkeley.edu/labs/slatkin/eriq/software/software.htm#NewHybs # Available modules @@ -17,8 +21,8 @@ To start using NewHybrids, load one of these modules using a `module load` comma module load NewHybrids/1.1_Beta3-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NewHybrids/1.1_Beta3-GCC-10.2.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NewHybrids/1.1_Beta3-GCC-10.2.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md index 2b7626df8e32..1afdd68ad11a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NextGenMap.md @@ -6,6 +6,10 @@ hide: NextGenMap ========== + +NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. + +http://cibiv.github.io/NextGenMap/ # Available modules @@ -17,8 +21,8 @@ To start using NextGenMap, load one of these modules using a `module load` comma module load NextGenMap/0.5.5-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NextGenMap/0.5.5-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NextGenMap/0.5.5-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Nextflow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Nextflow.md index c19508577cf9..b79cffe5c60e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Nextflow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Nextflow.md @@ -6,6 +6,10 @@ hide: Nextflow ======== + +Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data + +https://www.nextflow.io # Available modules @@ -14,20 +18,21 @@ The overview below shows which Nextflow installations are available per HPC-UGen To start using Nextflow, load one of these modules using a `module load` command like: ```shell -module load Nextflow/23.04.2 +module load Nextflow/23.10.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Nextflow/23.04.2|x|x|x|x|x|x|x|x| -|Nextflow/22.10.5|x|x|x|x|x|x|x|x| -|Nextflow/22.10.0|x|x|x|-|x|x|x|x| -|Nextflow/21.10.6|-|x|x|-|x|x|x|x| -|Nextflow/21.08.0|-|-|-|-|-|x|-|x| -|Nextflow/21.03.0|-|x|x|-|x|x|-|x| -|Nextflow/20.10.0|-|x|x|-|x|x|-|x| -|Nextflow/20.04.1|-|-|x|-|x|x|-|x| -|Nextflow/20.01.0|-|-|x|-|x|x|-|x| -|Nextflow/19.12.0|-|-|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Nextflow/23.10.0|x|x|x|x|x|x| +|Nextflow/23.04.2|x|x|x|x|x|x| +|Nextflow/22.10.5|x|x|x|x|x|x| +|Nextflow/22.10.0|x|x|x|-|x|x| +|Nextflow/21.10.6|-|x|x|-|x|x| +|Nextflow/21.08.0|-|-|-|-|-|x| +|Nextflow/21.03.0|-|x|x|-|x|x| +|Nextflow/20.10.0|-|x|x|-|x|x| +|Nextflow/20.04.1|-|-|x|-|x|x| +|Nextflow/20.01.0|-|-|x|-|x|x| +|Nextflow/19.12.0|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/NiBabel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/NiBabel.md index b78a9af33629..dce64f9befab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/NiBabel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/NiBabel.md @@ -6,6 +6,10 @@ hide: NiBabel ======= + +NiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI. + +https://nipy.github.io/nibabel # Available modules @@ -17,12 +21,43 @@ To start using NiBabel, load one of these modules using a `module load` command module load NiBabel/4.0.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|NiBabel/4.0.2-foss-2022a|x|x|x|x|x|x| +|NiBabel/3.2.1-fosscuda-2020b|x|-|-|-|x|-| +|NiBabel/3.2.1-foss-2021a|x|x|x|-|x|x| +|NiBabel/3.2.1-foss-2020b|-|x|x|x|x|x| +|NiBabel/3.1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### NiBabel/4.0.2-foss-2022a + +This is a list of extensions included in the module: + +bz2file-0.98, nibabel-4.0.2 + +### NiBabel/3.2.1-fosscuda-2020b + +This is a list of extensions included in the module: + +bz2file-0.98, nibabel-3.2.1 + +### NiBabel/3.2.1-foss-2021a + +This is a list of extensions included in the module: + +bz2file-0.98, nibabel-3.2.1 + +### NiBabel/3.2.1-foss-2020b + +This is a list of extensions included in the module: + +bz2file-0.98, nibabel-3.2.1 + +### NiBabel/3.1.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|NiBabel/4.0.2-foss-2022a|x|x|x|x|x|x|x|x| -|NiBabel/3.2.1-fosscuda-2020b|x|-|-|-|x|-|-|-| -|NiBabel/3.2.1-foss-2021a|x|x|x|-|x|x|x|x| -|NiBabel/3.2.1-foss-2020b|-|x|x|x|x|x|x|x| -|NiBabel/3.1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +bz2file-0.98, nibabel-3.1.0, pydicom-1.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Nim.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Nim.md index 3f47fdd4a72e..b743d1cd6010 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Nim.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Nim.md @@ -6,6 +6,10 @@ hide: Nim === + +Nim is a systems and applications programming language. + +https://nim-lang.org/ # Available modules @@ -17,9 +21,9 @@ To start using Nim, load one of these modules using a `module load` command like module load Nim/1.6.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Nim/1.6.6-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Nim/1.4.6-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Nim/1.6.6-GCCcore-11.2.0|x|x|x|-|x|x| +|Nim/1.4.6-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ninja.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ninja.md index 44bd598ef4af..3dcc731f55f0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ninja.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ninja.md @@ -6,6 +6,10 @@ hide: Ninja ===== + +Ninja is a small build system with a focus on speed. + +https://ninja-build.org/ # Available modules @@ -14,19 +18,20 @@ The overview below shows which Ninja installations are available per HPC-UGent T To start using Ninja, load one of these modules using a `module load` command like: ```shell -module load Ninja/1.11.1-GCCcore-12.3.0 +module load Ninja/1.11.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Ninja/1.11.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Ninja/1.11.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Ninja/1.10.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Ninja/1.10.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Ninja/1.10.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Ninja/1.10.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Ninja/1.10.0-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Ninja/1.9.0-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|Ninja/1.9.0-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Ninja/1.11.1-GCCcore-13.2.0|x|x|x|x|x|x| +|Ninja/1.11.1-GCCcore-12.3.0|x|x|x|x|x|x| +|Ninja/1.11.1-GCCcore-12.2.0|x|x|x|x|x|x| +|Ninja/1.10.2-GCCcore-11.3.0|x|x|x|x|x|x| +|Ninja/1.10.2-GCCcore-11.2.0|x|x|x|x|x|x| +|Ninja/1.10.2-GCCcore-10.3.0|x|x|x|x|x|x| +|Ninja/1.10.1-GCCcore-10.2.0|x|x|x|x|x|x| +|Ninja/1.10.0-GCCcore-9.3.0|x|x|x|x|x|x| +|Ninja/1.9.0-GCCcore-8.3.0|x|x|x|-|x|x| +|Ninja/1.9.0-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Nipype.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Nipype.md index ec5ba31ba08b..ba01f3b57f3c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Nipype.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Nipype.md @@ -6,6 +6,10 @@ hide: Nipype ====== + +Nipype is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. + +https://nipype.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using Nipype, load one of these modules using a `module load` command l module load Nipype/1.8.5-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Nipype/1.8.5-foss-2021a|x|x|x|-|x|x| +|Nipype/1.4.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### Nipype/1.8.5-foss-2021a + +This is a list of extensions included in the module: + +ci-info-0.3.0, etelemetry-0.3.0, funcsigs-1.0.2, looseversion-1.0.2, nipype-1.8.5, prov-2.0.0, pydotplus-2.0.2, traits-6.3.2 + +### Nipype/1.4.2-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Nipype/1.8.5-foss-2021a|x|x|x|-|x|x|x|x| -|Nipype/1.4.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +apipkg-1.5, ci-info-0.2.0, etelemetry-0.2.1, execnet-1.7.1, filelock-3.0.12, funcsigs-1.0.2, isodate-0.6.0, nipype-1.4.2, prov-1.5.3, pydot-1.4.1, pydotplus-2.0.2, pytest-forked-1.1.3, pytest-xdist-1.31.0, rdflib-5.0.0, simplejson-3.17.0, traits-6.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OBITools3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OBITools3.md new file mode 100644 index 000000000000..8738355ef587 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OBITools3.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +OBITools3 +========= + + +A package for the management of analyses and data in DNA metabarcoding. + +https://metabarcoding.org/obitools3 +# Available modules + + +The overview below shows which OBITools3 installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using OBITools3, load one of these modules using a `module load` command like: + +```shell +module load OBITools3/3.0.1b26-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OBITools3/3.0.1b26-GCCcore-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX-Runtime.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX-Runtime.md new file mode 100644 index 000000000000..b553cc411e9d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX-Runtime.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +ONNX-Runtime +============ + + +ONNX Runtime inference can enable faster customer experiences and lower costs,supporting models from deep learning frameworks such as PyTorch andTensorFlow/Keras as well as classical machine learning libraries such asscikit-learn, LightGBM, XGBoost, etc. ONNX Runtime is compatible with differenthardware, drivers, and operating systems, and provides optimal performance byleveraging hardware accelerators where applicable alongside graph optimizationsand transforms. + +https://onnxruntime.ai +# Available modules + + +The overview below shows which ONNX-Runtime installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using ONNX-Runtime, load one of these modules using a `module load` command like: + +```shell +module load ONNX-Runtime/1.16.3-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ONNX-Runtime/1.16.3-foss-2022b|x|x|x|x|x|x| + + +### ONNX-Runtime/1.16.3-foss-2022b + +This is a list of extensions included in the module: + +coloredlogs-15.0.1, humanfriendly-10.0, ONNX-Runtime-1.16.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX.md new file mode 100644 index 000000000000..b47bafa17d93 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ONNX.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +ONNX +==== + + +Open Neural Network Exchange (ONNX) is an open ecosystem that empowers AIdevelopers to choose the right tools as their project evolves. ONNX provides anopen source format for AI models, both deep learning and traditional ML. Itdefines an extensible computation graph model, as well as definitions ofbuilt-in operators and standard data types. Currently we focus on thecapabilities needed for inferencing (scoring). + +https://onnx.ai +# Available modules + + +The overview below shows which ONNX installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using ONNX, load one of these modules using a `module load` command like: + +```shell +module load ONNX/1.15.0-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ONNX/1.15.0-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OPERA-MS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OPERA-MS.md index d490005ed160..26d8254e1a94 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OPERA-MS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OPERA-MS.md @@ -6,6 +6,10 @@ hide: OPERA-MS ======== + +OPERA-MS is a hybrid metagenomic assembler which combines the advantages of short and long-read technologies to provide high quality assemblies, addressing issues of low contiguity for short-read only assemblies, and low base-pair quality for long-read only assemblies. + +https://github.com/CSB5/OPERA-MS # Available modules @@ -17,8 +21,8 @@ To start using OPERA-MS, load one of these modules using a `module load` command module load OPERA-MS/0.9.0-20200802-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OPERA-MS/0.9.0-20200802-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OPERA-MS/0.9.0-20200802-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ORCA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ORCA.md index 342acea0c01e..0a4e4e947a2e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ORCA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ORCA.md @@ -6,6 +6,10 @@ hide: ORCA ==== + +ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects. + +https://orcaforum.kofo.mpg.de # Available modules @@ -17,12 +21,12 @@ To start using ORCA, load one of these modules using a `module load` command lik module load ORCA/5.0.4-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ORCA/5.0.4-gompi-2022a|x|x|x|x|x|x|x|x| -|ORCA/5.0.3-gompi-2021b|x|x|x|x|x|x|x|x| -|ORCA/5.0.2-gompi-2021b|x|x|x|x|x|x|x|x| -|ORCA/4.2.1-gompi-2019b|-|x|x|-|x|x|-|x| -|ORCA/4.2.0-gompi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ORCA/5.0.4-gompi-2022a|x|x|x|x|x|x| +|ORCA/5.0.3-gompi-2021b|x|x|x|x|x|x| +|ORCA/5.0.2-gompi-2021b|x|x|x|x|x|x| +|ORCA/4.2.1-gompi-2019b|-|x|x|-|x|x| +|ORCA/4.2.0-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OSU-Micro-Benchmarks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OSU-Micro-Benchmarks.md index a092fa3ca684..345993b512da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OSU-Micro-Benchmarks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OSU-Micro-Benchmarks.md @@ -6,6 +6,10 @@ hide: OSU-Micro-Benchmarks ==================== + +OSU Micro-Benchmarks + +https://mvapich.cse.ohio-state.edu/benchmarks/ # Available modules @@ -14,22 +18,25 @@ The overview below shows which OSU-Micro-Benchmarks installations are available To start using OSU-Micro-Benchmarks, load one of these modules using a `module load` command like: ```shell -module load OSU-Micro-Benchmarks/5.8-iimpi-2021b +module load OSU-Micro-Benchmarks/7.2-gompi-2023b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OSU-Micro-Benchmarks/5.8-iimpi-2021b|x|x|x|-|x|x|x|x| -|OSU-Micro-Benchmarks/5.7.1-iompi-2021a|-|-|x|-|x|x|x|x| -|OSU-Micro-Benchmarks/5.7.1-iimpi-2021a|-|-|x|-|x|x|x|x| -|OSU-Micro-Benchmarks/5.7.1-gompi-2021b|x|x|x|-|x|x|x|x| -|OSU-Micro-Benchmarks/5.7-iimpi-2020b|-|-|x|x|x|x|x|x| -|OSU-Micro-Benchmarks/5.7-gompi-2020b|-|-|x|x|x|x|x|x| -|OSU-Micro-Benchmarks/5.6.3-iimpi-2020b|-|x|x|x|x|x|x|x| -|OSU-Micro-Benchmarks/5.6.3-iimpi-2020a|-|x|x|-|x|x|x|x| -|OSU-Micro-Benchmarks/5.6.3-iimpi-2019b|-|x|x|-|x|x|x|x| -|OSU-Micro-Benchmarks/5.6.3-gompi-2020b|-|-|x|x|x|x|x|x| -|OSU-Micro-Benchmarks/5.6.3-gompi-2020a|-|x|x|-|x|x|x|x| -|OSU-Micro-Benchmarks/5.6.3-gompi-2019b|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OSU-Micro-Benchmarks/7.2-gompi-2023b|x|x|x|x|x|x| +|OSU-Micro-Benchmarks/7.1-1-iimpi-2023a|x|x|x|x|x|x| +|OSU-Micro-Benchmarks/7.1-1-gompi-2023a|-|x|-|-|-|-| +|OSU-Micro-Benchmarks/5.8-iimpi-2021b|x|x|x|-|x|x| +|OSU-Micro-Benchmarks/5.7.1-iompi-2021a|-|-|x|-|x|x| +|OSU-Micro-Benchmarks/5.7.1-iimpi-2021a|-|-|x|-|x|x| +|OSU-Micro-Benchmarks/5.7.1-gompi-2021b|x|x|x|-|x|x| +|OSU-Micro-Benchmarks/5.7-iimpi-2020b|-|-|x|x|x|x| +|OSU-Micro-Benchmarks/5.7-gompi-2020b|-|-|x|x|x|x| +|OSU-Micro-Benchmarks/5.6.3-iimpi-2020b|-|x|x|x|x|x| +|OSU-Micro-Benchmarks/5.6.3-iimpi-2020a|-|x|x|-|x|x| +|OSU-Micro-Benchmarks/5.6.3-iimpi-2019b|-|x|x|-|x|x| +|OSU-Micro-Benchmarks/5.6.3-gompi-2020b|-|-|x|x|x|x| +|OSU-Micro-Benchmarks/5.6.3-gompi-2020a|-|x|x|-|x|x| +|OSU-Micro-Benchmarks/5.6.3-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Oases.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Oases.md new file mode 100644 index 000000000000..e2e3c1c1094d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Oases.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Oases +===== + + +Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. + +http://www.ebi.ac.uk/~zerbino/oases/ +# Available modules + + +The overview below shows which Oases installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Oases, load one of these modules using a `module load` command like: + +```shell +module load Oases/20180312-GCC-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Oases/20180312-GCC-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Omnipose.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Omnipose.md index b230e747d50f..6cd35ecc6197 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Omnipose.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Omnipose.md @@ -6,6 +6,10 @@ hide: Omnipose ======== + +Omnipose is a general image segmentation tool that builds on Cellpose in a number of waysdescribed in our paper. It works for both 2D and 3D images and on any imaging modality orcell shape, so long as you train it on representative images. + +https://omnipose.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using Omnipose, load one of these modules using a `module load` command module load Omnipose/0.4.4-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Omnipose/0.4.4-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|Omnipose/0.4.4-foss-2022a|x|x|x|x|x|x| + + +### Omnipose/0.4.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +cachetools-5.3.1, cellpose-omni-0.9.1, edt-2.3.1, fastremap-1.13.5, google-api-core-2.11.1, google-auth-2.22.0, google-cloud-core-2.3.3, google-cloud-storage-2.10.0, google-crc32c-1.5.0, google-resumable-media-2.5.0, googleapis-common-protos-1.59.1, natsort-8.3.1, omnipose-0.4.4, pyasn1-modules-0.2.8, roifile-2023.5.12, rsa-4.9, tifffile-2023.4.12 + +### Omnipose/0.4.4-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Omnipose/0.4.4-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|Omnipose/0.4.4-foss-2022a|x|x|x|x|x|x|x|x| +cachetools-5.3.1, cellpose-omni-0.9.1, edt-2.3.1, fastremap-1.13.5, google-api-core-2.11.1, google-auth-2.22.0, google-cloud-core-2.3.3, google-cloud-storage-2.10.0, google-crc32c-1.5.0, google-resumable-media-2.5.0, googleapis-common-protos-1.59.1, natsort-8.3.1, omnipose-0.4.4, pyasn1-modules-0.2.8, roifile-2023.5.12, rsa-4.9, tifffile-2023.4.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenAI-Gym.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenAI-Gym.md index 359fc2751e9f..5f50bf1fc1b0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenAI-Gym.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenAI-Gym.md @@ -6,6 +6,10 @@ hide: OpenAI-Gym ========== + +A toolkit for developing and comparing reinforcement learning algorithms. + +https://gym.openai.com # Available modules @@ -17,8 +21,15 @@ To start using OpenAI-Gym, load one of these modules using a `module load` comma module load OpenAI-Gym/0.17.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenAI-Gym/0.17.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### OpenAI-Gym/0.17.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenAI-Gym/0.17.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +atari-py-0.2.6, box2d-py-2.3.8, cloudpickle-1.3.0, gym-0.17.1, imageio-2.8.0, pyglet-1.4.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBLAS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBLAS.md index 641664eecf9c..84dec28c85e7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBLAS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBLAS.md @@ -6,6 +6,10 @@ hide: OpenBLAS ======== + +OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. + +https://xianyi.github.com/OpenBLAS/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which OpenBLAS installations are available per HPC-UGen To start using OpenBLAS, load one of these modules using a `module load` command like: ```shell -module load OpenBLAS/0.3.23-GCC-12.3.0 +module load OpenBLAS/0.3.24-GCC-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenBLAS/0.3.23-GCC-12.3.0|x|x|x|x|x|x|x|x| -|OpenBLAS/0.3.21-GCC-12.2.0|x|x|x|x|x|x|x|x| -|OpenBLAS/0.3.20-GCC-11.3.0|x|x|x|x|x|x|x|x| -|OpenBLAS/0.3.18-GCC-11.2.0|x|x|x|x|x|x|x|x| -|OpenBLAS/0.3.15-GCC-10.3.0|x|x|x|x|x|x|x|x| -|OpenBLAS/0.3.12-GCC-10.2.0|x|x|x|x|x|x|x|x| -|OpenBLAS/0.3.9-GCC-9.3.0|-|x|x|-|x|x|x|x| -|OpenBLAS/0.3.7-GCC-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenBLAS/0.3.24-GCC-13.2.0|x|x|x|x|x|x| +|OpenBLAS/0.3.23-GCC-12.3.0|x|x|x|x|x|x| +|OpenBLAS/0.3.21-GCC-12.2.0|x|x|x|x|x|x| +|OpenBLAS/0.3.20-GCC-11.3.0|x|x|x|x|x|x| +|OpenBLAS/0.3.18-GCC-11.2.0|x|x|x|x|x|x| +|OpenBLAS/0.3.15-GCC-10.3.0|x|x|x|x|x|x| +|OpenBLAS/0.3.12-GCC-10.2.0|x|x|x|x|x|x| +|OpenBLAS/0.3.9-GCC-9.3.0|-|x|x|-|x|x| +|OpenBLAS/0.3.7-GCC-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBabel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBabel.md index f0a37a20222b..95dae001df27 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBabel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenBabel.md @@ -6,6 +6,10 @@ hide: OpenBabel ========= + +Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. + +https://openbabel.org # Available modules @@ -17,8 +21,8 @@ To start using OpenBabel, load one of these modules using a `module load` comman module load OpenBabel/3.1.1-iimpi-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenBabel/3.1.1-iimpi-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenBabel/3.1.1-iimpi-2020a-Python-3.8.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCV.md index 5a822ed37c52..329b108b8f44 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCV.md @@ -6,6 +6,10 @@ hide: OpenCV ====== + +OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository. + +https://opencv.org/ # Available modules @@ -17,15 +21,15 @@ To start using OpenCV, load one of these modules using a `module load` command l module load OpenCV/4.6.0-foss-2022a-contrib ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenCV/4.6.0-foss-2022a-contrib|x|x|x|x|x|x|x|x| -|OpenCV/4.6.0-foss-2022a-CUDA-11.7.0-contrib|x|-|-|-|x|-|-|-| -|OpenCV/4.5.5-foss-2021b-contrib|x|x|x|-|x|x|x|x| -|OpenCV/4.5.3-foss-2021a-contrib|-|x|x|-|x|x|x|x| -|OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib|x|-|-|-|x|-|-|-| -|OpenCV/4.5.1-fosscuda-2020b-contrib|-|-|-|-|x|-|-|-| -|OpenCV/4.5.1-foss-2020b-contrib|-|x|x|-|x|x|x|x| -|OpenCV/4.2.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenCV/4.6.0-foss-2022a-contrib|x|x|x|x|x|x| +|OpenCV/4.6.0-foss-2022a-CUDA-11.7.0-contrib|x|-|x|-|x|-| +|OpenCV/4.5.5-foss-2021b-contrib|x|x|x|-|x|x| +|OpenCV/4.5.3-foss-2021a-contrib|-|x|x|-|x|x| +|OpenCV/4.5.3-foss-2021a-CUDA-11.3.1-contrib|x|-|-|-|x|-| +|OpenCV/4.5.1-fosscuda-2020b-contrib|x|-|-|-|x|-| +|OpenCV/4.5.1-foss-2020b-contrib|-|x|x|-|x|x| +|OpenCV/4.2.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCoarrays.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCoarrays.md index 245616ceafb3..aacc01210134 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCoarrays.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenCoarrays.md @@ -6,6 +6,10 @@ hide: OpenCoarrays ============ + +OpenCoarrays is an open-source software project that supportsthe coarray Fortran (CAF) parallel programming features of the Fortran 2008standard and several features proposed for Fortran 2015 in the draft TechnicalSpecification TS 18508 Additional Parallel Features in Fortran. + +https://github.com/sourceryinstitute/opencoarrays # Available modules @@ -17,8 +21,8 @@ To start using OpenCoarrays, load one of these modules using a `module load` com module load OpenCoarrays/2.8.0-gompi-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenCoarrays/2.8.0-gompi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenCoarrays/2.8.0-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenEXR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenEXR.md index 1e25999583e0..2234569a21b9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenEXR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenEXR.md @@ -6,6 +6,10 @@ hide: OpenEXR ======= + +OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications + +https://www.openexr.com/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which OpenEXR installations are available per HPC-UGent To start using OpenEXR, load one of these modules using a `module load` command like: ```shell -module load OpenEXR/3.1.5-GCCcore-12.2.0 +module load OpenEXR/3.1.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenEXR/3.1.5-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|OpenEXR/3.1.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|OpenEXR/3.1.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|OpenEXR/3.0.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|OpenEXR/2.5.5-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|OpenEXR/2.4.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenEXR/3.1.7-GCCcore-12.3.0|x|x|x|x|x|x| +|OpenEXR/3.1.5-GCCcore-12.2.0|x|x|x|x|x|x| +|OpenEXR/3.1.5-GCCcore-11.3.0|x|x|x|x|x|x| +|OpenEXR/3.1.1-GCCcore-11.2.0|x|x|x|-|x|x| +|OpenEXR/3.0.1-GCCcore-10.3.0|x|x|x|-|x|x| +|OpenEXR/2.5.5-GCCcore-10.2.0|x|x|x|x|x|x| +|OpenEXR/2.4.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM-Extend.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM-Extend.md index 78dd23c4f598..4988675cb3b8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM-Extend.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM-Extend.md @@ -6,6 +6,10 @@ hide: OpenFOAM-Extend =============== + +OpenFOAM is a free, open source CFD software package.OpenFOAM has an extensive range of features to solve anything from complex fluid flowsinvolving chemical reactions, turbulence and heat transfer,to solid dynamics and electromagnetics. + +http://www.extend-project.de/ # Available modules @@ -17,10 +21,10 @@ To start using OpenFOAM-Extend, load one of these modules using a `module load` module load OpenFOAM-Extend/4.1-20200408-foss-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenFOAM-Extend/4.1-20200408-foss-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| -|OpenFOAM-Extend/4.1-20191120-intel-2019b-Python-2.7.16|-|x|x|-|x|-|-|-| -|OpenFOAM-Extend/4.0-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenFOAM-Extend/4.1-20200408-foss-2019b-Python-2.7.16|-|x|x|-|x|x| +|OpenFOAM-Extend/4.1-20191120-intel-2019b-Python-2.7.16|-|x|x|-|x|-| +|OpenFOAM-Extend/4.0-intel-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM.md index 4aa9195912c5..e7e72025817d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFOAM.md @@ -6,6 +6,10 @@ hide: OpenFOAM ======== + +OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics. + +https://www.openfoam.org/ # Available modules @@ -17,25 +21,26 @@ To start using OpenFOAM, load one of these modules using a `module load` command module load OpenFOAM/v2206-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenFOAM/v2206-foss-2022a|x|x|x|x|x|x|x|x| -|OpenFOAM/v2112-foss-2021b|x|x|x|x|x|x|x|x| -|OpenFOAM/v2106-foss-2021a|-|x|x|x|x|x|x|x| -|OpenFOAM/v2012-foss-2020a|-|x|x|-|x|x|x|x| -|OpenFOAM/v2006-foss-2020a|-|x|x|-|x|x|x|x| -|OpenFOAM/v1912-foss-2019b|-|x|x|-|x|x|-|x| -|OpenFOAM/v1906-foss-2019b|-|x|x|-|x|x|-|x| -|OpenFOAM/10-foss-2022a|x|x|x|x|x|x|x|x| -|OpenFOAM/9-intel-2021a|-|x|x|-|x|x|x|x| -|OpenFOAM/9-foss-2021a|x|x|x|x|x|x|x|x| -|OpenFOAM/8-intel-2020b|-|x|-|-|-|-|-|-| -|OpenFOAM/8-foss-2020b|x|x|x|x|x|x|x|x| -|OpenFOAM/8-foss-2020a|-|x|x|-|x|x|x|x| -|OpenFOAM/7-foss-2019b-20200508|x|x|x|-|x|x|x|x| -|OpenFOAM/7-foss-2019b|-|x|x|-|x|x|x|x| -|OpenFOAM/6-foss-2019b|-|x|x|-|x|x|-|x| -|OpenFOAM/5.0-20180606-foss-2019b|-|x|x|-|x|x|x|x| -|OpenFOAM/2.3.1-intel-2019b|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenFOAM/v2206-foss-2022a|x|x|x|x|x|x| +|OpenFOAM/v2112-foss-2021b|x|x|x|x|x|x| +|OpenFOAM/v2106-foss-2021a|x|x|x|x|x|x| +|OpenFOAM/v2012-foss-2020a|-|x|x|-|x|x| +|OpenFOAM/v2006-foss-2020a|-|x|x|-|x|x| +|OpenFOAM/v1912-foss-2019b|-|x|x|-|x|x| +|OpenFOAM/v1906-foss-2019b|-|x|x|-|x|x| +|OpenFOAM/10-foss-2023a|x|x|x|x|x|x| +|OpenFOAM/10-foss-2022a|x|x|x|x|x|x| +|OpenFOAM/9-intel-2021a|-|x|x|-|x|x| +|OpenFOAM/9-foss-2021a|x|x|x|x|x|x| +|OpenFOAM/8-intel-2020b|-|x|-|-|-|-| +|OpenFOAM/8-foss-2020b|x|x|x|x|x|x| +|OpenFOAM/8-foss-2020a|-|x|x|-|x|x| +|OpenFOAM/7-foss-2019b-20200508|x|x|x|-|x|x| +|OpenFOAM/7-foss-2019b|-|x|x|-|x|x| +|OpenFOAM/6-foss-2019b|-|x|x|-|x|x| +|OpenFOAM/5.0-20180606-foss-2019b|-|x|x|-|x|x| +|OpenFOAM/2.3.1-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFace.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFace.md index fb400a344ed5..77c9b4f3b0f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFace.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFace.md @@ -6,6 +6,10 @@ hide: OpenFace ======== + +OpenFace – a state-of-the art tool intended for facial landmarkdetection, head pose estimation, facial action unit recognition, and eye-gazeestimation. + +https://github.com/TadasBaltrusaitis/OpenFace # Available modules @@ -17,9 +21,9 @@ To start using OpenFace, load one of these modules using a `module load` command module load OpenFace/2.2.0-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenFace/2.2.0-foss-2021a-CUDA-11.3.1|-|-|-|-|x|-|-|-| -|OpenFace/2.2.0-foss-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenFace/2.2.0-foss-2021a-CUDA-11.3.1|-|-|-|-|x|-| +|OpenFace/2.2.0-foss-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFold.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFold.md index b12a15b65b78..2d3a0032a7b5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFold.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenFold.md @@ -6,6 +6,10 @@ hide: OpenFold ======== + +A faithful PyTorch reproduction of DeepMind's AlphaFold 2 + +https://github.com/aqlaboratory/openfold # Available modules @@ -14,12 +18,32 @@ The overview below shows which OpenFold installations are available per HPC-UGen To start using OpenFold, load one of these modules using a `module load` command like: ```shell -module load OpenFold/1.0.1-foss-2021a-CUDA-11.3.1 +module load OpenFold/1.0.1-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenFold/1.0.1-foss-2022a-CUDA-11.7.0|-|-|x|-|-|-| +|OpenFold/1.0.1-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|OpenFold/1.0.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### OpenFold/1.0.1-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +contextlib2-21.6.0, deepspeed-0.5.10, dllogger-1.0.0, flash_attn-0.2.8, hjson-3.0.2, ml_collections-0.1.0, ninja-1.10.2.3, OpenFold-1.0.1, PDBFixer-1.8.1, py-cpuinfo-8.0.0 + +### OpenFold/1.0.1-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +contextlib2-21.6.0, deepspeed-0.5.9, dllogger-1.0.0, flash_attn-0.2.8, hjson-3.0.2, ml_collections-0.1.0, ninja-1.10.2.3, OpenFold-1.0.1, PDBFixer-1.7, py-cpuinfo-8.0.0, triton-1.0.0 + +### OpenFold/1.0.0-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenFold/1.0.1-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|OpenFold/1.0.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| +contextlib2-21.6.0, deepspeed-0.5.9, dllogger-1.0.0, hjson-3.0.2, ml_collections-0.1.0, ninja-1.10.2.3, OpenFold-1.0.0, PDBFixer-1.7, py-cpuinfo-8.0.0, triton-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenForceField.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenForceField.md index ac05203deb2b..1db50bfa5a9d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenForceField.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenForceField.md @@ -6,6 +6,10 @@ hide: OpenForceField ============== + +Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications. + +https://github.com/openforcefield/openforcefield/releases # Available modules @@ -17,8 +21,15 @@ To start using OpenForceField, load one of these modules using a `module load` c module load OpenForceField/0.7.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenForceField/0.7.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### OpenForceField/0.7.0-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenForceField/0.7.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +bson-0.5.10, msgpack-python-0.5.6, OpenForceField-0.7.0, xmltodict-0.12.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenImageIO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenImageIO.md index 00e8533bbb0b..7c1689bc3a4c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenImageIO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenImageIO.md @@ -6,6 +6,10 @@ hide: OpenImageIO =========== + +OpenImageIO is a library for reading and writing images, and a bunch of related classes, utilities, and applications. + +https://openimageio.org/ # Available modules @@ -17,9 +21,9 @@ To start using OpenImageIO, load one of these modules using a `module load` comm module load OpenImageIO/2.0.12-iimpi-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenImageIO/2.0.12-iimpi-2019b|-|x|x|-|x|x|-|x| -|OpenImageIO/2.0.12-gompi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenImageIO/2.0.12-iimpi-2019b|-|x|x|-|x|x| +|OpenImageIO/2.0.12-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenJPEG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenJPEG.md index 04b87a9064b1..865c0352e35a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenJPEG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenJPEG.md @@ -6,6 +6,10 @@ hide: OpenJPEG ======== + +OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software. + +https://www.openjpeg.org/ # Available modules @@ -14,14 +18,15 @@ The overview below shows which OpenJPEG installations are available per HPC-UGen To start using OpenJPEG, load one of these modules using a `module load` command like: ```shell -module load OpenJPEG/2.5.0-GCCcore-12.2.0 +module load OpenJPEG/2.5.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenJPEG/2.5.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|OpenJPEG/2.5.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|OpenJPEG/2.4.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|OpenJPEG/2.4.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenJPEG/2.5.0-GCCcore-12.3.0|x|x|x|x|x|x| +|OpenJPEG/2.5.0-GCCcore-12.2.0|x|x|x|x|x|x| +|OpenJPEG/2.5.0-GCCcore-11.3.0|x|x|x|x|x|x| +|OpenJPEG/2.4.0-GCCcore-11.2.0|x|x|x|x|x|x| +|OpenJPEG/2.4.0-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM-PLUMED.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM-PLUMED.md index f7691cb52d43..518a2a9989b8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM-PLUMED.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM-PLUMED.md @@ -6,6 +6,10 @@ hide: OpenMM-PLUMED ============= + +This project provides a connection between OpenMM andPLUMED. It allows you to bias or analyze an OpenMM simulation based oncollective variables. + +https://github.com/openmm/openmm-plumed/ # Available modules @@ -17,8 +21,8 @@ To start using OpenMM-PLUMED, load one of these modules using a `module load` co module load OpenMM-PLUMED/1.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenMM-PLUMED/1.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenMM-PLUMED/1.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM.md index a836bb579b56..a861ef503ec7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMM.md @@ -6,6 +6,10 @@ hide: OpenMM ====== + +OpenMM is a toolkit for molecular simulation. + +https://openmm.org # Available modules @@ -17,24 +21,25 @@ To start using OpenMM, load one of these modules using a `module load` command l module load OpenMM/8.0.0-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenMM/8.0.0-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|OpenMM/8.0.0-foss-2022a|x|x|x|x|x|x|x|x| -|OpenMM/7.7.0-foss-2022a|x|x|x|x|x|x|x|x| -|OpenMM/7.7.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|OpenMM/7.7.0-foss-2021a|x|x|x|-|x|x|x|x| -|OpenMM/7.5.1-fosscuda-2020b|x|-|-|-|x|-|-|-| -|OpenMM/7.5.1-foss-2021b-DeepMind-patch|x|-|x|-|x|-|-|-| -|OpenMM/7.5.1-foss-2021b-CUDA-11.4.1-DeepMind-patch|x|-|-|-|x|-|-|-| -|OpenMM/7.5.1-foss-2021a-DeepMind-patch|x|-|x|-|x|-|-|-| -|OpenMM/7.5.1-foss-2021a-CUDA-11.3.1-DeepMind-patch|x|-|-|-|x|-|-|-| -|OpenMM/7.5.0-intel-2020b|-|x|x|-|x|x|x|x| -|OpenMM/7.5.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|OpenMM/7.5.0-fosscuda-2020b|x|-|-|-|x|-|-|-| -|OpenMM/7.5.0-foss-2020b|x|x|x|x|x|x|x|x| -|OpenMM/7.4.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|OpenMM/7.4.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|OpenMM/7.4.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenMM/8.0.0-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|OpenMM/8.0.0-foss-2022a|x|x|x|x|x|x| +|OpenMM/7.7.0-foss-2022a-CUDA-11.7.0|-|-|x|-|-|-| +|OpenMM/7.7.0-foss-2022a|x|x|x|x|x|x| +|OpenMM/7.7.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|OpenMM/7.7.0-foss-2021a|x|x|x|-|x|x| +|OpenMM/7.5.1-fosscuda-2020b|x|-|-|-|x|-| +|OpenMM/7.5.1-foss-2021b-DeepMind-patch|x|-|x|-|x|-| +|OpenMM/7.5.1-foss-2021b-CUDA-11.4.1-DeepMind-patch|x|-|-|-|x|-| +|OpenMM/7.5.1-foss-2021a-DeepMind-patch|x|-|x|-|x|-| +|OpenMM/7.5.1-foss-2021a-CUDA-11.3.1-DeepMind-patch|x|-|-|-|x|-| +|OpenMM/7.5.0-intel-2020b|-|x|x|-|x|x| +|OpenMM/7.5.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|OpenMM/7.5.0-fosscuda-2020b|x|-|-|-|x|-| +|OpenMM/7.5.0-foss-2020b|x|x|x|x|x|x| +|OpenMM/7.4.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|OpenMM/7.4.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|OpenMM/7.4.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMMTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMMTools.md index fdc2a5c8c95a..0b4dda5a8c02 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMMTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMMTools.md @@ -6,6 +6,10 @@ hide: OpenMMTools =========== + +A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.openmmtools is a Python library layer that sits on top of OpenMM to provide access to a variety of useful tools for building full-featured molecular simulation packages. + +https://github.com/choderalab/openmmtools # Available modules @@ -17,8 +21,15 @@ To start using OpenMMTools, load one of these modules using a `module load` comm module load OpenMMTools/0.20.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenMMTools/0.20.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### OpenMMTools/0.20.0-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenMMTools/0.20.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +hypothesis-5.20.0, ipython_genutils-0.2.0, jsonschema-3.2.0, jupyter_core-4.6.3, mpiplus-0.0.1, nbformat-5.0.7, OpenMMTools-0.20.0, pyrsistent-0.16.0, sortedcontainers-2.2.2, traitlets-4.3.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMPI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMPI.md index 1e800c9ba1cb..e6d6d9ee5da4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMPI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMPI.md @@ -6,6 +6,10 @@ hide: OpenMPI ======= + +The Open MPI Project is an open source MPI-3 implementation. + +https://www.open-mpi.org/ # Available modules @@ -14,24 +18,25 @@ The overview below shows which OpenMPI installations are available per HPC-UGent To start using OpenMPI, load one of these modules using a `module load` command like: ```shell -module load OpenMPI/4.1.5-GCC-12.3.0 +module load OpenMPI/4.1.6-GCC-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenMPI/4.1.5-GCC-12.3.0|x|x|x|x|x|x|x|x| -|OpenMPI/4.1.4-GCC-12.2.0|x|x|x|x|x|x|x|x| -|OpenMPI/4.1.4-GCC-11.3.0|x|x|x|x|x|x|x|x| -|OpenMPI/4.1.1-intel-compilers-2021.2.0|-|-|x|-|x|x|x|x| -|OpenMPI/4.1.1-GCC-11.2.0|x|x|x|x|x|x|x|x| -|OpenMPI/4.1.1-GCC-10.3.0|x|x|x|x|x|x|x|x| -|OpenMPI/4.0.5-iccifort-2020.4.304|x|x|x|x|x|x|x|x| -|OpenMPI/4.0.5-gcccuda-2020b|x|x|x|x|x|x|x|x| -|OpenMPI/4.0.5-NVHPC-21.2-CUDA-11.2.1|x|-|x|-|x|-|-|-| -|OpenMPI/4.0.5-GCC-10.2.0|x|x|x|x|x|x|x|x| -|OpenMPI/4.0.3-iccifort-2020.1.217|-|x|-|-|-|-|-|-| -|OpenMPI/4.0.3-GCC-9.3.0|-|x|x|x|x|x|x|x| -|OpenMPI/3.1.4-GCC-8.3.0-ucx|-|x|-|-|-|-|x|-| -|OpenMPI/3.1.4-GCC-8.3.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenMPI/4.1.6-GCC-13.2.0|x|x|x|x|x|x| +|OpenMPI/4.1.5-GCC-12.3.0|x|x|x|x|x|x| +|OpenMPI/4.1.4-GCC-12.2.0|x|x|x|x|x|x| +|OpenMPI/4.1.4-GCC-11.3.0|x|x|x|x|x|x| +|OpenMPI/4.1.1-intel-compilers-2021.2.0|x|x|x|x|x|x| +|OpenMPI/4.1.1-GCC-11.2.0|x|x|x|x|x|x| +|OpenMPI/4.1.1-GCC-10.3.0|x|x|x|x|x|x| +|OpenMPI/4.0.5-iccifort-2020.4.304|x|x|x|x|x|x| +|OpenMPI/4.0.5-gcccuda-2020b|x|x|x|x|x|x| +|OpenMPI/4.0.5-NVHPC-21.2-CUDA-11.2.1|x|-|x|-|x|-| +|OpenMPI/4.0.5-GCC-10.2.0|x|x|x|x|x|x| +|OpenMPI/4.0.3-iccifort-2020.1.217|-|x|-|-|-|-| +|OpenMPI/4.0.3-GCC-9.3.0|-|x|x|x|x|x| +|OpenMPI/3.1.4-GCC-8.3.0-ucx|-|x|-|-|-|-| +|OpenMPI/3.1.4-GCC-8.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMolcas.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMolcas.md index bf06005dd676..aca7483fcb6d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMolcas.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenMolcas.md @@ -6,6 +6,10 @@ hide: OpenMolcas ========== + +OpenMolcas is a quantum chemistry software package + +https://gitlab.com/Molcas/OpenMolcas # Available modules @@ -14,11 +18,12 @@ The overview below shows which OpenMolcas installations are available per HPC-UG To start using OpenMolcas, load one of these modules using a `module load` command like: ```shell -module load OpenMolcas/21.06-intel-2021a +module load OpenMolcas/21.06-iomkl-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenMolcas/21.06-intel-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenMolcas/21.06-iomkl-2021a|x|x|x|x|x|x| +|OpenMolcas/21.06-intel-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPGM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPGM.md index 9908216a6a23..53b8c5f26b0d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPGM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPGM.md @@ -6,6 +6,10 @@ hide: OpenPGM ======= + +OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility. + +https://code.google.com/p/openpgm/ # Available modules @@ -14,16 +18,18 @@ The overview below shows which OpenPGM installations are available per HPC-UGent To start using OpenPGM, load one of these modules using a `module load` command like: ```shell -module load OpenPGM/5.2.122-GCCcore-11.3.0 +module load OpenPGM/5.2.122-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenPGM/5.2.122-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|OpenPGM/5.2.122-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|OpenPGM/5.2.122-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|OpenPGM/5.2.122-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|OpenPGM/5.2.122-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|OpenPGM/5.2.122-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenPGM/5.2.122-GCCcore-12.3.0|x|x|x|x|x|x| +|OpenPGM/5.2.122-GCCcore-12.2.0|x|x|x|x|x|x| +|OpenPGM/5.2.122-GCCcore-11.3.0|x|x|x|x|x|x| +|OpenPGM/5.2.122-GCCcore-11.2.0|x|x|x|x|x|x| +|OpenPGM/5.2.122-GCCcore-10.3.0|x|x|x|x|x|x| +|OpenPGM/5.2.122-GCCcore-10.2.0|x|x|x|x|x|x| +|OpenPGM/5.2.122-GCCcore-9.3.0|x|x|x|x|x|x| +|OpenPGM/5.2.122-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPIV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPIV.md index 3ca1a4a1267b..c3cf69c35185 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPIV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenPIV.md @@ -6,6 +6,10 @@ hide: OpenPIV ======= + +OpenPIV is an open source Particle Image Velocimetry analysis software + +http://www.openpiv.net # Available modules @@ -17,8 +21,15 @@ To start using OpenPIV, load one of these modules using a `module load` command module load OpenPIV/0.21.8-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenPIV/0.21.8-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### OpenPIV/0.21.8-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenPIV/0.21.8-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +OpenPIV-0.21.8, progressbar2-3.51.4, python-utils-2.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSSL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSSL.md index c17bc7936ffc..e15982234f4a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSSL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSSL.md @@ -6,6 +6,10 @@ hide: OpenSSL ======= + +The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library. + +https://www.openssl.org/ # Available modules @@ -17,8 +21,8 @@ To start using OpenSSL, load one of these modules using a `module load` command module load OpenSSL/1.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenSSL/1.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenSSL/1.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSees.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSees.md index b9ad76d1055e..5c3de2eb1e3d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSees.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSees.md @@ -6,6 +6,10 @@ hide: OpenSees ======== + +Open System for Earthquake Engineering Simulation + +https://opensees.berkeley.edu/index.php # Available modules @@ -17,9 +21,9 @@ To start using OpenSees, load one of these modules using a `module load` command module load OpenSees/3.2.0-intel-2020a-Python-3.8.2-parallel ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenSees/3.2.0-intel-2020a-Python-3.8.2-parallel|-|x|x|-|x|x|x|x| -|OpenSees/3.2.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenSees/3.2.0-intel-2020a-Python-3.8.2-parallel|-|x|x|-|x|x| +|OpenSees/3.2.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide-Java.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide-Java.md new file mode 100644 index 000000000000..91f69e816817 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide-Java.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +OpenSlide-Java +============== + + +This is a Java binding to OpenSlide. + +https://github.com/openslide/openslide-java +# Available modules + + +The overview below shows which OpenSlide-Java installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using OpenSlide-Java, load one of these modules using a `module load` command like: + +```shell +module load OpenSlide-Java/0.12.4-GCCcore-12.3.0-Java-17 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenSlide-Java/0.12.4-GCCcore-12.3.0-Java-17|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide.md index 3cb9ccd4abe4..284c33765f77 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OpenSlide.md @@ -6,6 +6,10 @@ hide: OpenSlide ========= + +OpenSlide is a C library that provides a simple interface toread whole-slide images (also known as virtual slides). + +https://openslide.org/ # Available modules @@ -14,12 +18,14 @@ The overview below shows which OpenSlide installations are available per HPC-UGe To start using OpenSlide, load one of these modules using a `module load` command like: ```shell -module load OpenSlide/3.4.1-GCCcore-11.2.0 +module load OpenSlide/3.4.1-GCCcore-12.3.0-largefiles ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OpenSlide/3.4.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|OpenSlide/3.4.1-GCCcore-10.3.0-largefiles|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OpenSlide/3.4.1-GCCcore-12.3.0-largefiles|x|x|x|x|x|x| +|OpenSlide/3.4.1-GCCcore-11.3.0-largefiles|x|-|x|-|x|-| +|OpenSlide/3.4.1-GCCcore-11.2.0|x|x|x|-|x|x| +|OpenSlide/3.4.1-GCCcore-10.3.0-largefiles|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Optuna.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Optuna.md index 06220108bc17..a980a98f0e83 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Optuna.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Optuna.md @@ -6,6 +6,10 @@ hide: Optuna ====== + +Optuna is an automatic hyperparameter optimization software framework,particularly designed for machine learning. It features an imperative,define-by-run style user API. Thanks to our define-by-run API, the code writtenwith Optuna enjoys high modularity, and the user of Optuna can dynamicallyconstruct the search spaces for the hyperparameters. + +https://optuna.org/ # Available modules @@ -17,8 +21,15 @@ To start using Optuna, load one of these modules using a `module load` command l module load Optuna/3.1.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Optuna/3.1.0-foss-2022a|x|x|x|x|x|x| + + +### Optuna/3.1.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Optuna/3.1.0-foss-2022a|x|x|x|x|x|x|x|x| +%(namelower)s-3.1.0, alembic-1.9.3, cmaes-0.9.1, colorlog-6.7.0, SQLAlchemy-2.0.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/OrthoFinder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/OrthoFinder.md index 59c6f1add93b..07d29cea0df2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/OrthoFinder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/OrthoFinder.md @@ -6,6 +6,10 @@ hide: OrthoFinder =========== + +OrthoFinder is a fast, accurate and comprehensive platform for comparative genomics + +https://github.com/davidemms/OrthoFinder # Available modules @@ -14,14 +18,15 @@ The overview below shows which OrthoFinder installations are available per HPC-U To start using OrthoFinder, load one of these modules using a `module load` command like: ```shell -module load OrthoFinder/2.5.4-foss-2020b +module load OrthoFinder/2.5.5-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|OrthoFinder/2.5.4-foss-2020b|-|x|x|x|x|x|x|x| -|OrthoFinder/2.5.2-foss-2020b|-|x|x|x|x|x|x|x| -|OrthoFinder/2.3.11-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|OrthoFinder/2.3.8-foss-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|OrthoFinder/2.5.5-foss-2023a|x|x|x|x|x|x| +|OrthoFinder/2.5.4-foss-2020b|-|x|x|x|x|x| +|OrthoFinder/2.5.2-foss-2020b|-|x|x|x|x|x| +|OrthoFinder/2.3.11-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|OrthoFinder/2.3.8-foss-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Osi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Osi.md index d44ff42d72db..da0aa2d8b47d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Osi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Osi.md @@ -6,6 +6,10 @@ hide: Osi === + +Osi (Open Solver Interface) provides an abstract base class to a generic linearprogramming (LP) solver, along with derived classes for specific solvers. Manyapplications may be able to use the Osi to insulate themselves from a specificLP solver. That is, programs written to the OSI standard may be linked to anysolver with an OSI interface and should produce correct results. The OSI hasbeen significantly extended compared to its first incarnation. Currently, theOSI supports linear programming solvers and has rudimentary support for integerprogramming. + +https://github.com/coin-or/Osi # Available modules @@ -14,11 +18,13 @@ The overview below shows which Osi installations are available per HPC-UGent Tie To start using Osi, load one of these modules using a `module load` command like: ```shell -module load Osi/0.108.7-GCC-11.2.0 +module load Osi/0.108.9-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Osi/0.108.7-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Osi/0.108.9-GCC-12.3.0|x|x|x|x|x|x| +|Osi/0.108.8-GCC-12.2.0|x|x|x|x|x|x| +|Osi/0.108.7-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PASA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PASA.md new file mode 100644 index 000000000000..3aab9ca051dd --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PASA.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +PASA +==== + + +PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments. + +https://github.com/PASApipeline/PASApipeline +# Available modules + + +The overview below shows which PASA installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PASA, load one of these modules using a `module load` command like: + +```shell +module load PASA/2.5.3-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PASA/2.5.3-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PBGZIP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PBGZIP.md index dc4cda220fa8..eb99beace5af 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PBGZIP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PBGZIP.md @@ -6,6 +6,10 @@ hide: PBGZIP ====== + +Parallel Block GZIP + +https://github.com/nh13/pbgzip # Available modules @@ -17,8 +21,8 @@ To start using PBGZIP, load one of these modules using a `module load` command l module load PBGZIP/20160804-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PBGZIP/20160804-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PBGZIP/20160804-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE.md index f8271866f0f2..2a1f0c7da2f1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE.md @@ -6,6 +6,10 @@ hide: PCRE ==== + +The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. + +https://www.pcre.org/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which PCRE installations are available per HPC-UGent Ti To start using PCRE, load one of these modules using a `module load` command like: ```shell -module load PCRE/8.45-GCCcore-12.2.0 +module load PCRE/8.45-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PCRE/8.45-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|PCRE/8.45-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|PCRE/8.45-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|PCRE/8.44-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|PCRE/8.44-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|PCRE/8.44-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|PCRE/8.43-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PCRE/8.45-GCCcore-12.3.0|x|x|x|x|x|x| +|PCRE/8.45-GCCcore-12.2.0|x|x|x|x|x|x| +|PCRE/8.45-GCCcore-11.3.0|x|x|x|x|x|x| +|PCRE/8.45-GCCcore-11.2.0|x|x|x|x|x|x| +|PCRE/8.44-GCCcore-10.3.0|x|x|x|x|x|x| +|PCRE/8.44-GCCcore-10.2.0|x|x|x|x|x|x| +|PCRE/8.44-GCCcore-9.3.0|x|x|x|x|x|x| +|PCRE/8.43-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE2.md index 804e0ad5dd3c..2b1e21e0b2dc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PCRE2.md @@ -6,6 +6,10 @@ hide: PCRE2 ===== + +The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5. + +http://www.pcre.org/ # Available modules @@ -14,19 +18,20 @@ The overview below shows which PCRE2 installations are available per HPC-UGent T To start using PCRE2, load one of these modules using a `module load` command like: ```shell -module load PCRE2/10.40-GCCcore-12.2.0 +module load PCRE2/10.42-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PCRE2/10.40-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|PCRE2/10.40-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|PCRE2/10.37-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|PCRE2/10.36-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|PCRE2/10.36|-|x|x|-|x|-|x|-| -|PCRE2/10.35-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|PCRE2/10.34-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|PCRE2/10.33-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|PCRE2/10.32|-|-|x|-|x|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PCRE2/10.42-GCCcore-12.3.0|x|x|x|x|x|x| +|PCRE2/10.40-GCCcore-12.2.0|x|x|x|x|x|x| +|PCRE2/10.40-GCCcore-11.3.0|x|x|x|x|x|x| +|PCRE2/10.37-GCCcore-11.2.0|x|x|x|x|x|x| +|PCRE2/10.36-GCCcore-10.3.0|x|x|x|x|x|x| +|PCRE2/10.36|-|x|x|-|x|-| +|PCRE2/10.35-GCCcore-10.2.0|x|x|x|x|x|x| +|PCRE2/10.34-GCCcore-9.3.0|-|x|x|-|x|x| +|PCRE2/10.33-GCCcore-8.3.0|x|x|x|-|x|x| +|PCRE2/10.32|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PEAR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PEAR.md index 739eabeeff13..7ff2e2a373fe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PEAR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PEAR.md @@ -6,6 +6,10 @@ hide: PEAR ==== + +PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. + +https://cme.h-its.org/exelixis/web/software/pear/ # Available modules @@ -17,9 +21,9 @@ To start using PEAR, load one of these modules using a `module load` command lik module load PEAR/0.9.11-GCCcore-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PEAR/0.9.11-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|PEAR/0.9.11-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PEAR/0.9.11-GCCcore-9.3.0|-|x|x|-|x|x| +|PEAR/0.9.11-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PETSc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PETSc.md index 610de197a27d..44316ff04301 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PETSc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PETSc.md @@ -6,6 +6,10 @@ hide: PETSc ===== + +PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. + +https://www.mcs.anl.gov/petsc # Available modules @@ -17,15 +21,15 @@ To start using PETSc, load one of these modules using a `module load` command li module load PETSc/3.18.4-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PETSc/3.18.4-intel-2021b|x|x|x|x|x|x|x|x| -|PETSc/3.17.4-foss-2022a|x|x|x|-|x|x|x|x| -|PETSc/3.15.1-foss-2021a|-|x|x|-|x|x|x|x| -|PETSc/3.14.4-foss-2020b|-|x|x|x|x|x|x|x| -|PETSc/3.12.4-intel-2019b-Python-3.7.4|-|-|x|-|x|-|-|-| -|PETSc/3.12.4-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| -|PETSc/3.12.4-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|PETSc/3.12.4-foss-2019b-Python-3.7.4|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PETSc/3.18.4-intel-2021b|x|x|x|x|x|x| +|PETSc/3.17.4-foss-2022a|x|x|x|x|x|x| +|PETSc/3.15.1-foss-2021a|-|x|x|-|x|x| +|PETSc/3.14.4-foss-2020b|-|x|x|x|x|x| +|PETSc/3.12.4-intel-2019b-Python-3.7.4|-|-|x|-|x|-| +|PETSc/3.12.4-intel-2019b-Python-2.7.16|-|x|x|-|x|x| +|PETSc/3.12.4-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|PETSc/3.12.4-foss-2019b-Python-3.7.4|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PHYLIP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PHYLIP.md new file mode 100644 index 000000000000..98eac2a128a3 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PHYLIP.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +PHYLIP +====== + + +PHYLIP is a free package of programs for inferring phylogenies. + +https://evolution.genetics.washington.edu/phylip +# Available modules + + +The overview below shows which PHYLIP installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PHYLIP, load one of these modules using a `module load` command like: + +```shell +module load PHYLIP/3.697-GCC-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PHYLIP/3.697-GCC-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PICRUSt2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PICRUSt2.md index 0778522b2a08..5365a458442d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PICRUSt2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PICRUSt2.md @@ -6,6 +6,10 @@ hide: PICRUSt2 ======== + +PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a software for predicting functional abundances based only on marker gene sequences. + +https://github.com/picrust/picrust2 # Available modules @@ -17,8 +21,15 @@ To start using PICRUSt2, load one of these modules using a `module load` command module load PICRUSt2/2.5.2-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PICRUSt2/2.5.2-foss-2022b|x|x|x|x|x|x| + + +### PICRUSt2/2.5.2-foss-2022b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PICRUSt2/2.5.2-foss-2022b|x|x|x|x|x|x|x|x| +joblib-1.3.1, PICRUSt2-2.5.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PLAMS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PLAMS.md index 9464f7322bc9..9702a3210747 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PLAMS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PLAMS.md @@ -6,6 +6,10 @@ hide: PLAMS ===== + +The Python Library for Automating Molecular Simulation (PLAMS) is powerful and flexible Python toolinterfaced to the Amsterdam Modeling Suite engines ADF, BAND, DFTB, MOPAC, ReaxFF, and UFF. + +https://www.scm.com/product/plams # Available modules @@ -17,8 +21,8 @@ To start using PLAMS, load one of these modules using a `module load` command li module load PLAMS/1.5.1-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PLAMS/1.5.1-intel-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PLAMS/1.5.1-intel-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PLINK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PLINK.md index 1e1ebc1b0a29..1c9a2f5940df 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PLINK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PLINK.md @@ -6,6 +6,10 @@ hide: PLINK ===== + +Whole-genome association analysis toolset + +https://www.cog-genomics.org/plink/2.0/ # Available modules @@ -17,8 +21,8 @@ To start using PLINK, load one of these modules using a `module load` command li module load PLINK/2.00a3.1-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PLINK/2.00a3.1-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PLINK/2.00a3.1-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md index ca06db791eae..3441cd31bfbb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PLUMED.md @@ -6,6 +6,10 @@ hide: PLUMED ====== + +PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. + +https://www.plumed.org # Available modules @@ -14,22 +18,23 @@ The overview below shows which PLUMED installations are available per HPC-UGent To start using PLUMED, load one of these modules using a `module load` command like: ```shell -module load PLUMED/2.9.0-foss-2022b +module load PLUMED/2.9.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PLUMED/2.9.0-foss-2022b|x|x|x|x|x|x|x|x| -|PLUMED/2.8.1-foss-2022a|x|x|x|x|x|x|x|x| -|PLUMED/2.7.3-foss-2021b|x|x|x|-|x|x|x|x| -|PLUMED/2.7.2-foss-2021a|x|x|x|x|x|x|x|x| -|PLUMED/2.6.2-intelcuda-2020b|-|-|-|-|x|-|-|-| -|PLUMED/2.6.2-intel-2020b|-|x|x|-|x|-|-|-| -|PLUMED/2.6.2-foss-2020b|-|x|x|x|x|x|x|x| -|PLUMED/2.6.0-iomkl-2020a-Python-3.8.2|-|x|-|-|-|-|-|-| -|PLUMED/2.6.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|PLUMED/2.6.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|PLUMED/2.5.3-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|PLUMED/2.5.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PLUMED/2.9.0-foss-2023a|x|x|x|x|x|x| +|PLUMED/2.9.0-foss-2022b|x|x|x|x|x|x| +|PLUMED/2.8.1-foss-2022a|x|x|x|x|x|x| +|PLUMED/2.7.3-foss-2021b|x|x|x|-|x|x| +|PLUMED/2.7.2-foss-2021a|x|x|x|x|x|x| +|PLUMED/2.6.2-intelcuda-2020b|-|-|-|-|x|-| +|PLUMED/2.6.2-intel-2020b|-|x|x|-|x|-| +|PLUMED/2.6.2-foss-2020b|-|x|x|x|x|x| +|PLUMED/2.6.0-iomkl-2020a-Python-3.8.2|-|x|-|-|-|-| +|PLUMED/2.6.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|PLUMED/2.6.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|PLUMED/2.5.3-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|PLUMED/2.5.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PLY.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PLY.md index cbb2c37be6f9..bc4852215864 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PLY.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PLY.md @@ -6,6 +6,10 @@ hide: PLY === + +PLY is yet another implementation of lex and yacc for Python. + +https://www.dabeaz.com/ply/ # Available modules @@ -17,8 +21,8 @@ To start using PLY, load one of these modules using a `module load` command like module load PLY/3.11-GCCcore-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PLY/3.11-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PLY/3.11-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PMIx.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PMIx.md index 770967c67f87..32620df01361 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PMIx.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PMIx.md @@ -6,6 +6,10 @@ hide: PMIx ==== + +Process Management for Exascale EnvironmentsPMI Exascale (PMIx) represents an attempt toprovide an extended version of the PMI standard specifically designedto support clusters up to and including exascale sizes. The overallobjective of the project is not to branch the existing pseudo-standarddefinitions - in fact, PMIx fully supports both of the existing PMI-1and PMI-2 APIs - but rather to (a) augment and extend those APIs toeliminate some current restrictions that impact scalability, and (b)provide a reference implementation of the PMI-server that demonstratesthe desired level of scalability. + +https://pmix.org/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which PMIx installations are available per HPC-UGent Ti To start using PMIx, load one of these modules using a `module load` command like: ```shell -module load PMIx/4.2.4-GCCcore-12.3.0 +module load PMIx/4.2.6-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PMIx/4.2.4-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|PMIx/4.2.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|PMIx/4.1.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|PMIx/4.1.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|PMIx/3.2.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|PMIx/3.1.5-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|PMIx/3.1.5-GCCcore-9.3.0|-|x|x|x|x|x|x|x| -|PMIx/3.1.4-GCCcore-8.3.0|-|-|-|-|-|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PMIx/4.2.6-GCCcore-13.2.0|x|x|x|x|x|x| +|PMIx/4.2.4-GCCcore-12.3.0|x|x|x|x|x|x| +|PMIx/4.2.2-GCCcore-12.2.0|x|x|x|x|x|x| +|PMIx/4.1.2-GCCcore-11.3.0|x|x|x|x|x|x| +|PMIx/4.1.0-GCCcore-11.2.0|x|x|x|x|x|x| +|PMIx/3.2.3-GCCcore-10.3.0|x|x|x|x|x|x| +|PMIx/3.1.5-GCCcore-10.2.0|x|x|x|x|x|x| +|PMIx/3.1.5-GCCcore-9.3.0|x|x|x|x|x|x| +|PMIx/3.1.4-GCCcore-8.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/POT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/POT.md index 72c5077096cb..d3e5ff2b3d3e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/POT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/POT.md @@ -6,6 +6,10 @@ hide: POT === + +POT (Python Optimal Transport) is a Python library provide several solvers for optimization problems related to Optimal Transport for signal, image processing and machine learning. + +https://github.com/rflamary/POT # Available modules @@ -17,8 +21,15 @@ To start using POT, load one of these modules using a `module load` command like module load POT/0.9.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|POT/0.9.0-foss-2022a|x|x|x|x|x|x| + + +### POT/0.9.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|POT/0.9.0-foss-2022a|x|x|x|x|x|x|x|x| +autograd-1.6.2, POT-0.9.0, pymanopt-2.1.1, versioneer-0.28 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/POV-Ray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/POV-Ray.md index 61baba4f3b99..357d8a11e920 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/POV-Ray.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/POV-Ray.md @@ -6,6 +6,10 @@ hide: POV-Ray ======= + +The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports. + +https://www.povray.org/ # Available modules @@ -17,8 +21,8 @@ To start using POV-Ray, load one of these modules using a `module load` command module load POV-Ray/3.7.0.8-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|POV-Ray/3.7.0.8-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|POV-Ray/3.7.0.8-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PPanGGOLiN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PPanGGOLiN.md index fbcbe93822ac..c8a840216e4d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PPanGGOLiN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PPanGGOLiN.md @@ -6,6 +6,10 @@ hide: PPanGGOLiN ========== + +PPanGGOLiN is a software suite used to create and manipulate prokaryoticpangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designedto scale up to tens of thousands of genomes. It has the specificity to partition the pangenome usinga statistical approach rather than using fixed thresholds which gives it the ability to work with low-qualitydata such as Metagenomic Assembled Genomes (MAGs) or Single-cell Amplified Genomes (SAGs) thus taking advantageof large scale environmental studies and letting users study the pangenome of uncultivable species. + +https://github.com/labgem/PPanGGOLiN # Available modules @@ -17,8 +21,15 @@ To start using PPanGGOLiN, load one of these modules using a `module load` comma module load PPanGGOLiN/1.1.136-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PPanGGOLiN/1.1.136-foss-2021b|x|x|x|-|x|x| + + +### PPanGGOLiN/1.1.136-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PPanGGOLiN/1.1.136-foss-2021b|x|x|x|-|x|x|x|x| +colorlover-0.3.0, PPanGGOLiN-1.1.136 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PRANK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PRANK.md index 963ec03ece7e..f89682e417d8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PRANK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PRANK.md @@ -6,6 +6,10 @@ hide: PRANK ===== + +PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. PRANK is based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. + +http://wasabiapp.org/software/prank/ # Available modules @@ -17,9 +21,9 @@ To start using PRANK, load one of these modules using a `module load` command li module load PRANK/170427-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PRANK/170427-GCC-10.2.0|-|x|x|x|x|x|x|x| -|PRANK/170427-GCC-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PRANK/170427-GCC-10.2.0|-|x|x|x|x|x| +|PRANK/170427-GCC-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PRINSEQ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PRINSEQ.md index be8927478e33..2f1da58c5989 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PRINSEQ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PRINSEQ.md @@ -6,6 +6,10 @@ hide: PRINSEQ ======= + +A bioinformatics tool to PRe-process and show INformation of SEQuence data. + +http://prinseq.sourceforge.net # Available modules @@ -17,9 +21,22 @@ To start using PRINSEQ, load one of these modules using a `module load` command module load PRINSEQ/0.20.4-foss-2021b-Perl-5.34.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PRINSEQ/0.20.4-foss-2021b-Perl-5.34.0|x|x|x|-|x|x| +|PRINSEQ/0.20.4-foss-2020b-Perl-5.32.0|-|x|x|x|x|-| + + +### PRINSEQ/0.20.4-foss-2021b-Perl-5.34.0 + +This is a list of extensions included in the module: + +Cairo-1.109, Contextual::Return-0.2.1, ExtUtils::Depends-0.8001, ExtUtils::PkgConfig-1.16, Math::Cephes::Matrix-0.5305, Math::MatrixReal-2.13, MIME::Base64-3.15, Pod::Usage-2.0, Statistics::PCA-0.0.1, Text::SimpleTable-2.07 + +### PRINSEQ/0.20.4-foss-2020b-Perl-5.32.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PRINSEQ/0.20.4-foss-2021b-Perl-5.34.0|x|x|x|-|x|x|x|x| -|PRINSEQ/0.20.4-foss-2020b-Perl-5.32.0|-|x|x|x|x|-|x|-| +Cairo-1.109, Contextual::Return-0.2.1, ExtUtils::Depends-0.8001, ExtUtils::PkgConfig-1.16, Math::Cephes::Matrix-0.5305, Math::MatrixReal-2.13, MIME::Base64-3.15, Pod::Usage-2.0, Statistics::PCA-0.0.1, Text::SimpleTable-2.07 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PRISMS-PF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PRISMS-PF.md index 4144a24140a2..861827470955 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PRISMS-PF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PRISMS-PF.md @@ -6,6 +6,10 @@ hide: PRISMS-PF ========= + +PRISMS-PF is a powerful, massively parallel finite element code for conducting phase field and other related simulations of microstructural evolution. + +https://prisms-center.github.io/phaseField # Available modules @@ -17,8 +21,8 @@ To start using PRISMS-PF, load one of these modules using a `module load` comman module load PRISMS-PF/2.2-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PRISMS-PF/2.2-foss-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PRISMS-PF/2.2-foss-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PROJ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PROJ.md index 42d97f40ccaf..9668967ec959 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PROJ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PROJ.md @@ -6,6 +6,10 @@ hide: PROJ ==== + +Program proj is a standard Unix filter function which convertsgeographic longitude and latitude coordinates into cartesian coordinates + +https://proj.org # Available modules @@ -14,17 +18,18 @@ The overview below shows which PROJ installations are available per HPC-UGent Ti To start using PROJ, load one of these modules using a `module load` command like: ```shell -module load PROJ/9.1.1-GCCcore-12.2.0 +module load PROJ/9.2.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PROJ/9.1.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|PROJ/9.0.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|PROJ/8.1.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|PROJ/8.0.1-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|PROJ/7.2.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|PROJ/7.0.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|PROJ/6.2.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PROJ/9.2.0-GCCcore-12.3.0|x|x|x|x|x|x| +|PROJ/9.1.1-GCCcore-12.2.0|x|x|x|x|x|x| +|PROJ/9.0.0-GCCcore-11.3.0|x|x|x|x|x|x| +|PROJ/8.1.0-GCCcore-11.2.0|x|x|x|x|x|x| +|PROJ/8.0.1-GCCcore-10.3.0|x|x|x|x|x|x| +|PROJ/7.2.1-GCCcore-10.2.0|-|x|x|x|x|x| +|PROJ/7.0.0-GCCcore-9.3.0|-|x|x|-|x|x| +|PROJ/6.2.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pandoc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pandoc.md index 9ba016be1ce9..940e889bbef2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pandoc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pandoc.md @@ -6,6 +6,10 @@ hide: Pandoc ====== + +If you need to convert files from one markup format into another, pandoc is your swiss-army knife + +https://pandoc.org # Available modules @@ -17,8 +21,8 @@ To start using Pandoc, load one of these modules using a `module load` command l module load Pandoc/2.13 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Pandoc/2.13|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Pandoc/2.13|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pango.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pango.md index b5b6d8375791..78a2fa014bf9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pango.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pango.md @@ -6,6 +6,10 @@ hide: Pango ===== + +Pango is a library for laying out and rendering of text, with an emphasis on internationalization.Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in thecontext of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x. + +https://www.pango.org/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which Pango installations are available per HPC-UGent T To start using Pango, load one of these modules using a `module load` command like: ```shell -module load Pango/1.50.12-GCCcore-12.2.0 +module load Pango/1.50.14-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Pango/1.50.12-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Pango/1.50.7-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Pango/1.48.8-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Pango/1.48.5-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Pango/1.47.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Pango/1.44.7-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Pango/1.44.7-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Pango/1.50.14-GCCcore-12.3.0|x|x|x|x|x|x| +|Pango/1.50.12-GCCcore-12.2.0|x|x|x|x|x|x| +|Pango/1.50.7-GCCcore-11.3.0|x|x|x|x|x|x| +|Pango/1.48.8-GCCcore-11.2.0|x|x|x|x|x|x| +|Pango/1.48.5-GCCcore-10.3.0|x|x|x|x|x|x| +|Pango/1.47.0-GCCcore-10.2.0|x|x|x|x|x|x| +|Pango/1.44.7-GCCcore-9.3.0|-|x|x|-|x|x| +|Pango/1.44.7-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ParMETIS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ParMETIS.md index 1ce590ba881c..af9877740cc9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ParMETIS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ParMETIS.md @@ -6,6 +6,10 @@ hide: ParMETIS ======== + +ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes. + +http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview # Available modules @@ -17,12 +21,12 @@ To start using ParMETIS, load one of these modules using a `module load` command module load ParMETIS/4.0.3-iimpi-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ParMETIS/4.0.3-iimpi-2020a|-|x|x|-|x|x|x|x| -|ParMETIS/4.0.3-iimpi-2019b|-|x|x|-|x|x|-|x| -|ParMETIS/4.0.3-gompi-2022a|x|x|x|-|x|x|x|x| -|ParMETIS/4.0.3-gompi-2021a|-|x|x|-|x|x|x|x| -|ParMETIS/4.0.3-gompi-2019b|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ParMETIS/4.0.3-iimpi-2020a|-|x|x|-|x|x| +|ParMETIS/4.0.3-iimpi-2019b|-|x|x|-|x|x| +|ParMETIS/4.0.3-gompi-2022a|x|x|x|x|x|x| +|ParMETIS/4.0.3-gompi-2021a|-|x|x|-|x|x| +|ParMETIS/4.0.3-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ParMGridGen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ParMGridGen.md index 2fb48fa8acc0..6055759d8310 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ParMGridGen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ParMGridGen.md @@ -6,6 +6,10 @@ hide: ParMGridGen =========== + +ParMGridGen is an MPI-based parallel library that is based on the serial package MGridGen, that implements (serial) algorithms for obtaining a sequence of successive coarse grids that are well-suited for geometric multigrid methods. + +http://www-users.cs.umn.edu/~moulitsa/software.html # Available modules @@ -17,9 +21,9 @@ To start using ParMGridGen, load one of these modules using a `module load` comm module load ParMGridGen/1.0-iimpi-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ParMGridGen/1.0-iimpi-2019b|-|x|x|-|x|x|-|x| -|ParMGridGen/1.0-gompi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ParMGridGen/1.0-iimpi-2019b|-|x|x|-|x|x| +|ParMGridGen/1.0-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ParaView.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ParaView.md index 5721dae2ff50..adfe4ae245b5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ParaView.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ParaView.md @@ -6,6 +6,10 @@ hide: ParaView ======== + +ParaView is a scientific parallel visualizer. + +https://www.paraview.org # Available modules @@ -14,19 +18,20 @@ The overview below shows which ParaView installations are available per HPC-UGen To start using ParaView, load one of these modules using a `module load` command like: ```shell -module load ParaView/5.10.1-foss-2022a-mpi +module load ParaView/5.11.2-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ParaView/5.10.1-foss-2022a-mpi|x|x|x|x|x|x|x|x| -|ParaView/5.9.1-intel-2021a-mpi|-|x|x|-|x|x|x|x| -|ParaView/5.9.1-foss-2021b-mpi|x|x|x|x|x|x|x|x| -|ParaView/5.9.1-foss-2021a-mpi|x|x|x|x|x|x|x|x| -|ParaView/5.8.1-intel-2020b-mpi|-|x|-|-|-|-|-|-| -|ParaView/5.8.1-foss-2020b-mpi|x|x|x|x|x|x|x|x| -|ParaView/5.8.0-foss-2020a-Python-3.8.2-mpi|-|x|x|-|x|x|x|x| -|ParaView/5.6.2-foss-2019b-Python-3.7.4-mpi|x|x|x|-|x|x|x|x| -|ParaView/5.4.1-foss-2019b-Python-2.7.16-mpi|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ParaView/5.11.2-foss-2023a|x|x|x|x|x|x| +|ParaView/5.10.1-foss-2022a-mpi|x|x|x|x|x|x| +|ParaView/5.9.1-intel-2021a-mpi|-|x|x|-|x|x| +|ParaView/5.9.1-foss-2021b-mpi|x|x|x|x|x|x| +|ParaView/5.9.1-foss-2021a-mpi|x|x|x|x|x|x| +|ParaView/5.8.1-intel-2020b-mpi|-|x|-|-|-|-| +|ParaView/5.8.1-foss-2020b-mpi|x|x|x|x|x|x| +|ParaView/5.8.0-foss-2020a-Python-3.8.2-mpi|-|x|x|-|x|x| +|ParaView/5.6.2-foss-2019b-Python-3.7.4-mpi|x|x|x|-|x|x| +|ParaView/5.4.1-foss-2019b-Python-2.7.16-mpi|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ParmEd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ParmEd.md index 25bf027949ac..9492e6063210 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ParmEd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ParmEd.md @@ -6,6 +6,10 @@ hide: ParmEd ====== + +ParmEd is a general tool for aiding in investigations of biomolecular systems using popular molecular simulation packages, like Amber, CHARMM, and OpenMM written in Python. + +https://parmed.github.io/ParmEd # Available modules @@ -17,9 +21,9 @@ To start using ParmEd, load one of these modules using a `module load` command l module load ParmEd/3.2.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ParmEd/3.2.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|ParmEd/3.2.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ParmEd/3.2.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|ParmEd/3.2.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Parsl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Parsl.md new file mode 100644 index 000000000000..aab15ad9288f --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Parsl.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +Parsl +===== + + +Parsl extends parallelism in Python beyond a single computer.You can use Parsl just like Python's parallel executors but across multiplecores and nodes. However, the real power of Parsl is in expressing multi-stepworkflows of functions. Parsl lets you chain functions together and will launcheach function as inputs and computing resources are available. + +https://parsl-project.org/ +# Available modules + + +The overview below shows which Parsl installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Parsl, load one of these modules using a `module load` command like: + +```shell +module load Parsl/2023.7.17-GCCcore-11.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Parsl/2023.7.17-GCCcore-11.3.0|x|x|x|x|x|x| + + +### Parsl/2023.7.17-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +globus-sdk-3.25.0, parsl-2023.7.17, PyJWT-2.8.0, setproctitle-1.3.2, tblib-1.7.0, typeguard-2.13.3, types-paramiko-3.2.0.1, types-requests-2.31.0.2, types-six-1.16.21.9, types-urllib3-1.26.25.14, typing-extensions-4.7.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PartitionFinder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PartitionFinder.md index a4e273996e8a..ead28a0b423a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PartitionFinder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PartitionFinder.md @@ -6,6 +6,10 @@ hide: PartitionFinder =============== + +PartitionFinder 2 is a Python program for simultaneouslychoosing partitioning schemes and models of molecular evolution for phylogeneticanalyses of DNA, protein, and morphological data. You can PartitionFinder 2before running a phylogenetic analysis, in order to decide how to divide upyour sequence data into separate blocks before analysis, and to simultaneouslyperform model selection on each of those blocks. + +https://www.robertlanfear.com/partitionfinder # Available modules @@ -17,8 +21,8 @@ To start using PartitionFinder, load one of these modules using a `module load` module load PartitionFinder/2.1.1-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PartitionFinder/2.1.1-intel-2019b-Python-2.7.16|-|x|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PartitionFinder/2.1.1-intel-2019b-Python-2.7.16|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Perl-bundle-CPAN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Perl-bundle-CPAN.md index 8034e412614d..2d9757b5b63a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Perl-bundle-CPAN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Perl-bundle-CPAN.md @@ -6,6 +6,10 @@ hide: Perl-bundle-CPAN ================ + +A set of common packages from CPAN + +https://www.perl.org/ # Available modules @@ -17,8 +21,15 @@ To start using Perl-bundle-CPAN, load one of these modules using a `module load` module load Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0|x|x|x|x|x|x| + + +### Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| +Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.335, App::cpanminus-1.7046, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::COW-0.007, B::Hooks::EndOfScope-0.26, B::Lint-1.20, boolean-0.46, Business::ISBN-3.008, Business::ISBN::Data-20230516.001, Canary::Stability-2013, Capture::Tiny-0.48, Carp::Clan-6.08, Carp::Heavy-1.50, CGI-4.57, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Method::Modifiers-2.15, Class::Singleton-1.6, Class::Tiny-1.008, Class::Trigger-0.15, Class::XSAccessor-1.19, Clone-0.46, Clone::Choose-0.010, common::sense-3.75, Compress::Raw::Zlib-2.204, Config::General-2.65, Config::INI-0.029, Config::MVP-2.200013, Config::MVP::Reader::INI-2.101465, Config::Simple-4.58, Config::Tiny-2.29, Const::Exporter-1.2.2, Const::Fast-0.014, CPAN::Meta::Check-0.017, CPAN::Uploader-0.103018, CPANPLUS-0.9914, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.114, Data::Section-0.200008, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.59, DateTime::Locale-1.38, DateTime::TimeZone-2.60, DateTime::Tiny-1.07, DBD::CSV-0.60, DBD::SQLite-1.72, DBI-1.643, DBIx::Admin::CreateTable-2.11, DBIx::Admin::DSNManager-2.02, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.16, Devel::Cycle-1.12, Devel::FindPerl-0.016, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::Size-0.83, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.030, Email::Date::Format-1.008, Encode-3.19, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter::Declare-0.114, Exporter::Tiny-1.006002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.26, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.70, ExtUtils::ParseXS-3.44, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.16, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.15, File::Next-1.18, File::pushd-1.016, File::Remove-1.61, File::ShareDir-1.118, File::ShareDir::Install-0.14, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.014, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long::Descriptive-0.111, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9726, Graph::ReadWrite-2.10, Hash::Merge-0.302, Hash::Objectify-0.008, Heap-0.80, Hook::LexWrap-0.26, HTML::Entities::Interpolate-1.10, HTML::Form-6.11, HTML::Parser-3.81, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::CookieJar-0.014, HTTP::Cookies-6.10, HTTP::Daemon-6.16, HTTP::Date-6.05, HTTP::Message-6.44, HTTP::Negotiate-6.01, HTTP::Tiny-0.082, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Importer-0.026, Inline-0.86, IO::Compress::Zip-2.204, IO::HTML-1.004, IO::Socket::SSL-2.083, IO::String-1.08, IO::Stringy-2.113, IO::TieCombine-1.005, IO::Tty-1.17, IO::Tty-1.17, IPC::Cmd-1.04, IPC::Run-20220807.0, IPC::Run3-0.048, IPC::System::Simple-1.30, JSON-4.10, JSON::MaybeXS-1.004005, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.59, List::UtilsBy-0.12, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.71, Log::Dispatch::Array-1.005, Log::Dispatchouli-3.002, Log::Handler-0.90, Log::Log4perl-1.57, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.34, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.70, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.884, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-v1.013.1, MIME::Lite-3.033, MIME::Types-2.24, Mixin::Linewise::Readers-0.111, Mock::Quick-1.111, Module::Build-0.4234, Module::Build::Tiny-0.045, Module::Build::XSUtil-0.19, Module::CoreList-5.20230423, Module::Implementation-0.09, Module::Install-1.21, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000038, Module::Path-0.19, Module::Path-0.19, Module::Pluggable-5.2, Module::Runtime-0.016, Module::Runtime::Conflicts-0.003, Moo-2.005005, Moose-2.2203, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.007, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.203, MooseX::Types-0.50, MooseX::Types::Perl-0.101344, Mouse-v2.5.10, Mozilla::CA-20221114, MRO::Compat-0.15, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.15, Net::HTTP-6.22, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.92, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.18, Package::Stash-0.40, Package::Stash::XS-0.30, PadWalker-2.5, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.31, Params::ValidationCompiler-0.31, parent-0.241, Parse::RecDescent-1.967015, Parse::Yapp-1.21, Path::Tiny-0.144, PDF::API2-2.044, Perl::OSType-1.010, Perl::PrereqScanner-1.100, PerlIO::utf8_strict-0.010, Pod::Elemental-0.103006, Pod::Escapes-1.07, Pod::Eventual-0.094003, Pod::LaTeX-0.61, Pod::Man-5.01, Pod::Parser-1.66, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.45, Pod::Weaver-4.019, PPI-1.276, Readonly-2.05, Ref::Util-0.204, Regexp::Common-2017060201, Role::HasMessage-0.007, Role::Identifiable::HasIdent-0.009, Role::Tiny-2.002004, Scalar::Util-1.63, Scalar::Util::Numeric-0.40, Scope::Guard-0.21, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.036, Software::License-0.104003, Specio-0.48, Spiffy-0.46, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.25, strictures-2.000006, String::Errf-0.009, String::Flogger-1.101246, String::Formatter-1.235, String::Print-0.94, String::RewritePrefix-0.009, String::Truncate-1.100603, String::TtyLength-0.03, Sub::Exporter-0.989, Sub::Exporter::ForMethods-0.100055, Sub::Exporter::GlobExporter-0.006, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Info-0.002, Sub::Install-0.929, Sub::Name-0.27, Sub::Quote-2.006008, Sub::Uplevel-0.2800, SVG-2.87, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Linux::Device::CPU-0.7905, Sys::Info::Driver::Unknown-0.79, Sys::Info::Driver::Unknown::Device::CPU-0.79, Template-3.101, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.45, Term::Table-0.016, Term::UI-0.50, Test-1.26, Test2::Plugin::NoWarnings-0.09, Test2::Require::Module-0.000155, Test::Base-0.89, Test::CheckDeps-0.010, Test::ClassAPI-1.07, Test::CleanNamespaces-0.24, Test::Deep-1.204, Test::Differences-0.69, Test::Exception-0.43, Test::FailWarnings-0.008, Test::Fatal-0.017, Test::File-1.993, Test::File::ShareDir::Dist-1.001002, Test::Harness-3.44, Test::LeakTrace-0.17, Test::Memory::Cycle-1.06, Test::More::UTF8-0.05, Test::Most-0.38, Test::Needs-0.002010, Test::NoWarnings-1.06, Test::Object-0.08, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302195, Test::SubCalls-1.10, Test::Sys::Info-0.23, Test::Version-2.09, Test::Warn-0.37, Test::Warnings-0.031, Test::Without::Module-0.21, Test::YAML-1.07, Text::Aligner-0.16, Text::Balanced-2.06, Text::CSV-2.02, Text::CSV_XS-1.50, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::Soundex-3.05, Text::Table-1.135, Text::Table::Manifold-1.03, Text::Template-1.61, Throwable-1.001, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.35, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.31, Type::Tiny-2.004000, Types::Serialiser-1.01, Types::Serialiser-1.01, Unicode::EastAsianWidth-12.0, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, Unix::Processors-2.046, URI-5.19, Variable::Magic-0.63, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::Writer-0.900, XML::XPath-1.48, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.74 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Perl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Perl.md index 870f238bc572..330e078d792a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Perl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Perl.md @@ -6,6 +6,10 @@ hide: Perl ==== + +Larry Wall's Practical Extraction and Report Language + +https://www.perl.org/ # Available modules @@ -14,25 +18,87 @@ The overview below shows which Perl installations are available per HPC-UGent Ti To start using Perl, load one of these modules using a `module load` command like: ```shell -module load Perl/5.36.1-GCCcore-12.3.0 +module load Perl/5.38.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Perl/5.36.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Perl/5.36.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Perl/5.34.1-GCCcore-11.3.0-minimal|x|x|x|x|x|x|x|x| -|Perl/5.34.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Perl/5.34.0-GCCcore-11.2.0-minimal|x|x|x|x|x|x|x|x| -|Perl/5.34.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Perl/5.32.1-GCCcore-10.3.0-minimal|x|x|x|x|x|x|x|x| -|Perl/5.32.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Perl/5.32.0-GCCcore-10.2.0-minimal|x|x|x|x|x|x|x|x| -|Perl/5.32.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Perl/5.30.2-GCCcore-9.3.0-minimal|x|x|x|x|x|x|x|x| -|Perl/5.30.2-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Perl/5.30.0-GCCcore-8.3.0-minimal|x|x|x|x|x|x|x|x| -|Perl/5.30.0-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|Perl/5.28.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Perl/5.38.0-GCCcore-13.2.0|x|x|x|x|x|x| +|Perl/5.36.1-GCCcore-12.3.0|x|x|x|x|x|x| +|Perl/5.36.0-GCCcore-12.2.0|x|x|x|x|x|x| +|Perl/5.34.1-GCCcore-11.3.0-minimal|x|x|x|x|x|x| +|Perl/5.34.1-GCCcore-11.3.0|x|x|x|x|x|x| +|Perl/5.34.0-GCCcore-11.2.0-minimal|x|x|x|x|x|x| +|Perl/5.34.0-GCCcore-11.2.0|x|x|x|x|x|x| +|Perl/5.32.1-GCCcore-10.3.0-minimal|x|x|x|x|x|x| +|Perl/5.32.1-GCCcore-10.3.0|x|x|x|x|x|x| +|Perl/5.32.0-GCCcore-10.2.0-minimal|x|x|x|x|x|x| +|Perl/5.32.0-GCCcore-10.2.0|x|x|x|x|x|x| +|Perl/5.30.2-GCCcore-9.3.0-minimal|x|x|x|x|x|x| +|Perl/5.30.2-GCCcore-9.3.0|x|x|x|x|x|x| +|Perl/5.30.0-GCCcore-8.3.0-minimal|x|x|x|x|x|x| +|Perl/5.30.0-GCCcore-8.3.0|x|x|x|x|x|x| +|Perl/5.28.1-GCCcore-8.2.0|-|x|-|-|-|-| + + +### Perl/5.38.0-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +Carp-1.50, constant-1.33, Data::Dumper-2.183, Exporter-5.77, File::Path-2.18, File::Spec-3.75, Getopt::Long-2.54, IO::File-1.51, Text::ParseWords-3.31, Thread::Queue-3.13, threads-2.21 + +### Perl/5.36.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +Carp-1.50, constant-1.33, Data::Dumper-2.183, Exporter-5.77, File::Path-2.18, File::Spec-3.75, Getopt::Long-2.54, IO::File-1.51, Text::ParseWords-3.31, Thread::Queue-3.13, threads-2.21 + +### Perl/5.36.0-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.334, App::cpanminus-1.7046, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.26, B::Lint-1.20, boolean-0.46, Business::ISBN-3.007, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Tiny-1.008, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.65, Config::INI-0.027, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.28, constant-1.33, CPAN::Meta::Check-0.014, CPANPLUS-0.9914, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper-2.183, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.112, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.58, DateTime::Locale-1.36, DateTime::TimeZone-2.53, DateTime::Tiny-1.07, DBD::CSV-0.59, DBD::SQLite-1.70, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.16, Devel::Cycle-1.12, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::Size-0.83, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.025, Email::Date::Format-1.005, Encode-3.19, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.004000, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.26, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.64, ExtUtils::ParseXS-3.44, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.16, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.15, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.61, File::ShareDir-1.118, File::ShareDir::Install-0.14, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.013, File::Spec-3.75, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.110, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9725, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.10, HTML::Parser-3.78, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.14, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.37, HTTP::Tiny-0.082, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Importer-0.026, Inline-0.86, IO::Compress::Bzip2-2.201, IO::HTML-1.004, IO::Socket::SSL-2.075, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20220807.0, IPC::Run3-0.048, IPC::System::Simple-1.30, JSON-4.09, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.63, List::UtilsBy-0.12, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.023, Log::Handler-0.90, Log::Log4perl-1.56, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.33, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.67, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.879, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-1.013.1, MIME::Lite-3.033, MIME::Types-2.22, Mixin::Linewise::Readers-0.110, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20220820, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Path-0.19, Module::Pluggable-5.2, Module::Runtime-0.016, Module::Runtime::Conflicts-0.003, Moo-2.005004, Moose-2.2201, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.006, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.201, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20211001, MRO::Compat-0.15, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.14, Net::HTTP-6.22, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.92, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.40, Package::Stash::XS-0.30, PadWalker-2.5, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.124, PDF::API2-2.043, Perl::OSType-1.010, PerlIO::utf8_strict-0.009, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094002, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.43, Pod::Weaver-4.018, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.008, Role::Tiny-2.002004, Scalar::Util-1.63, Scalar::Util::Numeric-0.40, Scope::Guard-0.21, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.036, Software::License-0.104002, Specio-0.48, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.25, strictures-2.000006, String::Flogger-1.101245, String::Print-0.94, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.988, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Info-0.002, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.87, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Unknown-0.79, Template-3.101, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.42, Term::Table-0.016, Term::UI-0.50, Test-1.26, Test2::Plugin::NoWarnings-0.09, Test2::Require::Module-0.000145, Test::ClassAPI-1.07, Test::CleanNamespaces-0.24, Test::Deep-1.130, Test::Differences-0.69, Test::Exception-0.43, Test::Fatal-0.016, Test::File::ShareDir::Dist-1.001002, Test::Harness-3.44, Test::LeakTrace-0.17, Test::Memory::Cycle-1.06, Test::More-1.302191, Test::More::UTF8-0.05, Test::Most-0.37, Test::Needs-0.002009, Test::NoWarnings-1.06, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302191, Test::Version-2.09, Test::Warn-0.37, Test::Warnings-0.031, Test::Without::Module-0.20, Text::Aligner-0.16, Text::Balanced-2.06, Text::CSV-2.02, Text::CSV_XS-1.48, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.31, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.61, Thread::Queue-3.13, Throwable-1.000, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.31, Types::Serialiser-1.01, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, URI-5.12, URI::Escape-5.12, Variable::Magic-0.62, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.48, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.34.1-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.334, App::cpanminus-1.7046, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.26, B::Lint-1.20, boolean-0.46, Business::ISBN-3.007, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Tiny-1.008, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.65, Config::INI-0.027, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.28, constant-1.33, CPAN::Meta::Check-0.014, CPANPLUS-0.9914, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper-2.183, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.112, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.58, DateTime::Locale-1.35, DateTime::TimeZone-2.52, DateTime::Tiny-1.07, DBD::CSV-0.59, DBD::SQLite-1.70, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::Cycle-1.12, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::Size-0.83, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.024, Email::Date::Format-1.005, Encode-3.17, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.26, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.64, ExtUtils::ParseXS-3.44, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.16, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.15, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.60, File::ShareDir-1.118, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.013, File::Spec-3.75, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.110, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9725, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.78, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.14, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.36, HTTP::Tiny-0.080, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Importer-0.026, Inline-0.86, IO::Compress::Bzip2-2.106, IO::HTML-1.004, IO::Socket::SSL-2.074, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, IPC::System::Simple-1.30, JSON-4.05, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.62, List::UtilsBy-0.11, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.023, Log::Handler-0.90, Log::Log4perl-1.54, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.33, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.55, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.878, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-1.012.2, MIME::Lite-3.033, MIME::Types-2.22, Mixin::Linewise::Readers-0.110, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20220420, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Path-0.19, Module::Pluggable-5.2, Module::Runtime-0.016, Module::Runtime::Conflicts-0.003, Moo-2.005004, Moose-2.2201, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.201, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20211001, MRO::Compat-0.15, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.13, Net::HTTP-6.22, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.92, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.40, Package::Stash::XS-0.29, PadWalker-2.5, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.122, PDF::API2-2.043, Perl::OSType-1.010, PerlIO::utf8_strict-0.009, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094002, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.43, Pod::Weaver-4.018, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.002004, Scalar::Util-1.56, Scalar::Util::Numeric-0.40, Scope::Guard-0.21, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.032, Software::License-0.104001, Specio-0.47, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.25, strictures-2.000006, String::Flogger-1.101245, String::Print-0.94, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.988, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Info-0.002, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.86, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Unknown-0.79, Template-3.100, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.42, Term::Table-0.016, Term::UI-0.50, Test-1.26, Test2::Plugin::NoWarnings-0.09, Test2::Require::Module-0.000145, Test::ClassAPI-1.07, Test::CleanNamespaces-0.24, Test::Deep-1.130, Test::Differences-0.69, Test::Exception-0.43, Test::Fatal-0.016, Test::File::ShareDir::Dist-1.001002, Test::Harness-3.44, Test::LeakTrace-0.17, Test::Memory::Cycle-1.06, Test::More-1.302190, Test::More::UTF8-0.05, Test::Most-0.37, Test::Needs-0.002009, Test::NoWarnings-1.06, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302190, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.031, Test::Without::Module-0.20, Text::Aligner-0.16, Text::Balanced-2.04, Text::CSV-2.01, Text::CSV_XS-1.47, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.31, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.60, Thread::Queue-3.13, Throwable-1.000, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.31, Types::Serialiser-1.01, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, URI-5.10, URI::Escape-5.10, Variable::Magic-0.62, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.34.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.334, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.88, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.006, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.09, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.027, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.26, constant-1.33, CPANPLUS-0.9910, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.25, Data::Dumper-2.183, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.112, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.54, DateTime::Locale-1.32, DateTime::TimeZone-2.47, DateTime::Tiny-1.07, DBD::CSV-0.58, DBD::SQLite-1.70, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.007, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.024, Email::Date::Format-1.005, Encode-3.11, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.45, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.23, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.62, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.14, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.60, File::ShareDir-1.118, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2311, File::Which-1.27, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.109, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9722, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap::Fibonacci-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.76, HTML::Tagset-3.20, HTML::Template-2.97, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.12, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.33, HTTP::Tiny-0.078, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::HTML-1.004, IO::Socket::SSL-2.071, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, JSON-4.03, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.19, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.56, List::UtilsBy-0.11, local::lib-2.000029, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.023, Log::Handler-0.90, Log::Log4perl-1.54, Log::Message-0.08, Log::Message::Simple-0.10, Log::Report-1.33, Log::Report::Optional-1.07, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.55, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.874, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Charset-1.012.2, MIME::Lite-3.033, MIME::Types-2.21, Mixin::Linewise::Readers-0.110, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20210723, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.005004, Moose-2.2015, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.201, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20200520, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.13, Net::HTTP-6.21, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.90, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.39, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.118, PDF::API2-2.041, Perl::OSType-1.010, PerlIO::utf8_strict-0.008, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094002, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Parser-1.65, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.43, Pod::Weaver-4.018, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.002004, Scalar::Util-1.56, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.032, Software::License-0.104001, Specio-0.47, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::Print-0.94, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.988, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.86, Switch-2.17, Sys::Info-0.7811, Sys::Info::Base-0.7807, Sys::Info::Driver::Linux-0.7905, Sys::Info::Driver::Unknown-0.79, Template-3.009, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.42, Term::UI-0.48, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.68, Test::Exception-0.43, Test::Fatal-0.016, Test::Harness-3.42, Test::LeakTrace-0.17, Test::More-1.302186, Test::Most-0.37, Test::NoWarnings-1.06, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302186, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.031, Text::Aligner-0.16, Text::Balanced-2.04, Text::CSV-2.01, Text::CSV_XS-1.46, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.59, Thread::Queue-3.13, Throwable-1.000, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.30, Types::Serialiser-1.01, Unicode::LineBreak-2019.001, UNIVERSAL::moniker-0.08, Unix::Processors-2.046, URI-5.09, URI::Escape-5.09, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.32.1-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.201, aliased-0.34, AnyEvent-7.17, App::Cmd-0.333, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.86, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.006, Business::ISBN::Data-20210112.006, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.6, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200012, Config::Simple-4.58, Config::Tiny-2.26, constant-1.33, CPANPLUS-0.9910, Crypt::DES-2.07, Crypt::Rijndael-1.16, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.54, DateTime::Locale-1.31, DateTime::TimeZone-2.47, DateTime::Tiny-1.07, DBD::CSV-0.58, DBD::SQLite-1.66, DBI-1.643, DBIx::Admin::TableInfo-3.04, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.04, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.017, Email::Date::Format-1.005, Encode-3.08, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280236, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.62, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.006, File::Listing-6.14, File::Next-1.18, File::Path-2.18, File::pushd-1.016, File::Remove-1.60, File::ShareDir-1.118, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2311, File::Which-1.24, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.109, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9721, Graph::ReadWrite-2.10, Hash::Merge-0.302, Heap::Fibonacci-0.80, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.76, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.10, HTTP::Daemon-6.12, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.29, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::Compress::Bzip2-2.102, IO::HTML-1.004, IO::Socket::SSL-2.070, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.16, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, JSON-4.03, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.18, List::MoreUtils-0.430, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.56, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.022, Log::Handler-0.90, Log::Log4perl-1.54, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.10, LWP::Simple-6.53, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.874, Meta::Builder-0.004, MIME::Base64-3.16, MIME::Lite-3.031, MIME::Types-2.20, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20210420, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.36, Module::Load::Conditional-0.74, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.005004, Moose-2.2015, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20200520, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.13, Net::HTTP-6.21, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.90, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.39, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.102, Params::Validate-1.30, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.118, PDF::API2-2.040, Perl::OSType-1.010, PerlIO::utf8_strict-0.008, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.42, Pod::Weaver-4.017, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.002004, Scalar::Util-1.56, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Object-1.42, Set::Scalar-1.29, Shell-0.73, Socket-2.031, Software::License-0.103014, Specio-0.47, SQL::Abstract-2.000001, SQL::Statement-1.414, Statistics::Basic-1.6611, Statistics::Descriptive-3.0800, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100054, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.85, Switch-2.17, Template-3.009, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.37, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.67, Test::Exception-0.43, Test::Fatal-0.016, Test::Harness-3.42, Test::LeakTrace-0.17, Test::More-1.302183, Test::Most-0.37, Test::NoWarnings-1.04, Test::Output-1.033, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302183, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.030, Text::Aligner-0.16, Text::Balanced-2.04, Text::CSV-2.00, Text::CSV_XS-1.46, Text::Diff-1.45, Text::Format-0.62, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.59, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.32, Try::Tiny-0.30, Types::Serialiser-1.01, UNIVERSAL::moniker-0.08, URI-5.09, URI::Escape-5.09, version-0.9929, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.32.0-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.112, Algorithm::Diff-1.1903, aliased-0.34, AnyEvent-7.17, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.86, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.005, Business::ISBN::Data-20191107, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.15, Clone-0.45, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Simple-4.58, Config::Tiny-2.24, constant-1.33, CPANPLUS-0.9908, Crypt::DES-2.07, Crypt::Rijndael-1.14, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.226, Date::Handler-1.2, Date::Language-2.33, DateTime-1.52, DateTime::Locale-1.26, DateTime::TimeZone-2.39, DateTime::Tiny-1.07, DBD::CSV-0.55, DBD::SQLite-1.64, DBI-1.643, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.015, Email::Date::Format-1.005, Encode-3.07, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002002, ExtUtils::CBuilder-0.280234, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.46, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.18, File::Path-2.17, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.32, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.52, Getopt::Long::Descriptive-0.105, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.302, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.08, HTTP::Daemon-6.12, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.25, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::Compress::Bzip2-2.093, IO::File-1.42, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.42, IO::Socket-1.42, IO::Socket::SSL-2.068, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.14, IPC::Cmd-1.04, IPC::Run-20200505.0, IPC::Run3-0.048, JSON-4.02, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.16, List::MoreUtils-0.428, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.55, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.70, Log::Dispatchouli-2.021, Log::Handler-0.90, Log::Log4perl-1.50, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.09, LWP::Simple-6.47, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::Utils-1.14, Math::VecStat-0.08, MCE::Mutex-1.874, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.031, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20200717, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.72, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.004000, Moose-2.2013, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.10, Mozilla::CA-20200520, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.19, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.88, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.114, PDF::API2-2.037, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.40, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.001004, Scalar::List::Utils-1.55, Scalar::Util-1.55, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.030, Software::License-0.103014, Specio-0.46, SQL::Abstract-1.87, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.85, Switch-2.17, Template-3.009, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.36, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.67, Test::Exception-0.43, Test::Fatal-0.016, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302177, Test::Most-0.37, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.11, Test::RequiresInternet-0.05, Test::Simple-1.302177, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.030, Text::Aligner-0.16, Text::Balanced-2.03, Text::CSV-2.00, Text::CSV_XS-1.44, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.134, Text::Template-1.59, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9764, Time::Local-1.30, Time::Piece-1.3401, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, Types::Serialiser-1.0, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-1.76, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.30.2-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.111, Algorithm::Diff-1.1903, aliased-0.34, AnyEvent-7.17, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.86, Array::Transpose-0.06, Array::Utils-0.5, Authen::NTLM-1.09, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Business::ISBN-3.005, Business::ISBN::Data-20191107, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.08, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.14, Clone-0.43, Clone::Choose-0.010, common::sense-3.75, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Simple-4.58, Config::Tiny-2.24, constant-1.33, CPANPLUS-0.9906, Crypt::DES-2.07, Crypt::Rijndael-1.14, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.224, Date::Handler-1.2, Date::Language-2.32, DateTime-1.52, DateTime::Locale-1.25, DateTime::TimeZone-2.38, DateTime::Tiny-1.07, DBD::CSV-0.54, DBD::SQLite-1.64, DBI-1.643, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.14, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.014, Email::Date::Format-1.005, Encode-3.04, Encode::Locale-1.05, Error-0.17029, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002001, ExtUtils::CBuilder-0.280234, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.44, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.18, File::Path-2.16, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.30, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.51, Getopt::Long::Descriptive-0.105, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.300, HTML::Entities::Interpolate-1.10, HTML::Form-6.07, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.08, HTTP::Daemon-6.06, HTTP::Date-6.05, HTTP::Negotiate-6.01, HTTP::Request-6.22, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::Compress::Bzip2-2.096, IO::File-1.42, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.42, IO::Socket-1.42, IO::Socket::SSL-2.067, IO::String-1.08, IO::Stringy-2.113, IO::Tty-1.14, IPC::Cmd-1.04, IPC::Run-20180523.0, IPC::Run3-0.048, JSON-4.02, JSON::XS-4.03, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.16, List::MoreUtils-0.428, List::MoreUtils::XS-0.430, List::SomeUtils-0.58, List::Util-1.54, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.69, Log::Dispatchouli-2.019, Log::Handler-0.88, Log::Log4perl-1.49, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.07, LWP::Simple-6.43, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::VecStat-0.08, MCE::Mutex-1.866, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.031, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4231, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20200314, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.70, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.003006, Moose-2.2012, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.9, Mozilla::CA-20180117, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.19, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.88, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.112, PDF::API2-2.037, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103005, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.40, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.001004, Scalar::List::Utils-1.54, Scalar::Util-1.54, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.029, Software::License-0.103014, Specio-0.46, SQL::Abstract-1.86, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.008, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.26, Sub::Quote-2.006006, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.84, Switch-2.17, Template-3.007, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.36, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.130, Test::Differences-0.67, Test::Exception-0.43, Test::Fatal-0.014, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302172, Test::Most-0.35, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.10, Test::RequiresInternet-0.05, Test::Simple-1.302172, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.029, Text::Aligner-0.13, Text::Balanced-2.03, Text::CSV-2.00, Text::CSV_XS-1.41, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.133, Text::Template-1.58, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9760, Time::Local-1.30, Time::Piece-1.34, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, Types::Serialiser-1.0, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-3.31, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.46, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Expat-0.51, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.30, YAML::Tiny-1.73 + +### Perl/5.30.0-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.111, Algorithm::Diff-1.1903, aliased-0.34, AnyData-0.12, AnyEvent-7.16, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.80, Array::Transpose-0.06, Array::Utils-0.5, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Bundle::BioPerl-2.1.9, Canary::Stability-2013, Capture::Tiny-0.48, Carp-1.50, Carp::Clan-6.07, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.36, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.14, Clone-0.43, Clone::Choose-0.010, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Simple-4.58, Config::Tiny-2.24, constant-1.33, CPANPLUS-0.9178, Crypt::DES-2.07, Crypt::Rijndael-1.14, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.224, Date::Handler-1.2, Date::Language-2.30, DateTime-1.51, DateTime::Locale-1.24, DateTime::TimeZone-2.37, DateTime::Tiny-1.07, DBD::AnyData-0.110, DBD::SQLite-1.64, DBI-1.642, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.13, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.04, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.012, Email::Date::Format-1.005, Encode-3.02, Encode::Locale-1.05, Error-0.17028, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.73, Exporter::Declare-0.114, Exporter::Tiny-1.002001, ExtUtils::CBuilder-0.280234, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.21, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.44, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.45, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.18, File::Path-2.16, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.28, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.51, Getopt::Long::Descriptive-0.104, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.300, HTML::Entities::Interpolate-1.10, HTML::Form-6.04, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.04, HTTP::Daemon-6.06, HTTP::Date-6.02, HTTP::Negotiate-6.01, HTTP::Request-6.18, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, Inline-0.86, IO::File-1.42, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.42, IO::Socket-1.42, IO::Socket::SSL-2.066, IO::String-1.08, IO::Stringy-2.111, IO::Tty-1.12, IPC::Cmd-1.04, IPC::Run-20180523.0, IPC::Run3-0.048, JSON-4.02, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.15, List::MoreUtils-0.428, List::SomeUtils-0.56, List::Util-1.54, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.68, Log::Dispatchouli-2.019, Log::Handler-0.88, Log::Log4perl-1.49, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.04, LWP::Protocol::https-6.07, LWP::Simple-6.39, Mail::Util-2.21, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::VecStat-0.08, MCE::Mutex-1.866, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.030, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4229, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20200220, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.70, Module::Metadata-1.000037, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.003004, Moose-2.2011, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.11, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.9, Mozilla::CA-20180117, MRO::Compat-0.13, namespace::autoclean-0.29, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.19, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.88, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.238, Parse::RecDescent-1.967015, Path::Tiny-0.108, PDF::API2-2.035, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103004, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.14, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.40, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.000008, Scalar::List::Utils-1.52, Scalar::Util-1.54, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.029, Software::License-0.103014, Specio-0.44, SQL::Abstract-1.86, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.007, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.21, Sub::Quote-2.006003, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.84, Switch-2.17, Template-2.29, Template::Plugin::Number::Format-1.06, Term::Encoding-0.03, Term::ReadKey-2.38, Term::ReadLine::Gnu-1.36, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.128, Test::Differences-0.67, Test::Exception-0.43, Test::Exception::LessClever-0.009, Test::Fatal-0.014, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302171, Test::Most-0.35, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.10, Test::RequiresInternet-0.05, Test::Simple-1.302168, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.026, Text::Aligner-0.13, Text::Balanced-2.03, Text::CSV-2.00, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.133, Text::Template-1.57, Thread::Queue-3.13, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::HiRes-1.9760, Time::Local-1.30, Time::Piece-1.33, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-3.31, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.44, XML::RegExp-0.04, XML::SAX-1.02, XML::SAX::Base-1.09, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.29, YAML::Tiny-1.73 + +### Perl/5.28.1-GCCcore-8.2.0 + +This is a list of extensions included in the module: + +Algorithm::Dependency-1.111, Algorithm::Diff-1.1903, aliased-0.34, AnyData-0.12, AnyEvent-7.15, App::Cmd-0.331, App::cpanminus-1.7044, AppConfig-1.71, Archive::Extract-0.80, Array::Transpose-0.06, Array::Utils-0.5, Authen::SASL-2.16, AutoLoader-5.74, B::Hooks::EndOfScope-0.24, B::Lint-1.20, boolean-0.46, Bundle::BioPerl-2.1.9, Canary::Stability-2012, Capture::Tiny-0.48, Carp-1.50, Carp-1.50, Carp::Clan-6.07, Carp::Heavy-1.50, Class::Accessor-0.51, Class::Data::Inheritable-0.08, Class::DBI-v3.0.17, Class::DBI::SQLite-0.11, Class::Inspector-1.32, Class::ISA-0.36, Class::Load-0.25, Class::Load::XS-0.10, Class::Singleton-1.5, Class::Trigger-0.14, Clone-0.41, Clone::Choose-0.010, Config::General-2.63, Config::INI-0.025, Config::MVP-2.200011, Config::Tiny-2.23, constant-1.33, CPANPLUS-0.9176, Crypt::DES-2.07, Crypt::Rijndael-1.13, Cwd-3.75, Cwd::Guard-0.05, Data::Dump-1.23, Data::Dumper-2.173, Data::Dumper::Concise-2.023, Data::Grove-0.08, Data::OptList-0.110, Data::Section-0.200007, Data::Section::Simple-0.07, Data::Stag-0.14, Data::Types-0.17, Data::UUID-1.224, Date::Handler-1.2, Date::Language-2.30, DateTime-1.50, DateTime::Locale-1.23, DateTime::TimeZone-2.23, DateTime::Tiny-1.07, DBD::AnyData-0.110, DBD::SQLite-1.62, DBI-1.642, DBIx::Admin::TableInfo-3.03, DBIx::ContextualFetch-1.03, DBIx::Simple-1.37, Devel::CheckCompiler-0.07, Devel::CheckLib-1.13, Devel::GlobalDestruction-0.14, Devel::OverloadInfo-0.005, Devel::StackTrace-2.03, Digest::HMAC-1.03, Digest::MD5::File-0.08, Digest::SHA1-2.13, Dist::CheckConflicts-0.11, Dist::Zilla-6.012, Email::Date::Format-1.005, Encode-3.01, Encode::Locale-1.05, Error-0.17027, Eval::Closure-0.14, Exception::Class-1.44, Expect-1.35, Exporter-5.73, Exporter-5.74, Exporter::Declare-0.114, Exporter::Tiny-1.002001, ExtUtils::CBuilder-0.280231, ExtUtils::Config-0.008, ExtUtils::Constant-0.25, ExtUtils::CppGuess-0.19, ExtUtils::Helpers-0.026, ExtUtils::InstallPaths-0.012, ExtUtils::MakeMaker-7.36, ExtUtils::ParseXS-3.35, Fennec::Lite-0.004, File::CheckTree-4.42, File::Copy::Recursive-0.44, File::Copy::Recursive::Reduced-0.006, File::Find::Rule-0.34, File::Find::Rule::Perl-1.15, File::Grep-0.02, File::HomeDir-1.004, File::Listing-6.04, File::Next-1.16, File::Path-2.16, File::Path-2.16, File::pushd-1.016, File::Remove-1.58, File::ShareDir-1.116, File::ShareDir::Install-0.13, File::Slurp-9999.26, File::Slurp::Tiny-0.004, File::Slurper-0.012, File::Spec-3.75, File::Spec-3.75, File::Temp-0.2309, File::Temp-0.2309, File::Which-1.23, Font::TTF-1.06, Getopt::Long-2.50, Getopt::Long::Descriptive-0.103, Git-0.42, GO-0.04, GO::Utils-0.15, Graph-0.9704, Graph::ReadWrite-2.09, Hash::Merge-0.300, HTML::Entities::Interpolate-1.10, HTML::Form-6.03, HTML::Parser-3.72, HTML::Tagset-3.20, HTML::Tree-5.07, HTTP::Cookies-6.04, HTTP::Daemon-6.01, HTTP::Date-6.02, HTTP::Negotiate-6.01, HTTP::Request-6.18, HTTP::Tiny-0.076, if-0.0608, Ima::DBI-0.35, Import::Into-1.002005, IO::File-1.39, IO::Handle-1.42, IO::HTML-1.001, IO::Seekable-1.42, IO::Select-1.39, IO::Socket-1.39, IO::Socket::SSL-2.066, IO::String-1.08, IO::Stringy-2.111, IO::Tty-1.12, IPC::Cmd-1.02, IPC::Run-20180523.0, IPC::Run3-0.048, JSON-4.02, Lingua::EN::PluralToSingular-0.21, List::AllUtils-0.15, List::MoreUtils-0.428, List::SomeUtils-0.56, List::Util-1.54, List::UtilsBy-0.11, Locale::Maketext::Simple-0.21, Log::Dispatch-2.68, Log::Dispatchouli-2.016, Log::Handler-0.88, Log::Log4perl-1.49, Log::Message-0.08, Log::Message::Simple-0.10, Logger::Simple-2.0, LWP::MediaTypes-6.02, LWP::Simple-6.37, Mail::Util-2.20, Math::Bezier-0.01, Math::CDF-0.1, Math::Round-0.07, Math::VecStat-0.08, MCE::Mutex-1.866, Meta::Builder-0.004, MIME::Base64-3.15, MIME::Lite-3.030, MIME::Types-2.17, Mixin::Linewise::Readers-0.108, Mock::Quick-1.111, Module::Build-0.4224, Module::Build::Tiny-0.039, Module::Build::XSUtil-0.19, Module::CoreList-5.20190524, Module::Implementation-0.09, Module::Install-1.19, Module::Load-0.34, Module::Load::Conditional-0.68, Module::Metadata-1.000036, Module::Pluggable-5.2, Module::Runtime-0.016, Moo-2.003004, Moose-2.2011, MooseX::LazyRequire-0.11, MooseX::OneArgNew-0.005, MooseX::Role::Parameterized-1.10, MooseX::SetOnce-0.200002, MooseX::Types-0.50, MooseX::Types::Perl-0.101343, Mouse-v2.5.6, MRO::Compat-0.13, namespace::autoclean-0.28, namespace::clean-0.27, Net::Domain-3.11, Net::HTTP-6.18, Net::SMTP::SSL-1.04, Net::SNMP-v6.0.1, Net::SSLeay-1.85, Number::Compare-0.03, Number::Format-1.75, Object::Accessor-0.48, Object::InsideOut-4.05, Package::Constants-0.06, Package::DeprecationManager-0.17, Package::Stash-0.38, Package::Stash::XS-0.29, Parallel::ForkManager-2.02, Params::Check-0.38, Params::Util-1.07, Params::Validate-1.29, Params::ValidationCompiler-0.30, parent-0.237, Parse::RecDescent-1.967015, Path::Tiny-0.108, PDF::API2-2.033, Perl::OSType-1.010, PerlIO::utf8_strict-0.007, Pod::Elemental-0.103004, Pod::Escapes-1.07, Pod::Eventual-0.094001, Pod::LaTeX-0.61, Pod::Man-4.12, Pod::Plainer-1.04, Pod::POM-2.01, Pod::Simple-3.38, Pod::Weaver-4.015, Readonly-2.05, Regexp::Common-2017060201, Role::HasMessage-0.006, Role::Identifiable::HasIdent-0.007, Role::Tiny-2.000006, Scalar::List::Utils-1.50, Scalar::Util-1.50, Scalar::Util::Numeric-0.40, Set::Array-0.30, Set::IntervalTree-0.12, Set::IntSpan-1.19, Set::IntSpan::Fast-1.15, Set::Scalar-1.29, Shell-0.73, Socket-2.029, Software::License-0.103014, Specio-0.43, SQL::Abstract-1.86, SQL::Statement-1.412, Statistics::Basic-1.6611, Statistics::Descriptive-3.0702, Storable-3.15, strictures-2.000006, String::Flogger-1.101245, String::RewritePrefix-0.007, String::Truncate-1.100602, Sub::Exporter-0.987, Sub::Exporter::ForMethods-0.100052, Sub::Exporter::Progressive-0.001013, Sub::Identify-0.14, Sub::Install-0.928, Sub::Name-0.21, Sub::Quote-2.006003, Sub::Uplevel-0.2800, Sub::Uplevel-0.2800, SVG-2.84, Switch-2.17, Template-2.28, Template::Plugin::Number::Format-1.06, Term::Encoding-0.02, Term::ReadKey-2.38, Term::UI-0.46, Test-1.26, Test::ClassAPI-1.07, Test::Deep-1.128, Test::Differences-0.67, Test::Exception-0.43, Test::Exception::LessClever-0.009, Test::Fatal-0.014, Test::Harness-3.42, Test::Harness-3.42, Test::LeakTrace-0.16, Test::More-1.302162, Test::Most-0.35, Test::NoWarnings-1.04, Test::Output-1.031, Test::Pod-1.52, Test::Requires-0.10, Test::Simple-1.302162, Test::Version-2.09, Test::Warn-0.36, Test::Warnings-0.026, Text::Aligner-0.13, Text::Balanced-2.03, Text::CSV-1.99, Text::Diff-1.45, Text::Format-0.61, Text::Glob-0.11, Text::Iconv-1.7, Text::ParseWords-3.30, Text::Soundex-3.05, Text::Table-1.133, Text::Template-1.55, Throwable-0.200013, Tie::Function-0.02, Tie::IxHash-1.23, Time::Local-1.28, Time::Piece-1.33, Time::Piece::MySQL-0.06, Tree::DAG_Node-1.31, Try::Tiny-0.30, UNIVERSAL::moniker-0.08, URI-1.76, URI::Escape-3.31, version-0.9924, version-0.9924, Want-0.29, WWW::RobotRules-6.02, XML::Bare-0.53, XML::DOM-1.46, XML::Filter::BufferText-1.01, XML::NamespaceSupport-1.12, XML::Parser-2.44_01, XML::RegExp-0.04, XML::SAX-1.00, XML::SAX::Base-1.09, XML::SAX::Writer-0.57, XML::Simple-2.25, XML::Tiny-2.07, XML::Twig-3.52, XML::XPath-1.44, XSLoader-0.24, YAML-1.29, YAML::Tiny-1.73 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Phenoflow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Phenoflow.md index 19da5364f94f..c7eb072a5cdc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Phenoflow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Phenoflow.md @@ -6,6 +6,10 @@ hide: Phenoflow ========= + +R package offering functionality for the advanced analysis of microbial flow cytometry data + +https://github.com/rprops/Phenoflow_package # Available modules @@ -17,8 +21,8 @@ To start using Phenoflow, load one of these modules using a `module load` comman module load Phenoflow/1.1.2-20200917-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Phenoflow/1.1.2-20200917-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Phenoflow/1.1.2-20200917-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PhyloPhlAn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PhyloPhlAn.md index f67f91157025..17fb25899b82 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PhyloPhlAn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PhyloPhlAn.md @@ -6,6 +6,10 @@ hide: PhyloPhlAn ========== + +PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling ofgenomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use methodfor large-scale microbial genome characterization and phylogenetic analysisat multiple levels of resolution. + +https://github.com/biobakery/phylophlan # Available modules @@ -17,8 +21,8 @@ To start using PhyloPhlAn, load one of these modules using a `module load` comma module load PhyloPhlAn/3.0.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PhyloPhlAn/3.0.3-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PhyloPhlAn/3.0.3-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow-SIMD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow-SIMD.md index 9296ae0705be..b0c30d5a7b11 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow-SIMD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow-SIMD.md @@ -6,6 +6,10 @@ hide: Pillow-SIMD =========== + +Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. + +https://github.com/uploadcare/pillow-simd # Available modules @@ -14,14 +18,16 @@ The overview below shows which Pillow-SIMD installations are available per HPC-U To start using Pillow-SIMD, load one of these modules using a `module load` command like: ```shell -module load Pillow-SIMD/9.2.0-GCCcore-11.3.0 +module load Pillow-SIMD/9.5.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Pillow-SIMD/9.2.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Pillow-SIMD/8.2.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|Pillow-SIMD/7.1.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Pillow-SIMD/6.0.x.post0-GCCcore-8.3.0|-|-|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Pillow-SIMD/9.5.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Pillow-SIMD/9.5.0-GCCcore-12.2.0|x|x|x|x|x|x| +|Pillow-SIMD/9.2.0-GCCcore-11.3.0|x|x|x|x|x|x| +|Pillow-SIMD/8.2.0-GCCcore-10.3.0|x|x|x|-|x|x| +|Pillow-SIMD/7.1.2-GCCcore-10.2.0|x|x|x|x|x|x| +|Pillow-SIMD/6.0.x.post0-GCCcore-8.3.0|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow.md index 5cfd6d237ce8..30284c2ed86e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pillow.md @@ -6,6 +6,10 @@ hide: Pillow ====== + +Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors. + +https://pillow.readthedocs.org/ # Available modules @@ -14,18 +18,20 @@ The overview below shows which Pillow installations are available per HPC-UGent To start using Pillow, load one of these modules using a `module load` command like: ```shell -module load Pillow/9.4.0-GCCcore-12.2.0 +module load Pillow/10.2.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Pillow/9.4.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Pillow/9.1.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Pillow/8.3.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Pillow/8.3.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Pillow/8.2.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Pillow/8.0.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Pillow/7.0.0-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| -|Pillow/6.2.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Pillow/10.2.0-GCCcore-13.2.0|x|x|x|x|x|x| +|Pillow/10.0.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Pillow/9.4.0-GCCcore-12.2.0|x|x|x|x|x|x| +|Pillow/9.1.1-GCCcore-11.3.0|x|x|x|x|x|x| +|Pillow/8.3.2-GCCcore-11.2.0|x|x|x|x|x|x| +|Pillow/8.3.1-GCCcore-11.2.0|x|x|x|-|x|x| +|Pillow/8.2.0-GCCcore-10.3.0|x|x|x|x|x|x| +|Pillow/8.0.1-GCCcore-10.2.0|x|x|x|x|x|x| +|Pillow/7.0.0-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| +|Pillow/6.2.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pilon.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pilon.md index 44cec837a468..c2483abc9144 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pilon.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pilon.md @@ -6,6 +6,10 @@ hide: Pilon ===== + +Pilon is an automated genome assembly improvement and variant detection tool + +https://github.com/broadinstitute/pilon # Available modules @@ -17,9 +21,9 @@ To start using Pilon, load one of these modules using a `module load` command li module load Pilon/1.23-Java-11 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Pilon/1.23-Java-11|x|x|x|-|x|x|x|x| -|Pilon/1.23-Java-1.8|-|-|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Pilon/1.23-Java-11|x|x|x|x|x|x| +|Pilon/1.23-Java-1.8|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pint.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pint.md new file mode 100644 index 000000000000..6a715e766fbe --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pint.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Pint +==== + + +Pint is a Python package to define, operate andmanipulate physical quantities: the product of a numerical value and aunit of measurement. It allows arithmetic operations between them andconversions from and to different units. + +https://github.com/hgrecco/pint +# Available modules + + +The overview below shows which Pint installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Pint, load one of these modules using a `module load` command like: + +```shell +module load Pint/0.22-GCCcore-11.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Pint/0.22-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PnetCDF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PnetCDF.md index 02c2a0107af8..c7073e78a450 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PnetCDF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PnetCDF.md @@ -6,6 +6,10 @@ hide: PnetCDF ======= + +Parallel netCDF: A Parallel I/O Library for NetCDF File Access + +https://parallel-netcdf.github.io/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which PnetCDF installations are available per HPC-UGent To start using PnetCDF, load one of these modules using a `module load` command like: ```shell -module load PnetCDF/1.12.3-gompi-2021b +module load PnetCDF/1.12.3-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PnetCDF/1.12.3-gompi-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PnetCDF/1.12.3-gompi-2022a|x|-|x|-|x|-| +|PnetCDF/1.12.3-gompi-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Porechop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Porechop.md index 4a0e7580a19f..38c4f97bdf87 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Porechop.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Porechop.md @@ -6,6 +6,10 @@ hide: Porechop ======== + +Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity + +https://github.com/rrwick/Porechop # Available modules @@ -17,8 +21,8 @@ To start using Porechop, load one of these modules using a `module load` command module load Porechop/0.2.4-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Porechop/0.2.4-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Porechop/0.2.4-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PostgreSQL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PostgreSQL.md index 41b3204b4b58..0dffb5ddcdf1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PostgreSQL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PostgreSQL.md @@ -6,6 +6,10 @@ hide: PostgreSQL ========== + +PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation. + +https://www.postgresql.org/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which PostgreSQL installations are available per HPC-UG To start using PostgreSQL, load one of these modules using a `module load` command like: ```shell -module load PostgreSQL/14.4-GCCcore-11.3.0 +module load PostgreSQL/16.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PostgreSQL/14.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|PostgreSQL/13.4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PostgreSQL/16.1-GCCcore-12.3.0|x|x|x|x|x|x| +|PostgreSQL/14.4-GCCcore-11.3.0|x|x|x|x|x|x| +|PostgreSQL/13.4-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Primer3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Primer3.md index 88a2f8d7e681..2522e71da9ef 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Primer3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Primer3.md @@ -6,6 +6,10 @@ hide: Primer3 ======= + +Primer3 is a widely used program for designing PCR primers (PCR = 'Polymerase Chain Reaction'). PCR is an essential and ubiquitous tool in genetics and molecular biology. Primer3 can also design hybridization probes and sequencing primers. + +https://primer3.org/ # Available modules @@ -17,8 +21,8 @@ To start using Primer3, load one of these modules using a `module load` command module load Primer3/2.5.0-GCC-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Primer3/2.5.0-GCC-9.3.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Primer3/2.5.0-GCC-9.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ProBiS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ProBiS.md new file mode 100644 index 000000000000..ccc86959f7ce --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ProBiS.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +ProBiS +====== + + +ProBiS algorithm aligns and superimposes complete protein surfaces,surface motifs, or protein binding sites. + +http://insilab.org/probis-algorithm +# Available modules + + +The overview below shows which ProBiS installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using ProBiS, load one of these modules using a `module load` command like: + +```shell +module load ProBiS/20230403-gompi-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ProBiS/20230403-gompi-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ProtHint.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ProtHint.md index 8b7082acb2e4..67560b44bb21 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ProtHint.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ProtHint.md @@ -6,6 +6,10 @@ hide: ProtHint ======== + +ProtHint is a pipeline for predicting and scoring hints (in the form of introns, start and stop codons) in the genome of interest by mapping and spliced aligning predicted genes to a database of reference protein sequences. + +https://github.com/gatech-genemark/ProtHint # Available modules @@ -17,11 +21,11 @@ To start using ProtHint, load one of these modules using a `module load` command module load ProtHint/2.6.0-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ProtHint/2.6.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|ProtHint/2.6.0-GCC-11.2.0|x|x|x|x|x|x|x|x| -|ProtHint/2.6.0-GCC-10.2.0|x|x|x|x|x|x|x|x| -|ProtHint/2.4.0-iccifort-2019.5.281-Python-3.7.4|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ProtHint/2.6.0-GCC-11.3.0|x|x|x|x|x|x| +|ProtHint/2.6.0-GCC-11.2.0|x|x|x|x|x|x| +|ProtHint/2.6.0-GCC-10.2.0|x|x|x|x|x|x| +|ProtHint/2.4.0-iccifort-2019.5.281-Python-3.7.4|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PsiCLASS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PsiCLASS.md index b0b49d530b69..e2d8bd4e6a21 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PsiCLASS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PsiCLASS.md @@ -6,6 +6,10 @@ hide: PsiCLASS ======== + +PsiCLASS is a reference-based transcriptome assembler for single or multiple RNA-seq samples. + +https://github.com/splicebox/PsiCLASS # Available modules @@ -17,8 +21,8 @@ To start using PsiCLASS, load one of these modules using a `module load` command module load PsiCLASS/1.0.3-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PsiCLASS/1.0.3-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PsiCLASS/1.0.3-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PuLP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PuLP.md new file mode 100644 index 000000000000..e56e3d2af26d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PuLP.md @@ -0,0 +1,29 @@ +--- +hide: + - toc +--- + +PuLP +==== + + +PuLP is an LP modeler written in Python. PuLP can generate MPS or LP files andcall GLPK, COIN-OR CLP/CBC, CPLEX, GUROBI, MOSEK, XPRESS, CHOCO, MIPCL, SCIP tosolve linear problems. + +https://github.com/coin-or/pulp +# Available modules + + +The overview below shows which PuLP installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PuLP, load one of these modules using a `module load` command like: + +```shell +module load PuLP/2.8.0-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PuLP/2.8.0-foss-2023a|x|x|x|x|x|x| +|PuLP/2.7.0-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyBerny.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyBerny.md index ccd724a8843d..8aca1300b74b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyBerny.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyBerny.md @@ -6,6 +6,10 @@ hide: PyBerny ======= + +PyBerny is an optimizer of molecular geometries with respect to the total energy,using nuclear gradient information. + +https://github.com/jhrmnn/pyberny # Available modules @@ -14,12 +18,26 @@ The overview below shows which PyBerny installations are available per HPC-UGent To start using PyBerny, load one of these modules using a `module load` command like: ```shell -module load PyBerny/0.6.3-foss-2022a +module load PyBerny/0.6.3-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyBerny/0.6.3-foss-2022b|x|x|x|x|x|x| +|PyBerny/0.6.3-foss-2022a|-|x|x|x|x|x| +|PyBerny/0.6.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### PyBerny/0.6.3-foss-2022b + +This is a list of extensions included in the module: + +pyberny-0.6.3 + +### PyBerny/0.6.3-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyBerny/0.6.3-foss-2022a|-|x|x|x|x|x|x|x| -|PyBerny/0.6.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +pyberny-0.6.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCairo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCairo.md index 91a9e8190284..3149e74a2c9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCairo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCairo.md @@ -6,6 +6,10 @@ hide: PyCairo ======= + +Python bindings for the cairo library + +https://pycairo.readthedocs.io/ # Available modules @@ -17,12 +21,12 @@ To start using PyCairo, load one of these modules using a `module load` command module load PyCairo/1.21.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyCairo/1.21.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|PyCairo/1.20.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|PyCairo/1.20.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|PyCairo/1.20.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|PyCairo/1.18.2-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyCairo/1.21.0-GCCcore-11.3.0|x|x|x|x|x|x| +|PyCairo/1.20.1-GCCcore-11.2.0|x|x|x|x|x|x| +|PyCairo/1.20.1-GCCcore-10.3.0|x|x|x|x|x|x| +|PyCairo/1.20.0-GCCcore-10.2.0|-|x|x|x|x|x| +|PyCairo/1.18.2-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCalib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCalib.md index 7895838f97d7..93ba06b701cf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCalib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCalib.md @@ -6,6 +6,10 @@ hide: PyCalib ======= + +Python library for classifier calibration + +https://github.com/classifier-calibration/PyCalib # Available modules @@ -17,9 +21,9 @@ To start using PyCalib, load one of these modules using a `module load` command module load PyCalib/20230531-gfbf-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyCalib/20230531-gfbf-2022b|x|x|x|x|x|x|x|x| -|PyCalib/0.1.0.dev0-foss-2021b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyCalib/20230531-gfbf-2022b|x|x|x|x|x|x| +|PyCalib/0.1.0.dev0-foss-2021b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCheMPS2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCheMPS2.md index 6ed0c878a21b..fb12fd9e84b8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyCheMPS2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyCheMPS2.md @@ -6,6 +6,10 @@ hide: PyCheMPS2 ========= + +PyCheMPS2 is a python interface to CheMPS2, for compilation withoutMPI. CheMPS2 is a scientific library which contains a spin-adaptedimplementation of the density matrix renormalization group (DMRG)for ab initio quantum chemistry. + +https://sebwouters.github.io/CheMPS2 # Available modules @@ -14,11 +18,25 @@ The overview below shows which PyCheMPS2 installations are available per HPC-UGe To start using PyCheMPS2, load one of these modules using a `module load` command like: ```shell -module load PyCheMPS2/1.8.12-foss-2022a +module load PyCheMPS2/1.8.12-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyCheMPS2/1.8.12-foss-2022b|x|x|x|x|x|x| +|PyCheMPS2/1.8.12-foss-2022a|-|x|x|x|x|x| + + +### PyCheMPS2/1.8.12-foss-2022b + +This is a list of extensions included in the module: + +PyCheMPS2-1.8.12 + +### PyCheMPS2/1.8.12-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyCheMPS2/1.8.12-foss-2022a|-|x|x|x|x|x|x|x| +PyCheMPS2-1.8.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyFoam.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyFoam.md index f119f6bd73cf..bb0e7a15f9b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyFoam.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyFoam.md @@ -6,6 +6,10 @@ hide: PyFoam ====== + +A Python library to control OpenFOAM-runs and manipulate OpenFOAM-data. + +http://openfoamwiki.net/index.php/Contrib/PyFoam # Available modules @@ -17,8 +21,8 @@ To start using PyFoam, load one of these modules using a `module load` command l module load PyFoam/2020.5-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyFoam/2020.5-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyFoam/2020.5-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyGEOS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyGEOS.md index fb2126767743..c45f8320859d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyGEOS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyGEOS.md @@ -6,6 +6,10 @@ hide: PyGEOS ====== + +PyGEOS is a C/Python library with vectorized geometry functions. The geometry operations are done in the open-source geometry library GEOS. PyGEOS wraps these operations in NumPy ufuncs providing a performance improvement when operating on arrays of geometries. + +https://pygeos.readthedocs.io # Available modules @@ -17,8 +21,8 @@ To start using PyGEOS, load one of these modules using a `module load` command l module load PyGEOS/0.8-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyGEOS/0.8-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyGEOS/0.8-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyGObject.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyGObject.md index c5f6e1254675..ddd6da65f33f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyGObject.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyGObject.md @@ -6,6 +6,10 @@ hide: PyGObject ========= + +PyGObject is a Python package which provides bindings for GObject basedlibraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more. + +https://pygobject.readthedocs.io/ # Available modules @@ -17,8 +21,8 @@ To start using PyGObject, load one of these modules using a `module load` comman module load PyGObject/3.42.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyGObject/3.42.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyGObject/3.42.1-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyInstaller.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyInstaller.md new file mode 100644 index 000000000000..e84c547b2059 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyInstaller.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +PyInstaller +=========== + + +PyInstaller bundles a Python application and all its dependencies into a single package. The user can run the packaged app without installing a Python interpreter or any modules. + +https://pyinstaller.org/en/stable/ +# Available modules + + +The overview below shows which PyInstaller installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PyInstaller, load one of these modules using a `module load` command like: + +```shell +module load PyInstaller/6.3.0-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyInstaller/6.3.0-GCCcore-12.3.0|x|x|x|x|x|x| + + +### PyInstaller/6.3.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +altgraph-0.17.4, packaging-23.2, PyInstaller-6.3.0, pyinstaller-hooks-contrib-2023.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyKeOps.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyKeOps.md index f17aa450ffad..5b07f905aaf9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyKeOps.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyKeOps.md @@ -6,6 +6,10 @@ hide: PyKeOps ======= + +PyKeOps contains the python bindings (numpy and pytorch) for the cpp/cuda library KeOps. + +https://www.kernel-operations.io/keops/python # Available modules @@ -17,8 +21,15 @@ To start using PyKeOps, load one of these modules using a `module load` command module load PyKeOps/2.0-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyKeOps/2.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### PyKeOps/2.0-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyKeOps/2.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| +dill-0.3.5.1, keopscore-2.0, multiprocess-0.70.13, pykeops-2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC.md new file mode 100644 index 000000000000..cbe5ca553892 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +PyMC +==== + + +PyMC is a probabilistic programming library for Python that allows users to build Bayesian models with a simple Python API and fit them using Markov chain Monte Carlo (MCMC) methods. + +https://www.pymc.io +# Available modules + + +The overview below shows which PyMC installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PyMC, load one of these modules using a `module load` command like: + +```shell +module load PyMC/5.9.0-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyMC/5.9.0-foss-2023a|x|x|x|x|x|x| + + +### PyMC/5.9.0-foss-2023a + +This is a list of extensions included in the module: + +cachetools-5.3.1, fastprogress-1.0.3, pymc-5.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC3.md index 31980b50d0b8..1d188f9f1f27 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMC3.md @@ -6,6 +6,10 @@ hide: PyMC3 ===== + +Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano + +https://docs.pymc.io/ # Available modules @@ -17,12 +21,43 @@ To start using PyMC3, load one of these modules using a `module load` command li module load PyMC3/3.11.1-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyMC3/3.11.1-intel-2021b|x|x|x|-|x|x| +|PyMC3/3.11.1-intel-2020b|-|-|x|-|x|x| +|PyMC3/3.11.1-fosscuda-2020b|-|-|-|-|x|-| +|PyMC3/3.8-intel-2019b-Python-3.7.4|-|-|x|-|x|x| +|PyMC3/3.8-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### PyMC3/3.11.1-intel-2021b + +This is a list of extensions included in the module: + +fastprogress-1.0.0, patsy-0.5.2, pymc3-3.11.1 + +### PyMC3/3.11.1-intel-2020b + +This is a list of extensions included in the module: + +arviz-0.11.1, dill-0.3.3, fastprogress-1.0.0, patsy-0.5.1, pymc3-3.11.1, typing_extensions-3.7.4.3 + +### PyMC3/3.11.1-fosscuda-2020b + +This is a list of extensions included in the module: + +arviz-0.11.1, dill-0.3.3, fastprogress-1.0.0, patsy-0.5.1, pymc3-3.11.1, typing_extensions-3.7.4.3 + +### PyMC3/3.8-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +arviz-0.7.0, patsy-0.5.1, pymc3-3.8, xarray-0.15.1 + +### PyMC3/3.8-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyMC3/3.11.1-intel-2021b|x|x|x|-|x|x|x|x| -|PyMC3/3.11.1-intel-2020b|-|-|x|-|x|x|x|x| -|PyMC3/3.11.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|PyMC3/3.8-intel-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| -|PyMC3/3.8-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +arviz-0.7.0, patsy-0.5.1, pymc3-3.8, xarray-0.15.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMDE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMDE.md new file mode 100644 index 000000000000..81664299f3ba --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMDE.md @@ -0,0 +1,42 @@ +--- +hide: + - toc +--- + +PyMDE +===== + + +PyMDE is a Python library for computing vector embeddings of items, such as images, biological cells,nodes in a network, or any other type of abstract object. + +https://pymde.org +# Available modules + + +The overview below shows which PyMDE installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PyMDE, load one of these modules using a `module load` command like: + +```shell +module load PyMDE/0.1.18-foss-2022a-CUDA-11.7.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyMDE/0.1.18-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|PyMDE/0.1.18-foss-2022a|x|x|x|x|x|x| + + +### PyMDE/0.1.18-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +pymde-0.1.18, pynndescent-0.5.11 + +### PyMDE/0.1.18-foss-2022a + +This is a list of extensions included in the module: + +pymde-0.1.18, pynndescent-0.5.11 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMOL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMOL.md index 70c03382ace7..71e55a7b4042 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyMOL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyMOL.md @@ -6,6 +6,10 @@ hide: PyMOL ===== + +PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories.It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone! + +https://github.com/schrodinger/pymol-open-source # Available modules @@ -17,8 +21,15 @@ To start using PyMOL, load one of these modules using a `module load` command li module load PyMOL/2.5.0-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyMOL/2.5.0-foss-2020b|x|x|x|x|x|x| + + +### PyMOL/2.5.0-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyMOL/2.5.0-foss-2020b|x|x|x|x|x|x|x|x| +Pmw-2.0.1, PyMOL-2.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOD.md index 5fb92e084d60..93496458d5a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOD.md @@ -6,6 +6,10 @@ hide: PyOD ==== + +PyOD is a comprehensive and scalable Python toolkit for detecting outlying objects in multivariate data. + +https://pyod.readthedocs.io # Available modules @@ -17,9 +21,9 @@ To start using PyOD, load one of these modules using a `module load` command lik module load PyOD/0.8.7-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyOD/0.8.7-intel-2020b|-|x|x|-|x|x|x|x| -|PyOD/0.8.7-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyOD/0.8.7-intel-2020b|-|x|x|-|x|x| +|PyOD/0.8.7-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenCL.md index ed9ebd323c89..a0f10538215f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenCL.md @@ -6,6 +6,10 @@ hide: PyOpenCL ======== + +PyOpenCL lets you access GPUs and other massively parallel compute devices from Python. + +https://mathema.tician.de/software/pyopencl/ # Available modules @@ -14,12 +18,46 @@ The overview below shows which PyOpenCL installations are available per HPC-UGen To start using PyOpenCL, load one of these modules using a `module load` command like: ```shell -module load PyOpenCL/2021.2.13-foss-2021b-CUDA-11.4.1 +module load PyOpenCL/2023.1.4-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyOpenCL/2023.1.4-foss-2023a|x|x|x|x|x|x| +|PyOpenCL/2023.1.4-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|PyOpenCL/2023.1.4-foss-2022a|x|x|x|x|x|x| +|PyOpenCL/2021.2.13-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-| +|PyOpenCL/2021.1.2-foss-2020b|-|x|x|x|x|x| + + +### PyOpenCL/2023.1.4-foss-2023a + +This is a list of extensions included in the module: + +pyopencl-2023.1.4, pytools-2023.1.1 + +### PyOpenCL/2023.1.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +appdirs-1.4.4, pyopencl-2023.1.4, pytools-2023.1.1 + +### PyOpenCL/2023.1.4-foss-2022a + +This is a list of extensions included in the module: + +appdirs-1.4.4, pyopencl-2023.1.4, pytools-2023.1.1 + +### PyOpenCL/2021.2.13-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +appdirs-1.4.4, pyopencl-2021.2.13, pytools-2021.2.9 + +### PyOpenCL/2021.1.2-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyOpenCL/2021.2.13-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-|-|-| -|PyOpenCL/2021.1.2-foss-2020b|-|x|x|x|x|x|x|x| +appdirs-1.4.4, pyopencl-2021.1.2, pytools-2021.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenGL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenGL.md index b7957436e9e8..5c3b42a53ffc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenGL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyOpenGL.md @@ -6,6 +6,10 @@ hide: PyOpenGL ======== + +PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs. + +http://pyopengl.sourceforge.net # Available modules @@ -17,12 +21,25 @@ To start using PyOpenGL, load one of these modules using a `module load` command module load PyOpenGL/3.1.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyOpenGL/3.1.7-GCCcore-12.3.0|x|x|x|x|x|x| +|PyOpenGL/3.1.6-GCCcore-11.3.0|x|x|x|x|x|x| +|PyOpenGL/3.1.6-GCCcore-11.2.0|x|x|x|-|x|x| +|PyOpenGL/3.1.5-GCCcore-10.3.0|-|x|x|-|x|x| +|PyOpenGL/3.1.5-GCCcore-10.2.0|-|x|x|x|x|x| + + +### PyOpenGL/3.1.7-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +PyOpenGL-3.1.7 + +### PyOpenGL/3.1.6-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyOpenGL/3.1.7-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|PyOpenGL/3.1.6-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|PyOpenGL/3.1.6-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|PyOpenGL/3.1.5-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|PyOpenGL/3.1.5-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +PyOpenGL-3.1.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyPy.md new file mode 100644 index 000000000000..90bf0a8c5aff --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyPy.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +PyPy +==== + + +A fast, compliant alternative implementation of Python + +https://www.pypy.org +# Available modules + + +The overview below shows which PyPy installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PyPy, load one of these modules using a `module load` command like: + +```shell +module load PyPy/7.3.12-3.10 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyPy/7.3.12-3.10|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyQt5.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyQt5.md index 45209b7f0954..8248a836c52f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyQt5.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyQt5.md @@ -6,6 +6,10 @@ hide: PyQt5 ===== + +PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company.This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework. + +https://www.riverbankcomputing.com/software/pyqt # Available modules @@ -14,15 +18,16 @@ The overview below shows which PyQt5 installations are available per HPC-UGent T To start using PyQt5, load one of these modules using a `module load` command like: ```shell -module load PyQt5/5.15.5-GCCcore-11.3.0 +module load PyQt5/5.15.7-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyQt5/5.15.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|PyQt5/5.15.4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|PyQt5/5.15.4-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|PyQt5/5.15.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|PyQt5/5.15.1-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyQt5/5.15.7-GCCcore-12.2.0|x|x|x|x|x|x| +|PyQt5/5.15.5-GCCcore-11.3.0|x|x|x|x|x|x| +|PyQt5/5.15.4-GCCcore-11.2.0|x|x|x|x|x|x| +|PyQt5/5.15.4-GCCcore-10.3.0|-|x|x|-|x|x| +|PyQt5/5.15.1-GCCcore-10.2.0|x|x|x|x|x|x| +|PyQt5/5.15.1-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyQtGraph.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyQtGraph.md index 825b5aca8ec2..75e2d7568df4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyQtGraph.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyQtGraph.md @@ -6,6 +6,10 @@ hide: PyQtGraph ========= + +PyQtGraph is a pure-python graphics and GUI library built on PyQt5/PySide2 and numpy. + +http://www.pyqtgraph.org/ # Available modules @@ -17,9 +21,9 @@ To start using PyQtGraph, load one of these modules using a `module load` comman module load PyQtGraph/0.13.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyQtGraph/0.13.3-foss-2022a|x|x|x|x|x|x|x|x| -|PyQtGraph/0.12.3-foss-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyQtGraph/0.13.3-foss-2022a|x|x|x|x|x|x| +|PyQtGraph/0.12.3-foss-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyRETIS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyRETIS.md index ef8aaf3f7ec2..4f6335255e93 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyRETIS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyRETIS.md @@ -6,6 +6,10 @@ hide: PyRETIS ======= + +PyRETIS is a Python library for rare event molecular simulations with emphasis on methods based on transition interface sampling and replica exchange transition interface sampling. + +http://www.pyretis.org # Available modules @@ -17,10 +21,29 @@ To start using PyRETIS, load one of these modules using a `module load` command module load PyRETIS/2.5.0-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyRETIS/2.5.0-intel-2020b|-|x|x|-|x|x| +|PyRETIS/2.5.0-intel-2020a-Python-3.8.2|-|-|x|-|x|x| +|PyRETIS/2.5.0-foss-2020b|-|x|x|x|x|x| + + +### PyRETIS/2.5.0-intel-2020b + +This is a list of extensions included in the module: + +colorama-0.4.4, PyRETIS-2.5.0 + +### PyRETIS/2.5.0-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, PyRETIS-2.5.0, sphinx-bootstrap-theme-0.7.1 + +### PyRETIS/2.5.0-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyRETIS/2.5.0-intel-2020b|-|x|x|-|x|x|-|x| -|PyRETIS/2.5.0-intel-2020a-Python-3.8.2|-|-|x|-|x|x|x|x| -|PyRETIS/2.5.0-foss-2020b|-|x|x|x|x|x|-|x| +colorama-0.4.4, PyRETIS-2.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyRe.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyRe.md index b691e094a635..1f921d16e6e3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyRe.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyRe.md @@ -6,6 +6,10 @@ hide: PyRe ==== + +PyRe (Python Reliability) is a Python module for structural reliability analysis. + +https://hackl.science/pyre # Available modules @@ -17,9 +21,9 @@ To start using PyRe, load one of these modules using a `module load` command lik module load PyRe/5.0.3-20190221-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyRe/5.0.3-20190221-intel-2019b-Python-3.7.4|-|x|-|-|-|x|-|x| -|PyRe/5.0.3-20190221-foss-2019b-Python-3.7.4|-|x|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyRe/5.0.3-20190221-intel-2019b-Python-3.7.4|-|x|-|-|-|x| +|PyRe/5.0.3-20190221-foss-2019b-Python-3.7.4|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PySCF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PySCF.md index 9f3c7f71f8ef..3d33ca817aea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PySCF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PySCF.md @@ -6,6 +6,10 @@ hide: PySCF ===== + +PySCF is an open-source collection of electronic structure modules powered by Python. + +http://www.pyscf.org # Available modules @@ -14,13 +18,27 @@ The overview below shows which PySCF installations are available per HPC-UGent T To start using PySCF, load one of these modules using a `module load` command like: ```shell -module load PySCF/2.1.1-foss-2022a +module load PySCF/2.4.0-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PySCF/2.4.0-foss-2022b|x|x|x|x|x|x| +|PySCF/2.1.1-foss-2022a|-|x|x|x|x|x| +|PySCF/1.7.6-gomkl-2021a|x|x|x|-|x|x| +|PySCF/1.7.6-foss-2021a|x|x|x|-|x|x| + + +### PySCF/2.4.0-foss-2022b + +This is a list of extensions included in the module: + +dftd3-94091d8, dmrgscf-4ff57bf, doci-08079a9, fciqmc-ee98fb4, icmpspt-f26062b, mbd-485c18c, MCfun-0.2.2, naive-hci-0c28d6e, properties-8b94d8d, pyqmc-0.6.0, qsdopt-3ad2c02, semiempirical-470d716, shciscf-e8985e7, tblis-0d4dfd2, zquatev-4eb41b1 + +### PySCF/2.1.1-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PySCF/2.1.1-foss-2022a|-|x|x|x|x|x|x|x| -|PySCF/1.7.6-gomkl-2021a|x|x|x|-|x|x|x|x| -|PySCF/1.7.6-foss-2021a|x|x|x|-|x|x|x|x| +dftd3-d214021, dmrgscf-4ff57bf, doci-08079a9, fciqmc-c7c30bb, icmpspt-f26062b, mbd-485c18c, MCfun-1a9ae31, naive-hci-0c28d6e, properties-92a4df7, pyqmc-0.5.0, qsdopt-3ad2c02, semiempirical-327d65e, shciscf-dd398d2, tblis-a1efbc0, zquatev-4eb41b1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyStan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyStan.md index 3aa6afa25ce5..211f922b999c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyStan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyStan.md @@ -6,6 +6,10 @@ hide: PyStan ====== + +Python interface to Stan, a package for Bayesian inference using the No-U-Turn sampler, a variant of Hamiltonian Monte Carlo. + +https://github.com/stan-dev/pystan # Available modules @@ -17,8 +21,8 @@ To start using PyStan, load one of these modules using a `module load` command l module load PyStan/2.19.1.1-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyStan/2.19.1.1-intel-2020b|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyStan/2.19.1.1-intel-2020b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTables.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTables.md index b08aff86f5fa..898d7120c540 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTables.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTables.md @@ -6,6 +6,10 @@ hide: PyTables ======== + +PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browse, process and search very large amounts of data. One important feature of PyTables is that it optimizes memory and disk resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as relational or object oriented databases. + +https://www.pytables.org # Available modules @@ -17,17 +21,24 @@ To start using PyTables, load one of these modules using a `module load` command module load PyTables/3.8.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyTables/3.8.0-foss-2022a|x|x|x|x|x|x|x|x| -|PyTables/3.6.1-intel-2020b|-|x|x|-|x|x|x|x| -|PyTables/3.6.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|PyTables/3.6.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|PyTables/3.6.1-foss-2021b|x|x|x|x|x|x|x|x| -|PyTables/3.6.1-foss-2021a|x|x|x|x|x|x|x|x| -|PyTables/3.6.1-foss-2020b|-|x|x|x|x|x|x|x| -|PyTables/3.6.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|PyTables/3.6.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|PyTables/3.5.2-intel-2019b-Python-2.7.16|-|x|-|-|-|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyTables/3.8.0-foss-2022a|x|x|x|x|x|x| +|PyTables/3.6.1-intel-2020b|-|x|x|-|x|x| +|PyTables/3.6.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|PyTables/3.6.1-fosscuda-2020b|-|-|-|-|x|-| +|PyTables/3.6.1-foss-2021b|x|x|x|x|x|x| +|PyTables/3.6.1-foss-2021a|x|x|x|x|x|x| +|PyTables/3.6.1-foss-2020b|-|x|x|x|x|x| +|PyTables/3.6.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|PyTables/3.6.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|PyTables/3.5.2-intel-2019b-Python-2.7.16|-|x|-|-|-|x| + + +### PyTables/3.8.0-foss-2022a + +This is a list of extensions included in the module: + +blosc2-2.0.0, tables-3.8.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTensor.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTensor.md new file mode 100644 index 000000000000..8ae67735b33c --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTensor.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +PyTensor +======== + + +Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs + +https://github.com/pymc-devs/pytensor +# Available modules + + +The overview below shows which PyTensor installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PyTensor, load one of these modules using a `module load` command like: + +```shell +module load PyTensor/2.17.1-gfbf-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyTensor/2.17.1-gfbf-2023a|x|x|x|x|x|x| + + +### PyTensor/2.17.1-gfbf-2023a + +This is a list of extensions included in the module: + +cons-0.4.6, etuples-0.3.9, logical-unification-0.4.6, miniKanren-1.0.3, multipledispatch-1.0.0, PyTensor-2.17.1, toolz-0.12.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Geometric.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Geometric.md index 7313bcd65437..e98337345352 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Geometric.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Geometric.md @@ -6,6 +6,10 @@ hide: PyTorch-Geometric ================= + +PyTorch Geometric (PyG) is a geometric deep learning extension library for PyTorch. + +https://github.com/rusty1s/pytorch_geometric # Available modules @@ -17,12 +21,43 @@ To start using PyTorch-Geometric, load one of these modules using a `module load module load PyTorch-Geometric/1.7.0-fosscuda-2020b-numba-0.53.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyTorch-Geometric/1.7.0-fosscuda-2020b-numba-0.53.1|-|-|-|-|x|-| +|PyTorch-Geometric/1.7.0-foss-2020b-numba-0.53.1|-|x|x|-|x|x| +|PyTorch-Geometric/1.6.3-fosscuda-2020b|-|-|-|-|x|-| +|PyTorch-Geometric/1.4.2-foss-2019b-Python-3.7.4-PyTorch-1.4.0|-|x|x|-|x|x| +|PyTorch-Geometric/1.3.2-foss-2019b-Python-3.7.4|-|x|-|-|-|x| + + +### PyTorch-Geometric/1.7.0-fosscuda-2020b-numba-0.53.1 + +This is a list of extensions included in the module: + +googledrivedownloader-0.4, plyfile-0.7.4, python-louvain-0.15, torch_cluster-1.5.9, torch_geometric-1.7.0, torch_scatter-2.0.7, torch_sparse-0.6.9, torch_spline_conv-1.2.1 + +### PyTorch-Geometric/1.7.0-foss-2020b-numba-0.53.1 + +This is a list of extensions included in the module: + +googledrivedownloader-0.4, plyfile-0.7.4, python-louvain-0.15, torch_cluster-1.5.9, torch_geometric-1.7.0, torch_scatter-2.0.7, torch_sparse-0.6.9, torch_spline_conv-1.2.1 + +### PyTorch-Geometric/1.6.3-fosscuda-2020b + +This is a list of extensions included in the module: + +googledrivedownloader-0.4, plyfile-0.7.3, python-louvain-0.15, torch_cluster-1.5.8, torch_geometric-1.6.3, torch_scatter-2.0.5, torch_sparse-0.6.8, torch_spline_conv-1.2.1 + +### PyTorch-Geometric/1.4.2-foss-2019b-Python-3.7.4-PyTorch-1.4.0 + +This is a list of extensions included in the module: + +googledrivedownloader-0.4, plyfile-0.7.1, torch_cluster-1.4.5, torch_geometric-1.4.2, torch_scatter-2.0.4, torch_sparse-0.6.0, torch_spline_conv-1.2.0 + +### PyTorch-Geometric/1.3.2-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyTorch-Geometric/1.7.0-fosscuda-2020b-numba-0.53.1|-|-|-|-|x|-|-|-| -|PyTorch-Geometric/1.7.0-foss-2020b-numba-0.53.1|-|x|x|-|x|x|x|x| -|PyTorch-Geometric/1.6.3-fosscuda-2020b|-|-|-|-|x|-|-|-| -|PyTorch-Geometric/1.4.2-foss-2019b-Python-3.7.4-PyTorch-1.4.0|-|x|x|-|x|x|-|x| -|PyTorch-Geometric/1.3.2-foss-2019b-Python-3.7.4|-|x|-|-|-|x|-|x| +googledrivedownloader-0.4, plyfile-0.7.1, torch_cluster-1.4.5, torch_geometric-1.3.2, torch_scatter-1.4.0, torch_sparse-0.4.3, torch_spline_conv-1.1.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Ignite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Ignite.md new file mode 100644 index 000000000000..6cf7312c34f1 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Ignite.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +PyTorch-Ignite +============== + + +Ignite is a high-level library to help with training and evaluating neuralnetworks in PyTorch flexibly and transparently. + +https://pytorch-ignite.ai/ +# Available modules + + +The overview below shows which PyTorch-Ignite installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PyTorch-Ignite, load one of these modules using a `module load` command like: + +```shell +module load PyTorch-Ignite/0.4.12-foss-2022a-CUDA-11.7.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyTorch-Ignite/0.4.12-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| + + +### PyTorch-Ignite/0.4.12-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +pytorch-ignite-0.4.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Lightning.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Lightning.md index 64ce1cec0c42..f0af4849b3d2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Lightning.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch-Lightning.md @@ -6,6 +6,10 @@ hide: PyTorch-Lightning ================= + +PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers. + +https://pytorchlightning.ai # Available modules @@ -14,14 +18,60 @@ The overview below shows which PyTorch-Lightning installations are available per To start using PyTorch-Lightning, load one of these modules using a `module load` command like: ```shell -module load PyTorch-Lightning/1.8.4-foss-2022a-CUDA-11.7.0 +module load PyTorch-Lightning/2.1.3-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyTorch-Lightning/2.1.3-foss-2023a|x|x|x|x|x|x| +|PyTorch-Lightning/2.1.2-foss-2022b|x|x|x|x|x|x| +|PyTorch-Lightning/1.8.4-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|PyTorch-Lightning/1.8.4-foss-2022a|x|x|x|x|x|x| +|PyTorch-Lightning/1.7.7-foss-2022a-CUDA-11.7.0|-|-|x|-|-|-| +|PyTorch-Lightning/1.5.9-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|PyTorch-Lightning/1.5.9-foss-2021a|x|x|x|x|x|x| + + +### PyTorch-Lightning/2.1.3-foss-2023a + +This is a list of extensions included in the module: + +aiobotocore-2.9.1, aioitertools-0.11.0, anyio-4.2.0, arrow-1.3.0, blessed-1.20.0, boto3-1.33.13, botocore-1.33.13, commonmark-0.9.1, croniter-2.0.1, editor-1.6.5, exceptiongroup-1.2.0, fastapi-0.109.0, fsspec-2023.12.2, h11-0.14.0, inquirer-3.2.1, itsdangerous-2.1.2, jmespath-1.0.1, lightning-utilities-0.10.1, lightning_cloud-0.5.61, markdown-it-py-3.0.0, mdurl-0.1.2, PyJWT-2.8.0, python-editor-1.0.4, python_multipart-0.0.6, pytorch-lightning-2.1.3, readchar-4.0.5, rich-13.7.0, runs-1.2.0, s3fs-2023.12.2, s3transfer-0.8.2, sniffio-1.3.0, starlette-0.35.1, starsessions-2.1.2, torchmetrics-1.3.0.post0, traitlets-5.14.1, types-python-dateutil-2.8.19.20240106, uvicorn-0.26.0, websocket-client-1.7.0, wrapt-1.16.0, xmod-1.8.1 + +### PyTorch-Lightning/2.1.2-foss-2022b + +This is a list of extensions included in the module: + +aiobotocore-2.9.0, aioitertools-0.11.0, anyio-4.2.0, arrow-1.3.0, blessed-1.20.0, commonmark-0.9.1, croniter-2.0.1, editor-1.6.3, exceptiongroup-1.2.0, fastapi-0.108.0, fsspec-2023.12.2, h11-0.14.0, inquirer-3.2.0, itsdangerous-2.1.2, lightning-utilities-0.10.0, lightning_cloud-0.5.57, markdown-it-py-3.0.0, mdurl-0.1.2, PyJWT-2.8.0, python-editor-1.0.4, python_multipart-0.0.6, pytorch-lightning-2.1.2, readchar-4.0.5, rich-13.7.0, runs-1.2.0, s3fs-2023.12.2, sniffio-1.3.0, starlette-0.32.0.post1, starsessions-2.1.3, torchmetrics-1.2.1, traitlets-5.14.1, types-python-dateutil-2.8.19.14, uvicorn-0.25.0, websocket-client-1.7.0, wrapt-1.16.0, xmod-1.8.1 + +### PyTorch-Lightning/1.8.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +aiobotocore-2.3.4, aioitertools-0.11.0, anyio-3.6.1, arrow-1.2.3, blessed-1.19.1, botocore-1.24.21, commonmark-0.9.1, croniter-1.3.8, fastapi-0.79.1, fsspec-2022.7.1, inquirer-2.10.1, itsdangerous-2.1.2, jmespath-1.0.1, lightning-utilities-0.4.2, lightning_cloud-0.5.12, pydantic-1.10.2, PyJWT-2.6.0, python-editor-1.0.4, pytorch-lightning-1.8.4, readchar-4.0.3, rich-12.5.1, s3fs-2022.7.1, sniffio-1.3.0, starlette-0.19.1, starsessions-1.3.0, torchmetrics-0.9.3, traitlets-5.2.0, websocket-client-1.4.2, wrapt-1.14.1 + +### PyTorch-Lightning/1.8.4-foss-2022a + +This is a list of extensions included in the module: + +aiobotocore-2.3.4, aioitertools-0.11.0, anyio-3.6.1, arrow-1.2.3, blessed-1.19.1, botocore-1.24.21, commonmark-0.9.1, croniter-1.3.8, fastapi-0.79.1, fsspec-2022.7.1, inquirer-2.10.1, itsdangerous-2.1.2, jmespath-1.0.1, lightning-utilities-0.4.2, lightning_cloud-0.5.12, pydantic-1.10.2, PyJWT-2.6.0, python-editor-1.0.4, pytorch-lightning-1.8.4, readchar-4.0.3, rich-12.5.1, s3fs-2022.7.1, sniffio-1.3.0, starlette-0.19.1, starsessions-1.3.0, torchmetrics-0.9.3, traitlets-5.2.0, websocket-client-1.4.2, wrapt-1.14.1 + +### PyTorch-Lightning/1.7.7-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +fsspec-2022.8.2, pyDeprecate-0.3.2, pytorch-lightning-1.7.7, torchmetrics-0.9.3 + +### PyTorch-Lightning/1.5.9-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +fsspec-2022.1.0, pyDeprecate-0.3.2, pytorch-lightning-1.5.9, torchmetrics-0.7.0 + +### PyTorch-Lightning/1.5.9-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyTorch-Lightning/1.8.4-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|PyTorch-Lightning/1.8.4-foss-2022a|x|x|x|x|x|x|x|x| -|PyTorch-Lightning/1.5.9-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|PyTorch-Lightning/1.5.9-foss-2021a|x|x|x|x|x|x|x|x| +fsspec-2022.1.0, pyDeprecate-0.3.2, pytorch-lightning-1.5.9, torchmetrics-0.7.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch.md index e760e8dcc933..3be39adec246 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyTorch.md @@ -6,6 +6,10 @@ hide: PyTorch ======= + +Tensors and Dynamic neural networks in Python with strong GPU acceleration.PyTorch is a deep learning framework that puts Python first. + +https://pytorch.org/ # Available modules @@ -14,26 +18,30 @@ The overview below shows which PyTorch installations are available per HPC-UGent To start using PyTorch, load one of these modules using a `module load` command like: ```shell -module load PyTorch/1.12.1-foss-2022a-CUDA-11.7.0 +module load PyTorch/2.1.2-foss-2023a-CUDA-12.1.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyTorch/1.12.1-foss-2022a-CUDA-11.7.0|-|-|x|-|x|-|-|-| -|PyTorch/1.12.1-foss-2022a|x|x|x|x|-|x|x|x| -|PyTorch/1.12.1-foss-2021b|-|x|x|x|x|x|x|x| -|PyTorch/1.12.0-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-|-|-| -|PyTorch/1.12.0-foss-2022a|x|x|x|x|x|x|x|x| -|PyTorch/1.11.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|PyTorch/1.10.0-fosscuda-2020b|x|-|-|-|-|-|-|-| -|PyTorch/1.10.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|PyTorch/1.10.0-foss-2021a|x|x|x|x|x|x|x|x| -|PyTorch/1.9.0-fosscuda-2020b|x|-|-|-|-|-|-|-| -|PyTorch/1.8.1-fosscuda-2020b|x|-|-|-|-|-|-|-| -|PyTorch/1.7.1-fosscuda-2020b|x|-|-|-|x|-|-|-| -|PyTorch/1.7.1-foss-2020b|-|x|x|x|x|x|x|x| -|PyTorch/1.6.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|PyTorch/1.4.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|PyTorch/1.3.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyTorch/2.1.2-foss-2023a-CUDA-12.1.1|x|-|x|-|x|-| +|PyTorch/2.1.2-foss-2023a|x|x|x|x|x|x| +|PyTorch/1.13.1-foss-2022b|x|x|x|x|x|x| +|PyTorch/1.13.1-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|PyTorch/1.12.1-foss-2022a-CUDA-11.7.0|-|-|x|-|x|-| +|PyTorch/1.12.1-foss-2022a|x|x|x|x|-|x| +|PyTorch/1.12.1-foss-2021b|-|x|x|x|x|x| +|PyTorch/1.12.0-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|PyTorch/1.12.0-foss-2022a|x|x|x|x|x|x| +|PyTorch/1.11.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|PyTorch/1.10.0-fosscuda-2020b|x|-|-|-|-|-| +|PyTorch/1.10.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|PyTorch/1.10.0-foss-2021a|x|x|x|x|x|x| +|PyTorch/1.9.0-fosscuda-2020b|x|-|-|-|-|-| +|PyTorch/1.8.1-fosscuda-2020b|x|-|-|-|-|-| +|PyTorch/1.7.1-fosscuda-2020b|x|-|-|-|x|-| +|PyTorch/1.7.1-foss-2020b|-|x|x|x|x|x| +|PyTorch/1.6.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|PyTorch/1.4.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|PyTorch/1.3.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF.md index 72a2bbb01a74..26f98878673c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF.md @@ -6,6 +6,10 @@ hide: PyVCF ===== + +A Variant Call Format reader for Python. + +https://github.com/jamescasbon/PyVCF # Available modules @@ -17,9 +21,9 @@ To start using PyVCF, load one of these modules using a `module load` command li module load PyVCF/0.6.8-GCC-8.3.0-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyVCF/0.6.8-GCC-8.3.0-Python-2.7.16|-|-|x|-|x|-|-|-| -|PyVCF/0.6.8-GCC-8.3.0|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyVCF/0.6.8-GCC-8.3.0-Python-2.7.16|-|-|x|-|x|-| +|PyVCF/0.6.8-GCC-8.3.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF3.md index d783056be36e..8809851a6035 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyVCF3.md @@ -6,6 +6,10 @@ hide: PyVCF3 ====== + +A VCFv4.0 and 4.1 parser for Python. The intent of this module is to mimic thecsv module in the Python stdlib, as opposed to more flexible serializationformats like JSON or YAML. vcf will attempt to parse the content of each recordbased on the data types specified in the meta-information lines -- specificallythe ##INFO and ##FORMAT lines. If these lines are missing or incomplete, itwill check against the reserved types mentioned in the spec. Failing that, itwill just return strings.PyVCF3 has been created because the Official PyVCF repository is no longermaintained and do not accept any pull requests. This fork is for python 3 onlyand has been published on pyPI as PyVCF3. + +https://github.com/dridk/PyVCF3 # Available modules @@ -17,8 +21,15 @@ To start using PyVCF3, load one of these modules using a `module load` command l module load PyVCF3/1.0.3-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyVCF3/1.0.3-GCCcore-11.3.0|x|x|x|x|x|x| + + +### PyVCF3/1.0.3-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyVCF3/1.0.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +PyVCF3-1.0.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyWBGT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyWBGT.md index cc76d2a54cc6..6f57957acf02 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyWBGT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyWBGT.md @@ -6,6 +6,10 @@ hide: PyWBGT ====== + +Cython source code for estimating wet bulb globe temperature (WBGT) from datasets of standardmeterological measurements using models developed by Liljegren et al (2008) + +https://github.com/QINQINKONG/PyWBGT # Available modules @@ -17,9 +21,22 @@ To start using PyWBGT, load one of these modules using a `module load` command l module load PyWBGT/1.0.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyWBGT/1.0.0-foss-2022a|x|x|x|x|x|x| +|PyWBGT/1.0.0-foss-2021b|x|x|x|x|x|x| + + +### PyWBGT/1.0.0-foss-2022a + +This is a list of extensions included in the module: + +cftime-1.6.2, coszenith-1.0.0, WBGT-1.0.0 + +### PyWBGT/1.0.0-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyWBGT/1.0.0-foss-2022a|x|x|x|x|x|x|x|x| -|PyWBGT/1.0.0-foss-2021b|x|x|x|x|x|x|x|x| +cftime-1.6.2, coszenith-1.0.0, WBGT-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyWavelets.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyWavelets.md index 546d7b26181e..fe3431bba805 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyWavelets.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyWavelets.md @@ -6,6 +6,10 @@ hide: PyWavelets ========== + +PyWavelets is open source wavelet transform software for Python. + +https://pywavelets.readthedocs.io # Available modules @@ -17,8 +21,8 @@ To start using PyWavelets, load one of these modules using a `module load` comma module load PyWavelets/1.1.1-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyWavelets/1.1.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyWavelets/1.1.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyYAML.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyYAML.md index a2f60afe3dfa..06730d5a0c97 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/PyYAML.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyYAML.md @@ -6,6 +6,10 @@ hide: PyYAML ====== + +PyYAML is a YAML parser and emitter for the Python programming language. + +https://github.com/yaml/pyyaml # Available modules @@ -14,17 +18,19 @@ The overview below shows which PyYAML installations are available per HPC-UGent To start using PyYAML, load one of these modules using a `module load` command like: ```shell -module load PyYAML/6.0-GCCcore-12.2.0 +module load PyYAML/6.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|PyYAML/6.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|PyYAML/6.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|PyYAML/5.4.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|PyYAML/5.4.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|PyYAML/5.3.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|PyYAML/5.3-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|PyYAML/5.1.2-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyYAML/6.0-GCCcore-12.3.0|x|x|x|x|x|x| +|PyYAML/6.0-GCCcore-12.2.0|x|x|x|x|x|x| +|PyYAML/6.0-GCCcore-11.3.0|x|x|x|x|x|x| +|PyYAML/5.4.1-GCCcore-11.2.0-Python-2.7.18|x|x|x|x|x|x| +|PyYAML/5.4.1-GCCcore-11.2.0|x|x|x|x|x|x| +|PyYAML/5.4.1-GCCcore-10.3.0|x|x|x|x|x|x| +|PyYAML/5.3.1-GCCcore-10.2.0|x|x|x|x|x|x| +|PyYAML/5.3-GCCcore-9.3.0|x|x|x|x|x|x| +|PyYAML/5.1.2-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PyZMQ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PyZMQ.md new file mode 100644 index 000000000000..cccaa4457f5e --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PyZMQ.md @@ -0,0 +1,29 @@ +--- +hide: + - toc +--- + +PyZMQ +===== + + +Python bindings for ZeroMQ + +https://www.zeromq.org/bindings:python +# Available modules + + +The overview below shows which PyZMQ installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PyZMQ, load one of these modules using a `module load` command like: + +```shell +module load PyZMQ/25.1.1-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PyZMQ/25.1.1-GCCcore-12.3.0|x|x|x|x|x|x| +|PyZMQ/24.0.1-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/PycURL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/PycURL.md new file mode 100644 index 000000000000..e7b5a80f21e7 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/PycURL.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +PycURL +====== + + +PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features. + +http://pycurl.io/ +# Available modules + + +The overview below shows which PycURL installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using PycURL, load one of these modules using a `module load` command like: + +```shell +module load PycURL/7.45.2-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|PycURL/7.45.2-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pychopper.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pychopper.md index 21fc1590ab8a..eeb503213c47 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pychopper.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pychopper.md @@ -6,6 +6,10 @@ hide: Pychopper ========= + +A tool to identify, orient, trim and rescue full length cDNA reads. + +https://github.com/nanoporetech/pychopper # Available modules @@ -17,8 +21,15 @@ To start using Pychopper, load one of these modules using a `module load` comman module load Pychopper/2.3.1-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Pychopper/2.3.1-intel-2019b-Python-3.7.4|-|-|x|-|x|x| + + +### Pychopper/2.3.1-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Pychopper/2.3.1-intel-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| +edlib-1.3.8.post1, parasail-1.2, Pychopper-2.3.1, sphinx_rtd_theme-0.4.3, tqdm-4.45.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pyomo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pyomo.md index 4b53ccc4e873..e326358727de 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pyomo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pyomo.md @@ -6,6 +6,10 @@ hide: Pyomo ===== + +Pyomo is a Python-based open-source software package that supports a diverse set of optimization capabilities for formulating and analyzing optimization models. + +https://www.pyomo.org/ # Available modules @@ -17,8 +21,15 @@ To start using Pyomo, load one of these modules using a `module load` command li module load Pyomo/6.4.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Pyomo/6.4.2-foss-2022a|x|x|x|-|x|x| + + +### Pyomo/6.4.2-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Pyomo/6.4.2-foss-2022a|x|x|x|-|x|x|x|x| +ply-3.11, Pyomo-6.4.2, PyUtilib-6.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Pysam.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Pysam.md index 1968c2f2c0fc..cf6ecda375cd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Pysam.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Pysam.md @@ -6,6 +6,10 @@ hide: Pysam ===== + +Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. + +https://github.com/pysam-developers/pysam # Available modules @@ -14,23 +18,25 @@ The overview below shows which Pysam installations are available per HPC-UGent T To start using Pysam, load one of these modules using a `module load` command like: ```shell -module load Pysam/0.21.0-GCC-12.2.0 +module load Pysam/0.22.0-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Pysam/0.21.0-GCC-12.2.0|x|x|x|x|x|x|x|x| -|Pysam/0.19.1-GCC-11.3.0|x|x|x|x|x|x|x|x| -|Pysam/0.18.0-GCC-11.2.0|x|x|x|-|x|x|x|x| -|Pysam/0.17.0-GCC-11.2.0|x|x|x|-|x|x|x|x| -|Pysam/0.16.0.1-iccifort-2020.4.304|-|x|x|x|x|x|x|x| -|Pysam/0.16.0.1-iccifort-2020.1.217|-|x|x|-|x|x|x|x| -|Pysam/0.16.0.1-GCC-10.3.0|x|x|x|x|x|x|x|x| -|Pysam/0.16.0.1-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x|x|x| -|Pysam/0.16.0.1-GCC-10.2.0|x|x|x|x|x|x|x|x| -|Pysam/0.16.0.1-GCC-9.3.0|-|x|x|-|x|x|x|x| -|Pysam/0.16.0.1-GCC-8.3.0|-|x|x|-|x|x|x|x| -|Pysam/0.15.3-iccifort-2019.5.281|-|x|x|-|x|x|x|x| -|Pysam/0.15.3-GCC-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Pysam/0.22.0-GCC-12.3.0|x|x|x|x|x|x| +|Pysam/0.21.0-GCC-12.2.0|x|x|x|x|x|x| +|Pysam/0.19.1-GCC-11.3.0|x|x|x|x|x|x| +|Pysam/0.18.0-GCC-11.2.0|x|x|x|-|x|x| +|Pysam/0.17.0-GCC-11.2.0-Python-2.7.18|x|x|x|x|x|x| +|Pysam/0.17.0-GCC-11.2.0|x|x|x|-|x|x| +|Pysam/0.16.0.1-iccifort-2020.4.304|-|x|x|x|x|x| +|Pysam/0.16.0.1-iccifort-2020.1.217|-|x|x|-|x|x| +|Pysam/0.16.0.1-GCC-10.3.0|x|x|x|x|x|x| +|Pysam/0.16.0.1-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x| +|Pysam/0.16.0.1-GCC-10.2.0|x|x|x|x|x|x| +|Pysam/0.16.0.1-GCC-9.3.0|-|x|x|-|x|x| +|Pysam/0.16.0.1-GCC-8.3.0|-|x|x|-|x|x| +|Pysam/0.15.3-iccifort-2019.5.281|-|x|x|-|x|x| +|Pysam/0.15.3-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Python-bundle-PyPI.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Python-bundle-PyPI.md index 2a00ffe93df2..07729870be85 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Python-bundle-PyPI.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Python-bundle-PyPI.md @@ -6,6 +6,10 @@ hide: Python-bundle-PyPI ================== + +Bundle of Python packages from PyPI + +https://python.org/ # Available modules @@ -14,11 +18,25 @@ The overview below shows which Python-bundle-PyPI installations are available pe To start using Python-bundle-PyPI, load one of these modules using a `module load` command like: ```shell -module load Python-bundle-PyPI/2023.06-GCCcore-12.3.0 +module load Python-bundle-PyPI/2023.10-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Python-bundle-PyPI/2023.10-GCCcore-13.2.0|x|x|x|x|x|x| +|Python-bundle-PyPI/2023.06-GCCcore-12.3.0|x|x|x|x|x|x| + + +### Python-bundle-PyPI/2023.10-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.13, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.1, attrs-23.1.0, Babel-2.13.1, backports.entry-points-selectable-1.2.0, backports.functools_lru_cache-1.6.6, bitarray-2.8.2, bitstring-4.1.2, blist-1.3.6, cachecontrol-0.13.1, cachy-0.3.0, certifi-2023.7.22, cffi-1.16.0, chardet-5.2.0, charset-normalizer-3.3.1, cleo-2.0.1, click-8.1.7, cloudpickle-3.0.0, colorama-0.4.6, commonmark-0.9.1, crashtest-0.4.1, Cython-3.0.4, decorator-5.1.1, distlib-0.3.7, distro-1.8.0, docopt-0.6.2, docutils-0.20.1, doit-0.36.0, dulwich-0.21.6, ecdsa-0.18.0, editables-0.5, exceptiongroup-1.1.3, execnet-2.0.2, filelock-3.13.0, fsspec-2023.10.0, future-0.18.3, glob2-0.7, html5lib-1.1, idna-3.4, imagesize-1.4.1, importlib_metadata-6.8.0, importlib_resources-6.1.0, iniconfig-2.0.0, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jaraco.classes-3.3.0, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.3.2, jsonschema-4.17.3, keyring-24.2.0, keyrings.alt-5.0.0, liac-arff-2.5.0, lockfile-0.12.2, markdown-it-py-3.0.0, MarkupSafe-2.1.3, mdurl-0.1.2, mock-5.1.0, more-itertools-10.1.0, msgpack-1.0.7, netaddr-0.9.0, netifaces-0.11.0, packaging-23.2, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.11.2, pbr-5.11.1, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.11.0, pluggy-1.3.0, pooch-1.8.0, psutil-5.9.6, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.5.0, pycparser-2.21, pycryptodome-3.19.0, pydevtool-0.3.0, Pygments-2.16.1, Pygments-2.16.1, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.1.1, pyrsistent-0.20.0, pytest-7.4.3, pytest-xdist-3.3.1, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2023.3.post1, rapidfuzz-2.15.2, regex-2023.10.3, requests-2.31.0, requests-toolbelt-1.0.0, rich-13.6.0, rich-click-1.7.0, scandir-1.10.0, SecretStorage-3.3.3, semantic_version-2.10.0, shellingham-1.5.4, simplegeneric-0.8.1, simplejson-3.19.2, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, sphinx-7.2.6, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-jsmath-1.0.1, sphinxcontrib_applehelp-1.0.7, sphinxcontrib_devhelp-1.0.5, sphinxcontrib_htmlhelp-2.0.4, sphinxcontrib_qthelp-1.0.6, sphinxcontrib_serializinghtml-1.1.9, sphinxcontrib_websupport-1.2.6, tabulate-0.9.0, threadpoolctl-3.2.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.12.1, typing_extensions-4.8.0, ujson-5.8.0, urllib3-2.0.7, wcwidth-0.2.8, webencodings-0.5.1, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.17.0 + +### Python-bundle-PyPI/2023.06-GCCcore-12.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Python-bundle-PyPI/2023.06-GCCcore-12.3.0|x|x|x|x|x|x|x|x| +alabaster-0.7.13, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.1, attrs-23.1.0, Babel-2.12.1, backports.entry-points-selectable-1.2.0, backports.functools_lru_cache-1.6.5, bitstring-4.0.2, blist-1.3.6, CacheControl-0.12.14, cachy-0.3.0, certifi-2023.5.7, cffi-1.15.1, chardet-5.1.0, charset-normalizer-3.1.0, cleo-2.0.1, click-8.1.3, cloudpickle-2.2.1, colorama-0.4.6, commonmark-0.9.1, crashtest-0.4.1, Cython-0.29.35, decorator-5.1.1, distlib-0.3.6, distro-1.8.0, docopt-0.6.2, docutils-0.20.1, doit-0.36.0, dulwich-0.21.5, ecdsa-0.18.0, editables-0.3, exceptiongroup-1.1.1, execnet-1.9.0, filelock-3.12.2, fsspec-2023.6.0, future-0.18.3, glob2-0.7, html5lib-1.1, idna-3.4, imagesize-1.4.1, importlib_metadata-6.7.0, importlib_resources-5.12.0, iniconfig-2.0.0, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jaraco.classes-3.2.3, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.2.0, jsonschema-4.17.3, keyring-23.13.1, keyrings.alt-4.2.0, liac-arff-2.5.0, lockfile-0.12.2, markdown-it-py-3.0.0, MarkupSafe-2.1.3, mdurl-0.1.2, mock-5.0.2, more-itertools-9.1.0, msgpack-1.0.5, netaddr-0.8.0, netifaces-0.11.0, packaging-23.1, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.11.1, pbr-5.11.1, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.8.0, pluggy-1.2.0, pooch-1.7.0, psutil-5.9.5, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.5.0, pycparser-2.21, pycryptodome-3.18.0, pydevtool-0.3.0, Pygments-2.15.1, Pygments-2.15.1, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.1.0, pyrsistent-0.19.3, pytest-7.4.0, pytest-xdist-3.3.1, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2023.3, rapidfuzz-2.15.1, regex-2023.6.3, requests-2.31.0, requests-toolbelt-1.0.0, rich-13.4.2, rich-click-1.6.1, scandir-1.10.0, SecretStorage-3.3.3, semantic_version-2.10.0, shellingham-1.5.0.post1, simplegeneric-0.8.1, simplejson-3.19.1, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, Sphinx-7.0.1, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-applehelp-1.0.4, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.1, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.9.0, threadpoolctl-3.1.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.11.8, typing_extensions-4.6.3, ujson-5.8.0, urllib3-1.26.16, wcwidth-0.2.6, webencodings-0.5.1, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.15.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Python.md index 8f31eefece94..3c465881e755 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Python.md @@ -6,6 +6,10 @@ hide: Python ====== + +Python is a programming language that lets you work more quickly and integrate your systems more effectively. + +https://python.org/ # Available modules @@ -14,32 +18,131 @@ The overview below shows which Python installations are available per HPC-UGent To start using Python, load one of these modules using a `module load` command like: ```shell -module load Python/3.11.3-GCCcore-12.3.0 +module load Python/3.11.5-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Python/3.11.3-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Python/3.10.8-GCCcore-12.2.0-bare|x|x|x|x|x|x|x|x| -|Python/3.10.8-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Python/3.10.4-GCCcore-11.3.0-bare|x|x|x|x|x|x|x|x| -|Python/3.10.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Python/3.9.6-GCCcore-11.2.0-bare|x|x|x|x|x|x|x|x| -|Python/3.9.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Python/3.9.5-GCCcore-10.3.0-bare|x|x|x|x|x|x|x|x| -|Python/3.9.5-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Python/3.8.6-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Python/3.8.2-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Python/3.7.4-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|Python/3.7.2-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|Python/2.7.18-GCCcore-12.2.0-bare|x|x|x|x|x|x|x|x| -|Python/2.7.18-GCCcore-11.3.0-bare|x|x|x|x|x|x|x|x| -|Python/2.7.18-GCCcore-11.2.0-bare|x|x|x|x|x|x|x|x| -|Python/2.7.18-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Python/2.7.18-GCCcore-10.3.0-bare|x|x|x|x|x|x|x|x| -|Python/2.7.18-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Python/2.7.18-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Python/2.7.16-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|Python/2.7.15-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Python/3.11.5-GCCcore-13.2.0|x|x|x|x|x|x| +|Python/3.11.3-GCCcore-12.3.0|x|x|x|x|x|x| +|Python/3.10.8-GCCcore-12.2.0-bare|x|x|x|x|x|x| +|Python/3.10.8-GCCcore-12.2.0|x|x|x|x|x|x| +|Python/3.10.4-GCCcore-11.3.0-bare|x|x|x|x|x|x| +|Python/3.10.4-GCCcore-11.3.0|x|x|x|x|x|x| +|Python/3.9.6-GCCcore-11.2.0-bare|x|x|x|x|x|x| +|Python/3.9.6-GCCcore-11.2.0|x|x|x|x|x|x| +|Python/3.9.5-GCCcore-10.3.0-bare|x|x|x|x|x|x| +|Python/3.9.5-GCCcore-10.3.0|x|x|x|x|x|x| +|Python/3.8.6-GCCcore-10.2.0|x|x|x|x|x|x| +|Python/3.8.2-GCCcore-9.3.0|x|x|x|x|x|x| +|Python/3.7.4-GCCcore-8.3.0|x|x|x|x|x|x| +|Python/3.7.2-GCCcore-8.2.0|-|x|-|-|-|-| +|Python/2.7.18-GCCcore-12.3.0|x|x|x|x|x|x| +|Python/2.7.18-GCCcore-12.2.0-bare|x|x|x|x|x|x| +|Python/2.7.18-GCCcore-11.3.0-bare|x|x|x|x|x|x| +|Python/2.7.18-GCCcore-11.2.0-bare|x|x|x|x|x|x| +|Python/2.7.18-GCCcore-11.2.0|x|x|x|x|x|x| +|Python/2.7.18-GCCcore-10.3.0-bare|x|x|x|x|x|x| +|Python/2.7.18-GCCcore-10.2.0|x|x|x|x|x|x| +|Python/2.7.18-GCCcore-9.3.0|x|x|x|x|x|x| +|Python/2.7.16-GCCcore-8.3.0|x|x|x|-|x|x| +|Python/2.7.15-GCCcore-8.2.0|-|x|-|-|-|-| + + +### Python/3.11.5-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +flit_core-3.9.0, pip-23.2.1, setuptools-68.2.2, wheel-0.41.2 + +### Python/3.11.3-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +flit_core-3.9.0, pip-23.1.2, setuptools-67.7.2, wheel-0.40.0 + +### Python/3.10.8-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.1, attrs-22.1.0, Babel-2.11.0, backports.entry-points-selectable-1.2.0, backports.functools_lru_cache-1.6.4, bcrypt-4.0.1, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.11, cachy-0.3.0, certifi-2022.9.24, cffi-1.15.1, chardet-5.0.0, charset-normalizer-2.1.1, cleo-1.0.0a5, click-8.1.3, clikit-0.6.2, cloudpickle-2.2.0, colorama-0.4.6, commonmark-0.9.1, crashtest-0.3.1, cryptography-38.0.3, Cython-0.29.32, decorator-5.1.1, distlib-0.3.6, docopt-0.6.2, docutils-0.19, doit-0.36.0, dulwich-0.20.50, ecdsa-0.18.0, editables-0.3, exceptiongroup-1.0.1, execnet-1.9.0, filelock-3.8.0, flit-3.8.0, flit_core-3.8.0, flit_scm-1.7.0, fsspec-2022.11.0, future-0.18.2, glob2-0.7, hatch_fancy_pypi_readme-22.8.0, hatch_vcs-0.2.0, hatchling-1.11.1, html5lib-1.1, idna-3.4, imagesize-1.4.1, importlib_metadata-5.0.0, importlib_resources-5.10.0, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jaraco.classes-3.2.3, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.2.0, jsonschema-4.17.0, keyring-23.11.0, keyrings.alt-4.2.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-2.1.1, mock-4.0.3, more-itertools-9.0.0, msgpack-1.0.4, netaddr-0.8.0, netifaces-0.11.0, packaging-21.3, paramiko-2.12.0, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.10.1, pbr-5.11.0, pexpect-4.8.0, pip-22.3.1, pkginfo-1.8.3, platformdirs-2.5.3, pluggy-1.0.0, poetry-1.2.2, poetry-core-1.3.2, poetry_plugin_export-1.2.0, pooch-1.6.0, psutil-5.9.4, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.4.8, pycparser-2.21, pycryptodome-3.17, pydevtool-0.3.0, Pygments-2.13.0, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.0.9, pyrsistent-0.19.2, pytest-7.2.0, pytest-xdist-3.1.0, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2022.6, regex-2022.10.31, requests-2.28.1, requests-toolbelt-0.9.1, rich-13.1.0, rich-click-1.6.0, scandir-1.10.0, SecretStorage-3.3.3, semantic_version-2.10.0, setuptools-63.4.3, setuptools-rust-1.5.2, setuptools_scm-7.0.5, shellingham-1.5.0, simplegeneric-0.8.1, simplejson-3.17.6, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, Sphinx-5.3.0, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.0, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.9.0, threadpoolctl-3.1.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.11.6, typing_extensions-4.4.0, ujson-5.5.0, urllib3-1.26.12, virtualenv-20.16.6, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.38.4, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.10.0 + +### Python/3.10.4-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.5.1, atomicwrites-1.4.0, attrs-21.4.0, Babel-2.10.1, backports.entry_points_selectable-1.1.1, backports.functools_lru_cache-1.6.4, bcrypt-3.2.2, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.11, cachy-0.3.0, certifi-2021.10.8, cffi-1.15.0, chardet-4.0.0, charset-normalizer-2.0.12, cleo-0.8.1, click-8.1.3, clikit-0.6.2, colorama-0.4.4, crashtest-0.3.1, cryptography-37.0.1, Cython-0.29.28, decorator-5.1.1, distlib-0.3.4, docopt-0.6.2, docutils-0.17.1, ecdsa-0.17.0, editables-0.3, filelock-3.6.0, flit-3.7.1, flit-core-3.7.1, fsspec-2022.3.0, future-0.18.2, glob2-0.7, html5lib-1.1, idna-3.3, imagesize-1.3.0, importlib_metadata-4.11.3, importlib_resources-5.7.1, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.8.0, Jinja2-3.1.2, joblib-1.1.0, jsonschema-4.4.0, keyring-23.5.0, keyrings.alt-4.1.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-2.1.1, mock-4.0.3, more-itertools-8.12.0, msgpack-1.0.3, netaddr-0.8.0, netifaces-0.11.0, packaging-20.9, paramiko-2.10.4, pastel-0.2.1, pathlib2-2.3.7.post1, pathspec-0.9.0, pbr-5.8.1, pexpect-4.8.0, pip-22.0.4, pkginfo-1.8.2, platformdirs-2.4.1, pluggy-1.0.0, poetry-1.1.13, poetry-core-1.0.8, psutil-5.9.0, ptyprocess-0.7.0, py-1.11.0, py_expression_eval-0.3.14, pyasn1-0.4.8, pycparser-2.21, pycrypto-2.6.1, Pygments-2.12.0, pylev-1.4.0, PyNaCl-1.5.0, pyparsing-3.0.8, pyrsistent-0.18.1, pytest-7.1.2, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2022.1, regex-2022.4.24, requests-2.27.1, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.3.2, semantic_version-2.9.0, setuptools-62.1.0, setuptools-rust-1.3.0, setuptools_scm-6.4.2, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.6, six-1.16.0, snowballstemmer-2.2.0, sortedcontainers-2.4.0, Sphinx-4.5.0, sphinx-bootstrap-theme-0.8.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.0, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.8.9, threadpoolctl-3.1.0, toml-0.10.2, tomli-2.0.1, tomli_w-1.0.0, tomlkit-0.10.2, typing_extensions-4.2.0, ujson-5.2.0, urllib3-1.26.9, virtualenv-20.14.1, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.37.1, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.8.0 + +### Python/3.9.6-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-21.2.0, Babel-2.9.1, backports.entry_points_selectable-1.1.0, backports.functools_lru_cache-1.6.4, bcrypt-3.2.0, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2021.5.30, cffi-1.14.6, chardet-4.0.0, charset-normalizer-2.0.4, cleo-0.8.1, click-8.0.1, clikit-0.6.2, colorama-0.4.4, crashtest-0.3.1, cryptography-3.4.7, Cython-0.29.24, decorator-5.0.9, distlib-0.3.2, docopt-0.6.2, docutils-0.17.1, ecdsa-0.17.0, filelock-3.0.12, flit-3.3.0, flit-core-3.3.0, fsspec-2021.7.0, future-0.18.2, glob2-0.7, html5lib-1.1, idna-3.2, imagesize-1.2.0, importlib_metadata-4.6.3, importlib_resources-5.2.2, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.7.1, Jinja2-3.0.1, joblib-1.0.1, jsonschema-3.2.0, keyring-21.2.0, keyrings.alt-4.1.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-2.0.1, mock-4.0.3, more-itertools-8.8.0, msgpack-1.0.2, netaddr-0.8.0, netifaces-0.11.0, nose-1.3.7, packaging-20.9, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.6, paycheck-1.0.2, pbr-5.6.0, pexpect-4.8.0, pip-21.2.2, pkginfo-1.7.1, platformdirs-2.2.0, pluggy-0.13.1, poetry-1.1.7, poetry-core-1.0.3, psutil-5.8.0, ptyprocess-0.7.0, py-1.10.0, py_expression_eval-0.3.13, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.9.0, pylev-1.4.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.18.0, pytest-6.2.4, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2021.1, regex-2021.8.3, requests-2.26.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.3.1, semantic_version-2.8.5, setuptools-57.4.0, setuptools-rust-0.12.1, setuptools_scm-6.0.1, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.3, six-1.16.0, snowballstemmer-2.1.0, sortedcontainers-2.4.0, Sphinx-4.1.2, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-2.0.0, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.5, sphinxcontrib-websupport-1.2.4, tabulate-0.8.9, threadpoolctl-2.2.0, toml-0.10.2, tomlkit-0.7.2, typing_extensions-3.10.0.0, ujson-4.0.2, urllib3-1.26.6, virtualenv-20.7.0, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.36.2, xlrd-2.0.1, zipfile36-0.1.3, zipp-3.5.0 + +### Python/3.9.5-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-21.2.0, Babel-2.9.1, bcrypt-3.2.0, bitstring-3.1.7, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2020.12.5, cffi-1.14.5, chardet-4.0.0, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.4, crashtest-0.3.1, cryptography-3.4.7, Cython-0.29.23, decorator-5.0.7, distlib-0.3.1, docopt-0.6.2, docutils-0.17.1, ecdsa-0.16.1, filelock-3.0.12, flit-3.2.0, flit-core-3.2.0, fsspec-2021.4.0, future-0.18.2, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib_metadata-4.0.1, iniconfig-1.1.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.6.0, Jinja2-2.11.3, joblib-1.0.1, jsonschema-3.2.0, keyring-21.8.0, keyrings.alt-4.0.2, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-4.0.3, more-itertools-8.7.0, msgpack-1.0.2, netaddr-0.8.0, netifaces-0.10.9, nose-1.3.7, packaging-20.9, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.6.0, pexpect-4.8.0, pip-21.1.1, pkginfo-1.7.0, pluggy-0.13.1, poetry-1.1.6, poetry-core-1.0.3, psutil-5.8.0, ptyprocess-0.7.0, py-1.10.0, py_expression_eval-0.3.13, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.9.0, pylev-1.3.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.17.3, pytest-6.2.4, python-dateutil-2.8.1, pytoml-0.1.21, pytz-2021.1, regex-2021.4.4, requests-2.25.1, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.3.1, semantic_version-2.8.5, setuptools-56.2.0, setuptools-rust-0.12.1, setuptools_scm-6.0.1, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.2, six-1.16.0, snowballstemmer-2.1.0, sortedcontainers-2.3.0, Sphinx-4.0.0, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-1.0.3, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.4, sphinxcontrib-websupport-1.2.4, tabulate-0.8.9, threadpoolctl-2.1.0, toml-0.10.2, tomlkit-0.7.0, ujson-4.0.2, urllib3-1.26.4, virtualenv-20.4.6, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.36.2, xlrd-2.0.1, zipp-3.4.1 + +### Python/3.8.6-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-20.2.0, Babel-2.8.0, bcrypt-3.2.0, bitstring-3.1.7, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2020.6.20, cffi-1.14.3, chardet-3.0.4, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.3, crashtest-0.3.1, cryptography-3.1.1, Cython-0.29.21, decorator-4.4.2, distlib-0.3.1, docopt-0.6.2, docutils-0.16, ecdsa-0.16.0, filelock-3.0.12, flit-3.0.0, flit-core-3.0.0, fsspec-0.8.4, future-0.18.2, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib_metadata-2.0.0, iniconfig-1.0.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, jeepney-0.4.3, Jinja2-2.11.2, joblib-0.17.0, jsonschema-3.2.0, keyring-21.4.0, keyrings.alt-4.0.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-4.0.2, more-itertools-8.5.0, msgpack-1.0.0, netaddr-0.8.0, netifaces-0.10.9, nose-1.3.7, packaging-20.4, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.5.0, pexpect-4.8.0, pip-20.2.3, pkginfo-1.5.0.1, pluggy-0.13.1, poetry-1.1.3, poetry-core-1.0.0, psutil-5.7.2, ptyprocess-0.6.0, py-1.9.0, py_expression_eval-0.3.10, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.7.1, pylev-1.3.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.17.3, pytest-6.1.1, python-dateutil-2.8.1, pytoml-0.1.21, pytz-2020.1, regex-2020.10.11, requests-2.24.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-3.1.2, setuptools-50.3.0, setuptools_scm-4.1.2, shellingham-1.3.2, simplegeneric-0.8.1, simplejson-3.17.2, six-1.15.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-3.2.1, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-1.0.3, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.4, sphinxcontrib-websupport-1.2.4, tabulate-0.8.7, threadpoolctl-2.1.0, toml-0.10.1, tomlkit-0.7.0, ujson-4.0.1, urllib3-1.25.10, virtualenv-20.0.34, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.35.1, xlrd-1.2.0, zipp-3.3.0 + +### Python/3.8.2-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.3, asn1crypto-1.3.0, atomicwrites-1.3.0, attrs-19.3.0, Babel-2.8.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2020.4.5.1, cffi-1.14.0, chardet-3.0.4, click-7.1.1, cryptography-2.9.2, Cython-0.29.16, decorator-4.4.2, distlib-0.3.0, docopt-0.6.2, docutils-0.16, ecdsa-0.15, filelock-3.0.12, future-0.18.2, idna-2.9, imagesize-1.2.0, importlib_metadata-1.6.0, intervaltree-3.0.2, ipaddress-1.0.23, Jinja2-2.11.2, joblib-0.14.1, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-4.0.1, more-itertools-8.2.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-20.3, paramiko-2.7.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.4.5, pip-20.0.2, pluggy-0.13.1, psutil-5.7.0, py-1.8.1, py_expression_eval-0.3.9, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, PyNaCl-1.3.0, pyparsing-2.4.7, pytest-5.4.1, python-dateutil-2.8.1, pytz-2019.3, requests-2.23.0, scandir-1.10.0, setuptools-45.2.0, setuptools_scm-3.5.0, six-1.14.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-3.0.2, sphinxcontrib-applehelp-1.0.2, sphinxcontrib-devhelp-1.0.2, sphinxcontrib-htmlhelp-1.0.3, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.3, sphinxcontrib-serializinghtml-1.1.4, sphinxcontrib-websupport-1.2.1, tabulate-0.8.7, toml-0.10.0, ujson-2.0.3, urllib3-1.25.9, virtualenv-20.0.18, wcwidth-0.1.9, wheel-0.34.2, xlrd-1.2.0, zipp-1.2.0 + +### Python/3.7.4-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.7.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2019.9.11, cffi-1.12.3, chardet-3.0.4, Click-7.0, cryptography-2.7, Cython-0.29.13, deap-1.3.0, decorator-4.4.0, docopt-0.6.2, docutils-0.15.2, ecdsa-0.13.2, future-0.17.1, idna-2.8, imagesize-1.1.0, importlib_metadata-0.22, intervaltree-3.0.2, ipaddress-1.0.22, Jinja2-2.10.1, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-7.2.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.1, paramiko-2.6.0, pathlib2-2.3.4, paycheck-1.0.2, pbr-5.4.3, pip-19.2.3, pluggy-0.13.0, psutil-5.6.3, py-1.8.0, py_expression_eval-0.3.9, pyasn1-0.4.7, pycparser-2.19, pycrypto-2.6.1, Pygments-2.4.2, PyNaCl-1.3.0, pyparsing-2.4.2, pytest-5.1.2, python-dateutil-2.8.0, pytz-2019.2, requests-2.22.0, scandir-1.10.0, setuptools-41.2.0, setuptools_scm-3.3.3, six-1.12.0, snowballstemmer-1.9.1, sortedcontainers-2.1.0, Sphinx-2.2.0, sphinxcontrib-applehelp-1.0.1, sphinxcontrib-devhelp-1.0.1, sphinxcontrib-htmlhelp-1.0.2, sphinxcontrib-jsmath-1.0.1, sphinxcontrib-qthelp-1.0.2, sphinxcontrib-serializinghtml-1.1.3, sphinxcontrib-websupport-1.1.2, tabulate-0.8.3, ujson-1.35, urllib3-1.25.3, virtualenv-16.7.5, wcwidth-0.1.7, wheel-0.33.6, xlrd-1.2.0, zipp-0.6.0 + +### Python/3.7.2-GCCcore-8.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.6.0, bcrypt-3.1.6, bitstring-3.1.5, blist-1.3.6, certifi-2019.3.9, cffi-1.12.2, chardet-3.0.4, Click-7.0, cryptography-2.6.1, Cython-0.29.6, deap-1.2.2, decorator-4.3.2, docopt-0.6.2, docutils-0.14, ecdsa-0.13, future-0.17.1, idna-2.8, imagesize-1.1.0, ipaddress-1.0.22, Jinja2-2.10, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-2.0.0, more-itertools-6.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.0, paramiko-2.4.2, pathlib2-2.3.3, paycheck-1.0.2, pbr-5.1.3, pip-19.0.3, pluggy-0.9.0, psutil-5.6.1, py-1.8.0, py_expression_eval-0.3.6, pyasn1-0.4.5, pycparser-2.19, pycrypto-2.6.1, Pygments-2.3.1, PyNaCl-1.3.0, pyparsing-2.3.1, pytest-4.3.1, python-dateutil-2.8.0, pytz-2018.9, requests-2.21.0, scandir-1.10.0, setuptools-40.8.0, setuptools_scm-3.2.0, six-1.12.0, snowballstemmer-1.2.1, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.0, tabulate-0.8.3, ujson-1.35, urllib3-1.24.1, virtualenv-16.4.3, wcwidth-0.1.7, wheel-0.33.1, xlrd-1.2.0 + +### Python/2.7.18-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +pip-20.3.4, setuptools-44.1.1, wheel-0.37.1 + +### Python/2.7.18-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, argparse-1.4.0, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-21.2.0, Babel-2.9.1, backports.entry_points_selectable-1.1.0, backports.functools_lru_cache-1.6.4, bcrypt-3.1.7, bitstring-3.1.9, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2021.5.30, cffi-1.14.6, chardet-4.0.0, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.4, configparser-4.0.2, contextlib2-0.6.0.post1, cryptography-3.3.2, Cython-0.29.24, decorator-4.4.2, distlib-0.3.2, docopt-0.6.2, docutils-0.17.1, ecdsa-0.17.0, entrypoints-0.3, enum34-1.1.10, filelock-3.0.12, funcsigs-1.0.2, functools32-3.2.3-2, future-0.18.2, futures-3.3.0, glob2-0.6, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib_metadata-1.7.0, importlib_resources-3.3.1, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, Jinja2-2.11.3, joblib-0.14.1, jsonschema-3.2.0, keyring-18.0.1, keyrings.alt-3.2.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, msgpack-1.0.2, netaddr-0.8.0, netifaces-0.11.0, nose-1.3.7, packaging-20.9, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.6, paycheck-1.0.2, pbr-5.6.0, pexpect-4.8.0, pip-20.3.4, pkginfo-1.7.1, platformdirs-2.0.2, pluggy-0.13.1, poetry-1.1.7, poetry-core-1.0.3, psutil-5.8.0, ptyprocess-0.7.0, py-1.10.0, py_expression_eval-0.3.13, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, pylev-1.4.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.16.1, pytest-4.6.11, python-dateutil-2.8.2, pytoml-0.1.21, pytz-2021.1, regex-2021.3.17, requests-2.26.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-2.3.1, setuptools-44.1.1, setuptools_scm-5.0.2, shellingham-1.4.0, simplegeneric-0.8.1, simplejson-3.17.3, singledispatch-3.7.0, six-1.16.0, snowballstemmer-2.1.0, sortedcontainers-2.4.0, Sphinx-1.8.6, sphinx-bootstrap-theme-0.8.0, sphinxcontrib-websupport-1.1.2, subprocess32-3.5.4, tabulate-0.8.9, toml-0.10.2, tomlkit-0.7.2, typing-3.10.0.0, ujson-2.0.3, urllib3-1.26.6, virtualenv-20.7.0, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.36.2, xlrd-2.0.1, zipp-1.2.0 + +### Python/2.7.18-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.4, argparse-1.4.0, asn1crypto-1.4.0, atomicwrites-1.4.0, attrs-20.2.0, Babel-2.8.0, backports.functools-lru-cache-1.6.1, bcrypt-3.1.7, bitstring-3.1.7, blist-1.3.6, CacheControl-0.12.6, cachy-0.3.0, certifi-2020.6.20, cffi-1.14.3, chardet-3.0.4, cleo-0.8.1, click-7.1.2, clikit-0.6.2, colorama-0.4.3, configparser-4.0.2, contextlib2-0.6.0.post1, cryptography-3.1.1, Cython-0.29.21, decorator-4.4.2, distlib-0.3.1, docopt-0.6.2, docutils-0.16, ecdsa-0.16.0, entrypoints-0.3, enum34-1.1.10, filelock-3.0.12, funcsigs-1.0.2, functools32-3.2.3-2, future-0.18.2, futures-3.3.0, glob2-0.6, html5lib-1.1, idna-2.10, imagesize-1.2.0, importlib-metadata-1.7.0, importlib_resources-3.0.0, intervaltree-3.1.0, intreehooks-1.0, ipaddress-1.0.23, Jinja2-2.11.2, joblib-0.14.1, jsonschema-3.2.0, keyring-18.0.1, keyrings.alt-3.2.0, liac-arff-2.5.0, lockfile-0.12.2, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, msgpack-1.0.0, netaddr-0.8.0, netifaces-0.10.9, nose-1.3.7, packaging-20.4, paramiko-2.7.2, pastel-0.2.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.5.0, pexpect-4.8.0, pip-20.3.4, pkginfo-1.5.0.1, pluggy-0.13.1, poetry-1.1.3, poetry-core-1.0.0, psutil-5.7.2, ptyprocess-0.6.0, py-1.9.0, py_expression_eval-0.3.10, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, pylev-1.3.0, PyNaCl-1.4.0, pyparsing-2.4.7, pyrsistent-0.16.1, pytest-4.6.11, python-dateutil-2.8.1, pytoml-0.1.21, pytz-2020.1, regex-2020.10.11, requests-2.24.0, requests-toolbelt-0.9.1, scandir-1.10.0, SecretStorage-2.3.1, setuptools-44.1.1, setuptools_scm-4.1.2, shellingham-1.3.2, simplegeneric-0.8.1, simplejson-3.17.2, singledispatch-3.4.0.3, six-1.15.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-1.8.5, sphinx-bootstrap-theme-0.7.1, sphinxcontrib-websupport-1.1.2, subprocess32-3.5.4, tabulate-0.8.7, toml-0.10.1, tomlkit-0.7.0, typing-3.7.4.3, ujson-2.0.3, urllib3-1.25.10, virtualenv-20.0.34, wcwidth-0.2.5, webencodings-0.5.1, wheel-0.35.1, xlrd-1.2.0, zipp-1.2.0 + +### Python/2.7.18-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, appdirs-1.4.3, asn1crypto-1.3.0, atomicwrites-1.3.0, attrs-19.3.0, Babel-2.8.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2020.4.5.1, cffi-1.14.0, chardet-3.0.4, click-7.1.1, configparser-4.0.2, contextlib2-0.6.0.post1, cryptography-2.9.2, Cython-0.29.16, decorator-4.4.2, distlib-0.3.0, docopt-0.6.2, docutils-0.16, ecdsa-0.15, enum34-1.1.10, filelock-3.0.12, funcsigs-1.0.2, future-0.18.2, idna-2.9, imagesize-1.2.0, importlib_metadata-1.6.0, importlib_resources-1.4.0, intervaltree-3.0.2, ipaddress-1.0.23, Jinja2-2.11.2, joblib-0.14.1, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-20.3, paramiko-2.7.1, pathlib2-2.3.5, paycheck-1.0.2, pbr-5.4.5, pip-20.0.2, pluggy-0.13.1, psutil-5.7.0, py-1.8.1, py_expression_eval-0.3.9, pyasn1-0.4.8, pycparser-2.20, pycrypto-2.6.1, Pygments-2.5.2, PyNaCl-1.3.0, pyparsing-2.4.7, pytest-4.6.9, python-dateutil-2.8.1, pytz-2019.3, requests-2.23.0, scandir-1.10.0, setuptools-44.0.0, setuptools_scm-3.5.0, singledispatch-3.4.0.3, six-1.14.0, snowballstemmer-2.0.0, sortedcontainers-2.2.2, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.2, tabulate-0.8.7, toml-0.10.0, typing-3.7.4.1, ujson-2.0.3, urllib3-1.25.9, virtualenv-20.0.18, wcwidth-0.1.9, wheel-0.34.2, xlrd-1.2.0, zipp-1.2.0 + +### Python/2.7.16-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.7.0, bcrypt-3.1.7, bitstring-3.1.6, blist-1.3.6, certifi-2019.9.11, cffi-1.12.3, chardet-3.0.4, Click-7.0, configparser-4.0.2, contextlib2-0.5.5, cryptography-2.7, Cython-0.29.13, deap-1.3.0, decorator-4.4.0, docopt-0.6.2, docutils-0.15.2, ecdsa-0.13.2, enum34-1.1.6, funcsigs-1.0.2, future-0.17.1, idna-2.8, imagesize-1.1.0, importlib_metadata-0.22, intervaltree-3.0.2, ipaddress-1.0.22, Jinja2-2.10.1, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-3.0.5, more-itertools-5.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.1, paramiko-2.6.0, pathlib2-2.3.4, paycheck-1.0.2, pbr-5.4.3, pip-19.2.3, pluggy-0.13.0, psutil-5.6.3, py-1.8.0, py_expression_eval-0.3.9, pyasn1-0.4.7, pycparser-2.19, pycrypto-2.6.1, Pygments-2.4.2, PyNaCl-1.3.0, pyparsing-2.4.2, pytest-4.6.5, python-dateutil-2.8.0, pytz-2019.2, requests-2.22.0, scandir-1.10.0, setuptools-41.2.0, setuptools_scm-3.3.3, singledispatch-3.4.0.3, six-1.12.0, snowballstemmer-1.9.1, sortedcontainers-2.1.0, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.2, tabulate-0.8.3, typing-3.7.4.1, ujson-1.35, urllib3-1.25.3, virtualenv-16.7.5, wcwidth-0.1.7, wheel-0.33.6, xlrd-1.2.0, zipp-0.6.0 + +### Python/2.7.15-GCCcore-8.2.0 + +This is a list of extensions included in the module: + +alabaster-0.7.12, asn1crypto-0.24.0, atomicwrites-1.3.0, attrs-19.1.0, Babel-2.6.0, bcrypt-3.1.6, bitstring-3.1.5, blist-1.3.6, certifi-2019.3.9, cffi-1.12.2, chardet-3.0.4, Click-7.0, cryptography-2.6.1, Cython-0.29.6, deap-1.2.2, decorator-4.3.2, docopt-0.6.2, docutils-0.14, ecdsa-0.13, enum34-1.1.6, funcsigs-1.0.2, future-0.17.1, idna-2.8, imagesize-1.1.0, ipaddress-1.0.22, Jinja2-2.10, joblib-0.13.2, liac-arff-2.4.0, MarkupSafe-1.1.1, mock-2.0.0, more-itertools-5.0.0, netaddr-0.7.19, netifaces-0.10.9, nose-1.3.7, packaging-19.0, paramiko-2.4.2, pathlib2-2.3.3, paycheck-1.0.2, pbr-5.1.3, pip-19.0.3, pluggy-0.9.0, psutil-5.6.1, py-1.8.0, py_expression_eval-0.3.6, pyasn1-0.4.5, pycparser-2.19, pycrypto-2.6.1, Pygments-2.3.1, PyNaCl-1.3.0, pyparsing-2.3.1, pytest-4.3.1, python-dateutil-2.8.0, pytz-2018.9, requests-2.21.0, scandir-1.10.0, setuptools-40.8.0, setuptools_scm-3.2.0, singledispatch-3.4.0.3, six-1.12.0, snowballstemmer-1.2.1, Sphinx-1.8.5, sphinxcontrib-websupport-1.1.0, tabulate-0.8.3, typing-3.6.6, ujson-1.35, urllib3-1.24.1, virtualenv-16.4.3, wcwidth-0.1.7, wheel-0.33.1, xlrd-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QCA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QCA.md index 194fbc327115..3c717ea5d1f4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QCA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QCA.md @@ -6,6 +6,10 @@ hide: QCA === + +Taking a hint from the similarly-named Java Cryptography Architecture, QCA aims to provide a straightforward and cross-platform crypto API, using Qt datatypes and conventions. QCA separates the API from the implementation, using plugins known as Providers. The advantage of this model is to allow applications to avoid linking to or explicitly depending on any particular cryptographic library. This allows one to easily change or upgrade crypto implementations without even needing to recompile the application! QCA should work everywhere Qt does, including Windows/Unix/MacOSX. + +https://userbase.kde.org/QCA # Available modules @@ -17,8 +21,8 @@ To start using QCA, load one of these modules using a `module load` command like module load QCA/2.3.5-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|QCA/2.3.5-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QCA/2.3.5-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QCxMS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QCxMS.md new file mode 100644 index 000000000000..4b3dda4ec067 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QCxMS.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +QCxMS +===== + + +QCxMS is a quantum chemical based program to calculate electron ionization (EI) and collision induced dissociation (CID) mass spectra using Born-Oppenheimer Molecular Dynamics (BO-MD). It is the successor of the QCEIMS program, in which the EI part is exchanged to x to account for the greater general applicibility of the program. + +https://xtb-docs.readthedocs.io/en/latest/qcxms_doc/qcxms.html +# Available modules + + +The overview below shows which QCxMS installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using QCxMS, load one of these modules using a `module load` command like: + +```shell +module load QCxMS/5.0.3 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QCxMS/5.0.3|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QD.md index 1df3339abe53..fdf9cd37664b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QD.md @@ -6,6 +6,10 @@ hide: QD == + +Quad Double computation package + +https://github.com/scibuilder/QD # Available modules @@ -17,8 +21,8 @@ To start using QD, load one of these modules using a `module load` command like: module load QD/2.3.17-NVHPC-21.2-20160110 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|QD/2.3.17-NVHPC-21.2-20160110|x|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QD/2.3.17-NVHPC-21.2-20160110|x|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QGIS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QGIS.md index 8dd0ba949c10..2fc0115fb6a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QGIS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QGIS.md @@ -6,6 +6,10 @@ hide: QGIS ==== + +QGIS is a user friendly Open Source Geographic Information System (GIS) + +http://www.qgis.org/ # Available modules @@ -17,8 +21,8 @@ To start using QGIS, load one of these modules using a `module load` command lik module load QGIS/3.28.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|QGIS/3.28.1-foss-2021b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QGIS/3.28.1-foss-2021b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QIIME2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QIIME2.md index 01943da90d97..7aefb1cfa06d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QIIME2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QIIME2.md @@ -6,6 +6,10 @@ hide: QIIME2 ====== + +QIIME is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data. + +http://qiime2.org/ # Available modules @@ -14,15 +18,23 @@ The overview below shows which QIIME2 installations are available per HPC-UGent To start using QIIME2, load one of these modules using a `module load` command like: ```shell -module load QIIME2/2022.11 +module load QIIME2/2023.5.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QIIME2/2023.5.1-foss-2022a|x|x|x|x|x|x| +|QIIME2/2022.11|x|x|x|x|x|x| +|QIIME2/2021.8|-|-|-|-|-|x| +|QIIME2/2020.11|-|x|x|-|x|x| +|QIIME2/2020.8|-|x|x|-|x|x| +|QIIME2/2019.7|-|-|-|-|-|x| + + +### QIIME2/2023.5.1-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|QIIME2/2022.11|x|x|x|x|x|x|x|x| -|QIIME2/2021.8|-|-|-|-|-|x|-|x| -|QIIME2/2020.11|-|x|x|-|x|x|-|x| -|QIIME2/2020.8|-|x|x|-|x|x|-|x| -|QIIME2/2019.7|-|-|-|-|-|x|-|x| +altair-5.0.1, anyio-3.6.1, argcomplete-2.0.0, argon2-cffi-bindings-21.2.0, astor-0.8.1, atpublic-4.0, bibtexparser-1.4.0, biom-format-2.1.15, cached-property-1.5.2, contourpy-1.0.7, deblur-1.1.0, emperor-1.0.4, fastcluster-1.2.6, flufl-lock-8.0.1, formulaic-0.4.0, gneiss-0.4.6, ijson-3.2.3, interface_meta-1.3.0, iow-1.0.6, pylatexenc-2.10, pytz-deprecation-shim-0.1.0.post0, q2-alignment-2023.5.0, q2-composition-2023.5.0, q2-cutadapt-2023.5.1, q2-dada2-2023.5.0, q2-deblur-2023.5.0, q2-demux-2023.5.0, q2-diversity-2023.5.1, q2-diversity-lib-2023.5.0, q2-emperor-2023.5.0, q2-feature-classifier-2023.5.0, q2-feature-table-2023.5.0, q2-fragment-insertion-2023.5.0, q2-gneiss-2023.5.0, q2-longitudinal-2023.5.0, q2-metadata-2023.5.0, q2-phylogeny-2023.5.0, q2-quality-control-2023.5.0, q2-quality-filter-2023.5.0, q2-sample-classifier-2023.5.0, q2-taxa-2023.5.0, q2-types-2023.5.0, q2-vsearch-2023.5.0, q2cli-2023.5.1, q2templates-2023.5.0, QIIME2-2023.5.1, sniffio-1.3.0, toolz-0.12.0, tzdata-2022.7, tzlocal-5.0.1, unifrac-1.1.1, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QScintilla.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QScintilla.md index 7895ba56a2fb..8a53bfb7f3fb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QScintilla.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QScintilla.md @@ -6,6 +6,10 @@ hide: QScintilla ========== + +QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control + +https://www.riverbankcomputing.com/software/qscintilla # Available modules @@ -17,8 +21,8 @@ To start using QScintilla, load one of these modules using a `module load` comma module load QScintilla/2.11.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|QScintilla/2.11.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QScintilla/2.11.6-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QUAST.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QUAST.md index dc0a599c5470..1871b418af6f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QUAST.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QUAST.md @@ -6,6 +6,10 @@ hide: QUAST ===== + +QUAST evaluates genome assemblies by computing various metrics.It works both with and without reference genomes. The tool accepts multipleassemblies, thus is suitable for comparison. + +https://github.com/ablab/quast # Available modules @@ -17,11 +21,30 @@ To start using QUAST, load one of these modules using a `module load` command li module load QUAST/5.2.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QUAST/5.2.0-foss-2022a|x|x|x|x|x|x| +|QUAST/5.0.2-foss-2020b-Python-2.7.18|-|x|x|x|x|x| +|QUAST/5.0.2-foss-2020b|-|x|x|x|x|x| +|QUAST/5.0.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### QUAST/5.2.0-foss-2022a + +This is a list of extensions included in the module: + +QUAST-5.2.0 + +### QUAST/5.0.2-foss-2020b + +This is a list of extensions included in the module: + +QUAST-5.0.2, simplejson-3.17.2 + +### QUAST/5.0.2-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|QUAST/5.2.0-foss-2022a|x|x|x|x|x|x|x|x| -|QUAST/5.0.2-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| -|QUAST/5.0.2-foss-2020b|-|x|x|x|x|x|x|x| -|QUAST/5.0.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +QUAST-5.0.2, simplejson-3.17.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qhull.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qhull.md index e383e916b02c..8c87054032a6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qhull.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qhull.md @@ -6,6 +6,10 @@ hide: Qhull ===== + +Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. + +http://www.qhull.org # Available modules @@ -14,14 +18,15 @@ The overview below shows which Qhull installations are available per HPC-UGent T To start using Qhull, load one of these modules using a `module load` command like: ```shell -module load Qhull/2020.2-GCCcore-12.2.0 +module load Qhull/2020.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Qhull/2020.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Qhull/2020.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Qhull/2020.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Qhull/2020.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Qhull/2020.2-GCCcore-12.3.0|x|x|x|x|x|x| +|Qhull/2020.2-GCCcore-12.2.0|x|x|x|x|x|x| +|Qhull/2020.2-GCCcore-11.3.0|x|x|x|x|x|x| +|Qhull/2020.2-GCCcore-11.2.0|x|x|x|x|x|x| +|Qhull/2020.2-GCCcore-10.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5.md index fb1ea9a6890c..aee2e317688e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5.md @@ -6,6 +6,10 @@ hide: Qt5 === + +Qt is a comprehensive cross-platform C++ application framework. + +https://qt.io/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which Qt5 installations are available per HPC-UGent Tie To start using Qt5, load one of these modules using a `module load` command like: ```shell -module load Qt5/5.15.7-GCCcore-12.2.0 +module load Qt5/5.15.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Qt5/5.15.7-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Qt5/5.15.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Qt5/5.15.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Qt5/5.15.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Qt5/5.14.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Qt5/5.14.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Qt5/5.13.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Qt5/5.15.10-GCCcore-12.3.0|x|x|x|x|x|x| +|Qt5/5.15.7-GCCcore-12.2.0|x|x|x|x|x|x| +|Qt5/5.15.5-GCCcore-11.3.0|x|x|x|x|x|x| +|Qt5/5.15.2-GCCcore-11.2.0|x|x|x|x|x|x| +|Qt5/5.15.2-GCCcore-10.3.0|x|x|x|x|x|x| +|Qt5/5.14.2-GCCcore-10.2.0|x|x|x|x|x|x| +|Qt5/5.14.1-GCCcore-9.3.0|-|x|x|-|x|x| +|Qt5/5.13.1-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5Webkit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5Webkit.md index a95f2d01e450..9e7859abec0b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5Webkit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qt5Webkit.md @@ -6,6 +6,10 @@ hide: Qt5Webkit ========= + +Qt Port of WebKit. WebKit is an open source web browser engine. + +https://github.com/qt/qtwebkit # Available modules @@ -17,8 +21,8 @@ To start using Qt5Webkit, load one of these modules using a `module load` comman module load Qt5Webkit/5.212.0-alpha4-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Qt5Webkit/5.212.0-alpha4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Qt5Webkit/5.212.0-alpha4-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QtKeychain.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QtKeychain.md index c1b329b4afd0..4247ba1cb115 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QtKeychain.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QtKeychain.md @@ -6,6 +6,10 @@ hide: QtKeychain ========== + +Platform-independent Qt API for storing passwords securely. + +https://github.com/frankosterfeld/qtkeychain # Available modules @@ -17,8 +21,8 @@ To start using QtKeychain, load one of these modules using a `module load` comma module load QtKeychain/0.13.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|QtKeychain/0.13.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QtKeychain/0.13.2-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QtPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QtPy.md index 0ad28a5e6b8d..8e48df63d031 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QtPy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QtPy.md @@ -6,6 +6,10 @@ hide: QtPy ==== + +QtPy is a small abstraction layer that lets you write applications using a single API call to either PyQt or PySide. It provides support for PyQt5, PyQt4, PySide2 and PySide. + +https://github.com/spyder-ide/qtpy # Available modules @@ -17,10 +21,10 @@ To start using QtPy, load one of these modules using a `module load` command lik module load QtPy/2.3.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|QtPy/2.3.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|QtPy/2.2.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|QtPy/1.9.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QtPy/2.3.0-GCCcore-11.3.0|x|x|x|x|x|x| +|QtPy/2.2.1-GCCcore-11.2.0|x|x|x|-|x|x| +|QtPy/1.9.0-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qtconsole.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qtconsole.md index ab82961b7313..2801aa5cd86f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qtconsole.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qtconsole.md @@ -6,6 +6,10 @@ hide: Qtconsole ========= + +A rich Qt-based console for working with Jupyter kernels, supporting rich media output, session export, and more.The Qtconsole is a very lightweight application that largely feels like a terminal, but provides a number of enhancements only possible in a GUI, such as inline figures, proper multiline editing with syntax highlighting, graphical calltips, and more. + +https://jupyter.org/ # Available modules @@ -17,11 +21,11 @@ To start using Qtconsole, load one of these modules using a `module load` comman module load Qtconsole/5.4.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Qtconsole/5.4.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Qtconsole/5.3.2-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Qtconsole/5.0.2-foss-2020b|-|x|-|-|-|-|-|-| -|Qtconsole/5.0.2-GCCcore-10.2.0|-|-|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Qtconsole/5.4.0-GCCcore-11.3.0|x|x|x|x|x|x| +|Qtconsole/5.3.2-GCCcore-11.2.0|x|x|x|-|x|x| +|Qtconsole/5.0.2-foss-2020b|-|x|-|-|-|-| +|Qtconsole/5.0.2-GCCcore-10.2.0|-|-|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QuPath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QuPath.md new file mode 100644 index 000000000000..e363126920d5 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QuPath.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +QuPath +====== + + +QuPath is open source software for bioimage analysis.QuPath is often used for digital pathology applications because it offers a powerful set of tools for working with whole slide images - but it can be applied to lots of other kinds of image as well. + +https://qupath.github.io +# Available modules + + +The overview below shows which QuPath installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using QuPath, load one of these modules using a `module load` command like: + +```shell +module load QuPath/0.5.0-GCCcore-12.3.0-Java-17 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QuPath/0.5.0-GCCcore-12.3.0-Java-17|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qualimap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qualimap.md index 12722316324a..7176ce051196 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qualimap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qualimap.md @@ -6,6 +6,10 @@ hide: Qualimap ======== + +Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. + +http://qualimap.bioinfo.cipf.es/ # Available modules @@ -17,8 +21,8 @@ To start using Qualimap, load one of these modules using a `module load` command module load Qualimap/2.2.1-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Qualimap/2.2.1-foss-2020b-R-4.0.3|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Qualimap/2.2.1-foss-2020b-R-4.0.3|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QuantumESPRESSO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QuantumESPRESSO.md index 20c2f8e9b7f3..2a2cd5e3223a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QuantumESPRESSO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QuantumESPRESSO.md @@ -6,6 +6,10 @@ hide: QuantumESPRESSO =============== + +Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft). + +https://www.quantum-espresso.org # Available modules @@ -17,9 +21,9 @@ To start using QuantumESPRESSO, load one of these modules using a `module load` module load QuantumESPRESSO/7.0-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|QuantumESPRESSO/7.0-intel-2021b|x|x|x|-|x|x|x|x| -|QuantumESPRESSO/6.5-intel-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QuantumESPRESSO/7.0-intel-2021b|x|x|x|-|x|x| +|QuantumESPRESSO/6.5-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/QuickFF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/QuickFF.md index 05ff5df747ec..a18e2e8c5419 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/QuickFF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/QuickFF.md @@ -6,6 +6,10 @@ hide: QuickFF ======= + +QuickFF is a Python package developed at the Center forMolecular Modeling (CMM) to quickly derive accurate force fields from ab initiocalculations. + +https://molmod.github.io/QuickFF/ # Available modules @@ -17,9 +21,9 @@ To start using QuickFF, load one of these modules using a `module load` command module load QuickFF/2.2.7-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|QuickFF/2.2.7-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|QuickFF/2.2.4-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|QuickFF/2.2.7-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|QuickFF/2.2.4-intel-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Qwt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Qwt.md index 17620f5880d8..93196dddb5ea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Qwt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Qwt.md @@ -6,6 +6,10 @@ hide: Qwt === + +The Qwt library contains GUI Components and utility classes which are primarily useful for programs with a technical background. + +https://qwt.sourceforge.io/ # Available modules @@ -17,10 +21,10 @@ To start using Qwt, load one of these modules using a `module load` command like module load Qwt/6.2.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Qwt/6.2.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Qwt/6.2.0-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|Qwt/6.1.4-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Qwt/6.2.0-GCCcore-11.2.0|x|x|x|x|x|x| +|Qwt/6.2.0-GCCcore-10.3.0|-|x|x|-|x|x| +|Qwt/6.1.4-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/R-INLA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/R-INLA.md index ece76a7711b1..a7864d3f3931 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/R-INLA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/R-INLA.md @@ -6,6 +6,10 @@ hide: R-INLA ====== + +R-INLA is a package in R that do approximate Bayesian inference for Latent Gaussian Models. + +https://www.r-inla.org # Available modules @@ -14,11 +18,12 @@ The overview below shows which R-INLA installations are available per HPC-UGent To start using R-INLA, load one of these modules using a `module load` command like: ```shell -module load R-INLA/21.05.02-foss-2020b-R-4.0.4 +module load R-INLA/24.01.18-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|R-INLA/21.05.02-foss-2020b-R-4.0.4|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|R-INLA/24.01.18-foss-2023a|x|x|x|x|x|x| +|R-INLA/21.05.02-foss-2020b-R-4.0.4|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-Bioconductor.md b/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-Bioconductor.md index 26070f12aad0..22764e55f59a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-Bioconductor.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-Bioconductor.md @@ -6,6 +6,10 @@ hide: R-bundle-Bioconductor ===================== + +Bioconductor provides tools for the analysis and coprehension of high-throughput genomic data. + +https://bioconductor.org # Available modules @@ -14,18 +18,74 @@ The overview below shows which R-bundle-Bioconductor installations are available To start using R-bundle-Bioconductor, load one of these modules using a `module load` command like: ```shell -module load R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2 +module load R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2|x|x|x|x|x|x|x|x| -|R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| -|R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0|x|x|x|x|x|x|x|x| -|R-bundle-Bioconductor/3.14-foss-2021b-R-4.1.2|x|x|x|x|x|x|x|x| -|R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0|-|x|x|-|x|x|x|x| -|R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3|x|x|x|x|x|x|x|x| -|R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| -|R-bundle-Bioconductor/3.10-foss-2019b|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2|x|x|x|x|x|x| +|R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2|x|x|x|x|x|x| +|R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1|x|x|x|x|x|x| +|R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0|x|x|x|x|x|x| +|R-bundle-Bioconductor/3.14-foss-2021b-R-4.1.2|x|x|x|x|x|x| +|R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0|-|x|x|-|x|x| +|R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3|x|x|x|x|x|x| +|R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0|-|x|x|-|x|x| +|R-bundle-Bioconductor/3.10-foss-2019b|-|x|x|-|x|x| + + +### R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2 + +This is a list of extensions included in the module: + +affxparser-1.74.0, affy-1.80.0, affycoretools-1.74.0, affyio-1.72.0, AgiMicroRna-2.52.0, agricolae-1.3-7, ALDEx2-1.34.0, ALL-1.44.0, ANCOMBC-2.4.0, annaffy-1.74.0, annotate-1.80.0, AnnotationDbi-1.64.1, AnnotationFilter-1.26.0, AnnotationForge-1.44.0, AnnotationHub-3.10.0, anytime-0.3.9, aroma.affymetrix-3.2.1, aroma.apd-0.7.0, aroma.core-3.3.0, aroma.light-3.32.0, ash-1.0-15, ATACseqQC-1.26.0, AUCell-1.24.0, aws.s3-0.3.21, aws.signature-0.6.0, babelgene-22.9, ballgown-2.34.0, basilisk-1.14.2, basilisk.utils-1.14.1, batchelor-1.18.1, baySeq-2.36.0, beachmat-2.18.0, BH-1.84.0-0, Biobase-2.62.0, BiocBaseUtils-1.4.0, BiocFileCache-2.10.1, BiocGenerics-0.48.0, BiocIO-1.12.0, BiocManager-1.30.22, BiocNeighbors-1.20.2, BiocParallel-1.36.0, BiocSingular-1.18.0, BiocStyle-2.30.0, BiocVersion-3.18.1, biomaRt-2.58.0, biomformat-1.30.0, Biostrings-2.70.0, biovizBase-1.50.0, blme-1.0-5, bluster-1.12.0, bookdown-0.37, BSgenome-1.70.1, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.5, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.38.0, bumphunter-1.44.0, ca-0.71.1, CAGEfightR-1.22.0, CAGEr-2.8.0, CAMERA-1.58.0, Category-2.68.0, ccdata-1.28.0, ccmap-1.28.0, CGHbase-1.62.0, CGHcall-2.64.0, ChIPpeakAnno-3.36.0, chromVAR-1.24.0, clusterProfiler-4.10.0, CNEr-1.38.0, coloc-5.2.3, colorRamps-2.3.1, ComplexHeatmap-2.18.0, ConsensusClusterPlus-1.66.0, conumee-1.36.0, crossmeta-1.28.0, cummeRbund-2.44.0, cytolib-2.14.1, CytoML-2.14.0, dada2-1.30.0, ddPCRclust-1.22.0, DECIPHER-2.30.0, DeconRNASeq-1.44.0, decontam-1.22.0, decoupleR-2.8.0, DEGseq-1.56.1, DelayedArray-0.28.0, DelayedMatrixStats-1.24.0, densEstBayes-1.0-2.2, derfinder-1.36.0, derfinderHelper-1.36.0, DESeq2-1.42.0, diffcyt-1.22.0, dir.expiry-1.10.0, directlabels-2024.1.21, DirichletMultinomial-1.44.0, DNABarcodes-1.32.0, DNAcopy-1.76.0, DO.db-2.9, docopt-0.7.1, DOSE-3.28.2, dqrng-0.3.2, DRIMSeq-1.30.0, DropletUtils-1.22.0, DSS-2.50.1, dupRadar-1.32.0, DynDoc-1.80.0, EBImage-4.44.0, edgeR-4.0.12, egg-0.4.5, emmeans-1.10.0, enrichplot-1.22.0, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.26.0, escape-1.12.0, estimability-1.4.1, ExperimentHub-2.10.0, extraDistr-1.10.0, factoextra-1.0.7, fANCOVA-0.6-1, fda-6.1.4, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, feature-1.2.15, fgsea-1.28.0, filelock-1.0.3, flowAI-1.32.0, flowClean-1.40.0, flowClust-3.40.0, flowCore-2.14.0, flowDensity-1.36.1, flowFP-1.60.0, flowMerge-2.50.0, flowPeaks-1.48.0, FlowSOM-2.10.0, FlowSorted.Blood.EPIC-2.6.0, FlowSorted.CordBloodCombined.450k-1.18.0, flowStats-4.14.1, flowViz-1.66.0, flowWorkspace-4.14.2, FRASER-1.14.0, fresh-0.2.0, gcrma-2.74.0, gdsfmt-1.38.0, genefilter-1.84.0, geneLenDataBase-1.38.0, geneplotter-1.80.0, GENESIS-2.32.0, GENIE3-1.24.0, GenomeInfoDb-1.38.5, GenomeInfoDbData-1.2.11, GenomicAlignments-1.38.2, GenomicFeatures-1.54.1, GenomicFiles-1.38.0, GenomicInteractions-1.36.0, GenomicRanges-1.54.1, GenomicScores-2.14.3, GEOmap-2.5-5, GEOquery-2.70.0, ggbio-1.50.0, ggcyto-1.30.0, ggdendro-0.1.23, ggnewscale-0.4.9, ggpointdensity-0.1.0, ggrastr-1.0.2, ggseqlogo-0.1, ggthemes-5.0.0, ggtree-3.10.0, GLAD-2.66.0, Glimma-2.12.0, GlobalAncova-4.20.0, globaltest-5.56.0, GO.db-3.18.0, GOSemSim-2.28.1, goseq-1.54.0, GOstats-2.68.0, graph-1.80.0, graphite-1.48.0, GSEABase-1.64.0, gsmoothr-0.1.7, gson-0.1.0, GSVA-1.50.0, Gviz-1.46.1, GWASExactHW-1.01, GWASTools-1.48.0, HDF5Array-1.30.0, HDO.db-0.99.1, hdrcde-3.4, heatmaply-1.5.0, hgu133plus2.db-3.13.0, HiCBricks-1.20.0, HiCcompare-1.24.0, HMMcopy-1.44.0, Homo.sapiens-1.3.1, IHW-1.30.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.44.0, impute-1.76.0, InteractionSet-1.30.0, interactiveDisplayBase-1.40.0, intervals-0.15.4, IRanges-2.36.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.62.0, KEGGREST-1.42.0, LEA-3.14.0, limma-3.58.1, log4r-0.4.3, lpsymphony-1.30.0, lsa-0.73.3, lumi-2.54.0, M3Drop-1.28.0, marray-1.80.0, maSigPro-1.74.0, MassSpecWavelet-1.68.0, MatrixGenerics-1.14.0, MBA-0.1-0, MEDIPS-1.54.0, MetaboCoreUtils-1.10.0, metagenomeSeq-1.43.0, metaMA-3.1.3, metap-1.9, metapod-1.10.1, MethylSeekR-1.42.0, methylumi-2.48.0, Mfuzz-2.62.0, mia-1.10.0, minfi-1.48.0, missMethyl-1.36.0, mixOmics-6.26.0, mixsqp-0.3-54, MLInterfaces-1.82.0, MotifDb-1.44.0, motifmatchr-1.24.0, motifStack-1.46.0, MsCoreUtils-1.14.1, MsExperiment-1.4.0, MsFeatures-1.10.0, msigdbr-7.5.1, MSnbase-2.28.1, MSstats-4.10.0, MSstatsConvert-1.12.0, MSstatsLiP-1.8.1, MSstatsPTM-2.4.2, MSstatsTMT-2.10.0, MultiAssayExperiment-1.28.0, MultiDataSet-1.30.0, multtest-2.58.0, muscat-1.16.0, mutoss-0.1-13, mzID-1.40.0, mzR-2.36.0, NADA-1.6-1.1, ncdfFlow-2.48.0, NMF-0.26, NOISeq-2.46.0, numbat-1.3.2-1, oligo-1.66.0, oligoClasses-1.64.0, ontologyIndex-2.11, oompaBase-3.2.9, oompaData-3.1.3, openCyto-2.14.0, org.Hs.eg.db-3.18.0, org.Mm.eg.db-3.18.0, org.Rn.eg.db-3.18.0, OrganismDbi-1.44.0, OUTRIDER-1.20.0, pathview-1.42.0, pcaMethods-1.94.0, perm-1.0-0.4, PFAM.db-3.18.0, phyloseq-1.46.0, plyranges-1.22.0, pmp-1.14.0, polyester-1.38.0, poweRlaw-0.70.6, preprocessCore-1.64.0, pRoloc-1.42.0, pRolocdata-1.40.0, pRolocGUI-2.12.0, ProtGenerics-1.34.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.8.1, qap-0.1-2, QDNAseq-1.38.0, QFeatures-1.12.0, qlcMatrix-0.9.7, qqconf-1.3.2, quantsmooth-1.68.0, qvalue-2.34.0, R.devices-2.17.1, R.filesets-2.15.0, R.huge-0.10.1, rainbow-3.8, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.78.0, RcisTarget-1.22.0, RcppAnnoy-0.0.22, RcppHNSW-0.5.0, RcppML-0.3.7, RcppZiggurat-0.1.6, reactome.db-1.86.2, ReactomePA-1.46.0, regioneR-1.34.0, reldist-1.7-2, remaCor-0.0.16, Repitools-1.48.0, ReportingTools-2.42.3, ResidualMatrix-1.12.0, restfulr-0.0.15, Rfast-2.1.0, RFOC-3.4-10, rGADEM-2.50.0, Rgraphviz-2.46.0, rhdf5-2.46.1, rhdf5filters-1.14.1, Rhdf5lib-1.24.1, Rhtslib-2.4.1, Ringo-1.66.0, RNASeqPower-1.42.0, RnBeads-2.20.0, RnBeads.hg19-1.34.0, RnBeads.hg38-1.34.0, RnBeads.mm10-2.10.0, RnBeads.mm9-1.34.0, RnBeads.rn5-1.34.0, ROC-1.78.0, rols-2.30.0, ROntoTools-2.30.0, ropls-1.34.0, RPMG-2.2-7, RProtoBufLib-2.14.0, Rsamtools-2.18.0, RSEIS-4.1-6, Rsubread-2.16.1, rsvd-1.0.5, rtracklayer-1.62.0, Rwave-2.6-5, S4Arrays-1.2.0, S4Vectors-0.40.2, samr-3.0, SamSPECTRAL-1.56.0, SC3-1.30.0, ScaledMatrix-1.10.0, SCANVIS-1.16.0, scater-1.30.1, scattermore-1.2, scDblFinder-1.16.0, scistreer-1.2.0, scran-1.30.2, scrime-1.3.5, scuttle-1.12.0, SeqArray-1.42.0, seqLogo-1.68.0, SeqVarTools-1.40.0, seriation-1.5.4, Seurat-5.0.1, SeuratObject-5.0.1, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.3, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.8.1, ShortRead-1.60.0, siggenes-1.76.0, Signac-1.12.0, simplifyEnrichment-1.12.0, SingleCellExperiment-1.24.0, SingleR-2.4.1, sitmo-2.0.2, slingshot-2.10.0, SMVar-1.3.4, SNPRelate-1.36.0, snpStats-1.52.0, SparseArray-1.2.3, sparseMatrixStats-1.14.0, sparsesvd-0.2-2, SpatialExperiment-1.12.0, Spectra-1.12.0, SPIA-2.54.0, splancs-2.01-44, SPOTlight-1.6.7, stageR-1.24.0, struct-1.14.0, structToolbox-1.14.0, SummarizedExperiment-1.32.0, susieR-0.12.35, sva-3.50.0, TailRank-3.2.2, TFBSTools-1.40.0, TFMPvalue-0.0.9, tkWidgets-1.80.0, TrajectoryUtils-1.10.0, treeio-1.26.0, TreeSummarizedExperiment-2.10.0, TSP-1.2-4, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.30.0, UCell-2.6.2, uwot-0.1.16, variancePartition-1.32.2, VariantAnnotation-1.48.1, venn-1.12, vsn-3.70.0, waiter-0.2.5, wateRmelon-2.8.0, WGCNA-1.72-5, widgetTools-1.80.0, Wrench-1.20.0, xcms-4.0.2, XVector-0.42.0, zCompositions-1.5.0-1, zellkonverter-1.12.1, zlibbioc-1.48.0 + +### R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2 + +This is a list of extensions included in the module: + +affxparser-1.70.0, affy-1.76.0, affycoretools-1.70.0, affyio-1.68.0, AgiMicroRna-2.48.0, agricolae-1.3-5, ALDEx2-1.30.0, ALL-1.40.0, ANCOMBC-2.0.2, annaffy-1.70.0, annotate-1.76.0, AnnotationDbi-1.60.2, AnnotationFilter-1.22.0, AnnotationForge-1.40.1, AnnotationHub-3.6.0, anytime-0.3.9, aroma.affymetrix-3.2.1, aroma.apd-0.6.1, aroma.core-3.3.0, aroma.light-3.28.0, ash-1.0-15, ATACseqQC-1.22.0, AUCell-1.20.2, aws.s3-0.3.21, aws.signature-0.6.0, babelgene-22.9, ballgown-2.30.0, basilisk-1.10.2, basilisk.utils-1.10.0, batchelor-1.14.1, baySeq-2.31.0, beachmat-2.14.0, Biobase-2.58.0, BiocBaseUtils-1.0.0, BiocFileCache-2.6.1, BiocGenerics-0.44.0, BiocIO-1.8.0, BiocManager-1.30.20, BiocNeighbors-1.16.0, BiocParallel-1.32.5, BiocSingular-1.14.0, BiocStyle-2.26.0, BiocVersion-3.16.0, biomaRt-2.54.0, biomformat-1.26.0, Biostrings-2.66.0, biovizBase-1.46.0, blme-1.0-5, bluster-1.8.0, bookdown-0.33, BSgenome-1.66.3, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.5, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.34.0, bumphunter-1.40.0, ca-0.71.1, CAGEr-2.4.0, CAMERA-1.54.0, Category-2.64.0, ccdata-1.24.0, ccmap-1.24.0, CGHbase-1.58.0, CGHcall-2.60.0, ChIPpeakAnno-3.32.0, chromVAR-1.20.2, clusterProfiler-4.6.2, CNEr-1.34.0, coloc-5.1.0.1, colorRamps-2.3.1, ComplexHeatmap-2.14.0, ConsensusClusterPlus-1.62.0, conumee-1.32.0, crossmeta-1.24.0, cummeRbund-2.40.0, cytolib-2.10.1, CytoML-2.10.0, dada2-1.26.0, ddPCRclust-1.18.0, DECIPHER-2.26.0, DeconRNASeq-1.40.0, decontam-1.18.0, decoupleR-2.4.0, DEGseq-1.52.0, DelayedArray-0.24.0, DelayedMatrixStats-1.20.0, densEstBayes-1.0-2.1, derfinder-1.32.0, derfinderHelper-1.32.0, DESeq2-1.38.3, diffcyt-1.18.0, dir.expiry-1.6.0, DirichletMultinomial-1.40.0, DNABarcodes-1.28.0, DNAcopy-1.72.3, DO.db-2.9, docopt-0.7.1, DOSE-3.24.2, dqrng-0.3.0, DRIMSeq-1.26.0, DropletUtils-1.18.1, DSS-2.46.0, dupRadar-1.28.0, DynDoc-1.76.0, EBImage-4.40.0, edgeR-3.40.2, egg-0.4.5, emmeans-1.8.5, enrichplot-1.18.3, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.22.0, escape-1.8.0, estimability-1.4.1, ExperimentHub-2.6.0, extraDistr-1.9.1, fda-6.0.5, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, feature-1.2.15, fgsea-1.24.0, filelock-1.0.2, flowAI-1.28.0, flowClean-1.36.0, flowClust-3.36.0, flowCore-2.10.0, flowDensity-1.32.0, flowFP-1.56.3, flowMerge-2.46.0, flowPeaks-1.44.0, FlowSOM-2.6.0, FlowSorted.Blood.EPIC-2.2.0, FlowSorted.CordBloodCombined.450k-1.14.0, flowStats-4.10.0, flowViz-1.62.0, flowWorkspace-4.10.1, FRASER-1.10.2, fresh-0.2.0, gcrma-2.70.0, gdsfmt-1.34.0, genefilter-1.80.3, geneLenDataBase-1.34.0, geneplotter-1.76.0, GENESIS-2.28.0, GENIE3-1.20.0, GenomeInfoDb-1.34.9, GenomeInfoDbData-1.2.9, GenomicAlignments-1.34.1, GenomicFeatures-1.50.4, GenomicFiles-1.34.0, GenomicRanges-1.50.2, GenomicScores-2.10.0, GEOmap-2.5-0, GEOquery-2.66.0, ggbio-1.46.0, ggcyto-1.26.4, ggdendro-0.1.23, ggnewscale-0.4.8, ggpointdensity-0.1.0, ggrastr-1.0.1, ggseqlogo-0.1, ggthemes-4.2.4, ggtree-3.6.2, GLAD-2.62.0, Glimma-2.8.0, GlobalAncova-4.16.0, globaltest-5.52.0, GO.db-3.16.0, GOSemSim-2.24.0, goseq-1.50.0, GOstats-2.64.0, graph-1.76.0, graphite-1.44.0, GSEABase-1.60.0, gsmoothr-0.1.7, gson-0.1.0, GSVA-1.46.0, Gviz-1.42.1, GWASExactHW-1.01, GWASTools-1.44.0, HDF5Array-1.26.0, HDO.db-0.99.1, hdrcde-3.4, heatmaply-1.4.2, hgu133plus2.db-3.13.0, HiCBricks-1.16.0, HiCcompare-1.20.0, HMMcopy-1.40.0, Homo.sapiens-1.3.1, IHW-1.26.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.40.0, impute-1.72.3, InteractionSet-1.26.1, interactiveDisplayBase-1.36.0, intervals-0.15.4, IRanges-2.32.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.58.3, KEGGREST-1.38.0, LEA-3.10.2, limma-3.54.2, lpsymphony-1.26.3, lsa-0.73.3, lumi-2.50.0, M3Drop-1.24.0, marray-1.76.0, maSigPro-1.70.0, MassSpecWavelet-1.64.1, MatrixGenerics-1.10.0, MBA-0.1-0, MEDIPS-1.50.0, metagenomeSeq-1.40.0, metaMA-3.1.3, metap-1.8, metapod-1.6.0, MethylSeekR-1.38.0, methylumi-2.44.0, Mfuzz-2.58.0, mia-1.6.0, minfi-1.44.0, missMethyl-1.32.0, mixOmics-6.22.0, mixsqp-0.3-48, MLInterfaces-1.78.0, MotifDb-1.40.0, motifmatchr-1.20.0, motifStack-1.42.0, MsCoreUtils-1.10.0, MsFeatures-1.6.0, msigdbr-7.5.1, MSnbase-2.24.2, MultiAssayExperiment-1.24.0, MultiDataSet-1.26.0, multtest-2.54.0, muscat-1.12.1, mutoss-0.1-13, mzID-1.36.0, mzR-2.32.0, NADA-1.6-1.1, ncdfFlow-2.44.0, NMF-0.25, NOISeq-2.42.0, numbat-1.2.2, oligo-1.62.2, oligoClasses-1.60.0, ontologyIndex-2.10, oompaBase-3.2.9, oompaData-3.1.3, openCyto-2.10.1, org.Hs.eg.db-3.16.0, org.Mm.eg.db-3.16.0, org.Rn.eg.db-3.16.0, OrganismDbi-1.40.0, OUTRIDER-1.16.3, pathview-1.38.0, pcaMethods-1.90.0, perm-1.0-0.2, PFAM.db-3.16.0, phyloseq-1.42.0, pmp-1.10.0, polyester-1.34.0, poweRlaw-0.70.6, preprocessCore-1.60.2, pRoloc-1.38.2, pRolocdata-1.36.0, pRolocGUI-2.8.0, ProtGenerics-1.30.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.4.0, qap-0.1-2, QDNAseq-1.34.0, qlcMatrix-0.9.7, qqconf-1.3.1, quantsmooth-1.64.0, qvalue-2.30.0, R.devices-2.17.1, R.filesets-2.15.0, R.huge-0.9.0, rainbow-3.7, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.74.0, RcisTarget-1.18.2, RcppAnnoy-0.0.20, RcppHNSW-0.4.1, RcppML-0.3.7, RcppZiggurat-0.1.6, reactome.db-1.82.0, ReactomePA-1.42.0, regioneR-1.30.0, reldist-1.7-2, remaCor-0.0.11, Repitools-1.44.0, ReportingTools-2.38.0, ResidualMatrix-1.8.0, restfulr-0.0.15, Rfast-2.0.7, RFOC-3.4-6, rGADEM-2.46.0, Rgraphviz-2.42.0, rhdf5-2.42.0, rhdf5filters-1.10.0, Rhdf5lib-1.20.0, Rhtslib-2.0.0, Ringo-1.62.0, RNASeqPower-1.38.0, RnBeads-2.16.0, RnBeads.hg19-1.30.0, RnBeads.hg38-1.30.0, RnBeads.mm10-2.6.0, RnBeads.mm9-1.30.0, RnBeads.rn5-1.30.0, ROC-1.74.0, rols-2.26.0, ROntoTools-2.26.0, ropls-1.30.0, RPMG-2.2-3, RProtoBufLib-2.10.0, Rsamtools-2.14.0, RSEIS-4.1-4, Rsubread-2.12.3, rsvd-1.0.5, rtracklayer-1.58.0, Rwave-2.6-5, S4Vectors-0.36.2, samr-3.0, SamSPECTRAL-1.52.0, SC3-1.26.2, ScaledMatrix-1.6.0, SCANVIS-1.12.0, scater-1.26.1, scattermore-0.8, scDblFinder-1.12.0, scistreer-1.1.0, scran-1.26.2, scrime-1.3.5, scuttle-1.8.4, SeqArray-1.38.0, seqLogo-1.64.0, SeqVarTools-1.36.0, seriation-1.4.2, Seurat-4.3.0, SeuratObject-4.1.3, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.3, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.7.6, ShortRead-1.56.1, siggenes-1.72.0, Signac-1.9.0, simplifyEnrichment-1.8.0, SingleCellExperiment-1.20.0, SingleR-2.0.0, sitmo-2.0.2, slingshot-2.6.0, SMVar-1.3.4, SNPRelate-1.32.2, snpStats-1.48.0, sparseMatrixStats-1.10.0, sparsesvd-0.2-2, SpatialExperiment-1.8.1, SPIA-2.50.0, splancs-2.01-43, SPOTlight-1.2.0, stageR-1.20.0, struct-1.10.0, structToolbox-1.10.1, SummarizedExperiment-1.28.0, susieR-0.12.35, sva-3.46.0, TailRank-3.2.2, TFBSTools-1.36.0, TFMPvalue-0.0.9, tkWidgets-1.76.0, TrajectoryUtils-1.6.0, treeio-1.22.0, TreeSummarizedExperiment-2.6.0, TSP-1.2-3, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.26.1, UCell-2.2.0, uwot-0.1.14, variancePartition-1.28.7, VariantAnnotation-1.44.1, venn-1.11, vsn-3.66.0, waiter-0.2.5, wateRmelon-2.4.0, WGCNA-1.72-1, widgetTools-1.76.0, Wrench-1.16.0, xcms-3.20.0, XVector-0.38.0, zCompositions-1.4.0-1, zellkonverter-1.8.0, zlibbioc-1.44.0 + +### R-bundle-Bioconductor/3.15-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +affxparser-1.68.1, affy-1.74.0, affycoretools-1.68.1, affyio-1.66.0, AgiMicroRna-2.46.0, agricolae-1.3-5, ALDEx2-1.28.1, ALL-1.38.0, annaffy-1.68.0, annotate-1.74.0, AnnotationDbi-1.58.0, AnnotationFilter-1.20.0, AnnotationForge-1.38.0, AnnotationHub-3.4.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.26.0, ash-1.0-15, ATACseqQC-1.20.2, AUCell-1.18.1, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.28.0, basilisk-1.8.1, basilisk.utils-1.8.0, batchelor-1.12.3, baySeq-2.30.0, beachmat-2.12.0, Biobase-2.56.0, BiocFileCache-2.4.0, BiocGenerics-0.42.0, BiocIO-1.6.0, BiocManager-1.30.18, BiocNeighbors-1.14.0, BiocParallel-1.30.3, BiocSingular-1.12.0, BiocStyle-2.24.0, BiocVersion-3.15.2, biomaRt-2.52.0, biomformat-1.24.0, Biostrings-2.64.0, biovizBase-1.44.0, blme-1.0-5, bluster-1.6.0, bookdown-0.27, BSgenome-1.64.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.4, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.32.0, bumphunter-1.38.0, CAGEr-2.2.0, CAMERA-1.52.0, Category-2.62.0, ccdata-1.22.0, ccmap-1.22.0, CGHbase-1.56.0, CGHcall-2.58.0, ChIPpeakAnno-3.30.1, chromVAR-1.18.0, clusterProfiler-4.4.4, CNEr-1.32.0, coloc-5.1.0.1, colorRamps-2.3.1, ComplexHeatmap-2.12.0, ConsensusClusterPlus-1.60.0, conumee-1.30.0, crossmeta-1.22.1, cummeRbund-2.38.0, cytolib-2.8.0, CytoML-2.8.0, dada2-1.24.0, ddPCRclust-1.16.0, DeconRNASeq-1.38.0, DEGseq-1.50.0, DelayedArray-0.22.0, DelayedMatrixStats-1.18.0, densEstBayes-1.0-2.1, derfinder-1.30.0, derfinderHelper-1.30.0, DESeq2-1.36.0, diffcyt-1.16.0, dir.expiry-1.4.0, DirichletMultinomial-1.38.0, DNABarcodes-1.26.0, DNAcopy-1.70.0, DO.db-2.9, docopt-0.7.1, DOSE-3.22.1, dqrng-0.3.0, DRIMSeq-1.24.0, DropletUtils-1.16.0, DSS-2.44.0, dupRadar-1.26.1, DynDoc-1.74.0, EBImage-4.38.0, edgeR-3.38.1, egg-0.4.5, emmeans-1.7.5, enrichplot-1.16.2, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.20.2, estimability-1.4, ExperimentHub-2.4.0, extraDistr-1.9.1, fda-6.0.5, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, feature-1.2.15, fgsea-1.22.0, filelock-1.0.2, flowAI-1.26.0, flowClean-1.34.1, flowClust-3.34.0, flowCore-2.8.0, flowDensity-1.30.0, flowFP-1.54.0, flowMerge-2.44.0, flowPeaks-1.42.0, FlowSOM-2.4.0, FlowSorted.Blood.EPIC-2.0.0, FlowSorted.CordBloodCombined.450k-1.12.0, flowStats-4.8.0, flowViz-1.60.2, flowWorkspace-4.8.0, FRASER-1.8.1, fresh-0.2.0, gcrma-2.68.0, gdsfmt-1.32.0, genefilter-1.78.0, geneLenDataBase-1.32.0, geneplotter-1.74.0, GENESIS-2.26.0, GENIE3-1.18.0, GenomeInfoDb-1.32.2, GenomeInfoDbData-1.2.8, GenomicAlignments-1.32.0, GenomicFeatures-1.48.3, GenomicFiles-1.32.1, GenomicRanges-1.48.0, GenomicScores-2.8.2, GEOmap-2.5-0, GEOquery-2.64.2, ggbio-1.44.1, ggcyto-1.24.1, ggdendro-0.1.23, ggnewscale-0.4.7, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, ggtree-3.4.4, GLAD-2.60.0, Glimma-2.6.0, GlobalAncova-4.14.0, globaltest-5.50.0, GO.db-3.15.0, GOSemSim-2.22.0, goseq-1.48.0, GOstats-2.62.0, graph-1.74.0, graphite-1.42.0, GSEABase-1.58.0, gsmoothr-0.1.7, GSVA-1.44.2, Gviz-1.40.1, GWASExactHW-1.01, GWASTools-1.42.0, HDF5Array-1.24.1, hdrcde-3.4, heatmaply-1.3.0, hgu133plus2.db-3.13.0, HiCBricks-1.14.0, HiCcompare-1.18.0, HMMcopy-1.38.0, Homo.sapiens-1.3.1, IHW-1.24.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.38.0, impute-1.70.0, InteractionSet-1.24.0, interactiveDisplayBase-1.34.0, IRanges-2.30.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.56.0, KEGGREST-1.36.2, LEA-3.8.0, limma-3.52.2, lpsymphony-1.24.0, lsa-0.73.3, lumi-2.48.0, M3Drop-1.22.0, marray-1.74.0, maSigPro-1.68.0, MassSpecWavelet-1.62.0, MatrixGenerics-1.8.1, MBA-0.1-0, MEDIPS-1.48.0, metagenomeSeq-1.38.0, metaMA-3.1.3, metap-1.8, metapod-1.4.0, MethylSeekR-1.36.0, methylumi-2.42.0, Mfuzz-2.56.0, minfi-1.42.0, missMethyl-1.30.0, mixOmics-6.20.0, mixsqp-0.3-43, MLInterfaces-1.76.0, MotifDb-1.38.0, motifmatchr-1.18.0, motifStack-1.40.0, MsCoreUtils-1.8.0, MsFeatures-1.4.0, MSnbase-2.22.0, MultiAssayExperiment-1.22.0, MultiDataSet-1.24.0, multtest-2.52.0, muscat-1.10.1, mutoss-0.1-12, mzID-1.34.0, mzR-2.30.0, NADA-1.6-1.1, ncdfFlow-2.42.1, NMF-0.24.0, NOISeq-2.40.0, numbat-1.1.0, oligo-1.60.0, oligoClasses-1.58.0, ontologyIndex-2.7, openCyto-2.8.2, org.Hs.eg.db-3.15.0, org.Mm.eg.db-3.15.0, org.Rn.eg.db-3.15.0, OrganismDbi-1.38.1, OUTRIDER-1.14.0, pathview-1.36.0, pcaMethods-1.88.0, perm-1.0-0.2, PFAM.db-3.15.0, phyloseq-1.40.0, pmp-1.8.0, polyester-1.32.0, poweRlaw-0.70.6, preprocessCore-1.58.0, pRoloc-1.36.0, pRolocdata-1.34.0, pRolocGUI-2.6.0, ProtGenerics-1.28.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.2.0, qap-0.1-2, QDNAseq-1.32.0, qlcMatrix-0.9.7, qqconf-1.2.3, quantsmooth-1.62.0, qvalue-2.28.0, R.devices-2.17.1, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.72.0, RcisTarget-1.16.0, RcppAnnoy-0.0.19, RcppHNSW-0.3.0, RcppML-0.3.7, RcppZiggurat-0.1.6, reactome.db-1.81.0, ReactomePA-1.40.0, regioneR-1.28.0, reldist-1.7-1, Repitools-1.42.0, ReportingTools-2.36.0, ResidualMatrix-1.6.0, restfulr-0.0.15, Rfast-2.0.6, RFOC-3.4-6, rGADEM-2.44.0, Rgraphviz-2.40.0, rhdf5-2.40.0, rhdf5filters-1.8.0, Rhdf5lib-1.18.2, Rhtslib-1.28.0, Ringo-1.60.0, RNASeqPower-1.36.0, ROC-1.72.0, rols-2.24.2, ROntoTools-2.24.0, ropls-1.28.2, RPMG-2.2-3, RProtoBufLib-2.8.0, Rsamtools-2.12.0, RSEIS-4.1-4, Rsubread-2.10.4, rsvd-1.0.5, rtracklayer-1.56.1, Rwave-2.6-5, S4Vectors-0.34.0, samr-3.0, SamSPECTRAL-1.50.0, SC3-1.24.0, ScaledMatrix-1.4.0, SCANVIS-1.10.0, scater-1.24.0, scattermore-0.8, scDblFinder-1.10.0, scistreer-1.0.1, scran-1.24.0, scrime-1.3.5, scuttle-1.6.2, SeqArray-1.36.2, seqLogo-1.62.0, SeqVarTools-1.34.0, seriation-1.3.5, Seurat-4.1.1, SeuratObject-4.1.0, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.2, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.7.0, ShortRead-1.54.0, siggenes-1.70.0, Signac-1.7.0, simplifyEnrichment-1.6.1, SingleCellExperiment-1.18.0, SingleR-1.10.0, sitmo-2.0.2, SMVar-1.3.4, SNPRelate-1.30.1, snpStats-1.46.0, sparseMatrixStats-1.8.0, sparsesvd-0.2, SpatialExperiment-1.6.1, SPIA-2.48.0, splancs-2.01-43, SPOTlight-1.0.0, stageR-1.18.0, struct-1.8.0, structToolbox-1.8.0, SummarizedExperiment-1.26.1, susieR-0.12.16, sva-3.44.0, TFBSTools-1.34.0, TFMPvalue-0.0.8, tkWidgets-1.74.0, treeio-1.20.2, TSP-1.2-0, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.24.0, uwot-0.1.11, variancePartition-1.26.0, VariantAnnotation-1.42.1, venn-1.11, vsn-3.64.0, waiter-0.2.5, wateRmelon-2.2.0, WGCNA-1.71, widgetTools-1.74.0, Wrench-1.14.0, xcms-3.18.0, XVector-0.36.0, zCompositions-1.4.0-1, zellkonverter-1.6.5, zlibbioc-1.42.0 + +### R-bundle-Bioconductor/3.15-foss-2021b-R-4.2.0 + +This is a list of extensions included in the module: + +admisc-0.27, affxparser-1.68.1, affy-1.74.0, affycoretools-1.68.0, affyio-1.66.0, AgiMicroRna-2.46.0, agricolae-1.3-5, ALDEx2-1.28.0, ALL-1.38.0, annaffy-1.68.0, annotate-1.74.0, AnnotationDbi-1.58.0, AnnotationFilter-1.20.0, AnnotationForge-1.38.0, AnnotationHub-3.4.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.26.0, ash-1.0-15, ATACseqQC-1.20.2, AUCell-1.18.0, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.28.0, batchelor-1.12.0, baySeq-2.30.0, beachmat-2.12.0, Biobase-2.56.0, BiocFileCache-2.4.0, BiocGenerics-0.42.0, BiocIO-1.6.0, BiocManager-1.30.17, BiocNeighbors-1.14.0, BiocParallel-1.30.0, BiocSingular-1.12.0, BiocStyle-2.24.0, BiocVersion-3.15.2, biomaRt-2.52.0, biomformat-1.24.0, Biostrings-2.64.0, biovizBase-1.44.0, blme-1.0-5, bluster-1.6.0, bookdown-0.26, BSgenome-1.64.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.4, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.32.0, bumphunter-1.38.0, CAGEr-2.2.0, CAMERA-1.52.0, Category-2.62.0, ccdata-1.22.0, ccmap-1.22.0, CGHbase-1.56.0, CGHcall-2.58.0, ChIPpeakAnno-3.30.0, chromVAR-1.18.0, CNEr-1.32.0, coloc-5.1.0, colorRamps-2.3.1, ComplexHeatmap-2.12.0, ConsensusClusterPlus-1.60.0, conumee-1.30.0, crossmeta-1.22.0, cummeRbund-2.38.0, cytolib-2.8.0, CytoML-2.8.0, dada2-1.24.0, DeconRNASeq-1.38.0, DEGseq-1.50.0, DelayedArray-0.22.0, DelayedMatrixStats-1.18.0, densEstBayes-1.0-2.1, derfinder-1.30.0, derfinderHelper-1.30.0, DESeq2-1.36.0, diffcyt-1.16.0, DirichletMultinomial-1.38.0, DNABarcodes-1.26.0, DNAcopy-1.70.0, docopt-0.7.1, dqrng-0.3.0, DRIMSeq-1.24.0, DropletUtils-1.16.0, DSS-2.44.0, dupRadar-1.26.0, DynDoc-1.74.0, EBImage-4.38.0, edgeR-3.38.0, egg-0.4.5, emmeans-1.7.3, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.20.1, estimability-1.3, ExperimentHub-2.4.0, extraDistr-1.9.1, fda-6.0.3, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.22.0, filelock-1.0.2, flowClust-3.34.0, flowCore-2.8.0, FlowSOM-2.4.0, FlowSorted.Blood.EPIC-2.0.0, FlowSorted.CordBloodCombined.450k-1.12.0, flowStats-4.8.0, flowViz-1.60.0, flowWorkspace-4.8.0, FRASER-1.8.0, fresh-0.2.0, gcrma-2.68.0, gdsfmt-1.32.0, genefilter-1.78.0, geneLenDataBase-1.32.0, geneplotter-1.74.0, GENESIS-2.26.0, GENIE3-1.18.0, GenomeInfoDb-1.32.1, GenomeInfoDbData-1.2.8, GenomicAlignments-1.32.0, GenomicFeatures-1.48.0, GenomicFiles-1.32.0, GenomicRanges-1.48.0, GenomicScores-2.8.0, GEOquery-2.64.0, ggbio-1.44.0, ggcyto-1.24.0, ggdendro-0.1.23, ggnewscale-0.4.7, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.60.0, Glimma-2.6.0, GlobalAncova-4.14.0, globaltest-5.50.0, GO.db-3.15.0, goseq-1.48.0, GOstats-2.62.0, graph-1.74.0, GSEABase-1.58.0, gsmoothr-0.1.7, GSVA-1.44.0, Gviz-1.40.0, GWASExactHW-1.01, GWASTools-1.42.0, HDF5Array-1.24.0, hdrcde-3.4, heatmaply-1.3.0, hgu133plus2.db-3.13.0, HiCcompare-1.18.0, HMMcopy-1.38.0, Homo.sapiens-1.3.1, IHW-1.24.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.1, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.38.0, impute-1.70.0, InteractionSet-1.24.0, interactiveDisplayBase-1.34.0, IRanges-2.30.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.56.0, KEGGREST-1.36.0, LEA-3.8.0, limma-3.52.0, lpsymphony-1.24.0, lsa-0.73.2, lumi-2.48.0, M3Drop-1.22.0, marray-1.74.0, maSigPro-1.68.0, MassSpecWavelet-1.62.0, MatrixGenerics-1.8.0, MEDIPS-1.48.0, metagenomeSeq-1.38.0, metaMA-3.1.3, metap-1.8, metapod-1.4.0, MethylSeekR-1.36.0, methylumi-2.42.0, Mfuzz-2.56.0, minfi-1.42.0, missMethyl-1.30.0, mixOmics-6.20.0, mixsqp-0.3-43, MLInterfaces-1.76.0, MotifDb-1.38.0, motifmatchr-1.18.0, motifStack-1.40.0, MsCoreUtils-1.8.0, MsFeatures-1.4.0, MSnbase-2.22.0, MultiAssayExperiment-1.22.0, MultiDataSet-1.24.0, multtest-2.52.0, muscat-1.10.0, mutoss-0.1-12, mzID-1.34.0, mzR-2.30.0, NADA-1.6-1.1, ncdfFlow-2.42.0, NMF-0.24.0, NOISeq-2.40.0, oligo-1.60.0, oligoClasses-1.58.0, ontologyIndex-2.7, openCyto-2.8.0, org.Hs.eg.db-3.15.0, org.Mm.eg.db-3.15.0, org.Rn.eg.db-3.15.0, OrganismDbi-1.38.0, OUTRIDER-1.14.0, pathview-1.36.0, pcaMethods-1.88.0, perm-1.0-0.2, PFAM.db-3.15.0, phyloseq-1.40.0, pmp-1.8.0, polyester-1.32.0, poweRlaw-0.70.6, preprocessCore-1.58.0, pRoloc-1.36.0, pRolocdata-1.34.0, pRolocGUI-2.6.0, ProtGenerics-1.28.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.2.0, qap-0.1-1, QDNAseq-1.32.0, qlcMatrix-0.9.7, qqconf-1.2.3, quantsmooth-1.62.0, qvalue-2.28.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.72.0, RcisTarget-1.16.0, RcppAnnoy-0.0.19, RcppHNSW-0.3.0, RcppML-0.3.7, RcppZiggurat-0.1.6, regioneR-1.28.0, reldist-1.7-0, Repitools-1.42.0, ReportingTools-2.36.0, ResidualMatrix-1.6.0, restfulr-0.0.13, Rfast-2.0.6, rGADEM-2.44.0, Rgraphviz-2.40.0, rhdf5-2.40.0, rhdf5filters-1.8.0, Rhdf5lib-1.18.0, RhpcBLASctl-0.21-247.1, Rhtslib-1.28.0, Ringo-1.60.0, RNASeqPower-1.36.0, ROC-1.72.0, rols-2.24.0, ROntoTools-2.24.0, ropls-1.28.0, RProtoBufLib-2.8.0, Rsamtools-2.12.0, Rsubread-2.10.0, rsvd-1.0.5, rtracklayer-1.56.0, S4Vectors-0.34.0, samr-3.0, SC3-1.24.0, ScaledMatrix-1.4.0, SCANVIS-1.10.0, scater-1.24.0, scattermore-0.8, scDblFinder-1.10.0, scran-1.24.0, scrime-1.3.5, scuttle-1.6.0, SeqArray-1.36.0, seqLogo-1.62.0, SeqVarTools-1.34.0, seriation-1.3.5, Seurat-4.1.1, SeuratObject-4.1.0, shinyBS-0.61.1, shinydashboardPlus-2.0.3, shinyFiles-0.9.1, shinyhelper-0.3.2, shinypanel-0.1.5, shinyWidgets-0.6.4, ShortRead-1.54.0, siggenes-1.70.0, Signac-1.6.0, SingleCellExperiment-1.18.0, SingleR-1.10.0, sitmo-2.0.2, SMVar-1.3.4, SNPRelate-1.30.0, snpStats-1.46.0, sparseMatrixStats-1.8.0, sparsesvd-0.2, SPIA-2.48.0, SPOTlight-1.0.0, stageR-1.18.0, struct-1.8.0, structToolbox-1.8.0, SummarizedExperiment-1.26.1, susieR-0.11.92, sva-3.44.0, TFBSTools-1.34.0, TFMPvalue-0.0.8, tkWidgets-1.74.0, TSP-1.2-0, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.24.0, uwot-0.1.11, variancePartition-1.26.0, VariantAnnotation-1.42.0, venn-1.10, vsn-3.64.0, waiter-0.2.5, wateRmelon-2.2.0, WGCNA-1.71, widgetTools-1.74.0, Wrench-1.14.0, xcms-3.18.0, XVector-0.36.0, zCompositions-1.4.0-1, zlibbioc-1.42.0 + +### R-bundle-Bioconductor/3.14-foss-2021b-R-4.1.2 + +This is a list of extensions included in the module: + +admisc-0.19, affxparser-1.66.0, affy-1.72.0, affycoretools-1.66.0, affyio-1.64.0, AgiMicroRna-2.44.0, agricolae-1.3-5, ALDEx2-1.26.0, ALL-1.36.0, annaffy-1.66.0, annotate-1.72.0, AnnotationDbi-1.56.1, AnnotationFilter-1.18.0, AnnotationForge-1.36.0, AnnotationHub-3.2.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.24.0, ash-1.0-15, ATACseqQC-1.18.0, AUCell-1.16.0, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.26.0, batchelor-1.10.0, baySeq-2.28.0, beachmat-2.10.0, Biobase-2.54.0, BiocFileCache-2.2.0, BiocGenerics-0.40.0, BiocIO-1.4.0, BiocManager-1.30.16, BiocNeighbors-1.12.0, BiocParallel-1.28.0, BiocSingular-1.10.0, BiocStyle-2.22.0, BiocVersion-3.14.0, biomaRt-2.50.0, biomformat-1.22.0, Biostrings-2.62.0, biovizBase-1.42.0, blme-1.0-5, bluster-1.4.0, bookdown-0.24, BSgenome-1.62.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.4, BSgenome.Mmusculus.UCSC.mm10-1.4.3, bsseq-1.30.0, bumphunter-1.36.0, CAMERA-1.50.0, Category-2.60.0, ccdata-1.20.0, ccmap-1.20.0, CGHbase-1.54.0, ChIPpeakAnno-3.28.0, chromVAR-1.16.0, CNEr-1.30.0, coloc-5.1.0, colorRamps-2.3, ComplexHeatmap-2.10.0, ConsensusClusterPlus-1.58.0, conumee-1.28.0, crossmeta-1.20.0, cummeRbund-2.36.0, cytolib-2.6.0, CytoML-2.6.0, dada2-1.22.0, DeconRNASeq-1.36.0, DEGseq-1.48.0, DelayedArray-0.20.0, DelayedMatrixStats-1.16.0, derfinder-1.28.0, derfinderHelper-1.28.0, DESeq2-1.34.0, diffcyt-1.14.0, DirichletMultinomial-1.36.0, DNABarcodes-1.24.0, DNAcopy-1.68.0, docopt-0.7.1, dqrng-0.3.0, DRIMSeq-1.22.0, DropletUtils-1.14.0, DSS-2.42.0, dupRadar-1.24.0, DynDoc-1.72.0, EBImage-4.36.0, edgeR-3.36.0, egg-0.4.5, emmeans-1.7.0, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v79-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.18.0, estimability-1.3, ExperimentHub-2.2.0, extraDistr-1.9.1, fda-5.5.0, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.20.0, filelock-1.0.2, flowClust-3.32.0, flowCore-2.6.0, FlowSOM-2.2.0, FlowSorted.Blood.EPIC-1.12.1, FlowSorted.CordBloodCombined.450k-1.10.0, flowStats-4.6.0, flowViz-1.58.0, flowWorkspace-4.6.0, FRASER-1.6.0, fresh-0.2.0, gcrma-2.66.0, gdsfmt-1.30.0, GenABEL-1.8-0, GenABEL.data-1.0.0, genefilter-1.76.0, geneLenDataBase-1.30.0, geneplotter-1.72.0, GENESIS-2.24.0, GENIE3-1.16.0, GenomeInfoDb-1.30.0, GenomeInfoDbData-1.2.7, GenomicAlignments-1.30.0, GenomicFeatures-1.46.1, GenomicFiles-1.30.0, GenomicRanges-1.46.0, GenomicScores-2.6.0, GEOquery-2.62.0, ggbio-1.41.0, ggcyto-1.22.0, ggdendro-0.1.22, ggnewscale-0.4.5, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.58.0, Glimma-2.4.0, GlobalAncova-4.12.0, globaltest-5.48.0, GO.db-3.14.0, goseq-1.46.0, GOstats-2.60.0, graph-1.72.0, GSEABase-1.56.0, gsmoothr-0.1.7, GSVA-1.42.0, Gviz-1.38.0, GWASExactHW-1.01, GWASTools-1.40.0, HDF5Array-1.22.0, hdrcde-3.4, heatmaply-1.3.0, hgu133plus2.db-3.13.0, HMMcopy-1.36.0, Homo.sapiens-1.3.1, IHW-1.22.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.36.0, impute-1.68.0, InteractionSet-1.22.0, interactiveDisplayBase-1.32.0, IRanges-2.28.0, isva-1.9, JASPAR2020-0.99.10, KEGGgraph-1.54.0, KEGGREST-1.34.0, LEA-3.6.0, limma-3.50.0, lpsymphony-1.22.0, lsa-0.73.2, lumi-2.46.0, M3Drop-1.20.0, marray-1.72.0, maSigPro-1.66.0, MassSpecWavelet-1.60.0, mathjaxr-1.4-0, MatrixGenerics-1.6.0, MEDIPS-1.46.0, metagenomeSeq-1.36.0, metaMA-3.1.2, metap-1.5, metapod-1.2.0, MethylSeekR-1.34.0, methylumi-2.39.0, Mfuzz-2.54.0, minfi-1.40.0, missMethyl-1.28.0, mixOmics-6.17.26, mixsqp-0.3-43, MLInterfaces-1.74.0, MotifDb-1.36.0, motifmatchr-1.16.0, motifStack-1.38.0, MsCoreUtils-1.6.0, MsFeatures-1.2.0, MSnbase-2.20.0, MultiDataSet-1.22.0, multtest-2.50.0, muscat-1.8.0, mutoss-0.1-12, mzID-1.32.0, mzR-2.28.0, NADA-1.6-1.1, ncdfFlow-2.40.0, NMF-0.23.0, NOISeq-2.38.0, oligo-1.58.0, oligoClasses-1.56.0, ontologyIndex-2.7, openCyto-2.6.0, org.Hs.eg.db-3.14.0, org.Mm.eg.db-3.14.0, org.Rn.eg.db-3.14.0, OrganismDbi-1.36.0, OUTRIDER-1.12.0, pathview-1.34.0, pcaMethods-1.86.0, perm-1.0-0.2, PFAM.db-3.14.0, phyloseq-1.38.0, pmp-1.6.0, polyester-1.30.0, poweRlaw-0.70.6, preprocessCore-1.56.0, pRoloc-1.34.0, pRolocdata-1.32.0, pRolocGUI-2.4.0, ProtGenerics-1.26.0, PRROC-1.3.1, PSCBS-0.66.0, PureCN-2.0.0, qap-0.1-1, qlcMatrix-0.9.7, quantsmooth-1.60.0, qvalue-2.26.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.70.0, RcisTarget-1.14.0, RcppAnnoy-0.0.19, RcppHNSW-0.3.0, RcppZiggurat-0.1.6, regioneR-1.26.0, reldist-1.6-6, Repitools-1.40.0, ReportingTools-2.34.0, ResidualMatrix-1.4.0, restfulr-0.0.13, Rfast-2.0.3, rGADEM-2.42.0, Rgraphviz-2.38.0, rhdf5-2.38.0, rhdf5filters-1.6.0, Rhdf5lib-1.16.0, Rhtslib-1.26.0, Ringo-1.58.0, RNASeqPower-1.34.0, ROC-1.70.0, rols-2.22.0, ropls-1.26.0, RProtoBufLib-2.6.0, Rsamtools-2.10.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.8.0, rsvd-1.0.5, rtracklayer-1.54.0, S4Vectors-0.32.0, samr-3.0, SC3-1.22.0, ScaledMatrix-1.2.0, SCANVIS-1.7.0, scater-1.22.0, scattermore-0.7, scran-1.22.0, scrime-1.3.5, sctransform-0.3.2, scuttle-1.4.0, SeqArray-1.34.0, seqLogo-1.60.0, SeqVarTools-1.32.0, seriation-1.3.1, Seurat-4.0.5, SeuratObject-4.0.2, shinyBS-0.61, shinydashboardPlus-2.0.3, shinyFiles-0.9.0, shinyhelper-0.3.2, shinypanel-0.1.4, shinyWidgets-0.6.2, ShortRead-1.52.0, siggenes-1.68.0, Signac-1.4.0, SingleCellExperiment-1.16.0, SingleR-1.8.0, sitmo-2.0.2, SMVar-1.3.3, SNPRelate-1.28.0, snpStats-1.44.0, sparseMatrixStats-1.6.0, sparsesvd-0.2, SPIA-2.46.0, stageR-1.16.0, struct-1.6.0, structToolbox-1.6.0, SummarizedExperiment-1.24.0, susieR-0.11.42, sva-3.42.0, TFBSTools-1.32.0, TFMPvalue-0.0.8, tkWidgets-1.72.0, truncnorm-1.0-8, TSP-1.1-11, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.22.0, uwot-0.1.10, variancePartition-1.24.0, VariantAnnotation-1.40.0, venn-1.10, vsn-3.62.0, waiter-0.2.4, wateRmelon-2.0.0, WGCNA-1.70-3, widgetTools-1.72.0, Wrench-1.12.0, xcms-3.16.0, XVector-0.34.0, zCompositions-1.3.4, zlibbioc-1.40.0 + +### R-bundle-Bioconductor/3.13-foss-2021a-R-4.1.0 + +This is a list of extensions included in the module: + +admisc-0.15, affxparser-1.64.0, affy-1.70.0, affycoretools-1.64.0, affyio-1.62.0, AgiMicroRna-2.42.0, agricolae-1.3-3, ALDEx2-1.24.0, ALL-1.34.0, annaffy-1.63.1, annotate-1.70.0, AnnotationDbi-1.54.0, AnnotationFilter-1.16.0, AnnotationForge-1.34.0, AnnotationHub-3.0.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.22.0, ash-1.0-15, ATACseqQC-1.16.0, AUCell-1.14.0, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.24.0, batchelor-1.8.0, baySeq-2.26.0, beachmat-2.8.0, Biobase-2.52.0, BiocFileCache-2.0.0, BiocGenerics-0.38.0, BiocIO-1.2.0, BiocManager-1.30.15, BiocNeighbors-1.10.0, BiocParallel-1.26.0, BiocSingular-1.8.0, BiocStyle-2.20.0, BiocVersion-3.13.1, biomaRt-2.48.0, biomformat-1.20.0, Biostrings-2.60.0, biovizBase-1.40.0, blme-1.0-5, bluster-1.2.1, bookdown-0.22, BSgenome-1.60.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.3, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.34.0, CAMERA-1.48.0, Category-2.58.0, ccdata-1.18.0, ccmap-1.18.0, CGHbase-1.52.0, ChIPpeakAnno-3.26.0, CNEr-1.28.0, coloc-3.2-1, colorRamps-2.3, ComplexHeatmap-2.8.0, ConsensusClusterPlus-1.56.0, conumee-1.26.0, crossmeta-1.18.0, cummeRbund-2.34.0, cytolib-2.4.0, CytoML-2.4.0, dada2-1.20.0, DeconRNASeq-1.34.0, DEGseq-1.46.0, DelayedArray-0.18.0, DelayedMatrixStats-1.14.0, derfinder-1.26.0, derfinderHelper-1.26.0, DESeq2-1.32.0, diffcyt-1.12.0, DirichletMultinomial-1.34.0, DNAcopy-1.66.0, docopt-0.7.1, dqrng-0.3.0, DRIMSeq-1.20.0, DropletUtils-1.12.1, dupRadar-1.22.0, DynDoc-1.70.0, EBImage-4.34.0, edgeR-3.34.0, egg-0.4.5, emmeans-1.6.1, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.16.0, estimability-1.3, ExperimentHub-2.0.0, extraDistr-1.9.1, fda-5.1.9, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.18.0, filelock-1.0.2, flowClust-3.30.0, flowCore-2.4.0, FlowSOM-2.0.0, FlowSorted.Blood.EPIC-1.10.1, FlowSorted.CordBloodCombined.450k-1.8.0, flowStats-4.4.0, flowViz-1.56.0, flowWorkspace-4.4.0, FRASER-1.4.0, fresh-0.2.0, gcrma-2.64.0, gdsfmt-1.28.0, GenABEL-1.8-0, GenABEL.data-1.0.0, genefilter-1.74.0, geneLenDataBase-1.28.0, geneplotter-1.70.0, GENESIS-2.22.0, GENIE3-1.14.0, GenomeInfoDb-1.28.0, GenomeInfoDbData-1.2.6, GenomicAlignments-1.28.0, GenomicFeatures-1.44.0, GenomicFiles-1.28.0, GenomicRanges-1.44.0, GenomicScores-2.4.0, GEOquery-2.60.0, ggbio-1.40.0, ggcyto-1.20.0, ggdendro-0.1.22, ggnewscale-0.4.5, ggpointdensity-0.1.0, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.56.0, Glimma-2.2.0, GlobalAncova-4.10.0, globaltest-5.46.0, GO.db-3.13.0, goseq-1.44.0, GOstats-2.58.0, graph-1.70.0, GSEABase-1.54.0, gsmoothr-0.1.7, GSVA-1.40.0, Gviz-1.36.1, GWASExactHW-1.01, GWASTools-1.38.0, HDF5Array-1.20.0, hdrcde-3.4, heatmaply-1.2.1, hgu133plus2.db-3.13.0, HMMcopy-1.34.0, Homo.sapiens-1.3.1, IHW-1.20.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.34.0, impute-1.66.0, InteractionSet-1.20.0, interactiveDisplayBase-1.30.0, IRanges-2.26.0, isva-1.9, JASPAR2020-0.99.10, KEGG.db-3.2.4, KEGGgraph-1.52.0, KEGGREST-1.32.0, LEA-3.4.0, limma-3.48.0, lpsymphony-1.20.0, lsa-0.73.2, lumi-2.44.0, marray-1.70.0, maSigPro-1.64.0, MassSpecWavelet-1.58.0, mathjaxr-1.4-0, MatrixGenerics-1.4.0, MEDIPS-1.44.0, metagenomeSeq-1.34.0, metaMA-3.1.2, metap-1.4, metapod-1.0.0, MethylSeekR-1.32.0, methylumi-2.38.0, Mfuzz-2.52.0, minfi-1.38.0, missMethyl-1.26.0, mixOmics-6.16.0, MLInterfaces-1.72.0, MotifDb-1.34.0, motifmatchr-1.14.0, motifStack-1.36.0, MsCoreUtils-1.4.0, MSnbase-2.18.0, MultiDataSet-1.20.0, multtest-2.48.0, muscat-1.6.0, mutoss-0.1-12, mzID-1.30.0, mzR-2.26.0, NADA-1.6-1.1, ncdfFlow-2.38.0, NMF-0.23.0, NOISeq-2.36.0, oligo-1.56.0, oligoClasses-1.54.0, ontologyIndex-2.7, openCyto-2.4.0, org.Hs.eg.db-3.13.0, org.Mm.eg.db-3.13.0, org.Rn.eg.db-3.13.0, OrganismDbi-1.34.0, OUTRIDER-1.10.0, pcaMethods-1.84.0, perm-1.0-0.0, PFAM.db-3.13.0, phyloseq-1.36.0, pmp-1.4.0, polyester-1.28.0, poweRlaw-0.70.6, preprocessCore-1.54.0, pRoloc-1.32.0, pRolocdata-1.30.0, pRolocGUI-2.2.0, ProtGenerics-1.24.0, PRROC-1.3.1, PSCBS-0.65.0, PureCN-1.22.1, qap-0.1-1, qlcMatrix-0.9.7, quantsmooth-1.58.0, qvalue-2.24.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.68.0, RcisTarget-1.12.0, RcppAnnoy-0.0.18, RcppHNSW-0.3.0, RcppZiggurat-0.1.6, regioneR-1.24.0, Repitools-1.38.0, ReportingTools-2.32.0, ResidualMatrix-1.2.0, restfulr-0.0.13, Rfast-2.0.3, rGADEM-2.40.0, Rgraphviz-2.36.0, rhdf5-2.36.0, rhdf5filters-1.4.0, Rhdf5lib-1.14.0, Rhtslib-1.24.0, Ringo-1.56.0, RNASeqPower-1.32.0, ROC-1.68.0, ropls-1.24.0, RProtoBufLib-2.4.0, Rsamtools-2.8.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.6.1, rsvd-1.0.5, rtracklayer-1.52.0, S4Vectors-0.30.0, samr-3.0, SC3-1.20.0, ScaledMatrix-1.0.0, SCANVIS-1.6.0, scater-1.20.0, scattermore-0.7, scran-1.20.1, scrime-1.3.5, sctransform-0.3.2, scuttle-1.2.0, SeqArray-1.32.0, seqLogo-1.58.0, SeqVarTools-1.30.0, seriation-1.2-9, Seurat-4.0.3, SeuratObject-4.0.2, shinyBS-0.61, shinydashboardPlus-2.0.1, shinyFiles-0.9.0, shinyhelper-0.3.2, shinypanel-0.1.4, shinyWidgets-0.6.0, ShortRead-1.50.0, siggenes-1.66.0, Signac-1.2.1, SingleCellExperiment-1.14.1, SingleR-1.6.1, sitmo-2.0.1, SMVar-1.3.3, SNPRelate-1.26.0, snpStats-1.42.0, sparseMatrixStats-1.4.0, sparsesvd-0.2, SPIA-2.44.0, stageR-1.14.0, struct-1.4.0, structToolbox-1.4.0, SummarizedExperiment-1.22.0, sva-3.40.0, TFBSTools-1.30.0, TFMPvalue-0.0.8, tkWidgets-1.70.0, truncnorm-1.0-8, TSP-1.1-10, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.20.0, uwot-0.1.10, variancePartition-1.22.0, VariantAnnotation-1.38.0, venn-1.10, vsn-3.60.0, waiter-0.2.1, wateRmelon-1.36.0, widgetTools-1.70.0, Wrench-1.10.0, xcms-3.14.0, XVector-0.32.0, zCompositions-1.3.4, zlibbioc-1.38.0 + +### R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: + +admisc-0.11, affxparser-1.62.0, affy-1.68.0, affycoretools-1.62.0, affyio-1.60.0, AgiMicroRna-2.40.0, agricolae-1.3-3, ALDEx2-1.22.0, ALL-1.32.0, annaffy-1.62.0, annotate-1.68.0, AnnotationDbi-1.52.0, AnnotationFilter-1.14.0, AnnotationForge-1.32.0, AnnotationHub-2.22.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.2, aroma.light-3.20.0, ash-1.0-15, ATACseqQC-1.14.4, aws.s3-0.3.21, aws.signature-0.6.0, ballgown-2.22.0, batchelor-1.6.2, baySeq-2.24.0, beachmat-2.6.4, BH-1.75.0-0, Biobase-2.50.0, BiocFileCache-1.14.0, BiocGenerics-0.36.0, BiocManager-1.30.10, BiocNeighbors-1.8.2, BiocParallel-1.24.1, BiocSingular-1.6.0, BiocStyle-2.18.1, BiocVersion-3.12.0, biomaRt-2.46.3, biomformat-1.18.0, Biostrings-2.58.0, biovizBase-1.38.0, blme-1.0-5, bluster-1.0.0, bookdown-0.21, BSgenome-1.58.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.3, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.32.0, CAMERA-1.46.0, Category-2.56.0, ccdata-1.16.0, ccmap-1.16.0, CGHbase-1.50.0, ChIPpeakAnno-3.24.1, CNEr-1.26.0, coloc-3.2-1, colorRamps-2.3, ComplexHeatmap-2.6.2, ConsensusClusterPlus-1.54.0, conumee-1.24.0, crossmeta-1.16.1, cummeRbund-2.32.0, cytolib-2.2.1, CytoML-2.2.1, dada2-1.18.0, DeconRNASeq-1.32.0, DEGseq-1.44.0, DelayedArray-0.16.1, DelayedMatrixStats-1.12.3, derfinder-1.24.2, derfinderHelper-1.24.1, DESeq2-1.30.0, diffcyt-1.10.0, DirichletMultinomial-1.32.0, DNAcopy-1.64.0, dqrng-0.2.1, DRIMSeq-1.18.0, DropletUtils-1.10.3, dupRadar-1.20.0, DynDoc-1.68.0, EBImage-4.32.0, edgeR-3.32.1, egg-0.4.5, emmeans-1.5.4, EnsDb.Hsapiens.v75-2.99.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.14.0, estimability-1.3, ExperimentHub-1.16.0, extraDistr-1.9.1, fda-5.1.9, FDb.InfiniumMethylation.hg19-2.2.0, fds-1.8, fgsea-1.16.0, flowClust-3.28.0, flowCore-2.2.0, FlowSOM-1.22.0, FlowSorted.Blood.EPIC-1.8.0, FlowSorted.CordBloodCombined.450k-1.6.0, flowStats-4.2.0, flowViz-1.54.0, flowWorkspace-4.2.0, FRASER-1.2.1, gcrma-2.62.0, gdsfmt-1.26.1, GenABEL-1.8-0, GenABEL.data-1.0.0, genefilter-1.72.1, geneLenDataBase-1.26.0, geneplotter-1.68.0, GENESIS-2.20.1, GENIE3-1.12.0, GenomeInfoDb-1.26.2, GenomeInfoDbData-1.2.4, GenomicAlignments-1.26.0, GenomicFeatures-1.42.1, GenomicFiles-1.26.0, GenomicRanges-1.42.0, GenomicScores-2.2.0, genoset-1.45.1, GEOquery-2.58.0, ggbio-1.38.0, ggcyto-1.18.0, ggdendro-0.1.22, ggseqlogo-0.1, ggthemes-4.2.4, GLAD-2.54.0, Glimma-2.0.0, GlobalAncova-4.8.0, globaltest-5.44.0, GO.db-3.12.1, goseq-1.42.0, GOstats-2.56.0, graph-1.68.0, GSEABase-1.52.1, gsmoothr-0.1.7, GSVA-1.38.2, Gviz-1.34.0, GWASExactHW-1.01, GWASTools-1.36.0, HDF5Array-1.18.1, hdrcde-3.4, heatmaply-1.2.1, hgu133plus2.db-3.2.3, HMMcopy-1.32.0, Homo.sapiens-1.3.1, IHW-1.18.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.32.0, impute-1.64.0, interactiveDisplayBase-1.28.0, IRanges-2.24.1, isva-1.9, KEGG.db-3.2.4, KEGGgraph-1.50.0, KEGGprofile-1.32.0, KEGGREST-1.30.1, LEA-3.2.0, limma-3.46.0, lpsymphony-1.18.0, lsa-0.73.2, lumi-2.42.0, marray-1.68.0, maSigPro-1.62.0, MassSpecWavelet-1.56.0, mathjaxr-1.2-0, MatrixGenerics-1.2.0, MEDIPS-1.42.0, metagenomeSeq-1.32.0, metaMA-3.1.2, metap-1.4, MethylSeekR-1.30.0, methylumi-2.36.0, Mfuzz-2.50.0, minfi-1.36.0, missMethyl-1.24.0, mixOmics-6.14.0, MLInterfaces-1.70.0, MotifDb-1.32.0, motifmatchr-1.12.0, motifStack-1.34.0, MsCoreUtils-1.2.0, MSnbase-2.16.1, MultiDataSet-1.18.1, multtest-2.46.0, muscat-1.4.0, mutoss-0.1-12, mzID-1.28.0, mzR-2.24.1, NADA-1.6-1.1, ncdf4-1.17, ncdfFlow-2.36.0, NOISeq-2.34.0, oligo-1.54.1, oligoClasses-1.52.0, ontologyIndex-2.7, openCyto-2.2.0, org.Hs.eg.db-3.12.0, org.Mm.eg.db-3.12.0, org.Rn.eg.db-3.12.0, OrganismDbi-1.32.0, OUTRIDER-1.8.0, pcaMethods-1.82.0, perm-1.0-0.0, PFAM.db-3.12.0, phyloseq-1.34.0, pmp-1.2.0, polyester-1.26.0, poweRlaw-0.70.6, preprocessCore-1.52.1, pRoloc-1.30.0, pRolocdata-1.28.0, pRolocGUI-2.0.0, ProtGenerics-1.22.0, PRROC-1.3.1, PSCBS-0.65.0, PureCN-1.20.0, qap-0.1-1, quantsmooth-1.56.0, qvalue-2.22.0, R.devices-2.17.0, R.filesets-2.14.0, R.huge-0.9.0, rainbow-3.6, randomcoloR-1.1.0.1, rARPACK-0.11-0, RBGL-1.66.0, RcppAnnoy-0.0.18, RcppHNSW-0.3.0, RcppZiggurat-0.1.6, regioneR-1.22.0, Repitools-1.36.0, ReportingTools-2.30.0, ResidualMatrix-1.0.0, Rfast-2.0.1, rGADEM-2.38.0, Rgraphviz-2.34.0, rhdf5-2.34.0, rhdf5filters-1.2.0, Rhdf5lib-1.12.1, Rhtslib-1.22.0, Ringo-1.54.0, RNASeqPower-1.30.0, ROC-1.66.0, ropls-1.22.0, RProtoBufLib-2.2.0, Rsamtools-2.6.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.4.2, rsvd-1.0.3, rtracklayer-1.50.0, S4Vectors-0.28.1, samr-3.0, SC3-1.18.0, SCANVIS-1.4.0, scater-1.18.3, scattermore-0.7, scran-1.18.5, scrime-1.3.5, sctransform-0.3.2, scuttle-1.0.4, SeqArray-1.30.0, seqLogo-1.56.0, SeqVarTools-1.28.1, seriation-1.2-9, Seurat-4.0.0, SeuratObject-4.0.0, shinyBS-0.61, shinydashboardPlus-0.7.5, shinyFiles-0.9.0, shinyhelper-0.3.2, shinypanel-0.1.4, shinyWidgets-0.5.7, ShortRead-1.48.0, siggenes-1.64.0, Signac-1.1.1, SingleCellExperiment-1.12.0, SingleR-1.4.1, sitmo-2.0.1, SMVar-1.3.3, SNPRelate-1.24.0, snpStats-1.40.0, sparseMatrixStats-1.2.1, SPIA-2.42.0, SSPA-2.30.0, stageR-1.12.0, struct-1.2.0, structToolbox-1.2.0, SummarizedExperiment-1.20.0, sva-3.38.0, TFBSTools-1.28.0, TFMPvalue-0.0.8, tkWidgets-1.68.0, truncnorm-1.0-8, TSP-1.1-10, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.18.0, uwot-0.1.10, variancePartition-1.20.0, VariantAnnotation-1.36.0, venn-1.9, vsn-3.58.0, wateRmelon-1.34.0, widgetTools-1.68.0, Wrench-1.8.0, xcms-3.12.0, xgboost-1.3.2.1, XVector-0.30.0, zCompositions-1.3.4, zlibbioc-1.36.0 + +### R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0 + +This is a list of extensions included in the module: + +admisc-0.8, affxparser-1.60.0, affy-1.66.0, affycoretools-1.60.0, affyio-1.58.0, AgiMicroRna-2.38.0, ALDEx2-1.20.0, ALL-1.30.0, annaffy-1.60.0, annotate-1.66.0, AnnotationDbi-1.50.0, AnnotationFilter-1.12.0, AnnotationForge-1.30.1, AnnotationHub-2.20.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.1, aroma.light-3.18.0, ATACseqQC-1.12.0, ballgown-2.20.0, batchelor-1.4.0, baySeq-2.22.0, beachmat-2.4.0, Biobase-2.48.0, BiocFileCache-1.12.0, BiocGenerics-0.34.0, BiocManager-1.30.10, BiocNeighbors-1.6.0, BiocParallel-1.22.0, BiocSingular-1.4.0, BiocVersion-3.11.1, biomaRt-2.44.0, biomformat-1.16.0, Biostrings-2.56.0, biovizBase-1.36.0, blme-1.0-4, BSgenome-1.56.0, BSgenome.Cfamiliaris.UCSC.canFam3-1.4.0, BSgenome.Hsapiens.UCSC.hg19-1.4.3, BSgenome.Hsapiens.UCSC.hg38-1.4.3, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.30.0, CAMERA-1.44.0, Category-2.54.0, ccdata-1.14.0, ccmap-1.14.0, CGHbase-1.48.0, ChIPpeakAnno-3.22.0, coloc-3.2-1, colorRamps-2.3, ComplexHeatmap-2.4.2, ConsensusClusterPlus-1.52.0, conumee-1.22.0, crossmeta-1.14.0, cummeRbund-2.30.0, cytolib-2.0.0, CytoML-2.0.0, dada2-1.16.0, DeconRNASeq-1.30.0, DEGseq-1.42.0, DelayedArray-0.14.0, DelayedMatrixStats-1.10.0, derfinder-1.22.0, derfinderHelper-1.22.0, DESeq2-1.28.0, diffcyt-1.8.0, DNAcopy-1.62.0, dqrng-0.2.1, DRIMSeq-1.16.0, DropletUtils-1.8.0, dupRadar-1.18.0, DynDoc-1.66.0, EBImage-4.30.0, edgeR-3.30.0, EnsDb.Hsapiens.v86-2.99.0, ensembldb-2.12.0, ExperimentHub-1.14.0, fda-5.1.4, FDb.InfiniumMethylation.hg19-2.2.0, fgsea-1.14.0, flowClust-3.26.0, flowCore-2.0.0, FlowSOM-1.20.0, FlowSorted.Blood.EPIC-1.6.1, FlowSorted.CordBloodCombined.450k-1.4.1, flowStats-4.0.0, flowViz-1.52.0, flowWorkspace-4.0.0, gcrma-2.60.0, gdsfmt-1.24.0, genefilter-1.70.0, geneLenDataBase-1.24.0, geneplotter-1.66.0, GENESIS-2.18.0, GENIE3-1.10.0, GenomeInfoDb-1.24.0, GenomeInfoDbData-1.2.3, GenomicAlignments-1.24.0, GenomicFeatures-1.40.0, GenomicFiles-1.24.0, GenomicRanges-1.40.0, GenomicScores-2.0.0, genoset-1.44.0, GEOquery-2.56.0, ggbio-1.36.0, ggcyto-1.16.0, GLAD-2.52.0, Glimma-1.16.0, GlobalAncova-4.6.0, globaltest-5.42.0, GO.db-3.11.4, goseq-1.40.0, GOstats-2.54.0, graph-1.66.0, GSEABase-1.50.0, gsmoothr-0.1.7, GSVA-1.36.0, Gviz-1.32.0, GWASExactHW-1.01, GWASTools-1.34.0, HDF5Array-1.16.0, hgu133plus2.db-3.2.3, HMMcopy-1.30.0, Homo.sapiens-1.3.1, IHW-1.16.0, IlluminaHumanMethylation450kanno.ilmn12.hg19-0.6.0, IlluminaHumanMethylation450kmanifest-0.4.0, IlluminaHumanMethylationEPICanno.ilm10b2.hg19-0.6.0, IlluminaHumanMethylationEPICanno.ilm10b4.hg19-0.6.0, IlluminaHumanMethylationEPICmanifest-0.3.0, illuminaio-0.30.0, impute-1.62.0, interactiveDisplayBase-1.26.0, IRanges-2.22.1, isoband-0.2.1, isva-1.9, KEGG.db-3.2.4, KEGGgraph-1.48.0, KEGGprofile-1.30.0, KEGGREST-1.28.0, LEA-3.0.0, limma-3.44.1, lpsymphony-1.16.0, lsa-0.73.2, lumi-2.40.0, MALDIquant-1.19.3, marray-1.66.0, maSigPro-1.60.0, MassSpecWavelet-1.54.0, MEDIPS-1.40.0, metagenomeSeq-1.30.0, metaMA-3.1.2, metap-1.3, MethylSeekR-1.28.0, methylumi-2.34.0, Mfuzz-2.48.0, minfi-1.34.0, missMethyl-1.22.0, mixOmics-6.12.0, MLInterfaces-1.68.0, MotifDb-1.30.0, motifStack-1.32.0, MotIV-1.43.0, MSnbase-2.14.0, multtest-2.44.0, muscat-1.2.0, mutoss-0.1-12, mzID-1.26.0, mzR-2.22.0, NADA-1.6-1.1, ncdfFlow-2.34.0, NOISeq-2.31.0, oligo-1.52.1, oligoClasses-1.50.0, openCyto-2.0.0, org.Hs.eg.db-3.11.4, org.Mm.eg.db-3.11.4, org.Rn.eg.db-3.11.4, OrganismDbi-1.30.0, pcaMethods-1.80.0, perm-1.0-0.0, PFAM.db-3.11.4, phyloseq-1.32.0, polyester-1.24.0, preprocessCore-1.50.0, pRoloc-1.28.0, pRolocdata-1.26.0, pRolocGUI-1.22.0, ProtGenerics-1.20.0, PSCBS-0.65.0, PureCN-1.18.0, quantsmooth-1.54.0, qvalue-2.20.0, R.devices-2.16.1, R.filesets-2.13.0, R.huge-0.9.0, R.utils-2.9.2, rappdirs-0.3.1, rARPACK-0.11-0, RBGL-1.64.0, RcppAnnoy-0.0.16, RcppHNSW-0.2.0, RcppParallel-5.0.1, RcppZiggurat-0.1.5, readr-1.3.1, regioneR-1.20.0, Repitools-1.34.0, ReportingTools-2.28.0, Rfast-1.9.9, rGADEM-2.36.0, Rgraphviz-2.32.0, rhdf5-2.32.0, Rhdf5lib-1.10.0, Rhtslib-1.20.0, Ringo-1.52.0, RNASeqPower-1.28.0, ROC-1.64.0, RProtoBufLib-2.0.0, RProtoBufLib-2.0.0, Rsamtools-2.4.0, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.2.1, rsvd-1.0.3, rtracklayer-1.48.0, S4Vectors-0.26.0, samr-3.0, SC3-1.16.0, SCANVIS-1.2.0, scater-1.16.0, scran-1.16.0, scrime-1.3.5, SeqArray-1.28.0, seqLogo-1.54.1, SeqVarTools-1.26.0, Seurat-3.1.5, shinyFiles-0.8.0, ShortRead-1.46.0, sigaR-1.35.0, siggenes-1.62.0, SingleCellExperiment-1.10.1, SingleR-1.2.4, sitmo-2.0.1, SMVar-1.3.3, SNPRelate-1.22.0, snpStats-1.38.0, SPIA-2.40.0, SSPA-2.28.0, stageR-1.10.0, SummarizedExperiment-1.18.1, sva-3.36.0, sva-3.36.0, tkWidgets-1.66.0, truncnorm-1.0-8, truncnorm-1.0-8, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.16.0, uwot-0.1.8, variancePartition-1.18.0, VariantAnnotation-1.34.0, venn-1.9, vsn-3.56.0, wateRmelon-1.32.0, widgetTools-1.66.0, Wrench-1.6.0, xcms-3.10.0, xgboost-1.2.0.1, XVector-0.28.0, zCompositions-1.3.4, zlibbioc-1.34.0 + +### R-bundle-Bioconductor/3.10-foss-2019b + +This is a list of extensions included in the module: + +admisc-0.5, affy-1.64.0, affycoretools-1.58.4, affyio-1.56.0, AgiMicroRna-2.36.0, ALDEx2-1.18.0, ALL-1.28.0, annaffy-1.58.0, annotate-1.64.0, AnnotationDbi-1.48.0, AnnotationFilter-1.10.0, AnnotationForge-1.28.0, AnnotationHub-2.18.0, aroma.affymetrix-3.2.0, aroma.apd-0.6.0, aroma.core-3.2.1, aroma.light-3.16.0, askpass-1.1, ATACseqQC-1.10.2, ballgown-2.18.0, batchelor-1.2.4, baySeq-2.20.0, beachmat-2.2.1, Biobase-2.46.0, BiocFileCache-1.10.2, BiocGenerics-0.32.0, BiocManager-1.30.10, BiocNeighbors-1.4.1, BiocParallel-1.20.1, BiocSingular-1.2.2, BiocVersion-3.10.1, biomaRt-2.42.0, biomformat-1.14.0, Biostrings-2.54.0, biovizBase-1.34.1, BSgenome-1.54.0, BSgenome.Hsapiens.UCSC.hg19-1.4.0, BSgenome.Hsapiens.UCSC.hg38-1.4.1, BSgenome.Mmusculus.UCSC.mm10-1.4.0, bumphunter-1.28.0, CAMERA-1.42.0, Category-2.52.1, CGHbase-1.46.0, ChIPpeakAnno-3.20.1, clue-0.3-57, ComplexHeatmap-2.2.0, ConsensusClusterPlus-1.50.0, cummeRbund-2.28.0, cytolib-1.8.0, CytoML-1.12.1, dada2-1.14.1, DeconRNASeq-1.28.0, DEGseq-1.40.0, DelayedArray-0.12.2, DelayedMatrixStats-1.8.0, derfinder-1.20.0, derfinderHelper-1.20.0, DESeq2-1.26.0, diffcyt-1.6.6, DNAcopy-1.60.0, dqrng-0.2.1, DRIMSeq-1.14.0, DropletUtils-1.6.1, dupRadar-1.16.0, DynDoc-1.64.0, EBImage-4.28.1, edgeR-3.28.0, ensembldb-2.10.2, fda-5.1.4, FDb.InfiniumMethylation.hg19-2.2.0, fgsea-1.12.0, flowClust-3.24.0, flowCore-1.52.1, FlowSOM-1.18.0, flowStats-3.44.0, flowViz-1.50.0, flowWorkspace-3.34.1, fs-1.3.1, gcrma-2.58.0, gdsfmt-1.22.0, genefilter-1.68.0, geneLenDataBase-1.22.0, geneplotter-1.64.0, GENESIS-2.16.1, GENIE3-1.8.0, GenomeGraphs-1.46.0, GenomeInfoDb-1.22.0, GenomeInfoDbData-1.2.2, GenomicAlignments-1.22.1, GenomicFeatures-1.38.2, GenomicFiles-1.22.0, GenomicRanges-1.38.0, GenomicScores-1.10.0, genoset-1.42.0, GEOquery-2.54.1, ggbio-1.34.0, ggcyto-1.14.1, ggplot2-3.3.0, Glimma-1.14.0, GlobalAncova-4.4.0, globaltest-5.40.0, GO.db-3.10.0, goseq-1.38.0, GOstats-2.52.0, graph-1.64.0, GSEABase-1.48.0, gsmoothr-0.1.7, GSVA-1.34.0, Gviz-1.30.3, GWASExactHW-1.01, GWASTools-1.32.0, HDF5Array-1.14.2, hgu133plus2.db-3.2.3, HMMcopy-1.28.1, Homo.sapiens-1.3.1, IHW-1.14.0, illuminaio-0.28.0, impute-1.60.0, interactiveDisplayBase-1.24.0, IRanges-2.20.2, isoband-0.2.1, KEGG.db-3.2.3, KEGGgraph-1.46.0, KEGGprofile-1.28.0, KEGGREST-1.26.1, LEA-2.8.0, limma-3.42.2, lpsymphony-1.14.0, lumi-2.38.0, MALDIquant-1.19.3, marray-1.64.0, maSigPro-1.58.0, MassSpecWavelet-1.52.0, MEDIPS-1.38.0, metagenomeSeq-1.28.2, metap-1.3, methylumi-2.32.0, Mfuzz-2.46.0, minfi-1.32.0, mixOmics-6.10.8, MLInterfaces-1.66.2, MotifDb-1.28.0, motifStack-1.30.0, MotIV-1.42.0, MSnbase-2.12.0, multtest-2.42.0, mutoss-0.1-12, mzID-1.24.0, mzR-2.20.0, ncdfFlow-2.32.0, NOISeq-2.30.0, oligoClasses-1.48.0, openCyto-1.24.0, org.Hs.eg.db-3.10.0, OrganismDbi-1.28.0, pcaMethods-1.78.0, perm-1.0-0.0, PFAM.db-3.10.0, phyloseq-1.30.0, polyester-1.22.0, preprocessCore-1.48.0, pRoloc-1.26.0, pRolocdata-1.24.0, pRolocGUI-1.20.0, ProtGenerics-1.18.0, PSCBS-0.65.0, PureCN-1.16.0, quantsmooth-1.52.0, qvalue-2.18.0, R.devices-2.16.1, R.filesets-2.13.0, R.huge-0.9.0, R.utils-2.9.2, rappdirs-0.3.1, rARPACK-0.11-0, RBGL-1.62.1, RcppAnnoy-0.0.14, RcppHNSW-0.2.0, RcppParallel-4.4.4, readr-1.3.1, regioneR-1.18.1, Repitools-1.32.0, ReportingTools-2.26.0, rGADEM-2.34.1, Rgraphviz-2.30.0, rhdf5-2.30.1, Rhdf5lib-1.8.0, Rhtslib-1.18.1, Ringo-1.50.0, RNASeqPower-1.26.0, RProtoBufLib-1.8.0, Rsamtools-2.2.3, Rsolnp-1.16, RSpectra-0.16-0, Rsubread-2.0.1, rsvd-1.0.3, rtracklayer-1.46.0, S4Vectors-0.24.3, samr-3.0, SC3-1.14.0, scater-1.14.6, scran-1.14.6, scrime-1.3.5, SeqArray-1.26.2, seqLogo-1.52.0, SeqVarTools-1.24.0, Seurat-3.1.5, shinyFiles-0.7.5, ShortRead-1.44.3, sigaR-1.34.0, siggenes-1.60.0, SingleCellExperiment-1.8.0, sitmo-2.0.1, SNPRelate-1.20.1, SPIA-2.38.0, SSPA-2.26.0, stageR-1.8.0, SummarizedExperiment-1.16.1, sva-3.34.0, sys-3.3, tkWidgets-1.64.0, truncnorm-1.0-8, TxDb.Hsapiens.UCSC.hg19.knownGene-3.2.2, TxDb.Mmusculus.UCSC.mm10.knownGene-3.10.0, tximport-1.14.0, uwot-0.1.8, VariantAnnotation-1.32.0, venn-1.9, vsn-3.54.0, widgetTools-1.64.0, Wrench-1.4.0, xcms-3.8.1, XVector-0.26.0, zlibbioc-1.32.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-CRAN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-CRAN.md new file mode 100644 index 000000000000..bf9449cc3488 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/R-bundle-CRAN.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +R-bundle-CRAN +============= + + +Bundle of R packages from CRAN + +https://www.r-project.org/ +# Available modules + + +The overview below shows which R-bundle-CRAN installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using R-bundle-CRAN, load one of these modules using a `module load` command like: + +```shell +module load R-bundle-CRAN/2023.12-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|R-bundle-CRAN/2023.12-foss-2023a|x|x|x|x|x|x| + + +### R-bundle-CRAN/2023.12-foss-2023a + +This is a list of extensions included in the module: + +abc-2.2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.2, adabag-5.0, ade4-1.7-22, ADGofTest-0.3, admisc-0.34, aggregation-1.0.1, AICcmodavg-2.3-3, akima-0.6-3.4, alabama-2023.1.0, AlgDesign-1.2.1, alluvial-0.1-2, AMAPVox-1.0.1, animation-2.7, aod-1.3.2, apcluster-1.4.11, ape-5.7-1, aplot-0.2.2, argparse-2.2.2, aricode-1.0.3, arm-1.13-1, arrayhelpers-1.1-0, asnipe-1.1.17, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-4, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-11, aws-2.5-3, awsMethods-1.1-1, backports-1.4.1, bacr-1.0.1, bartMachine-1.3.4.1, bartMachineJARs-1.2.1, base64-2.0.1, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.8, BayesLogit-2.1, bayesm-3.1-6, BayesPen-1.0, bayesplot-1.10.0, BB-2019.10-1, BBmisc-1.13, bbmle-1.0.25.1, BCEE-1.3.2, BDgraph-2.72, bdsmatrix-1.3-6, beanplot-1.3.1, beeswarm-0.4.0, berryFunctions-1.22.0, betareg-3.1-4, BH-1.81.0-1, BiasedUrn-2.0.11, bibtex-0.5.1, BIEN-1.2.6, bigD-0.2.0, BIGL-1.8.0, bigmemory-4.6.1, bigmemory.sri-0.1.6, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-4, biom-0.3.12, biomod2-4.2-4, bit-4.0.5, bit64-4.0.5, bitops-1.0-7, blavaan-0.5-2, blob-1.2.4, BMA-3.18.17, bmp-0.3, bnlearn-4.9.1, bold-1.3.0, boot-1.3-28.1, bootstrap-2019.6, Boruta-8.0.0, brglm-0.7.2, bridgedist-0.1.2, bridgesampling-1.1-2, brms-2.20.4, Brobdingnag-1.2-9, broom-1.0.5, broom.helpers-1.14.0, broom.mixed-0.2.9.4, bst-0.3-24, Cairo-1.6-2, calibrate-1.7.7, car-3.1-2, carData-3.0-5, caret-6.0-94, catlearn-1.0, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, changepoint-2.2.4, checkmate-2.3.1, chemometrics-1.4.4, chk-0.9.1, chkptstanr-0.1.1, chron-2.3-61, circlize-0.4.15, circular-0.5-0, class-7.3-22, classInt-0.4-10, cld2-1.2.4, clisymbols-1.2.0, clock-0.7.0, clue-0.3-65, cluster-2.1.6, clusterGeneration-1.3.8, clusterRepro-0.9, clustree-0.5.1, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.4, cobalt-4.5.2, cobs-1.3-5, coda-0.19-4, codetools-0.2-19, coin-1.4-3, collapse-2.0.7, colorspace-2.1-0, colourpicker-1.3.0, combinat-0.0-8, ComICS-1.0.4, ComplexUpset-1.3.3, compositions-2.0-6, CompQuadForm-1.4.3, conditionz-0.1.0, conflicted-1.2.0, conquer-1.3.3, ConsRank-2.1.3, contfrac-1.1-12, copCAR-2.0-4, copula-1.1-3, corpcor-1.6.10, corrplot-0.92, covr-3.6.4, CovSel-1.2.1, covsim-1.0.0, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-18.1, crfsuite-0.4.2, crosstalk-1.2.1, crul-1.4.0, cSEM-0.5.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.1.0, cubelyr-1.0.2, cvAUC-1.1.4, CVST-0.2-3, CVXR-1.0-11, d3Network-0.5.2.1, dagitty-0.3-4, data.table-1.14.10, data.tree-1.1.0, DataCombine-0.2.21, date-1.2-42, dbarts-0.9-25, DBI-1.1.3, dbplyr-2.4.0, dbscan-1.1-12, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-42, debugme-1.1.0, deldir-2.0-2, dendextend-1.17.1, DEoptim-2.2-8, DEoptimR-1.1-3, DepthProc-2.1.5, Deriv-4.1.3, DescTools-0.99.52, deSolve-1.40, dfidx-0.0-5, DHARMa-0.4.6, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.10, DiceKriging-1.6.0, dichromat-2.0-0.1, dimRed-0.2.6, diptest-0.77-0, DiscriMiner-0.1-29, dismo-1.3-14, distillery-1.2-1, distr-2.9.2, distrEx-2.9.0, distributional-0.3.2, DistributionUtils-0.6-1, diveRsity-1.9.90, dlm-1.1-6, DMCfun-2.0.2, doc2vec-0.2.0, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.6, doSNOW-1.0.20, dotCall64-1.1-1, downloader-0.4, dplyr-1.1.4, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.31, dtangle-2.0.9, dtplyr-1.3.1, DTRreg-2.0, dtw-1.23-1, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-14, earth-5.3.2, EasyABC-1.5.2, ECOSolveR-0.5.5, ellipse-0.5.0, elliptic-1.4-0, emdbook-1.3.13, emmeans-1.8.9, emoa-0.5-0.2, emulator-1.2-21, energy-1.7-11, ENMeval-2.0.4, entropy-1.3.1, EnvStats-2.8.1, epitools-0.5-10.1, ergm-4.5.0, ergm.count-4.1.1, ergm.multi-0.2.0, estimability-1.4.1, EValue-4.1.3, evd-2.3-6.1, Exact-3.2, expm-0.999-8, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.19, extrafontdb-1.0, extRemes-2.1-3, FactoMineR-2.9, FactorCopula-0.9.3, fail-1.3, farver-2.1.1, fastcluster-1.2.3, fastDummies-1.7.3, fasterize-1.0.5, fastICA-1.2-4, fastmatch-1.1-4, fdrtool-1.2.17, feather-0.3.5, ff-4.0.9, fftw-1.0-7, fftwtools-0.9-11, fields-15.2, filehash-2.4-5, finalfit-1.0.7, findpython-1.0.8, fishMod-0.29, fitdistrplus-1.1-11, FKSUM-1.0.1, flashClust-1.01-2, flexclust-1.4-1, flexmix-2.3-19, flextable-0.9.4, fma-2.5, FME-1.3.6.3, fmri-1.9.12, FNN-1.1.3.2, fontBitstreamVera-0.1.1, fontLiberation-0.1.0, fontquiver-0.2.1, forcats-1.0.0, foreach-1.5.2, forecast-8.21.1, foreign-0.8-86, formatR-1.14, Formula-1.2-5, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-10, fpp-0.5, fracdiff-1.5-2, furrr-0.3.1, futile.logger-1.4.3, futile.options-1.0.1, future-1.33.0, future.apply-1.11.0, gam-1.22-3, gamlss-5.4-20, gamlss.data-6.0-2, gamlss.dist-6.1-1, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.5-3, gap.datasets-0.0.6, gapfill-0.9.6-1, gargle-1.5.2, gaussquad-1.0-3, gbm-2.1.8.1, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-3.0.0, gdistance-1.6.4, gdtools-0.3.5, gee-4.13-26, geeM-0.10.1, geepack-1.3.9, geex-1.1.1, geiger-2.0.11, GeneNet-1.2.16, generics-0.1.3, genoPlotR-0.8.11, GenSA-1.1.10.1, geojsonsf-2.0.3, geometries-0.2.3, geometry-0.4.7, getopt-1.20.4, GetoptLong-1.0.5, gfonts-0.2.0, GGally-2.2.0, ggbeeswarm-0.7.2, ggdag-0.2.10, ggdist-3.3.1, ggExtra-0.10.1, ggfan-0.1.3, ggforce-0.4.1, ggformula-0.12.0, ggfun-0.1.3, ggh4x-0.2.6, ggnetwork-0.5.12, ggplot2-3.4.4, ggplotify-0.1.2, ggpubr-0.6.0, ggraph-2.1.0, ggrepel-0.9.4, ggridges-0.5.4, ggsci-3.0.0, ggsignif-0.6.4, ggstance-0.3.6, ggstats-0.5.1, ggvenn-0.1.10, ggvis-0.4.8, GillespieSSA-0.6.2, git2r-0.33.0, GJRM-0.2-6.4, glasso-1.11, gld-2.6.6, gllvm-1.4.3, glmmML-1.1.6, glmmTMB-1.1.8, glmnet-4.1-8, GlobalOptions-0.1.2, globals-0.16.2, gmm-1.8, gmodels-2.18.1.1, gmp-0.7-3, gnumeric-0.7-10, goftest-1.2-3, gomms-1.0, googledrive-2.1.1, googlesheets4-1.1.1, gower-1.0.1, GPArotation-2023.11-1, gplots-3.1.3, graphlayouts-1.0.2, grf-2.3.1, gridBase-0.4-7, gridExtra-2.3, gridGraphics-0.5-1, grImport2-0.3-1, grpreg-3.4.0, GSA-1.03.2, gsalib-2.2.1, gsl-2.1-8, gsw-1.1-1, gt-0.10.0, gtable-0.3.4, gtools-3.9.5, gtsummary-1.7.2, GUTS-1.2.5, gWidgets2-1.0-9, gWidgets2tcltk-1.0-8, GxEScanR-2.0.2, h2o-3.42.0.2, hal9001-0.4.6, haldensify-0.2.3, hardhat-1.3.0, harmony-1.2.0, hash-2.2.6.3, haven-2.5.4, hdf5r-1.3.8, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.3, HGNChelper-0.8.1, HiddenMarkov-1.8-13, Hmisc-5.1-1, hms-1.1.3, Hmsc-3.0-13, htmlTable-2.4.2, httpcode-0.3.0, huge-1.3.5, hunspell-3.0.3, hwriter-1.3.2.1, HWxtest-1.1.9, hypergeo-1.2-13, ica-1.0-3, IDPmisc-1.1.20, idr-1.3, ids-1.0.1, ie2misc-0.9.1, igraph-1.5.1, image.binarization-0.1.3, imager-0.45.2, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.5, infotheo-1.2.0.1, inline-0.3.19, intergraph-2.0-3, interp-1.1-5, interpretR-0.2.5, intrinsicDimension-1.2.0, inum-1.0-5, ipred-0.9-14, irace-3.5, irlba-2.3.5.1, ismev-1.42, Iso-0.0-21, isoband-0.2.7, ISOcodes-2023.12.07, ISOweek-0.6-2, iterators-1.0.14, itertools-0.1-3, JADE-2.0-4, janeaustenr-1.0.0, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-6, jpeg-0.1-10, jsonify-1.2.2, jstable-1.1.3, juicyjuice-0.1.0, kde1d-1.0.5, kedd-1.0.3, kernlab-0.9-32, KernSmooth-2.23-22, kinship2-1.9.6, klaR-1.7-2, KODAMA-2.4, kohonen-3.0.12, ks-1.14.1, labdsv-2.1-0, labeling-0.4.3, labelled-2.12.0, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.3, lassosum-0.4.5, lattice-0.22-5, latticeExtra-0.6-30, lava-1.7.3, lavaan-0.6-16, lazy-1.2-18, lazyeval-0.2.2, LCFdata-2.0, lda-1.4.2, ldbounds-2.0.2, leafem-0.2.3, leaflet-2.2.1, leaflet.providers-2.0.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.4.3.1, lhs-1.1.6, libcoin-1.0-10, limSolve-1.5.7, linkcomm-1.0-14, linprog-0.9-4, liquidSVM-1.2.4, listenv-0.9.0, lme4-1.1-35.1, LMERConvenienceFunctions-3.0, lmerTest-3.1-3, lmom-3.0, Lmoments-1.3-1, lmtest-0.9-40, lobstr-1.1.2, locfdr-1.1-8, locfit-1.5-9.8, logcondens-2.1.8, logger-0.2.2, logistf-1.26.0, logspline-2.1.21, longitudinal-1.1.13, longmemo-1.1-2, loo-2.6.0, lpSolve-5.6.19, lpSolveAPI-5.5.2.0-17.11, lqa-1.0-3, lsei-1.3-0, lslx-0.6.11, lubridate-1.9.3, lwgeom-0.2-13, magic-1.6-1, magick-2.8.1, MALDIquant-1.22.1, manipulateWidget-0.11.1, mapproj-1.2.11, maps-3.4.1.1, maptools-1.1-8, markdown-1.12, MASS-7.3-60, Matching-4.10-14, MatchIt-4.5.5, mathjaxr-1.6-0, matlab-1.0.4, Matrix-1.6-4, matrixcalc-1.0-6, MatrixModels-0.5-3, matrixStats-1.1.0, maxLik-1.5-2, maxlike-0.1-10, maxnet-0.1.4, mboost-2.9-9, mclogit-0.9.6, mclust-6.0.1, mcmc-0.9-8, MCMCpack-1.6-3, mcmcse-1.5-0, mda-0.5-4, medflex-0.6-10, mediation-4.5.0, memisc-0.99.31.6, memuse-4.2-3, MESS-0.5.12, metadat-1.2-0, metafor-4.4-0, MetaUtility-2.1.2, mets-1.3.3, mgcv-1.9-0, mgsub-1.7.3, mhsmm-0.4.21, mi-1.1, mice-3.16.0, miceadds-3.16-18, microbenchmark-1.4.10, MIIVsem-0.5.8, minerva-1.5.10, minpack.lm-1.2-4, minqa-1.2.6, mirt-1.41, misc3d-0.9-1, miscTools-0.6-28, missForest-1.5, mitml-0.4-5, mitools-2.4, mixtools-2.0.0, mlbench-2.1-3.1, mlegp-3.1.9, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.1, mlrMBO-1.1.5.1, mltools-0.3.5, mnormt-2.1.1, ModelMetrics-1.2.2.2, modelr-0.1.11, modeltools-0.2-23, momentfit-0.5, moments-0.14.1, MonteCarlo-1.0.6, mosaicCore-0.9.4.0, mpath-0.4-2.23, mRMRe-2.1.2.1, msm-1.7.1, mstate-0.3.2, multcomp-1.4-25, multcompView-0.1-9, multicool-1.0.0, multipol-1.0-9, munsell-0.5.0, mvabund-4.2.1, mvnfast-0.2.8, mvtnorm-1.2-4, nabor-0.5.0, naniar-1.0.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29.1, ncdf4-1.22, NCmisc-1.2.0, network-1.18.2, networkDynamic-0.11.3, networkLite-1.0.5, neuralnet-1.44.2, neuRosim-0.2-14, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.5, nlme-3.1-164, nloptr-2.0.3, NLP-0.2-1, nlsem-0.8-1, nnet-7.3-19, nnls-1.5, nonnest2-0.5-6, nor1mix-1.3-2, norm-1.0-11.1, nortest-1.0-4, np-0.60-17, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.4.0, oce-1.8-2, OceanView-1.0.6, oddsratio-2.0.1, officer-0.6.3, openair-2.18-0, OpenMx-2.21.11, openxlsx-4.2.5.2, operator.tools-1.6.3, optextras-2019-12.4, optimParallel-1.0-2, optimr-2019-12.16, optimx-2023-10.21, optmatch-0.10.7, optparse-1.7.3, ordinal-2023.12-4, origami-1.0.7, oro.nifti-0.11.4, orthopolynom-1.0-6.1, osqp-0.6.3.2, outliers-0.15, packrat-0.9.2, pacman-0.5.1, pammtools-0.5.92, pamr-1.56.1, pan-1.9, parallelDist-0.2.6, parallelly-1.36.0, parallelMap-1.5.1, ParamHelpers-1.14.1, parsedate-1.3.1, party-1.3-14, partykit-1.2-20, pastecs-1.3.21, patchwork-1.1.3, pbapply-1.7-2, pbivnorm-0.6.0, pbkrtest-0.5.2, PCAmatchR-0.3.3, pcaPP-2.0-4, pdp-0.8.1, PearsonDS-1.3.0, pec-2023.04.12, penalized-0.9-52, penfa-0.1.1, peperr-1.5, PermAlgo-1.2, permute-0.9-7, phangorn-2.11.1, pheatmap-1.0.12, phylobase-0.8.10, phytools-2.0-3, pim-2.0.2, pinfsc50-1.3.0, pixmap-0.4-12, pkgmaker-0.32.10, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.4, plotly-4.10.3, plotmo-3.6.2, plotrix-3.8-4, pls-2.8-3, plyr-1.8.9, PMA-1.2-2, png-0.1-8, PoissonSeq-1.1.2, poLCA-1.6.0.1, polspline-1.1.24, Polychrome-1.5.1, polyclip-1.10-6, polycor-0.8-1, polynom-1.4-1, posterior-1.5.0, ppcor-1.1, prabclus-2.3-3, pracma-2.4.4, PresenceAbsence-1.1.11, preseqR-4.0.0, prettyGraphs-2.1.6, princurve-2.1.6, pROC-1.18.5, prodlim-2023.08.28, profileModel-0.6.1, proftools-0.99-3, progress-1.2.3, progressr-0.14.0, projpred-2.7.0, proto-1.0.0, proxy-0.4-27, proxyC-0.3.4, pryr-0.1.6, pscl-1.5.5.1, pspline-1.0-19, psych-2.3.9, Publish-2023.01.17, pulsar-0.3.11, pvclust-2.2-0, qgam-1.3.4, qgraph-1.9.8, qqman-0.1.9, qrnn-2.1, quadprog-1.5-8, quanteda-3.3.1, quantmod-0.4.25, quantreg-5.97, questionr-0.7.8, QuickJSR-1.0.8, R.cache-0.16.0, R.matlab-3.7.0, R.methodsS3-1.8.2, R.oo-1.25.0, R.rsp-0.45.0, R.utils-2.12.3, R2WinBUGS-2.1-21, random-0.2.6, randomForest-4.7-1.1, randomForestSRC-3.2.3, randtoolbox-2.0.4, rangeModelMetadata-0.1.5, ranger-0.16.0, RANN-2.6.1, rapidjsonr-1.2.0, rARPACK-0.11-0, raster-3.6-26, rasterVis-0.51.6, ratelimitr-0.4.1, RBesT-1.7-2, rbibutils-2.2.16, rbison-1.0.0, Rborist-0.3-5, RCAL-2.0, Rcgmin-2022-4.30, RCircos-1.2.2, RColorBrewer-1.1-3, RcppArmadillo-0.12.6.6.1, RcppEigen-0.3.3.9.4, RcppGSL-0.3.13, RcppParallel-5.1.7, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-2.1.6, RcppTOML-0.2.2, RCurl-1.98-1.13, rda-1.2-1, Rdpack-2.6, rdrop2-0.8.2.1, reactable-0.4.4, reactR-0.5.0, readbitmap-0.1.5, reader-1.0.6, readODS-2.1.0, readr-2.1.4, readxl-1.4.3, rebird-1.3.0, recipes-1.0.8, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.9.5, relsurv-2.2-9, rematch-2.0.0, rentrez-1.2.3, renv-1.0.3, reprex-2.0.2, resample-0.6, reshape-0.8.9, reshape2-1.4.4, reticulate-1.34.0, rex-1.2.1, rgbif-3.7.8, RGCCA-3.0.2, rgdal-1.6-7, rgeos-0.6-4, rgexf-0.16.2, rgl-1.2.8, Rglpk-0.6-5, RhpcBLASctl-0.23-42, ridge-3.3, ridigbio-0.3.7, RInside-0.2.18, rio-1.0.1, riskRegression-2023.09.08, ritis-1.0.0, RItools-0.3-3, rJava-1.0-10, rjson-0.2.21, RJSONIO-1.3-1.9, rle-0.9.2, rlecuyer-0.3-8, rlemon-0.2.1, rlist-0.4.6.2, rmeta-3.0, Rmpfr-0.9-4, rms-6.7-1, RMTstat-0.3.1, rncl-0.8.7, rnetcarto-0.2.6, RNeXML-2.4.11, rngtools-1.5.2, rngWELL-0.10-9, RNifti-1.5.1, robustbase-0.99-1, ROCR-1.0-11, ROI-1.0-1, ROI.plugin.glpk-1.0-0, Rook-1.2, rootSolve-1.8.2.4, roptim-0.1.6, rotl-3.1.0, rpact-3.4.0, rpart-4.1.23, rpf-1.0.14, RPMM-1.25, RPostgreSQL-0.7-5, rrcov-1.7-4, rredlist-0.7.1, rsample-1.2.0, rsconnect-1.1.1, Rserve-1.8-13, RSNNS-0.4-17, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.3.4, Rssa-1.0.5, rstan-2.32.3, rstantools-2.3.1.1, rstatix-0.7.2, rtdists-0.11-5, Rtsne-0.17, Rttf2pt1-1.3.12, RUnit-0.4.32, ruv-0.9.7.1, rvertnet-0.8.2, rvest-1.0.3, rvinecopulib-0.6.3.1.1, Rvmmin-2018-4.17.1, RWeka-0.4-46, RWekajars-3.9.3-2, s2-1.1.4, sampling-2.10, sandwich-3.0-2, SBdecomp-1.2, scales-1.3.0, scam-1.2-14, scatterpie-0.2.1, scatterplot3d-0.3-44, scs-3.2.4, sctransform-0.4.1, SDMTools-1.1-221.2, seewave-2.2.3, segmented-2.0-0, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-6, sendmailR-1.4-0, sensemakr-0.1.4, sentometrics-1.0.0, seqinr-4.2-36, servr-0.27, setRNG-2022.4-1, sf-1.0-14, sfheaders-0.4.3, sfsmisc-1.1-16, shadowtext-0.1.2, shape-1.4.6, shapefiles-0.7.2, shinycssloaders-1.0.0, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-1.8-0, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.5, slam-0.1-50, slider-0.3.1, sm-2.2-5.7.1, smoof-1.6.0.3, smoother-1.1, sn-2.1.1, sna-2.7-2, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.1, snowfall-1.84-6.3, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sp-2.1-2, spaa-0.2.2, spam-2.10-0, spaMM-4.4.0, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-17, spatstat-3.0-7, spatstat.core-2.4-4, spatstat.data-3.0-3, spatstat.explore-3.2-5, spatstat.geom-3.2-7, spatstat.linnet-3.1-3, spatstat.model-3.2-8, spatstat.random-3.2-2, spatstat.sparse-3.0-3, spatstat.utils-3.0-4, spData-2.3.0, spdep-1.3-1, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.2, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.26.28, stargazer-5.2.3, stars-0.6-4, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.5.0, statnet-2019.6, statnet.common-4.9.0, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.12, strucchange-1.5-3, styler-1.10.2, subplex-1.8, SuperLearner-2.0-28.1, SuppDists-1.1-9.7, survey-4.2-1, survival-3.5-7, survivalROC-1.0.3.1, svd-0.5.5, svglite-2.1.3, svUnit-1.0.6, swagger-3.33.1, symmoments-1.2.1, tableone-0.13.2, tabletools-0.1.0, tau-0.0-25, taxize-0.9.100, tcltk2-1.2-11, tclust-1.5-5, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.2.0, terra-1.7-55, testit-0.13, textcat-1.0-8, textplot-0.2.2, TFisher-0.2.0, TH.data-1.1-2, threejs-0.3.3, tictoc-1.2, tidybayes-3.0.6, tidygraph-1.2.3, tidyr-1.3.0, tidyselect-1.2.0, tidytext-0.4.1, tidytree-0.4.5, tidyverse-2.0.0, tiff-0.1-12, timechange-0.2.0, timeDate-4022.108, timereg-2.0.5, tkrplot-0.0-27, tm-0.7-11, tmap-3.3-4, tmaptools-3.1-1, TMB-1.9.9, tmle-2.0.0, tmvnsim-1.0-2, tmvtnorm-1.6, tokenizers-0.3.0, topicmodels-0.2-15, TraMineR-2.2-8, tree-1.0-43, triebeard-0.4.1, trimcluster-0.1-5, tripack-1.3-9.1, TruncatedNormal-2.2.2, truncnorm-1.0-9, trust-0.1-8, tseries-0.10-55, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.4, tuneR-1.4.6, twang-2.6, tweedie-2.3.5, tweenr-2.0.2, tzdb-0.4.0, ucminf-1.2.0, udpipe-0.8.11, umap-0.2.10.0, unbalanced-2.0, unikn-0.9.0, uniqueAtomMat-0.1-3-2, units-0.8-5, unmarked-1.3.2, UpSetR-1.4.0, urca-1.3-3, urltools-1.7.3, uroot-2.1-2, uuid-1.1-1, V8-4.4.1, varhandle-2.0.6, vcd-1.4-11, vcfR-1.15.0, vegan-2.6-4, VennDiagram-1.7.3, VGAM-1.1-9, VIM-6.2.2, VineCopula-2.5.0, vioplot-0.4.0, vipor-0.4.5, viridis-0.6.4, viridisLite-0.4.2, visdat-0.6.0, visNetwork-2.1.2, vroom-1.6.5, VSURF-1.2.0, warp-0.2.1, waveslim-1.8.4, wdm-0.2.4, webshot-0.5.5, webutils-1.2.0, weights-1.0.4, WeightSVM-1.7-13, wellknown-0.7.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, wk-0.9.1, word2vec-0.4.0, wordcloud-2.6, worrms-0.4.3, writexl-1.4.2, WriteXLS-6.4.0, xgboost-1.7.6.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.16, xts-0.13.1, yaImpute-1.0-33, yulab.utils-0.1.0, zeallot-0.1.0, zoo-1.8-12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/R.md b/mkdocs/docs/HPC/only/gent/available_software/detail/R.md index d9bacb05d2d4..702d174f13b5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/R.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/R.md @@ -6,6 +6,10 @@ hide: R = + +R is a free software environment for statistical computing and graphics. + +https://www.r-project.org/ # Available modules @@ -14,24 +18,116 @@ The overview below shows which R installations are available per HPC-UGent Tier- To start using R, load one of these modules using a `module load` command like: ```shell -module load R/4.2.2-foss-2022b +module load R/4.3.2-gfbf-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|R/4.2.2-foss-2022b|x|x|x|x|x|x|x|x| -|R/4.2.1-foss-2022a|x|x|x|x|x|x|x|x| -|R/4.2.0-foss-2021b|x|x|x|x|x|x|x|x| -|R/4.1.2-foss-2021b|x|x|x|x|x|x|x|x| -|R/4.1.0-foss-2021a|-|x|x|x|x|x|x|x| -|R/4.0.5-fosscuda-2020b|-|-|-|-|x|-|-|-| -|R/4.0.5-foss-2020b|-|x|x|x|x|x|x|x| -|R/4.0.4-fosscuda-2020b|-|-|-|-|x|-|-|-| -|R/4.0.4-foss-2020b|-|x|x|x|x|x|x|x| -|R/4.0.3-fosscuda-2020b|-|-|-|-|x|-|-|-| -|R/4.0.3-foss-2020b|x|x|x|x|x|x|x|x| -|R/4.0.0-foss-2020a|-|x|x|-|x|x|x|x| -|R/3.6.3-foss-2020a|-|-|x|-|x|x|-|x| -|R/3.6.2-foss-2019b|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|R/4.3.2-gfbf-2023a|x|x|x|x|x|x| +|R/4.2.2-foss-2022b|x|x|x|x|x|x| +|R/4.2.1-foss-2022a|x|x|x|x|x|x| +|R/4.2.0-foss-2021b|x|x|x|x|x|x| +|R/4.1.2-foss-2021b|x|x|x|x|x|x| +|R/4.1.0-foss-2021a|x|x|x|x|x|x| +|R/4.0.5-fosscuda-2020b|-|-|-|-|x|-| +|R/4.0.5-foss-2020b|-|x|x|x|x|x| +|R/4.0.4-fosscuda-2020b|-|-|-|-|x|-| +|R/4.0.4-foss-2020b|-|x|x|x|x|x| +|R/4.0.3-fosscuda-2020b|-|-|-|-|x|-| +|R/4.0.3-foss-2020b|x|x|x|x|x|x| +|R/4.0.0-foss-2020a|-|x|x|-|x|x| +|R/3.6.3-foss-2020a|-|-|x|-|x|x| +|R/3.6.2-foss-2019b|-|x|x|-|x|x| + + +### R/4.3.2-gfbf-2023a + +This is a list of extensions included in the module: + +askpass-1.2.0, base, base64enc-0.1-3, brew-1.0-8, brio-1.1.3, bslib-0.5.1, cachem-1.0.8, callr-3.7.3, cli-3.6.1, clipr-0.8.0, commonmark-1.9.0, compiler, cpp11-0.4.6, crayon-1.5.2, credentials-2.0.1, curl-5.1.0, datasets, desc-1.4.2, devtools-2.4.5, diffobj-0.3.5, digest-0.6.33, downlit-0.4.3, ellipsis-0.3.2, evaluate-0.23, fansi-1.0.5, fastmap-1.1.1, fontawesome-0.5.2, fs-1.6.3, gert-2.0.0, gh-1.4.0, gitcreds-0.1.2, glue-1.6.2, graphics, grDevices, grid, highr-0.10, htmltools-0.5.7, htmlwidgets-1.6.2, httpuv-1.6.12, httr-1.4.7, httr2-0.2.3, ini-0.3.1, jquerylib-0.1.4, jsonlite-1.8.7, knitr-1.45, later-1.3.1, lifecycle-1.0.3, magrittr-2.0.3, memoise-2.0.1, methods, mime-0.12, miniUI-0.1.1.1, openssl-2.1.1, parallel, pillar-1.9.0, pkgbuild-1.4.2, pkgconfig-2.0.3, pkgdown-2.0.7, pkgload-1.3.3, praise-1.0.0, prettyunits-1.2.0, processx-3.8.2, profvis-0.3.8, promises-1.2.1, ps-1.7.5, purrr-1.0.2, R6-2.5.1, ragg-1.2.6, rappdirs-0.3.3, rcmdcheck-1.4.0, Rcpp-1.0.11, rematch2-2.1.2, remotes-2.4.2.1, rlang-1.1.2, rmarkdown-2.25, roxygen2-7.2.3, rprojroot-2.0.4, rstudioapi-0.15.0, rversions-2.1.2, sass-0.4.7, sessioninfo-1.2.2, shiny-1.7.5.1, sourcetools-0.1.7-1, splines, stats, stats4, stringi-1.7.12, stringr-1.5.0, sys-3.4.2, systemfonts-1.0.5, tcltk, testthat-3.2.0, textshaping-0.3.7, tibble-3.2.1, tinytex-0.48, tools, urlchecker-1.0.1, usethis-2.2.2, utf8-1.2.4, utils, vctrs-0.6.4, waldo-0.5.2, whisker-0.4.1, withr-2.5.2, xfun-0.41, xml2-1.3.5, xopen-1.0.0, xtable-1.8-4, yaml-2.3.7, zip-2.3.0 + +### R/4.2.2-foss-2022b + +This is a list of extensions included in the module: + +abc-2.2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-22, ADGofTest-0.3, admisc-0.31, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-3.4, alabama-2022.4-1, AlgDesign-1.2.1, alluvial-0.1-2, AMAPVox-1.0.0, animation-2.7, aod-1.3.2, apcluster-1.4.10, ape-5.7-1, aplot-0.1.10, argparse-2.2.2, aricode-1.0.2, arm-1.13-1, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-10, aws-2.5-1, awsMethods-1.1-1, backports-1.4.1, bacr-1.0.1, bartMachine-1.3.3.1, bartMachineJARs-1.2.1, base, base64-2.0.1, base64enc-0.1-3, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.8, BayesLogit-2.1, bayesm-3.1-5, BayesPen-1.0, bayesplot-1.10.0, BB-2019.10-1, BBmisc-1.13, bbmle-1.0.25, BCEE-1.3.1, BDgraph-2.72, bdsmatrix-1.3-6, beanplot-1.3.1, beeswarm-0.4.0, berryFunctions-1.22.0, betareg-3.1-4, BH-1.81.0-1, BiasedUrn-2.0.9, bibtex-0.5.1, bigD-0.2.0, BIGL-1.7.0, bigmemory-4.6.1, bigmemory.sri-0.1.6, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-4, biom-0.3.12, biomod2-4.2-2, bit-4.0.5, bit64-4.0.5, bitops-1.0-7, blavaan-0.4-7, blob-1.2.4, BMA-3.18.17, bmp-0.3, bnlearn-4.8.1, bold-1.2.0, boot-1.3-28.1, bootstrap-2019.6, Boruta-8.0.0, brew-1.0-8, brglm-0.7.2, bridgedist-0.1.2, bridgesampling-1.1-2, brio-1.1.3, brms-2.19.0, Brobdingnag-1.2-9, broom-1.0.4, broom.helpers-1.12.0, broom.mixed-0.2.9.4, bslib-0.4.2, bst-0.3-24, cachem-1.0.7, Cairo-1.6-0, calibrate-1.7.7, callr-3.7.3, car-3.1-1, carData-3.0-5, caret-6.0-93, catlearn-0.9.1, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.2.10, cghFLasso-0.2-1, changepoint-2.2.4, checkmate-2.1.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-60, circlize-0.4.15, circular-0.4-95, class-7.3-21, classInt-0.4-9, cld2-1.2.4, cli-3.6.0, clipr-0.8.0, clisymbols-1.2.0, clock-0.6.1, clue-0.3-64, cluster-2.1.4, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.5.0, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.2, cobalt-4.4.1, cobs-1.3-5, coda-0.19-4, codetools-0.2-19, coin-1.4-2, collapse-1.9.3, colorspace-2.1-0, colourpicker-1.2.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.8.1, compiler, ComplexUpset-1.3.3, compositions-2.0-5, CompQuadForm-1.4.3, conditionz-0.1.0, conflicted-1.2.0, conquer-1.3.3, contfrac-1.1-12, copCAR-2.0-4, copula-1.1-2, corpcor-1.6.10, corrplot-0.92, covr-3.6.1, CovSel-1.2.1, covsim-1.0.0, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-18.1, cpp11-0.4.3, crayon-1.5.2, credentials-1.3.2, crfsuite-0.4.1, crosstalk-1.2.0, crul-1.3, cSEM-0.5.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.6, cubelyr-1.0.2, curl-5.0.0, cvAUC-1.1.4, CVST-0.2-3, CVXR-1.0-11, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.8, data.tree-1.0.0, DataCombine-0.2.21, datasets, date-1.2-42, dbarts-0.9-23, DBI-1.1.3, dbplyr-2.3.1, dbscan-1.1-11, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-42, debugme-1.1.0, deldir-1.0-6, dendextend-1.16.0, DEoptim-2.2-8, DEoptimR-1.0-11, DepthProc-2.1.5, Deriv-4.1.3, desc-1.4.2, DescTools-0.99.48, deSolve-1.35, devtools-2.4.5, dfidx-0.0-5, DHARMa-0.4.6, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.9, DiceKriging-1.6.0, dichromat-2.0-0.1, diffobj-0.3.5, digest-0.6.31, dimRed-0.2.6, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-9, distillery-1.2-1, distr-2.9.1, distrEx-2.9.0, distributional-0.3.1, DistributionUtils-0.6-0, diveRsity-1.9.90, dlm-1.1-6, DMCfun-2.0.2, doc2vec-0.2.0, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.6, doSNOW-1.0.20, dotCall64-1.0-2, downlit-0.4.2, downloader-0.4, dplyr-1.1.0, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.27, dtangle-2.0.9, dtplyr-1.3.0, DTRreg-1.7, dtw-1.23-1, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-13, earth-5.3.2, EasyABC-1.5.2, ECOSolveR-0.5.5, elementR-1.3.7, ellipse-0.4.3, ellipsis-0.3.2, elliptic-1.4-0, emdbook-1.3.12, emmeans-1.8.5, emoa-0.5-0.1, emulator-1.2-21, energy-1.7-11, ENMeval-2.0.4, entropy-1.3.1, EnvStats-2.7.0, epitools-0.5-10.1, ergm-4.4.0, ergm.count-4.1.1, estimability-1.4.1, evaluate-0.20, EValue-4.1.3, evd-2.3-6.1, Exact-3.2, expm-0.999-7, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.19, extrafontdb-1.0, extRemes-2.1-3, FactoMineR-2.7, FactorCopula-0.9.3, fail-1.3, fansi-1.0.4, farver-2.1.1, fastcluster-1.2.3, fastDummies-1.6.3, fasterize-1.0.4, fastICA-1.2-3, fastmap-1.1.1, fastmatch-1.1-3, fdrtool-1.2.17, feather-0.3.5, ff-4.0.9, fftw-1.0-7, fftwtools-0.9-11, fields-14.1, filehash-2.4-5, finalfit-1.0.6, findpython-1.0.8, fishMod-0.29, fitdistrplus-1.1-8, FKSUM-1.0.1, flashClust-1.01-2, flexclust-1.4-1, flexmix-2.3-19, flextable-0.9.2, fma-2.5, FME-1.3.6.2, fmri-1.9.11, FNN-1.1.3.1, fontawesome-0.5.0, fontBitstreamVera-0.1.1, fontLiberation-0.1.0, fontquiver-0.2.1, forcats-1.0.0, foreach-1.5.2, forecast-8.21, foreign-0.8-84, formatR-1.14, Formula-1.2-5, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-10, fpp-0.5, fracdiff-1.5-2, fs-1.6.1, furrr-0.3.1, futile.logger-1.4.3, futile.options-1.0.1, future-1.32.0, future.apply-1.10.0, gam-1.22-1, gamlss-5.4-12, gamlss.data-6.0-2, gamlss.dist-6.0-5, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.5-1, gap.datasets-0.0.5, gapfill-0.9.6-1, gargle-1.3.0, gaussquad-1.0-3, gbm-2.1.8.1, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0.1, gdistance-1.6, gdtools-0.3.3, gee-4.13-25, geeM-0.10.1, geepack-1.3.9, geex-1.1.1, geiger-2.0.10, GeneNet-1.2.16, generics-0.1.3, genoPlotR-0.8.11, GenSA-1.1.8, geojsonsf-2.0.3, geometries-0.2.2, geometry-0.4.7, gert-1.9.2, getopt-1.20.3, GetoptLong-1.0.5, gfonts-0.2.0, GGally-2.1.2, ggbeeswarm-0.7.1, ggdag-0.2.7, ggExtra-0.10.0, ggfan-0.1.3, ggforce-0.4.1, ggformula-0.10.2, ggfun-0.0.9, ggh4x-0.2.3, ggnetwork-0.5.12, ggplot2-3.4.1, ggplotify-0.1.0, ggpubr-0.6.0, ggraph-2.1.0, ggrepel-0.9.3, ggridges-0.5.4, ggsci-3.0.0, ggsignif-0.6.4, ggstance-0.3.6, ggvenn-0.1.9, ggvis-0.4.8, gh-1.4.0, GillespieSSA-0.6.2, git2r-0.31.0, gitcreds-0.1.2, GJRM-0.2-6.1, glasso-1.11, gld-2.6.6, gllvm-1.4.1, glmmML-1.1.4, glmmTMB-1.1.5, glmnet-4.1-6, GlobalOptions-0.1.2, globals-0.16.2, glue-1.6.2, gmm-1.7, gmodels-2.18.1.1, gmp-0.7-1, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.1, gower-1.0.1, GPArotation-2022.10-2, gplots-3.1.3, graphics, graphlayouts-0.8.4, grDevices, grf-2.2.1, grid, gridBase-0.4-7, gridExtra-2.3, gridGraphics-0.5-1, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.2, gsalib-2.2.1, gsl-2.1-8, gsw-1.1-1, gt-0.8.0, gtable-0.3.1, gtools-3.9.4, gtsummary-1.7.0, GUTS-1.2.3, gWidgets2-1.0-9, gWidgets2tcltk-1.0-8, GxEScanR-2.0.2, h2o-3.40.0.1, hal9001-0.4.3, haldensify-0.2.3, hardhat-1.2.0, harmony-0.1.1, hash-2.2.6.2, haven-2.5.2, hdf5r-1.3.8, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HGNChelper-0.8.1, HiddenMarkov-1.8-13, highr-0.10, Hmisc-5.0-1, hms-1.1.2, Hmsc-3.0-13, htmlTable-2.4.1, htmltools-0.5.4, htmlwidgets-1.6.1, httpcode-0.3.0, httpuv-1.6.9, httr-1.4.5, httr2-0.2.2, huge-1.3.5, hunspell-3.0.2, hwriter-1.3.2.1, HWxtest-1.1.9, hypergeo-1.2-13, ica-1.0-3, IDPmisc-1.1.20, idr-1.3, ids-1.0.1, ie2misc-0.9.0, igraph-1.4.1, image.binarization-0.1.3, imager-0.42.18, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0.1, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interp-1.1-3, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-5, ipred-0.9-14, irace-3.5, irlba-2.3.5.1, ismev-1.42, Iso-0.0-18.1, isoband-0.2.7, ISOcodes-2022.09.29, ISOweek-0.6-2, iterators-1.0.14, itertools-0.1-3, JADE-2.0-3, janeaustenr-1.0.0, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-4, jpeg-0.1-10, jquerylib-0.1.4, jsonify-1.2.2, jsonlite-1.8.4, jstable-1.0.7, juicyjuice-0.1.0, kde1d-1.0.5, kedd-1.0.3, kernlab-0.9-32, KernSmooth-2.23-20, kinship2-1.9.6, klaR-1.7-1, knitr-1.42, KODAMA-2.4, kohonen-3.0.11, ks-1.14.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.10.0, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.3, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-30, lava-1.7.2.1, lavaan-0.6-15, lazy-1.2-18, lazyeval-0.2.2, LCFdata-2.0, lda-1.4.2, ldbounds-2.0.0, leafem-0.2.0, leaflet-2.1.2, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.4.3, lhs-1.1.6, libcoin-1.0-9, lifecycle-1.0.3, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-4, liquidSVM-1.2.4, listenv-0.9.0, lme4-1.1-32, LMERConvenienceFunctions-3.0, lmerTest-3.1-3, lmom-2.9, Lmoments-1.3-1, lmtest-0.9-40, lobstr-1.1.2, locfdr-1.1-8, locfit-1.5-9.7, logcondens-2.1.7, logger-0.2.2, logistf-1.24.1, logspline-2.1.19, longitudinal-1.1.13, longmemo-1.1-2, loo-2.5.1, lpSolve-5.6.18, lpSolveAPI-5.5.2.0-17.9, lqa-1.0-3, lsei-1.3-0, lslx-0.6.11, lubridate-1.9.2, lwgeom-0.2-11, magic-1.6-1, magick-2.7.4, magrittr-2.0.3, MALDIquant-1.22, manipulateWidget-0.11.1, mapproj-1.2.11, maps-3.4.1, maptools-1.1-6, markdown-1.5, MASS-7.3-58.3, Matching-4.10-8, MatchIt-4.5.1, mathjaxr-1.6-0, matlab-1.0.4, Matrix-1.5-3, matrixcalc-1.0-6, MatrixModels-0.5-1, matrixStats-0.63.0, maxLik-1.5-2, maxlike-0.1-9, maxnet-0.1.4, mboost-2.9-7, mclogit-0.9.6, mclust-6.0.0, mcmc-0.9-7, MCMCpack-1.6-3, mcmcse-1.5-0, mda-0.5-3, medflex-0.6-7, mediation-4.5.0, memisc-0.99.31.6, memoise-2.0.1, memuse-4.2-3, MESS-0.5.9, metadat-1.2-0, metafor-3.8-1, MetaUtility-2.1.2, methods, mets-1.3.2, mgcv-1.8-42, mgsub-1.7.3, mhsmm-0.4.16, mi-1.1, mice-3.15.0, miceadds-3.16-18, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-3, minqa-1.2.5, mirt-1.38.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.5, mitml-0.4-5, mitools-2.4, mixtools-2.0.0, mlbench-2.1-3, mlegp-3.1.9, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.1, mlrMBO-1.1.5.1, mltools-0.3.5, mnormt-2.1.1, ModelMetrics-1.2.2.2, modelr-0.1.10, modeltools-0.2-23, momentfit-0.3, moments-0.14.1, MonteCarlo-1.0.6, mosaicCore-0.9.2.1, mpath-0.4-2.23, mRMRe-2.1.2, msm-1.7, mstate-0.3.2, multcomp-1.4-23, multcompView-0.1-8, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.2.1, mvnfast-0.2.8, mvtnorm-1.1-3, nabor-0.5.0, naniar-1.0.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29.1, ncdf4-1.21, NCmisc-1.2.0, network-1.18.1, networkDynamic-0.11.3, networkLite-1.0.5, neuralnet-1.44.2, neuRosim-0.2-13, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.4, nlme-3.1-162, nloptr-2.0.3, NLP-0.2-1, nlsem-0.8, nnet-7.3-18, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-10.0, nortest-1.0-4, np-0.60-17, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.4.0, oce-1.7-10, OceanView-1.0.6, oddsratio-2.0.1, officer-0.6.2, openair-2.16-0, OpenMx-2.21.1, openssl-2.0.6, openxlsx-4.2.5.2, operator.tools-1.6.3, optextras-2019-12.4, optimParallel-1.0-2, optimr-2019-12.16, optimx-2022-4.30, optmatch-0.10.6, optparse-1.7.3, ordinal-2022.11-16, origami-1.0.7, oro.nifti-0.11.4, orthopolynom-1.0-6.1, osqp-0.6.0.8, outliers-0.15, packrat-0.9.1, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallel, parallelDist-0.2.6, parallelly-1.34.0, parallelMap-1.5.1, ParamHelpers-1.14.1, parsedate-1.3.1, party-1.3-13, partykit-1.2-18, pastecs-1.3.21, patchwork-1.1.2, pbapply-1.7-0, pbivnorm-0.6.0, pbkrtest-0.5.2, PCAmatchR-0.3.3, pcaPP-2.0-3, pdp-0.8.1, PearsonDS-1.2.3, pec-2022.05.04, penalized-0.9-52, penfa-0.1.1, peperr-1.4, PermAlgo-1.2, permute-0.9-7, phangorn-2.11.1, pheatmap-1.0.12, phylobase-0.8.10, phytools-1.5-1, pillar-1.8.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.4.0, pkgconfig-2.0.3, pkgdown-2.0.7, pkgload-1.3.2, pkgmaker-0.32.8, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.4, plotly-4.10.1, plotmo-3.6.2, plotrix-3.8-2, pls-2.8-1, plyr-1.8.8, PMA-1.2.1, png-0.1-8, PoissonSeq-1.1.2, poLCA-1.6.0.1, polspline-1.1.22, Polychrome-1.5.1, polyclip-1.10-4, polycor-0.8-1, polynom-1.4-1, posterior-1.4.1, ppcor-1.1, prabclus-2.3-2, pracma-2.4.2, praise-1.0.0, PresenceAbsence-1.1.11, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, princurve-2.1.6, pROC-1.18.0, processx-3.8.0, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, profvis-0.3.7, progress-1.2.2, progressr-0.13.0, projpred-2.4.0, promises-1.2.0.1, proto-1.0.0, proxy-0.4-27, proxyC-0.3.3, pryr-0.1.6, ps-1.7.2, pscl-1.5.5, pspline-1.0-19, psych-2.2.9, Publish-2023.01.17, pulsar-0.3.10, purrr-1.0.1, pvclust-2.2-0, qgam-1.3.4, qgraph-1.9.3, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quanteda-3.3.0, quantmod-0.4.20, quantreg-5.94, questionr-0.7.8, R.cache-0.16.0, R.matlab-3.7.0, R.methodsS3-1.8.2, R.oo-1.25.0, R.rsp-0.45.0, R.utils-2.12.2, R2WinBUGS-2.1-21, R6-2.5.1, ragg-1.2.5, random-0.2.6, randomForest-4.7-1.1, randomForestSRC-3.2.1, randtoolbox-2.0.4, rangeModelMetadata-0.1.4, ranger-0.14.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, rARPACK-0.11-0, raster-3.6-20, rasterVis-0.51.5, ratelimitr-0.4.1, RBesT-1.6-6, rbibutils-2.2.13, rbison-1.0.0, Rborist-0.3-2, RCAL-2.0, Rcgmin-2022-4.30, RCircos-1.2.2, rcmdcheck-1.4.0, RColorBrewer-1.1-3, Rcpp-1.0.10, RcppArmadillo-0.12.0.1.0, RcppEigen-0.3.3.9.3, RcppGSL-0.3.13, RcppParallel-5.1.7, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-2.1.3, RcppTOML-0.2.2, RCurl-1.98-1.10, rda-1.2-1, Rdpack-2.4, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.8.0, readr-2.1.4, readxl-1.4.2, rebird-1.3.0, recipes-1.0.5, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.9.3, relsurv-2.2-9, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.2, rentrez-1.2.3, renv-0.17.1, reprex-2.0.2, resample-0.6, reshape-0.8.9, reshape2-1.4.4, reticulate-1.28, rex-1.2.1, rgbif-3.7.5, RGCCA-2.1.2, rgdal-1.6-5, rgeos-0.6-2, rgexf-0.16.2, rgl-1.0.1, Rglpk-0.6-4, RhpcBLASctl-0.23-42, ridge-3.3, ridigbio-0.3.6, RInside-0.2.18, rio-0.5.29, riskRegression-2022.11.28, ritis-1.0.0, RItools-0.3-3, rJava-1.0-6, rjson-0.2.21, RJSONIO-1.3-1.8, rlang-1.1.0, rle-0.9.2, rlecuyer-0.3-5, rlemon-0.2.1, rlist-0.4.6.2, rmarkdown-2.20, rmeta-3.0, Rmpfr-0.9-1, rms-6.5-0, RMTstat-0.3.1, rncl-0.8.7, rnetcarto-0.2.6, RNeXML-2.4.11, rngtools-1.5.2, rngWELL-0.10-9, RNifti-1.4.5, robustbase-0.95-0, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.2, rootSolve-1.8.2.3, roptim-0.1.6, rotl-3.0.14, roxygen2-7.2.3, rpact-3.3.4, rpart-4.1.19, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.3, rrcov-1.7-2, rredlist-0.7.1, rsample-1.1.1, rsconnect-0.8.29, Rserve-1.8-11, RSNNS-0.4-15, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.3.0, Rssa-1.0.5, rstan-2.21.8, rstantools-2.3.0, rstatix-0.7.2, rstudioapi-0.14, rtdists-0.11-5, Rtsne-0.16, Rttf2pt1-1.3.12, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.2, rvertnet-0.8.2, rvest-1.0.3, rvinecopulib-0.6.3.1.1, Rvmmin-2018-4.17.1, RWeka-0.4-46, RWekajars-3.9.3-2, s2-1.1.2, sampling-2.9, sandwich-3.0-2, sass-0.4.5, SBdecomp-1.2, scales-1.2.1, scam-1.2-13, scatterpie-0.1.8, scatterplot3d-0.3-43, scs-3.2.4, sctransform-0.3.5, SDMTools-1.1-221.2, seewave-2.2.0, segmented-1.6-2, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-6, sendmailR-1.4-0, sensemakr-0.1.4, sentometrics-1.0.0, seqinr-4.2-23, servr-0.25, sessioninfo-1.2.2, setRNG-2022.4-1, sf-1.0-11, sfheaders-0.4.2, sfsmisc-1.1-14, shadowtext-0.1.2, shape-1.4.6, shapefiles-0.7.2, shiny-1.7.4, shinycssloaders-1.0.0, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.5, slam-0.1-50, slider-0.3.0, sm-2.2-5.7.1, smoof-1.6.0.3, smoother-1.1, sn-2.1.0, sna-2.7-1, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.2, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7-1, sp-1.6-0, spaa-0.2.2, spam-2.9-1, spaMM-4.2.1, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-16, spatstat-3.0-3, spatstat.core-2.4-4, spatstat.data-3.0-1, spatstat.explore-3.1-0, spatstat.geom-3.1-0, spatstat.linnet-3.0-6, spatstat.model-3.2-1, spatstat.random-3.1-4, spatstat.sparse-3.0-1, spatstat.utils-3.0-2, spData-2.2.2, splines, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.1, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.3, stars-0.6-0, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.5.0, statnet-2019.6, statnet.common-4.8.0, stats, stats4, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.10, stringi-1.7.12, stringr-1.5.0, strucchange-1.5-3, styler-1.9.1, subplex-1.8, SuperLearner-2.0-28, SuppDists-1.1-9.7, survey-4.1-1, survival-3.5-5, survivalROC-1.0.3.1, svd-0.5.3, svglite-2.1.1, swagger-3.33.1, symmoments-1.2.1, sys-3.4.1, systemfonts-1.0.4, tableone-0.13.2, tabletools-0.1.0, tau-0.0-24, taxize-0.9.100, tcltk, tcltk2-1.2-11, tclust-1.5-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.1.1, terra-1.7-18, testit-0.13, testthat-3.1.7, textcat-1.0-8, textplot-0.2.2, textshaping-0.3.6, TFisher-0.2.0, TH.data-1.1-1, threejs-0.3.3, tibble-3.2.0, tictoc-1.1, tidygraph-1.2.3, tidyr-1.3.0, tidyselect-1.2.0, tidytext-0.4.1, tidytree-0.4.2, tidyverse-2.0.0, tiff-0.1-11, timechange-0.2.0, timeDate-4022.108, timereg-2.0.5, tinytex-0.44, tkrplot-0.0-27, tm-0.7-11, tmap-3.3-3, tmaptools-3.1-1, TMB-1.9.2, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.5, tokenizers-0.3.0, tools, topicmodels-0.2-13, TraMineR-2.2-6, tree-1.0-43, triebeard-0.4.1, trimcluster-0.1-5, tripack-1.3-9.1, TruncatedNormal-2.2.2, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-53, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.3, tuneR-1.4.3, twang-2.5, tweedie-2.3.5, tweenr-2.0.2, tzdb-0.3.0, ucminf-1.1-4.1, udpipe-0.8.11, umap-0.2.10.0, unbalanced-2.0, unikn-0.8.0, uniqueAtomMat-0.1-3-2, units-0.8-1, unmarked-1.2.5, UpSetR-1.4.0, urca-1.3-3, urlchecker-1.0.1, urltools-1.7.3, uroot-2.1-2, usethis-2.1.6, utf8-1.2.3, utils, uuid-1.1-0, V8-4.2.2, varhandle-2.0.5, vcd-1.4-11, vcfR-1.14.0, vctrs-0.6.0, vegan-2.6-4, VennDiagram-1.7.3, VGAM-1.1-8, VIM-6.2.2, VineCopula-2.4.5, vioplot-0.4.0, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.1, visdat-0.6.0, visNetwork-2.1.2, vroom-1.6.1, VSURF-1.2.0, waldo-0.4.0, warp-0.2.0, waveslim-1.8.4, wdm-0.2.3, webshot-0.5.4, webutils-1.1, weights-1.0.4, WeightSVM-1.7-11, wellknown-0.7.4, whisker-0.4.1, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.5.0, wk-0.7.1, word2vec-0.3.4, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.4.0, xfun-0.37, xgboost-1.7.3.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.13, xml2-1.3.3, xopen-1.0.0, xtable-1.8-4, xts-0.13.0, yaImpute-1.0-33, yaml-2.3.7, yulab.utils-0.0.6, zeallot-0.1.0, zip-2.2.2, zoo-1.8-11 + +### R/4.2.1-foss-2022a + +This is a list of extensions included in the module: + +abc-2.2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-19, ADGofTest-0.3, admisc-0.29, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-3.4, alabama-2022.4-1, AlgDesign-1.2.1, alluvial-0.1-2, AMAPVox-0.12.0, animation-2.7, aod-1.3.2, apcluster-1.4.10, ape-5.6-2, aplot-0.1.9, argparse-2.1.5, aricode-1.0.2, arm-1.12-2, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-10, aws-2.5-1, awsMethods-1.1-1, backports-1.4.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base, base64-2.0, base64enc-0.1-3, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.7, BayesLogit-2.1, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.9.0, BB-2019.10-1, BBmisc-1.12, bbmle-1.0.25, BCEE-1.3.0, BDgraph-2.67, bdsmatrix-1.3-6, beanplot-1.3.1, beeswarm-0.4.0, berryFunctions-1.22.0, betareg-3.1-4, BH-1.78.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.6, bigmemory-4.6.1, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-3, biom-0.3.12, biomod2-3.5.1, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.4-3, blob-1.2.3, BMA-3.18.17, bmp-0.3, bnlearn-4.7.1, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-7, brglm-0.7.2, bridgedist-0.1.1, bridgesampling-1.1-2, brio-1.1.3, brms-2.17.0, Brobdingnag-1.2-7, broom-0.8.0, broom.helpers-1.7.0, broom.mixed-0.2.9.4, bslib-0.3.1, bst-0.3-23, cachem-1.0.6, Cairo-1.5-15, calibrate-1.7.7, callr-3.7.0, car-3.1-0, carData-3.0-5, caret-6.0-92, catlearn-0.9.1, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, changepoint-2.2.4, checkmate-2.1.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-57, circlize-0.4.15, circular-0.4-95, class-7.3-20, classInt-0.4-7, cld2-1.2.4, cli-3.3.0, clipr-0.8.0, clisymbols-1.2.0, clue-0.3-61, cluster-2.1.3, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.4, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.2, cobalt-4.3.2, cobs-1.3-5, coda-0.19-4, codetools-0.2-18, coin-1.4-2, collapse-1.8.6, colorspace-2.0-3, colourpicker-1.1.1, combinat-0.0-8, ComICS-1.0.4, commonmark-1.8.0, compiler, ComplexUpset-1.3.3, compositions-2.0-4, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.3.0, contfrac-1.1-12, copCAR-2.0-4, copula-1.1-0, corpcor-1.6.10, corrplot-0.92, covr-3.5.1, CovSel-1.2.1, covsim-1.0.0, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-17, cpp11-0.4.2, crayon-1.5.1, credentials-1.3.2, crfsuite-0.4.1, crosstalk-1.2.0, crul-1.2.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.4, cubelyr-1.0.1, curl-4.3.2, cvAUC-1.1.4, CVST-0.2-3, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.2, data.tree-1.0.0, DataCombine-0.2.21, datasets, date-1.2-39, dbarts-0.9-22, DBI-1.1.3, dbplyr-2.2.0, dbscan-1.1-11, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-39, debugme-1.1.0, deldir-1.0-6, dendextend-1.15.2, DEoptim-2.2-6, DEoptimR-1.0-11, DepthProc-2.1.5, Deriv-4.1.3, desc-1.4.1, DescTools-0.99.45, deSolve-1.32, devtools-2.4.3, dfidx-0.0-4, DHARMa-0.4.5, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.9, DiceKriging-1.6.0, dichromat-2.0-0.1, diffobj-0.3.5, digest-0.6.29, dimRed-0.2.5, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-5, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, distributional-0.3.0, DistributionUtils-0.6-0, diveRsity-1.9.90, dlm-1.1-6, DMCfun-2.0.2, doc2vec-0.2.0, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.2, doSNOW-1.0.20, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.9, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.23, dtangle-2.0.9, dtplyr-1.2.1, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-11, earth-5.3.1, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.3, ellipsis-0.3.2, elliptic-1.4-0, emdbook-1.3.12, emoa-0.5-0.1, emulator-1.2-21, energy-1.7-10, ENMeval-2.0.3, entropy-1.3.1, EnvStats-2.7.0, epitools-0.5-10.1, ergm-4.2.2, ergm.count-4.1.1, evaluate-0.15, EValue-4.1.3, evd-2.3-6, Exact-3.1, expm-0.999-6, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.18, extrafontdb-1.0, extRemes-2.1-2, FactoMineR-2.4, FactorCopula-0.8, fail-1.3, fansi-1.0.3, farver-2.1.0, fastcluster-1.2.3, fastDummies-1.6.3, fasterize-1.0.3, fastICA-1.2-3, fastmap-1.1.0, fastmatch-1.1-3, fdrtool-1.2.17, feather-0.3.5, ff-4.0.7, ffbase-0.13.3, fftw-1.0-7, fftwtools-0.9-11, fields-13.3, filehash-2.4-3, finalfit-1.0.4, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-8, flashClust-1.01-2, flexclust-1.4-1, flexmix-2.3-18, fma-2.4, FME-1.3.6.2, fmri-1.9.6, FNN-1.1.3.1, fontawesome-0.2.2, forcats-0.5.1, foreach-1.5.2, forecast-8.16, foreign-0.8-82, formatR-1.12, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.2, furrr-0.3.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.26.1, future.apply-1.9.0, gam-1.20.1, gamlss-5.4-3, gamlss.data-6.0-2, gamlss.dist-6.0-3, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-6, gap.datasets-0.0.5, gapfill-0.9.6-1, gargle-1.2.0, gaussquad-1.0-3, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0.1, gdistance-1.3-6, gee-4.13-23, geeM-0.10.1, geepack-1.3.4, geex-1.0.12, geiger-2.0.10, GeneNet-1.2.16, generics-0.1.2, genoPlotR-0.8.11, GenSA-1.1.7, geojsonsf-2.0.3, geometries-0.2.0, geometry-0.4.6, gert-1.6.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.2, ggbeeswarm-0.6.0, ggdag-0.2.4, ggExtra-0.10.0, ggfan-0.1.3, ggforce-0.3.3, ggformula-0.10.2, ggfun-0.0.9, ggh4x-0.2.2, ggnetwork-0.5.10, ggplot2-3.3.6, ggplotify-0.1.0, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.3, ggstance-0.3.5, ggvenn-0.1.9, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.2, git2r-0.30.1, gitcreds-0.1.1, GJRM-0.2-6, glasso-1.11, gld-2.6.4, gllvm-1.3.1, glmmML-1.1.3, glmmTMB-1.1.3, glmnet-4.1-4, GlobalOptions-0.1.2, globals-0.15.0, glue-1.6.2, gmm-1.6-6, gmodels-2.18.1.1, gmp-0.6-5, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.0, gower-1.0.0, GPArotation-2022.4-1, gplots-3.1.3, graphics, graphlayouts-0.8.0, grDevices, grf-2.1.0, grid, gridBase-0.4-7, gridExtra-2.3, gridGraphics-0.5-1, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.2, gsalib-2.1, gsl-2.1-7.1, gsw-1.0-6, gt-0.6.0, gtable-0.3.0, gtools-3.9.2.2, gtsummary-1.6.1, GUTS-1.2.3, gWidgets2-1.0-9, gWidgets2tcltk-1.0-8, GxEScanR-2.0.2, h2o-3.36.1.2, hal9001-0.4.3, hardhat-1.1.0, harmony-0.1.0, hash-2.2.6.2, haven-2.5.0, hdf5r-1.3.5, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HGNChelper-0.8.1, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.7-0, hms-1.1.1, Hmsc-3.0-11, htmlTable-2.4.0, htmltools-0.5.2, htmlwidgets-1.5.4, httpcode-0.3.0, httpuv-1.6.5, httr-1.4.3, huge-1.3.5, hunspell-3.0.1, hwriter-1.3.2.1, HWxtest-1.1.9, hypergeo-1.2-13, ica-1.0-2, IDPmisc-1.1.20, idr-1.3, ids-1.0.1, ie2misc-0.8.8, igraph-1.3.2, image.binarization-0.1.2, imager-0.42.13, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0.1, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-13, irace-3.4.1, irlba-2.3.5, ismev-1.42, Iso-0.0-18.1, isoband-0.2.5, ISOcodes-2022.01.10, ISOweek-0.6-2, iterators-1.0.14, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-3, jpeg-0.1-9, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.8.0, jstable-1.0.7, kde1d-1.0.4, kedd-1.0.3, kernlab-0.9-31, KernSmooth-2.23-20, kinship2-1.9.6, klaR-1.7-0, knitr-1.39, KODAMA-1.9, kohonen-3.0.11, ks-1.13.5, labdsv-2.0-1, labeling-0.4.2, labelled-2.9.1, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.3, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-29, lava-1.6.10, lavaan-0.6-11, lazy-1.2-17, lazyeval-0.2.2, LCFdata-2.0, lda-1.4.2, ldbounds-2.0.0, leafem-0.2.0, leaflet-2.1.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.4.2, lhs-1.1.5, libcoin-1.0-9, lifecycle-1.0.1, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-4, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-29, LMERConvenienceFunctions-3.0, lmerTest-3.1-3, lmom-2.9, Lmoments-1.3-1, lmtest-0.9-40, lobstr-1.1.2, locfdr-1.1-8, locfit-1.5-9.5, logcondens-2.1.6, logger-0.2.2, logistf-1.24.1, logspline-2.1.17, longitudinal-1.1.13, longmemo-1.1-2, loo-2.5.1, lpSolve-5.6.15, lpSolveAPI-5.5.2.0-17.7, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.8.0, lwgeom-0.2-8, magic-1.6-0, magick-2.7.3, magrittr-2.0.3, MALDIquant-1.21, manipulateWidget-0.11.1, mapproj-1.2.8, maps-3.4.0, maptools-1.1-4, markdown-1.1, MASS-7.3-57, Matching-4.10-2, MatchIt-4.4.0, mathjaxr-1.6-0, matlab-1.0.4, Matrix-1.4-1, matrixcalc-1.0-5, MatrixModels-0.5-0, matrixStats-0.62.0, maxLik-1.5-2, maxlike-0.1-8, maxnet-0.1.4, mboost-2.9-7, mclust-5.4.10, mcmc-0.9-7, MCMCpack-1.6-3, mcmcse-1.5-0, mda-0.5-3, medflex-0.6-7, mediation-4.5.0, memoise-2.0.1, memuse-4.2-1, MESS-0.5.9, metadat-1.2-0, metafor-3.4-0, MetaUtility-2.1.2, methods, mets-1.2.9, mgcv-1.8-40, mgsub-1.7.3, mhsmm-0.4.16, mi-1.1, mice-3.14.0, miceadds-3.13-12, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-2, minqa-1.2.4, mirt-1.36.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.5, mitml-0.4-3, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.9, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.0, mlrMBO-1.1.5.1, mltools-0.3.5, mnormt-2.1.0, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14.1, MonteCarlo-1.0.6, mosaicCore-0.9.2.1, mpath-0.4-2.22, mRMRe-2.1.2, msm-1.6.9, mstate-0.3.2, multcomp-1.4-19, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.2.1, mvnfast-0.2.7, mvtnorm-1.1-3, nabor-0.5.0, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, ncdf4-1.19, NCmisc-1.1.6, network-1.17.2, networkDynamic-0.11.2, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-158, nloptr-2.0.3, NLP-0.2-1, nlsem-0.8, nnet-7.3-17, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-10.0, nortest-1.0-4, np-0.60-11, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.3.2, oce-1.7-6, OceanView-1.0.6, oddsratio-2.0.1, openair-2.10-0, OpenMx-2.20.6, openssl-2.0.2, openxlsx-4.2.5, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2022-4.30, optmatch-0.10.3, optparse-1.7.1, ordinal-2019.12-10, origami-1.0.5, orthopolynom-1.0-6, outliers-0.15, packrat-0.8.0, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallel, parallelDist-0.2.6, parallelly-1.32.0, parallelMap-1.5.1, ParamHelpers-1.14, parsedate-1.3.0, party-1.3-10, partykit-1.2-16, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.5-0, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.2, pcaPP-2.0-1, pdp-0.8.1, PearsonDS-1.2.2, pec-2022.05.04, penalized-0.9-52, penfa-0.1.1, peperr-1.4, PermAlgo-1.2, permute-0.9-7, phangorn-2.9.0, pheatmap-1.0.12, phylobase-0.8.10, phytools-1.0-3, pillar-1.7.0, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.3.1, pkgconfig-2.0.3, pkgload-1.2.4, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.3, plotly-4.10.0, plotmo-3.6.2, plotrix-3.8-2, pls-2.8-0, plyr-1.8.7, PMA-1.2.1, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.6.0.1, polspline-1.1.20, polyclip-1.10-0, polycor-0.8-1, polynom-1.4-1, posterior-1.2.2, ppcor-1.1, prabclus-2.3-2, pracma-2.3.8, praise-1.0.0, PresenceAbsence-1.1.10, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, pROC-1.18.0, processx-3.6.1, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.10.1, projpred-2.1.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-27, proxyC-0.3.3, pryr-0.1.5, ps-1.7.1, pscl-1.5.5, pspline-1.0-19, psych-2.2.5, Publish-2020.12.23, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.4, qgraph-1.9.2, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quanteda-3.2.3, quantmod-0.4.20, quantreg-5.93, questionr-0.7.7, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.2, R.oo-1.25.0, R.rsp-0.44.0, R.utils-2.11.0, R2WinBUGS-2.1-21, R6-2.5.1, random-0.2.6, randomForest-4.7-1.1, randomForestSRC-3.1.0, randtoolbox-2.0.1, rangeModelMetadata-0.1.4, ranger-0.14.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.5-15, rasterVis-0.51.2, ratelimitr-0.4.1, RBesT-1.6-6, rbibutils-2.2.8, rbison-1.0.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2022-4.30, RCircos-1.2.2, rcmdcheck-1.4.0, RColorBrewer-1.1-3, Rcpp-1.0.8.3, RcppArmadillo-0.11.2.0.0, RcppEigen-0.3.3.9.2, RcppGSL-0.3.11, RcppParallel-5.1.5, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-2.1.3, RcppTOML-0.1.7, RCurl-1.98-1.7, rda-1.0.2-2.1, Rdpack-2.3.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-2.1.2, readxl-1.4.0, rebird-1.3.0, recipes-0.2.0, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, relsurv-2.2-7, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.2, rentrez-1.2.3, renv-0.15.5, reprex-2.0.1, resample-0.6, reshape-0.8.9, reshape2-1.4.4, reticulate-1.25, rex-1.2.1, rgbif-3.7.2, RGCCA-2.1.2, rgdal-1.5-32, rgeos-0.5-9, rgexf-0.16.2, rgl-0.109.2, Rglpk-0.6-4, RhpcBLASctl-0.21-247.1, ridigbio-0.3.5, RInside-0.2.17, rio-0.5.29, riskRegression-2022.03.22, ritis-1.0.0, RItools-0.1-18, rJava-1.0-6, rjson-0.2.21, RJSONIO-1.3-1.6, rlang-1.0.2, rle-0.9.2, rlecuyer-0.3-5, rlemon-0.2.0, rlist-0.4.6.2, rmarkdown-2.14, rmeta-3.0, Rmpfr-0.8-9, Rmpi-0.6-9.2, rms-6.3-0, RMTstat-0.3.1, rncl-0.8.6, rnetcarto-0.2.5, RNeXML-2.4.7, rngtools-1.5.2, rngWELL-0.10-7, robustbase-0.95-0, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.3, roptim-0.1.6, rotl-3.0.12, roxygen2-7.2.0, rpact-3.3.0, rpart-4.1.16, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.3, rrcov-1.7-0, rredlist-0.7.0, rsconnect-0.8.26, Rserve-1.8-10, RSNNS-0.4-14, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.2.14, Rssa-1.0.4, rstan-2.21.5, rstantools-2.2.0, rstatix-0.7.0, rstudioapi-0.13, rtdists-0.11-5, Rtsne-0.16, Rttf2pt1-1.3.10, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvertnet-0.8.2, rvest-1.0.2, rvinecopulib-0.6.1.1.3, Rvmmin-2018-4.17.1, RWeka-0.4-44, RWekajars-3.9.3-2, s2-1.0.7, sampling-2.9, sandwich-3.0-2, sass-0.4.1, SBdecomp-1.2, scales-1.2.0, scam-1.2-12, scatterpie-0.1.8, scatterplot3d-0.3-41, sctransform-0.3.3, SDMTools-1.1-221.2, seewave-2.2.0, segmented-1.6-0, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-6, sendmailR-1.2-1.1, sensemakr-0.1.4, sentometrics-1.0.0, seqinr-4.2-16, servr-0.24, sessioninfo-1.2.2, setRNG-2022.4-1, sf-1.0-7, sfheaders-0.4.0, sfsmisc-1.1-13, shadowtext-0.1.2, shape-1.4.6, shapefiles-0.7, shiny-1.7.1, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.4, slam-0.1-50, sm-2.2-5.7, smoof-1.6.0.3, smoother-1.1, sn-2.0.2, sna-2.7, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.5-0, spaa-0.2.2, spam-2.8-0, spaMM-3.12.0, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-15, spatstat-2.3-4, spatstat.core-2.4-4, spatstat.data-2.2-0, spatstat.geom-2.4-0, spatstat.linnet-2.3-2, spatstat.random-2.2-0, spatstat.sparse-2.1-1, spatstat.utils-2.3-1, spData-2.0.1, splines, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.0, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.3, stars-0.5-5, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.4.36, statnet-2019.6, statnet.common-4.6.0, stats, stats4, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.8, stringi-1.7.6, stringr-1.4.0, strucchange-1.5-3, styler-1.7.0, subplex-1.8, SuperLearner-2.0-28, SuppDists-1.1-9.7, survey-4.1-1, survival-3.3-1, survivalROC-1.0.3, svd-0.5.1, svglite-2.1.1, swagger-3.33.1, symmoments-1.2.1, sys-3.4, systemfonts-1.0.4, tableone-0.13.2, tau-0.0-24, taxize-0.9.100, tcltk, tcltk2-1.2-11, tclust-1.5-1, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.1.0, terra-1.5-34, testit-0.13, testthat-3.1.4, textcat-1.0-8, textplot-0.2.2, TFisher-0.2.0, TH.data-1.1-1, threejs-0.3.3, tibble-3.1.7, tictoc-1.0.1, tidygraph-1.2.1, tidyr-1.2.0, tidyselect-1.1.2, tidytext-0.3.3, tidytree-0.4.1, tidyverse-1.3.1, tiff-0.1-11, timeDate-3043.102, timereg-2.0.2, tinytex-0.40, tkrplot-0.0-26, tm-0.7-8, tmap-3.3-3, tmaptools-3.1-1, TMB-1.9.0, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.5, tokenizers-0.2.1, tools, topicmodels-0.2-12, TraMineR-2.2-4, tree-1.0-42, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-51, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.3, tuneR-1.4.0, tvem-1.3.1, twang-2.5, tweedie-2.3.3, tweenr-1.0.2, tzdb-0.3.0, ucminf-1.1-4, udpipe-0.8.11, unbalanced-2.0, unikn-0.8.0, uniqueAtomMat-0.1-3-2, units-0.8-0, unmarked-1.2.5, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.1.6, utf8-1.2.2, utils, uuid-1.1-0, V8-4.2.0, varhandle-2.0.5, vcd-1.4-10, vcfR-1.12.0, vctrs-0.4.1, vegan-2.6-2, VennDiagram-1.7.3, VGAM-1.1-6, VIM-6.1.1, VineCopula-2.4.4, vioplot-0.3.7, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.1.0, vroom-1.5.7, VSURF-1.1.0, waldo-0.4.0, waveslim-1.8.3, wdm-0.2.3, webshot-0.5.3, webutils-1.1, weights-1.0.4, WeightSVM-1.7-9, wellknown-0.7.4, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.5.0, wk-0.6.0, word2vec-0.3.4, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.4.0, xfun-0.31, xgboost-1.6.0.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.10, xml2-1.3.3, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.3.5, yulab.utils-0.0.5, zeallot-0.1.0, zip-2.2.0, zoo-1.8-10 + +### R/4.2.0-foss-2021b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-19, ADGofTest-0.3, admisc-0.26, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-3.3, alabama-2022.4-1, AlgDesign-1.2.0, alluvial-0.1-2, animation-2.7, aod-1.3.2, apcluster-1.4.9, ape-5.6-2, argparse-2.1.5, arm-1.12-2, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-5, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.2, audio-0.1-10, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.4.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.9, batchmeans-1.0-4, BayesianTools-0.1.7, BayesLogit-2.1, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.9.0, BB-2019.10-1, BBmisc-1.12, bbmle-1.0.24, BCEE-1.3.0, BDgraph-2.66, bdsmatrix-1.3-4, beanplot-1.3.1, beeswarm-0.4.0, betareg-3.1-4, BH-1.78.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.5, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-3, biom-0.3.12, biomod2-3.5.1, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.4-1, blob-1.2.3, BMA-3.18.17, bmp-0.3, bnlearn-4.7.1, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-7, brglm-0.7.2, bridgedist-0.1.1, bridgesampling-1.1-2, brio-1.1.3, brms-2.17.0, Brobdingnag-1.2-7, broom-0.8.0, broom.helpers-1.7.0, broom.mixed-0.2.9.4, bslib-0.3.1, bst-0.3-23, c-o, cachem-1.0.6, Cairo-1.5-15, calibrate-1.7.7, callr-3.7.0, car-3.0-12, carData-3.0-5, caret-6.0-92, catlearn-0.9.1, caTools-1.18.2, CBPS-0.23, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.1.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-56, circlize-0.4.14, circular-0.4-94.1, class-7.3-20, classInt-0.4-3, cli-3.3.0, clipr-0.8.0, clisymbols-1.2.0, clue-0.3-60, cluster-2.1.3, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.4, clValid-0.7, cmprsk-2.2-11, cNORM-3.0.1, cobalt-4.3.2, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-2, collapse-1.7.6, colorspace-2.0-3, colourpicker-1.1.1, combinat-0.0-8, ComICS-1.0.4, commonmark-1.8.0, compositions-2.0-4, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.3.0, contfrac-1.1-12, copCAR-2.0-4, copula-1.0-1, corpcor-1.6.10, corrplot-0.92, covr-3.5.1, CovSel-1.2.1, covsim-0.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.4.2, crayon-1.5.1, credentials-1.3.2, crosstalk-1.2.0, crul-1.2.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.4, cubelyr-1.0.1, curl-4.3.2, cvAUC-1.1.4, CVST-0.2-3, d-a, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.2, data.tree-1.0.0, DataCombine-0.2.21, date-1.2-39, dbarts-0.9-22, DBI-1.1.2, dbplyr-2.1.1, dcurver-0.9.2, ddalpha-1.3.13, deal-1.2-39, debugme-1.1.0, deldir-1.0-6, dendextend-1.15.2, DEoptim-2.2-6, DEoptimR-1.0-11, Deriv-4.1.3, desc-1.4.1, DescTools-0.99.44, deSolve-1.32, devtools-2.4.3, dfidx-0.0-4, DHARMa-0.4.5, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.9, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.5, digest-0.6.29, dimRed-0.2.5, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-5, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, distributional-0.3.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-2.0.2, docstring-1.0.0, doMC-1.3.8, doParallel-1.0.17, doRNG-1.8.2, doSNOW-1.0.20, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.8, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.22, dtangle-2.0.9, dtplyr-1.2.1, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-9, earth-5.3.1, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.2, elliptic-1.4-0, emdbook-1.3.12, emulator-1.2-21, energy-1.7-10, ENMeval-2.0.3, entropy-1.3.1, EnvStats-2.7.0, ergm-4.1.2, ergm.count-4.0.2, evaluate-0.15, EValue-4.1.3, evd-2.3-6, Exact-3.1, expm-0.999-6, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.18, extrafontdb-1.0, extRemes-2.1-1, FactoMineR-2.4, FactorCopula-0.8, fail-1.3, fansi-1.0.3, farver-2.1.0, fastcluster-1.2.3, fasterize-1.0.3, fastICA-1.2-3, fastmap-1.1.0, fastmatch-1.1-3, fdrtool-1.2.17, feather-0.3.5, ff-4.0.5, ffbase-0.13.3, fftw-1.0-7, fftwtools-0.9-11, fields-13.3, filehash-2.4-3, finalfit-1.0.4, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-8, flashClust-1.01-2, flexclust-1.4-1, flexmix-2.3-17, fma-2.4, FME-1.3.6.2, fmri-1.9.6, FNN-1.1.3, fontawesome-0.2.2, forcats-0.5.1, foreach-1.5.2, forecast-8.16, foreign-0.8-82, formatR-1.12, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.2, furrr-0.2.3, futile.logger-1.4.3, futile.options-1.0.1, future-1.25.0, future.apply-1.9.0, g-r, g-r, g-r, gam-1.20.1, gamlss-5.4-3, gamlss.data-6.0-2, gamlss.dist-6.0-3, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-1, gapfill-0.9.6-1, gargle-1.2.0, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-22, geeM-0.10.1, geepack-1.3.3, geex-1.0.12, geiger-2.0.7, GeneNet-1.2.16, generics-0.1.2, genoPlotR-0.8.11, GenSA-1.1.7, geojsonsf-2.0.2, geometries-0.2.0, geometry-0.4.6, gert-1.6.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.2, ggbeeswarm-0.6.0, ggdag-0.2.4, ggExtra-0.10.0, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.10, ggplot2-3.3.5, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.3, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.2, git2r-0.30.1, gitcreds-0.1.1, GJRM-0.2-6, glasso-1.11, gld-2.6.4, gllvm-1.3.1, glmmML-1.1.2, glmmTMB-1.1.3, glmnet-4.1-4, GlobalOptions-0.1.2, globals-0.14.0, glue-1.6.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-5, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.0, gower-1.0.0, GPArotation-2022.4-1, gplots-3.1.3, graphlayouts-0.8.0, grf-2.1.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.2, gsalib-2.1, gsl-2.1-7.1, gsw-1.0-6, gt-0.5.0, gtable-0.3.0, gtools-3.9.2, gtsummary-1.6.0, GUTS-1.2.3, gWidgets2-1.0-9, gWidgets2tcltk-1.0-8, GxEScanR-2.0.2, h2o-3.36.0.4, hal9001-0.4.3, hardhat-0.2.0, harmony-0.1.0, hash-2.2.6.2, haven-2.5.0, hdf5r-1.3.5, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.7-0, hms-1.1.1, Hmsc-3.0-11, htmlTable-2.4.0, htmltools-0.5.2, htmlwidgets-1.5.4, httpcode-0.3.0, httpuv-1.6.5, httr-1.4.2, huge-1.3.5, hunspell-3.0.1, hwriter-1.3.2.1, HWxtest-1.1.9, hypergeo-1.2-13, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ids-1.0.1, ie2misc-0.8.8, igraph-1.3.1, image.binarization-0.1.2, imager-0.42.13, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0.1, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-12, irace-3.4.1, irlba-2.3.5, ismev-1.42, Iso-0.0-18.1, isoband-0.2.5, ISOcodes-2022.01.10, iterators-1.0.14, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-3, jpeg-0.1-9, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.8.0, jstable-1.0.7, kde1d-1.0.4, kedd-1.0.3, kernlab-0.9-30, KernSmooth-2.23-20, klaR-1.7-0, knitr-1.38, KODAMA-1.9, kohonen-3.0.11, ks-1.13.5, labdsv-2.0-1, labeling-0.4.2, labelled-2.9.0, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.3, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-29, lava-1.6.10, lavaan-0.6-11, lazy-1.2-17, lazyeval-0.2.2, lda-1.4.2, ldbounds-2.0.0, leafem-0.2.0, leaflet-2.1.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.9, lhs-1.1.5, libcoin-1.0-9, lifecycle-1.0.1, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-4, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-29, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-40, lobstr-1.1.1, locfdr-1.1-8, locfit-1.5-9.5, logcondens-2.1.6, logistf-1.24.1, logspline-2.1.17, longitudinal-1.1.13, longmemo-1.1-2, loo-2.5.1, lpSolve-5.6.15, lpSolveAPI-5.5.2.0-17.7, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.8.0, lwgeom-0.2-8, m-e, magic-1.6-0, magick-2.7.3, magrittr-2.0.3, MALDIquant-1.21, manipulateWidget-0.11.1, mapproj-1.2.8, maps-3.4.0, maptools-1.1-4, markdown-1.1, MASS-7.3-57, Matching-4.10-2, MatchIt-4.3.4, mathjaxr-1.6-0, matlab-1.0.2, Matrix-1.4-1, matrixcalc-1.0-5, MatrixModels-0.5-0, matrixStats-0.62.0, maxLik-1.5-2, maxlike-0.1-8, maxnet-0.1.4, mboost-2.9-6, mclust-5.4.9, mcmc-0.9-7, MCMCpack-1.6-3, mcmcse-1.5-0, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.1, memuse-4.2-1, metadat-1.2-0, metafor-3.4-0, MetaUtility-2.1.2, mets-1.2.9, mgcv-1.8-40, mgsub-1.7.3, mhsmm-0.4.16, mi-1.0, mice-3.14.0, miceadds-3.12-26, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-2, minqa-1.2.4, mirt-1.36.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.5, mitml-0.4-3, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.9, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14, MonteCarlo-1.0.6, mpath-0.4-2.22, mRMRe-2.1.2, msm-1.6.9, mstate-0.3.2, multcomp-1.4-18, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.2.1, mvnfast-0.2.7, mvtnorm-1.1-3, nabor-0.5.0, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, ncdf4-1.19, NCmisc-1.1.6, network-1.17.1, networkDynamic-0.11.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-157, nloptr-2.0.0, NLP-0.2-1, nlsem-0.8, nnet-7.3-17, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-10.0, nortest-1.0-4, np-0.60-11, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.3.2, oce-1.7-2, OceanView-1.0.6, oddsratio-2.0.1, openair-2.9-1, OpenMx-2.20.6, openssl-2.0.0, openxlsx-4.2.5, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2021-10.12, optmatch-0.10.0, optparse-1.7.1, ordinal-2019.12-10, origami-1.0.5, orthopolynom-1.0-5, outliers-0.15, p-a, packrat-0.7.0, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallelly-1.31.1, parallelMap-1.5.1, ParamHelpers-1.14, parsedate-1.3.0, party-1.3-9, partykit-1.2-15, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.5-0, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.2, pcaPP-1.9-74, pdp-0.7.0, PearsonDS-1.2.2, pec-2022.03.06, penalized-0.9-52, penfa-0.1.1, peperr-1.4, PermAlgo-1.1, permute-0.9-7, phangorn-2.8.1, pheatmap-1.0.12, phylobase-0.8.10, phytools-1.0-3, pillar-1.7.0, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.3.1, pkgconfig-2.0.3, pkgload-1.2.4, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.2, plotly-4.10.0, plotmo-3.6.1, plotrix-3.8-2, pls-2.8-0, plyr-1.8.7, PMA-1.2.1, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.6.0.1, polspline-1.1.20, polyclip-1.10-0, polycor-0.8-1, polynom-1.4-1, posterior-1.2.1, ppcor-1.1, prabclus-2.3-2, pracma-2.3.8, praise-1.0.0, PresenceAbsence-1.1.10, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, pROC-1.18.0, processx-3.5.3, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.10.0, projpred-2.1.1, promises-1.2.0.1, proto-1.0.0, proxy-0.4-26, pryr-0.1.5, ps-1.7.0, pscl-1.5.5, pspline-1.0-19, psych-2.2.3, Publish-2020.12.23, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.4, qgraph-1.9.2, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.88, questionr-0.7.7, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.11.0, R6-2.5.1, randomForest-4.7-1, randomForestSRC-3.1.0, randtoolbox-1.31.1, rangeModelMetadata-0.1.4, ranger-0.13.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.5-15, rasterVis-0.51.2, ratelimitr-0.4.1, rbibutils-2.2.8, rbison-1.0.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.2, rcmdcheck-1.4.0, RColorBrewer-1.1-3, Rcpp-1.0.8.3, RcppArmadillo-0.11.0.0.0, RcppEigen-0.3.3.9.2, RcppGSL-0.3.11, RcppParallel-5.1.5, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-2.1.3, RcppTOML-0.1.7, RCurl-1.98-1.6, rda-1.0.2-2.1, Rdpack-2.3, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-2.1.2, readxl-1.4.0, rebird-1.3.0, recipes-0.2.0, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, relsurv-2.2-7, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.2, rentrez-1.2.3, renv-0.15.5, reprex-2.0.1, resample-0.4, reshape-0.8.9, reshape2-1.4.4, reticulate-1.24, rex-1.2.1, rgbif-3.7.2, RGCCA-2.1.2, rgdal-1.5-31, rgeos-0.5-9, rgexf-0.16.2, rgl-0.108.3, Rglpk-0.6-4, RhpcBLASctl-0.21-247.1, ridigbio-0.3.5, RInside-0.2.17, rio-0.5.29, riskRegression-2022.03.22, ritis-1.0.0, RItools-0.1-18, rJava-1.0-6, rjson-0.2.21, RJSONIO-1.3-1.6, rlang-1.0.2, rle-0.9.2, rlecuyer-0.3-5, rlemon-0.2.0, rmarkdown-2.14, rmeta-3.0, Rmpfr-0.8-7, Rmpi-0.6-9.2, rms-6.3-0, RMTstat-0.3.1, rncl-0.8.6, rnetcarto-0.2.4, RNeXML-2.4.6, rngtools-1.5.2, rngWELL-0.10-7, robustbase-0.95-0, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.3, rotl-3.0.12, roxygen2-7.1.2, rpact-3.2.3, rpart-4.1.16, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.3, rrcov-1.7-0, rredlist-0.7.0, rsconnect-0.8.25, Rserve-1.8-10, RSNNS-0.4-14, Rsolnp-1.16, RSpectra-0.16-1, RSQLite-2.2.12, Rssa-1.0.4, rstan-2.21.5, rstantools-2.2.0, rstatix-0.7.0, rstudioapi-0.13, rtdists-0.11-5, Rtsne-0.16, Rttf2pt1-1.3.10, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvertnet-0.8.2, rvest-1.0.2, rvinecopulib-0.6.1.1.3, Rvmmin-2018-4.17.1, RWeka-0.4-44, RWekajars-3.9.3-2, s-p, s-t, s-t, s2-1.0.7, sampling-2.9, sandwich-3.0-1, sass-0.4.1, SBdecomp-1.2, scales-1.2.0, scam-1.2-12, scatterplot3d-0.3-41, sctransform-0.3.3, SDMTools-1.1-221.2, seewave-2.2.0, segmented-1.5-0, selectr-0.4-2, sem-3.1-15, semPLS-1.0-10, semTools-0.5-5, sendmailR-1.2-1, sensemakr-0.1.4, seqinr-4.2-8, servr-0.24, sessioninfo-1.2.2, setRNG-2022.4-1, sf-1.0-7, sfheaders-0.4.0, sfsmisc-1.1-13, shape-1.4.6, shapefiles-0.7, shiny-1.7.1, shinydashboard-0.7.2, shinyjs-2.1.0, shinystan-2.6.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.3, simex-1.8, SimSeq-1.4.0, SKAT-2.2.4, slam-0.1-50, sm-2.2-5.7, smoother-1.1, sn-2.0.2, sna-2.6, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-7, spaa-0.2.2, spam-2.8-0, spaMM-3.11.14, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-15, spatstat-2.3-4, spatstat.core-2.4-2, spatstat.data-2.2-0, spatstat.geom-2.4-0, spatstat.linnet-2.3-2, spatstat.random-2.2-0, spatstat.sparse-2.1-1, spatstat.utils-2.3-0, spData-2.0.1, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.0, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.3, stars-0.5-5, startupmsg-0.9.6, StatMatch-1.4.1, statmod-1.4.36, statnet-2019.6, statnet.common-4.5.0, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.8, stringi-1.7.6, stringr-1.4.0, strucchange-1.5-2, styler-1.7.0, subplex-1.8, SuperLearner-2.0-28, SuppDists-1.1-9.7, survey-4.1-1, survival-3.3-1, survivalROC-1.0.3, svd-0.5.1, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.13.2, taxize-0.9.100, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.0.2, terra-1.5-21, testit-0.13, testthat-3.1.3, TFisher-0.2.0, TH.data-1.1-0, threejs-0.3.3, tibble-3.1.6, tictoc-1.0.1, tidygraph-1.2.1, tidyr-1.2.0, tidyselect-1.1.2, tidytext-0.3.2, tidyverse-1.3.1, tiff-0.1-11, timeDate-3043.102, timereg-2.0.2, tinytex-0.38, tkrplot-0.0-26, tm-0.7-8, tmap-3.3-3, tmaptools-3.1-1, TMB-1.8.1, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.5, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-3, tree-1.0-41, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-50, tseriesChaos-0.1-13.1, tsna-0.3.5, tsne-0.1-3.1, TTR-0.24.3, tuneR-1.4.0, twang-2.5, tweedie-2.3.3, tweenr-1.0.2, tzdb-0.3.0, u-t, ucminf-1.1-4, unbalanced-2.0, unikn-0.8.0, uniqueAtomMat-0.1-3-2, units-0.8-0, unmarked-1.1.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.1.5, utf8-1.2.2, uuid-1.1-0, V8-4.1.0, vcd-1.4-9, vcfR-1.12.0, vctrs-0.4.1, vegan-2.6-2, VennDiagram-1.7.3, VGAM-1.1-6, VIM-6.1.1, VineCopula-2.4.3, vioplot-0.3.7, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.1.0, vroom-1.5.7, VSURF-1.1.0, waldo-0.4.0, waveslim-1.8.2, wdm-0.2.3, webshot-0.5.3, weights-1.0.4, WeightSVM-1.7-9, wellknown-0.7.4, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.3, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.5.0, wk-0.6.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.4.0, xfun-0.30, xgboost-1.6.0.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.9, xml2-1.3.3, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.3.5, zeallot-0.1.0, zip-2.2.0, zoo-1.8-10 + +### R/4.1.2-foss-2021b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-18, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.2, alabama-2015.3-1, AlgDesign-1.2.0, alluvial-0.1-2, AnalyzeFMRI-1.1-24, animation-2.7, aod-1.3.1, apcluster-1.4.9, ape-5.5, argparse-2.1.2, arm-1.12-2, askpass-1.1, asnipe-1.1.16, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-8, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.3.0, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, BayesLogit-2.1, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.1, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.24, BCEE-1.3.0, BDgraph-2.64, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.4.0, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.5, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-2, biom-0.3.12, biomod2-3.5.1, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.3-17, blob-1.2.2, BMA-3.18.15, bmp-0.3, bnlearn-4.7, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.2, bridgedist-0.1.0, bridgesampling-1.1-2, brio-1.1.2, brms-2.16.1, Brobdingnag-1.2-6, broom-0.7.10, broom.helpers-1.4.0, broom.mixed-0.2.7, bslib-0.3.1, bst-0.3-23, c-o, cachem-1.0.6, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.7.0, car-3.0-11, carData-3.0-4, caret-6.0-90, catlearn-0.8, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chkptstanr-0.1.1, chron-2.3-56, circlize-0.4.13, circular-0.4-93, class-7.3-19, classInt-0.4-3, cli-3.1.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-60, cluster-2.1.2, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cmprsk-2.2-11, cNORM-2.1.0, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-2, collapse-1.6.5, colorspace-2.0-2, colourpicker-1.1.1, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-2, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.2.0, copCAR-2.0-4, copula-1.0-1, corpcor-1.6.10, corrplot-0.90, covr-3.5.1, CovSel-1.2.1, covsim-0.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.4.0, crayon-1.4.2, credentials-1.3.1, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.2, cubelyr-1.0.1, curl-4.3.2, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.2, data.tree-1.0.0, DataCombine-0.2.21, date-1.2-39, dbarts-0.9-20, DBI-1.1.1, dbplyr-2.1.1, dcurver-0.9.2, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-1.0-6, dendextend-1.15.2, DEoptim-2.2-6, DEoptimR-1.0-9, Deriv-4.1.3, desc-1.4.0, DescTools-0.99.43, deSolve-1.30, devtools-2.4.2, dfidx-0.0-4, DHARMa-0.4.4, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.5, digest-0.6.28, dimRed-0.2.3, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-5, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, distributional-0.2.2, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-2.0.2, docstring-1.0.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.7, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.2.1, DT-0.19, dtangle-2.0.9, dtplyr-1.1.0, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-9, earth-5.3.1, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.2, emdbook-1.3.12, emulator-1.2-21, energy-1.7-8, ENMeval-2.0.1, entropy-1.3.1, EnvStats-2.4.0, ergm-4.1.2, ergm.count-4.0.2, evaluate-0.14, EValue-4.1.2, evd-2.3-3, Exact-3.0, expm-0.999-6, ExPosition-2.8.23, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1-1, FactoMineR-2.4, FactorCopula-0.8, fail-1.3, fansi-0.5.0, farver-2.1.0, fastcluster-1.2.3, fasterize-1.0.3, fastICA-1.2-3, fastmap-1.1.0, fastmatch-1.1-3, fdrtool-1.2.16, feather-0.3.5, ff-4.0.5, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-13.3, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-6, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.2, fmri-1.9.6, FNN-1.1.3, fontawesome-0.2.2, forcats-0.5.1, foreach-1.5.1, forecast-8.15, foreign-0.8-81, formatR-1.11, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.23.0, future.apply-1.8.1, g-r, g-r, g-r, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-1, gapfill-0.9.6-1, gargle-1.2.0, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geex-1.0.12, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.1, genoPlotR-0.8.11, GenSA-1.1.7, geojsonsf-2.0.1, geometries-0.2.0, geometry-0.4.5, gert-1.4.1, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.2, ggbeeswarm-0.6.0, ggdag-0.2.4, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.10, ggplot2-3.3.5, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.3, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, GJRM-0.2-5.1, glasso-1.11, gld-2.6.2, gllvm-1.3.1, glmmML-1.1.1, glmmTMB-1.1.2.3, glmnet-4.1-2, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.0, gower-0.2.2, GPArotation-2014.11-1, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.2, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-7, gsw-1.0-6, gt-0.3.1, gtable-0.3.0, gtools-3.9.2, gtsummary-1.5.0, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.34.0.3, hal9001-0.4.1, harmony-0.1.0, hash-2.2.6.1, haven-2.4.3, hdf5r-1.3.4, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1, hexbin-1.28.2, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.6-0, hms-1.1.1, Hmsc-3.0-11, htmlTable-2.3.0, htmltools-0.5.2, htmlwidgets-1.5.4, httpcode-0.3.0, httpuv-1.6.3, httr-1.4.2, huge-1.3.5, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ids-1.0.1, ie2misc-0.8.6, igraph-1.2.7, image.binarization-0.1.2, imager-0.42.10, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-12, irace-3.4.1, irlba-2.3.3, ismev-1.42, Iso-0.0-18.1, isoband-0.2.5, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-9, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.7.2, jstable-1.0.7, kde1d-1.0.3, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-20, klaR-0.6-15, knitr-1.36, KODAMA-1.8, kohonen-3.0.10, ks-1.13.2, labdsv-2.0-1, labeling-0.4.2, labelled-2.9.0, laeken-0.5.2, lambda.r-1.2.4, LaplacesDemon-16.1.6, lars-1.2, lassosum-0.4.5, later-1.3.0, lattice-0.20-45, latticeExtra-0.6-29, lava-1.6.10, lavaan-0.6-9, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, ldbounds-1.1-1.1, leafem-0.1.6, leaflet-2.0.4.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.9, lhs-1.1.3, libcoin-1.0-9, lifecycle-1.0.1, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-27.1, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, lobstr-1.1.1, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.6, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lpSolveAPI-5.5.2.0-17.7, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.8.0, lwgeom-0.2-8, m-e, magic-1.5-9, magick-2.7.3, magrittr-2.0.1, MALDIquant-1.20, manipulateWidget-0.11.1, mapproj-1.2.7, maps-3.4.0, maptools-1.1-2, markdown-1.1, MASS-7.3-54, Matching-4.9-11, MatchIt-4.3.0, mathjaxr-1.4-0, matlab-1.0.2, Matrix-1.3-4, matrixcalc-1.0-5, MatrixModels-0.5-0, matrixStats-0.61.0, maxLik-1.5-2, maxlike-0.1-8, maxnet-0.1.4, mboost-2.9-5, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.6-0, mcmcse-1.5-0, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.2-1, metadat-1.0-0, metafor-3.0-2, MetaUtility-2.1.2, mets-1.2.9, mgcv-1.8-38, mgsub-1.7.3, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, mirt-1.35.1, misc3d-0.9-1, miscTools-0.6-26, missForest-1.4, mitml-0.4-3, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, MLmetrics-1.1.1, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14, MonteCarlo-1.0.6, mpath-0.4-2.19, mRMRe-2.1.2, msm-1.6.9, mstate-0.3.2, multcomp-1.4-17, multicool-0.1-12, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.12, mvnfast-0.2.7, mvtnorm-1.1-3, nabor-0.5.0, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, ncdf4-1.17, NCmisc-1.1.6, network-1.17.1, networkDynamic-0.11.0, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-153, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-16, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-9.5, nortest-1.0-4, np-0.60-11, npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.3.2, oce-1.4-0, OceanView-1.0.6, oddsratio-2.0.1, openair-2.8-6, OpenMx-2.19.8, openssl-1.4.5, openxlsx-4.2.4, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2021-10.12, optmatch-0.9-15, optparse-1.7.1, ordinal-2019.12-10, origami-1.0.5, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.7.0, pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallelly-1.28.1, parallelMap-1.5.1, ParamHelpers-1.14, parsedate-1.2.1, party-1.3-9, partykit-1.2-15, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.5-0, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-74, pdp-0.7.0, PearsonDS-1.2.1, pec-2022.03.06, penalized-0.9-51, penfa-0.1.1, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.7.1, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-90, pillar-1.6.4, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.3, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.2, plotly-4.10.0, plotmo-3.6.1, plotrix-3.8-2, pls-2.8-0, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, posterior-1.1.0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyGraphs-2.1.6, prettyunits-1.1.1, pROC-1.18.0, processx-3.5.2, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.9.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-26, pryr-0.1.5, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.9, Publish-2020.12.23, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.3, qgraph-1.9, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.86, questionr-0.7.5, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.11.0, R6-2.5.1, randomForest-4.6-14, randomForestSRC-2.13.0, randtoolbox-1.31.1, rangeModelMetadata-0.1.4, ranger-0.13.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.5-2, rasterVis-0.51.0, ratelimitr-0.4.1, rbibutils-2.2.4, rbison-1.0.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.4.0, RColorBrewer-1.1-2, Rcpp-1.0.7, RcppArmadillo-0.10.7.0.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.10, RcppParallel-5.1.4, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-1.0.0, RCurl-1.98-1.5, rda-1.0.2-2.1, Rdpack-2.1.2, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-2.0.2, readxl-1.3.1, rebird-1.3.0, recipes-0.1.17, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, relsurv-2.2-7, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.1, rentrez-1.2.3, renv-0.15.5, reprex-2.0.1, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.22, rex-1.2.0, rgbif-3.6.0, RGCCA-2.1.2, rgdal-1.5-27, rgeos-0.5-8, rgexf-0.16.2, rgl-0.107.14, Rglpk-0.6-4, RhpcBLASctl-0.21-247.1, ridigbio-0.3.5, RInside-0.2.16, rio-0.5.27, riskRegression-2022.03.09, ritis-1.0.0, RItools-0.1-17, rJava-1.0-5, rjson-0.2.20, RJSONIO-1.3-1.6, rlang-0.4.12, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.11, rmeta-3.0, Rmpfr-0.8-7, Rmpi-0.6-9.2, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5.2, rngWELL-0.10-7, robustbase-0.93-9, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.3, rotl-3.0.11, roxygen2-7.1.2, rpact-3.2.1, rpart-4.1-15, rpf-1.0.11, RPMM-1.25, rprojroot-2.0.2, rrcov-1.6-0, rredlist-0.7.0, rsconnect-0.8.24, Rserve-1.7-3.1, RSNNS-0.4-14, Rsolnp-1.16, RSQLite-2.2.8, Rssa-1.0.4, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.9, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvertnet-0.8.2, rvest-1.0.2, rvinecopulib-0.6.1.1.1, Rvmmin-2018-4.17.1, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, s2-1.0.7, sampling-2.9, sandwich-3.0-1, sass-0.4.0, SBdecomp-1.1, scales-1.1.1, scam-1.2-12, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.8, segmented-1.3-4, selectr-0.4-2, sem-3.1-13, semPLS-1.0-10, semTools-0.5-5, sendmailR-1.2-1, sensemakr-0.1.4, seqinr-4.2-8, servr-0.23, sessioninfo-1.2.0, setRNG-2013.9-1, sf-1.0-3, sfheaders-0.4.0, sfsmisc-1.1-12, shape-1.4.6, shapefiles-0.7, shiny-1.7.1, shinydashboard-0.7.2, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.2, simex-1.8, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.7, smoother-1.1, sn-2.0.0, sna-2.6, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.7-0, spaMM-3.9.13, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-14, spatstat-2.2-0, spatstat.core-2.3-0, spatstat.data-2.1-0, spatstat.geom-2.3-0, spatstat.linnet-2.3-0, spatstat.sparse-2.0-0, spatstat.utils-2.2-0, spData-2.0.1, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.0, spThin-0.2.0, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, stars-0.5-3, startupmsg-0.9.6, StatMatch-1.4.0, statmod-1.4.36, statnet-2019.6, statnet.common-4.5.0, stdReg-3.4.1, stopwords-2.3, stringdist-0.9.8, stringi-1.7.5, stringr-1.4.0, strucchange-1.5-2, styler-1.6.2, subplex-1.6, SuperLearner-2.0-28, SuppDists-1.1-9.5, survey-4.1-1, survival-3.2-13, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.13.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-4.0.2, terra-1.4-11, testit-0.13, testthat-3.1.0, TFisher-0.2.0, TH.data-1.1-0, threejs-0.3.3, tibble-3.1.5, tictoc-1.0.1, tidygraph-1.2.0, tidyr-1.1.4, tidyselect-1.1.1, tidytext-0.3.2, tidyverse-1.3.1, tiff-0.1-8, timeDate-3043.102, timereg-2.0.1, tinytex-0.34, tkrplot-0.0-26, tm-0.7-8, tmap-3.3-2, tmaptools-3.1-1, TMB-1.7.22, tmle-1.5.0.2, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-2, tree-1.0-41, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.4, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3.1, twang-2.5, tweedie-2.3.3, tweenr-1.0.2, tzdb-0.2.0, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-2, unmarked-1.1.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.1.3, utf8-1.2.2, uuid-1.0-2, V8-3.4.2, vcd-1.4-9, vcfR-1.12.0, vctrs-0.3.8, vegan-2.5-7, VennDiagram-1.7.0, VGAM-1.1-5, VIM-6.1.1, VineCopula-2.4.3, vioplot-0.3.7, vipor-0.4.5, viridis-0.6.2, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.1.0, vroom-1.5.5, VSURF-1.1.0, waldo-0.3.1, waveslim-1.8.2, wdm-0.2.2, webshot-0.5.2, WeightSVM-1.7-9, wellknown-0.7.4, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.3.1, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.2, wk-0.5.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.27, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.8, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.2.0, zoo-1.8-9 + +### R/4.1.0-foss-2021a + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.5, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.64, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.4.0, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-2, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.3-15, blob-1.2.1, BMA-3.18.15, bmp-0.3, bnlearn-4.6.1, bold-1.2.0, boot-1.3-28, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.2, bridgedist-0.1.0, bridgesampling-1.1-2, brio-1.1.2, brms-2.15.0, Brobdingnag-1.2-6, broom-0.7.6, broom.helpers-1.3.0, broom.mixed-0.2.6, bslib-0.2.5.1, bst-0.3-23, cachem-1.0.5, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.7.0, car-3.0-10, carData-3.0-4, caret-6.0-88, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-19, classInt-0.4-3, cli-2.5.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-59, cluster-2.1.2, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, collapse-1.6.5, colorspace-2.0-1, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compiler, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.88, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.7, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.2, cubelyr-1.0.1, curl-4.3.1, cvAUC-1.1.0, CVST-0.2-2, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, datasets, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.1, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.15.1, DEoptim-2.2-6, DEoptimR-1.0-9, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.41, deSolve-1.28, devtools-2.4.1, dfidx-0.0-4, DHARMa-0.4.1, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.4, digest-0.6.27, dimRed-0.2.3, diptest-0.76-0, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.6, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.18, dtangle-2.0.9, dtplyr-1.1.0, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-7, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.2, emdbook-1.3.12, emulator-1.2-21, energy-1.7-8, ENMeval-2.0.0, entropy-1.3.0, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1-1, FactoMineR-2.4, fail-1.3, fansi-0.5.0, farver-2.1.0, fastcluster-1.2.3, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-12.3, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-5, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.15, foreign-0.8-81, formatR-1.11, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-1, gapfill-0.9.6-1, gargle-1.1.0, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geex-1.0.12, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geojsonsf-2.0.1, geometries-0.2.0, geometry-0.4.5, gert-1.3.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.3.0, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, googledrive-1.0.1, googlesheets4-0.3.0, gower-0.2.2, gplots-3.1.1, graphics, graphlayouts-0.7.1, grDevices, grf-2.0.0, grid, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.1, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.1.3, hal9001-0.2.7, haven-2.4.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.5-0, hms-1.1.0, htmlTable-2.2.1, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.6.1, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ids-1.0.1, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.8, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.19, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4, ipred-0.9-11, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.7.2, jstable-1.0.2, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-20, klaR-0.6-15, knitr-1.33, KODAMA-1.6, kohonen-3.0.10, ks-1.13.1, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.2.0, lattice-0.20-44, latticeExtra-0.6-29, lava-1.6.9, lavaan-0.6-8, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leafem-0.1.6, leaflet-2.0.4.1, leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.8, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-27, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, lwgeom-0.2-7, magic-1.5-9, magick-2.7.2, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.11.0, maps-3.3.0, maptools-1.1-1, markdown-1.1, MASS-7.3-54, Matching-4.9-9, MatchIt-4.2.0, mathjaxr-1.4-0, Matrix-1.3-4, matrixcalc-1.0-4, MatrixModels-0.5-0, matrixStats-0.59.0, maxLik-1.4-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-5, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-3.0-1, methods, mgcv-1.8-36, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, momentfit-0.2, moments-0.14, mpath-0.4-2.19, mRMRe-2.1.1, msm-1.6.8, multcomp-1.4-17, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.12, mvnfast-0.2.7, mvtnorm-1.1-1, naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-16, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-9.5, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.4-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.4, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-14, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, packrat-0.6.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallel, parallelly-1.25.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.1, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-74, penalized-0.9-51, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.7.0, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-80, pillar-1.6.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.1, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.2, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.5.2, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.3, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.3, qgraph-1.6.9, qqman-0.1.8, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.11.0, ranger-0.12.1, RANN-2.6.1, rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.4-10, rasterVis-0.50.2, ratelimitr-0.4.1, rbibutils-2.1.1, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.5.0.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.1.4, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.3, rda-1.0.2-2.1, Rdpack-2.1.2, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.16, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, rematch-1.0.1, rematch2-2.1.2, remotes-2.4.0, rentrez-1.2.3, reprex-2.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.20, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.106.8, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-1.0-4, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.11, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.8, rmeta-3.0, Rmpi-0.6-9.1, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-8, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.18, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.7, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1, rvest-1.0.0, Rvmmin-2018-4.17.1, RWeka-0.4-43, RWekajars-3.9.3-2, sampling-2.9, sandwich-3.0-1, sass-0.4.0, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-4, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.22, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-8, sfheaders-0.4.0, sfsmisc-1.1-11, shape-1.4.6, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-2.0.0, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.8.0, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-14, spatstat-2.1-0, spatstat.core-2.1-2, spatstat.data-2.1-0, spatstat.geom-2.1-0, spatstat.linnet-2.1-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0, spData-0.3.8, splines, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, stars-0.5-3, startupmsg-0.9.6, StatMatch-1.4.0, statmod-1.4.36, statnet-2019.6, statnet.common-4.4.1, stats, stats4, stdReg-3.4.1, stopwords-2.2, stringdist-0.9.6.3, stringi-1.6.2, stringr-1.4.0, strucchange-1.5-2, styler-1.4.1, subplex-1.6, SuperLearner-2.0-28, SuppDists-1.1-9.5, survey-4.0, survival-3.2-11, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, tableone-0.12.0, tabletools-0.1.0, taxize-0.9.99, tcltk, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.2-10, testit-0.13, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.2, tictoc-1.0.1, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.1, tidytext-0.3.1, tidyverse-1.3.1, tiff-0.1-8, timeDate-3043.102, timereg-2.0.0, tinytex-0.32, tkrplot-0.0-25, tm-0.7-8, tmap-3.3-2, tmaptools-3.1-1, TMB-1.7.20, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, tools, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.3, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.2, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-1, unmarked-1.1.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.2.1, utils, uuid-0.1-4, V8-3.4.2, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.8, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.6, vipor-0.4.5, viridis-0.6.1, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, widgetframe-0.3.1, WikidataQueryServiceR-1.0.0, WikidataR-2.1.5, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.2, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.23, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.6, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.2.0, zoo-1.8-9 + +### R/4.0.5-fosscuda-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.15.0, Brobdingnag-1.2-6, broom-0.7.6, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.6.0, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.4.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.7, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.1, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.4.0, dfidx-0.0-4, DHARMa-0.4.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.4, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-6, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.14, foreign-0.8-81, formatR-1.8, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.3.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.1, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.1, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.8, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-11, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.2, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.9, lavaan-0.6-8, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.1, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.1-1, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.19, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.4-0, OceanView-1.0.5, oddsratio-2.0.1, OpenCL-0.2-1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.6.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.24.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.6.3, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.1, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.5.1, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.3, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.11.0, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50.1, rbibutils-2.1, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.3, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.3.0, rentrez-1.2.3, reprex-2.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.5, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, RViennaCL-1.7.1.8, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-8, sfsmisc-1.1-10, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-2.0.0, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.34, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-2.1-0, spatstat.core-2.0-0, spatstat.data-2.1-0, spatstat.geom-2.0-1, spatstat.linnet-2.1-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.4.1, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-10, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-8, timeDate-3043.102, timereg-1.9.8, tinytex-0.31, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.2, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-1, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.2.1, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.7, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.6, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.22, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.6, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9 + +### R/4.0.5-foss-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.15.0, Brobdingnag-1.2-6, broom-0.7.6, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.6.0, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.2, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.4.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.7, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.1, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.4.0, dfidx-0.0-4, DHARMa-0.4.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.4, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-6, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.14, foreign-0.8-81, formatR-1.8, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.3.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.1, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.1, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.8, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-11, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.2, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.9, lavaan-0.6-8, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.1, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.1-1, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.19, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.4-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.6.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.24.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.3, PermAlgo-1.1, permute-0.9-5, phangorn-2.6.3, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.1, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.5.1, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.3, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.11.0, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50.1, rbibutils-2.1, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.3, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.3.0, rentrez-1.2.3, reprex-2.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.2-0, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.5, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-8, sfsmisc-1.1-10, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-2.0.0, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.34, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-2.1-0, spatstat.core-2.0-0, spatstat.data-2.1-0, spatstat.geom-2.0-1, spatstat.linnet-2.1-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.4.1, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-10, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-8, timeDate-3043.102, timereg-1.9.8, tinytex-0.31, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.2, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-1, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.2.1, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.7, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.6, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.22, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.6, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9 + +### R/4.0.4-fosscuda-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.1, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.5, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.1, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.3.1, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.6, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.3.2, dfidx-0.0-4, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.3, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.13, foreign-0.8-81, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-1, gamlss.data-5.1-4, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.2.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.7, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-10, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.0, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-6, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.18, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.3-0, OceanView-1.0.5, oddsratio-2.0.1, OpenCL-0.2-1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.23.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.2, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.4.5, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.12, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.10.1, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50, rbibutils-2.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.3, reprex-1.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.1-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.3, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, RViennaCL-1.7.1.8, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-7, sfsmisc-1.1-8, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.2, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-1.64-1, spatstat.data-2.0-0, spatstat.utils-2.0-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-7, timeDate-3043.102, timereg-1.9.8, tinytex-0.30, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-0, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.6, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.2.0, xfun-0.21, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9 + +### R/4.0.4-foss-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.15, assertive-0.3-6, assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5-1, awsMethods-1.1-1, b-a, backports-1.2.1, bacr-1.0.1, bartMachine-1.2.6, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.8.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.3.1, betareg-3.1-4, BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.1, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-15, blob-1.2.1, BMA-3.18.14, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-27, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.1, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.5, broom.helpers-1.3.0, bslib-0.2.4, bst-0.3-23, c-o, cachem-1.0.4, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.1, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.12, circular-0.4-93, class-7.3-18, classInt-0.4-3, cli-2.3.1, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-58, cluster-2.1.1, clusterGeneration-1.3.7, clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-1, colorspace-2.0-0, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-1, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.1, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.6, crayon-1.4.1, credentials-1.3.0, crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.14.0, data.tree-1.0.0, dbarts-0.9-19, DBI-1.1.1, dbplyr-2.1.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-10, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.3, desc-1.3.0, DescTools-0.99.40, deSolve-1.28, devtools-2.3.2, dfidx-0.0-4, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.3, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.3-3, distillery-1.2, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-1, downloader-0.4, dplyr-1.0.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.17, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-8, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-6, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1, FactoMineR-2.4, fail-1.3, fansi-0.4.2, farver-2.1.0, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.1.0, fastmatch-1.1-0, fdrtool-1.2.16, feather-0.3.5, ff-4.0.4, ffbase-0.13.3, fftw-1.0-6, fftwtools-0.9-11, fields-11.6, filehash-2.4-2, finalfit-1.0.3, findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-3, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.1, foreach-1.5.1, forecast-8.13, foreign-0.8-81, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.21.0, future.apply-1.7.0, g-r, g-r, g-r, gam-1.20, gamlss-5.3-1, gamlss.data-5.1-4, gamlss.dist-5.3-2, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6-1, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, gert-1.2.0, getopt-1.20.3, GetoptLong-1.0.5, GGally-2.1.1, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.8, ggplot2-3.3.3, ggpubr-0.4.0, ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.1, ggvis-0.4.7, gh-1.2.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1, glasso-1.11, gld-2.6.2, gllvm-1.2.3, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.1-1, GlobalOptions-0.1.2, globals-0.14.0, glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gt-0.3.1, gtable-0.3.0, gtools-3.8.2, gtsummary-1.4.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.9, hexbin-1.28.2, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.5-0, hms-1.0.0, htmlTable-2.1.0, htmltools-0.5.1.1, htmlwidgets-1.5.3, httpcode-0.3.0, httpuv-1.5.5, httr-1.4.2, huge-1.3.4.1, hunspell-3.0.1, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.7, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.17, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-3, ipred-0.9-10, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.4, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jquerylib-0.1.3, jsonlite-1.7.2, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.31, KODAMA-1.5, kohonen-3.0.10, ks-1.12.0, labdsv-2.0-1, labeling-0.4.2, labelled-2.8.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.7, lhs-1.1.1, libcoin-1.0-8, lifecycle-1.0.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-26, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.10, m-e, magic-1.5-9, magick-2.7.0, magrittr-2.0.1, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53.1, Matching-4.9-7, MatchIt-4.1.0, Matrix-1.3-2, matrixcalc-1.0-3, MatrixModels-0.5-0, matrixStats-0.58.0, maxLik-1.4-6, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-4, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.5-0, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-34, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.10, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.4-1, mitools-2.4, mixtools-1.2.0, mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.4-2.18, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-16, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.9, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-152, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-15, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.3-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pamr-1.56.1, pan-1.6, parallelly-1.23.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-7, partykit-1.2-13, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.2, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.5.1, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.3, plotmo-3.6.0, plotrix-3.8-1, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.3.3, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.17.0.1, processx-3.4.5, prodlim-2019.11.13, profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-25, pryr-0.1.4, ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.12, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.9, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.85, questionr-0.7.4, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.10.1, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.3, raster-3.4-5, rasterVis-0.50, rbibutils-2.0, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.6, RcppArmadillo-0.10.2.2.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.8, RcppParallel-5.0.3, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.1.1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.15, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.3, reprex-1.0.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.105.22, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.26, ritis-1.0.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.10, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.7, rmeta-3.0, Rmpi-0.6-9.1, rms-6.1-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-7, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-2.0.2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.3, Rssa-1.0.3, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-1.0.0, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.9, sandwich-3.0-0, sass-0.3.1, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-3, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-5, servr-0.21, sessioninfo-1.1.1, setRNG-2013.9-1, sf-0.9-7, sfsmisc-1.1-8, shape-1.4.5, shapefiles-0.7, shiny-1.6.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.6-0, spaMM-3.7.2, SparseM-1.81, SPAtest-3.1.2, spatial-7.3-13, spatstat-1.64-1, spatstat.data-2.0-0, spatstat.utils-2.0-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.2, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2, tergm-3.7.0, terra-1.1-4, testit-0.12, testthat-3.0.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.1.0, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.3, tidyselect-1.1.0, tidytext-0.3.0, tidyverse-1.3.0, tiff-0.1-7, timeDate-3043.102, timereg-1.9.8, tinytex-0.30, tkrplot-0.0-25, tm-0.7-8, TMB-1.7.19, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.3, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.7-0, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-2.0.1, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.6, vegan-2.5-7, VennDiagram-1.6.20, VGAM-1.1-5, VIM-6.1.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.5, waveslim-1.8.2, webshot-0.5.2, WeightSVM-1.7-5, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.4.1, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.2.0, xfun-0.21, xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-9 + +### R/4.0.3-fosscuda-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.13, assertive-0.3-6, assertive.base-0.0-7, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5, awsMethods-1.1-1, b-a, backports-1.2.0, bacr-1.0.1, bartMachine-1.2.5.1, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.7.2, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, betareg-3.1-3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.5.3, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-12, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-25, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.0, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.2, bst-0.3-22, c-o, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.0, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.11, circular-0.4-93, class-7.3-17, classInt-0.4-3, cli-2.1.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.5, clusterRepro-0.9, clustree-0.4.3, clValid-0.6-9, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.3-1, colorspace-1.4-1, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-0, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-3, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.0, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.4, crayon-1.3.4, crosstalk-1.1.0.1, crul-1.0.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.13.2, data.tree-1.0.0, dbarts-0.9-18, DBI-1.1.0, dbplyr-2.0.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-2, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.1, desc-1.2.0, DescTools-0.99.38, deSolve-1.28, devtools-2.3.2, dfidx-0.0-3, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.2, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.1, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-0, downloader-0.4, dplyr-1.0.2, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.16, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-5, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-12, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-4.0.4, ffbase-0.13.1, fftw-1.0-6, fftwtools-0.9-9, fields-11.6, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.1-1, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.0, foreach-1.5.1, forecast-8.13, foreign-0.8-80, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-8, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.20.1, future.apply-1.6.0, g-r, g-r, g-r, gam-1.20, gamlss-5.2-0, gamlss.data-5.1-4, gamlss.dist-5.1-7, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-1, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-1.0.4, GGally-2.0.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.2, ggnetwork-0.5.8, ggplot2-3.3.2, ggpubr-0.4.0, ggraph-2.0.3, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.6, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.27.1, glasso-1.11, gld-2.6.2, gllvm-1.2.2, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.0-2, GlobalOptions-0.1.2, globals-0.13.1, glue-1.4.2, gmm-1.6-5, gmodels-2.18.1, gmp-0.6-1, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.0, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gtable-0.3.0, gtools-3.8.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.4-1, hms-0.5.3, htmlTable-2.1.0, htmltools-0.5.0, htmlwidgets-1.5.2, httpcode-0.3.0, httpuv-1.5.4, httr-1.4.2, huge-1.3.4.1, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.3, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.16, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.2, ISOcodes-2020.03.16, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jsonlite-1.7.1, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.30, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.4.2, labelled-2.7.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.4, lhs-1.1.1, libcoin-1.0-6, lifecycle-0.2.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-25, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.3.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.9, m-e, magic-1.5-9, magick-2.5.1, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.57.0, maxLik-1.4-4, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-3, mclust-5.4.6, mcmc-0.9-7, MCMCpack-1.4-9, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-33, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.11.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mitools-2.4, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.8, mlogit-1.1-1, mlr-2.18.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.3-26, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-14, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-150, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-14, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.1, OpenCL-0.2-1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pan-1.6, parallelly-1.21.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-5, partykit-1.2-10, pastecs-1.3.21, patchwork-1.0.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.4-8.6, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.4.6, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-11, pkgbuild-1.1.0, pkgconfig-2.0.3, pkgload-1.1.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2.1, plotmo-3.6.0, plotrix-3.7-8, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.2, processx-3.4.4, prodlim-2019.11.13, profileModel-0.6.0, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.1.1, proto-1.0.0, proxy-0.4-24, pryr-0.1.4, ps-1.4.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.9, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.17, quantreg-5.75, questionr-0.7.3, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.3-13, rasterVis-0.49, rbibutils-1.4, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.5, RcppArmadillo-0.10.1.0.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.8, RcppParallel-5.0.2, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.0, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.14, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.54, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.16, ritis-0.9.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.8, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.5, rmeta-3.0, Rmpi-0.6-9, rms-6.0-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-6, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-1.3-2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.1, Rssa-1.0.2, rstan-2.21.2, rstantools-2.1.1, rstatix-0.6.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-0.3.6, RViennaCL-1.7.1.8, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-3.0-0, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.1, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-0, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-4, servr-0.20, sessioninfo-1.1.1, setRNG-2013.9-1, sfsmisc-1.1-7, shape-1.4.5, shapefiles-0.7, shiny-1.5.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.1.2, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-4, spaa-0.2.2, spam-2.5-1, spaMM-3.5.0, SparseM-1.78, SPAtest-3.1.2, spatial-7.3-12, spatstat-1.64-1, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.5, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-6, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.0, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.1, tergm-3.7.0, testit-0.12, testthat-3.0.0, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.0.4, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.2, tidyselect-1.1.0, tidytext-0.2.6, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.8, tinytex-0.27, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.18, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-11, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-7, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-1.6.3, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-4, VIM-6.0.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.2, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.3.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.0.0, xfun-0.19, xgboost-1.4.1.1, xlsx-0.6.4.2, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-8 + +### R/4.0.3-foss-2020b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-16, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1, akima-0.6-2.1, alabama-2015.3-1, AlgDesign-1.2.0, AnalyzeFMRI-1.1-23, animation-2.6, aod-1.3.1, ape-5.4-1, argparse-2.0.3, arm-1.11-2, askpass-1.1, asnipe-1.1.13, assertive-0.3-6, assertive.base-0.0-7, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.5, awsMethods-1.1-1, b-a, backports-1.2.0, bacr-1.0.1, bartMachine-1.2.5.1, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.7.2, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.63, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, betareg-3.1-3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.5.3, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-4.0.4, bit64-4.0.5, bitops-1.0-6, blavaan-0.3-12, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.6.1, bold-1.1.0, boot-1.3-25, bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.1, bridgedist-0.1.0, bridgesampling-1.0-0, brio-1.1.0, brms-2.14.4, Brobdingnag-1.2-6, broom-0.7.2, bst-0.3-22, c-o, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.5.1, car-3.0-10, carData-3.0-4, caret-6.0-86, caTools-1.18.0, CBPS-0.22, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.11, circular-0.4-93, class-7.3-17, classInt-0.4-3, cli-2.1.0, clipr-0.7.1, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.5, clusterRepro-0.9, clustree-0.4.3, clValid-0.6-9, cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.3-1, colorspace-1.4-1, colourpicker-1.1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-2.0-0, CompQuadForm-1.4.3, conditionz-0.1.0, conquer-1.0.2, copCAR-2.0-3, corpcor-1.6.9, corrplot-0.84, covr-3.5.1, CovSel-1.2.1, cowplot-1.1.0, coxed-0.3.3, coxme-2.2-16, cpp11-0.2.4, crayon-1.3.4, crosstalk-1.1.0.1, crul-1.0.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4.1, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.13.2, data.tree-1.0.0, dbarts-0.9-18, DBI-1.1.0, dbplyr-2.0.0, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.2-2, dendextend-1.14.0, DEoptim-2.2-5, DEoptimR-1.0-8, Deriv-4.1.1, desc-1.2.0, DescTools-0.99.38, deSolve-1.28, devtools-2.3.2, dfidx-0.0-3, DHARMa-0.3.3.0, dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0, dichromat-2.0-0, diffobj-0.3.2, digest-0.6.27, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.1, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-1.3.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19, dotCall64-1.0-0, downloader-0.4, dplyr-1.0.2, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.16, dtangle-2.0.9, DTRreg-1.7, dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-4, earth-5.3.0, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2, ellipsis-0.3.1, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, ENMeval-0.3.1, entropy-1.2.1, EnvStats-2.4.0, ergm-3.11.0, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-5, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-12, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-4.0.4, ffbase-0.13.1, fftw-1.0-6, fftwtools-0.9-9, fields-11.6, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.1-1, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.1, fmri-1.9.6, FNN-1.1.3, forcats-0.5.0, foreach-1.5.1, forecast-8.13, foreign-0.8-80, formatR-1.7, Formula-1.2-4, formula.tools-1.7.1, fossil-0.4.0, fpc-2.2-8, fpp-0.5, fracdiff-1.5-1, fs-1.5.0, futile.logger-1.4.3, futile.options-1.0.1, future-1.20.1, future.apply-1.6.0, g-r, g-r, g-r, gam-1.20, gamlss-5.2-0, gamlss.data-5.1-4, gamlss.dist-5.1-7, gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.2, gapfill-0.9.6, gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-1, geiger-2.0.7, GeneNet-1.2.15, generics-0.1.0, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-1.0.4, GGally-2.0.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.2, ggnetwork-0.5.8, ggplot2-3.3.2, ggpubr-0.4.0, ggraph-2.0.3, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.6, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.27.1, glasso-1.11, gld-2.6.2, gllvm-1.2.2, glmmML-1.1.1, glmmTMB-1.0.2.1, glmnet-4.0-2, GlobalOptions-0.1.2, globals-0.13.1, glue-1.4.2, gmm-1.6-5, gmodels-2.18.1, gmp-0.6-1, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.2, gplots-3.1.0, graphlayouts-0.7.1, grf-2.0.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.3.0, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gtable-0.3.0, gtools-3.8.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, GxEScanR-2.0.2, h2o-3.32.0.1, hal9001-0.2.7, haven-2.3.1, hdf5r-1.3.3, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.4-1, hms-0.5.3, htmlTable-2.1.0, htmltools-0.5.0, htmlwidgets-1.5.2, httpcode-0.3.0, httpuv-1.5.4, httr-1.4.2, huge-1.3.4.1, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.6, image.binarization-0.1.1, imager-0.42.3, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.16, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.4.1, irlba-2.3.3, Iso-0.0-18.1, isoband-0.2.2, ISOcodes-2020.03.16, iterators-1.0.13, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.7-2, jpeg-0.1-8.1, jsonlite-1.7.1, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-18, klaR-0.6-15, knitr-1.30, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.4.2, labelled-2.7.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, lassosum-0.4.5, later-1.1.0.1, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.8.1, lavaan-0.6-7, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.4, lhs-1.1.1, libcoin-1.0-6, lifecycle-0.2.0, limSolve-1.5.6, linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-25, lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.24, logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.3.1, lpSolve-5.6.15, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10, lubridate-1.7.9, m-e, magic-1.5-9, magick-2.5.1, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-1.0-2, markdown-1.1, MASS-7.3-53, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.57.0, maxLik-1.4-4, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-3, mclust-5.4.6, mcmc-0.9-7, MCMCpack-1.4-9, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, metafor-2.4-0, mgcv-1.8-33, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.11.0, miceadds-3.11-6, MIIVsem-0.5.5, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.9-0, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mitools-2.4, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.8, mlogit-1.1-1, mlr-2.18.0, mltools-0.3.5, mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23, moments-0.14, mpath-0.3-26, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-14, multicool-0.1-11, multipol-1.0-7, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5.1, mvtnorm-1.1-1, naniar-0.6.0, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.1, networkDynamic-0.10.1, neuralnet-1.44.2, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-150, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-14, nnls-1.4, nonnest2-0.5-5, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.5-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.1, openssl-1.4.3, openxlsx-4.2.3, operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16, optimx-2020-4.2, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pan-1.6, parallelly-1.21.0, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-5, partykit-1.2-10, pastecs-1.3.21, patchwork-1.0.1, pbapply-1.4-3, pbivnorm-0.6.0, pbkrtest-0.4-8.6, PCAmatchR-0.3.0, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, phytools-0.7-70, pillar-1.4.6, pim-2.0.2, pinfsc50-1.2.0, pixmap-0.4-11, pkgbuild-1.1.0, pkgconfig-2.0.3, pkgload-1.1.0, pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2.1, plotmo-3.6.0, plotrix-3.7-8, pls-2.7-3, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0, polycor-0.7-10, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.2, processx-3.4.4, prodlim-2019.11.13, profileModel-0.6.0, proftools-0.99-3, progress-1.2.2, progressr-0.8.0, projpred-2.0.2, promises-1.1.1, proto-1.0.0, proxy-0.4-24, pryr-0.1.4, ps-1.4.0, pscl-1.5.5, pspline-1.0-18, psych-2.0.9, pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.17, quantreg-5.75, questionr-0.7.3, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0, R.utils-2.10.1, R6-2.5.0, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.3-13, rasterVis-0.49, rbibutils-1.4, Rborist-0.2-3, RCAL-2.0, Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.5, RcppArmadillo-0.10.1.0.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.8, RcppParallel-5.0.2, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-2.0, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.4.0, readxl-1.3.1, recipes-0.1.14, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.6.2, rematch-1.0.1, rematch2-2.1.2, remotes-2.2.0, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.18, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.54, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.16, ritis-0.9.0, RItools-0.1-17, rJava-0.9-13, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.8, rle-0.9.2, rlecuyer-0.3-5, rmarkdown-2.5, rmeta-3.0, Rmpi-0.6-9, rms-6.0-1, RMTstat-0.3, rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5, robustbase-0.93-6, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.11, roxygen2-7.1.1, rpart-4.1-15, RPMM-1.25, rprojroot-1.3-2, rrcov-1.5-5, rredlist-0.7.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, Rsolnp-1.16, RSQLite-2.2.1, Rssa-1.0.2, rstan-2.21.2, rstantools-2.1.1, rstatix-0.6.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.2, rvest-0.3.6, Rvmmin-2018-4.17, RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-3.0-0, SBdecomp-1.1, scales-1.1.1, scatterplot3d-0.3-41, sctransform-0.3.1, SDMTools-1.1-221.2, seewave-2.1.6, segmented-1.3-0, selectr-0.4-2, sem-3.1-11, semPLS-1.0-10, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-4.2-4, servr-0.20, sessioninfo-1.1.1, setRNG-2013.9-1, sfsmisc-1.1-7, shape-1.4.5, shapefiles-0.7, shiny-1.5.0, shinydashboard-0.7.1, shinyjs-2.0.0, shinystan-2.5.0, shinythemes-1.1.2, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.6-2, sna-2.6, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-4, spaa-0.2.2, spam-2.5-1, spaMM-3.5.0, SparseM-1.78, SPAtest-3.1.2, spatial-7.3-12, spatstat-1.64-1, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.8, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.5, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-6, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.35, statnet-2019.6, statnet.common-4.4.1, stdReg-3.4.0, stopwords-2.0, stringdist-0.9.6.3, stringi-1.5.3, stringr-1.4.0, strucchange-1.5-2, styler-1.3.2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.2-7, survivalROC-1.0.3, svd-0.5, symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.12.0, taxize-0.9.99, tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.1, tergm-3.7.0, testit-0.12, testthat-3.0.0, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.0.4, tictoc-1.0, tidygraph-1.2.0, tidyr-1.1.2, tidyselect-1.1.0, tidytext-0.2.6, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.8, tinytex-0.27, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.18, tmle-1.5.0-1, tmvnsim-1.0-2, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-11, TraMineR-2.2-1, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1, truncnorm-1.0-8, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3, twang-2.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-7, unmarked-1.0.1, UpSetR-1.4.0, urca-1.3-0, urltools-1.7.3, uroot-2.1-2, usethis-1.6.3, utf8-1.1.4, uuid-0.1-4, V8-3.4.0, vcd-1.4-8, vcfR-1.12.0, vctrs-0.3.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-4, VIM-6.0.0, vioplot-0.3.5, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visdat-0.5.3, visNetwork-2.0.9, VSURF-1.1.0, waldo-0.2.2, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.4.0, withr-2.3.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.0.0, xfun-0.19, xgboost-1.4.1.1, xlsx-0.6.4.2, xlsxjars-0.6.1, XML-3.99-0.5, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.1.1, zoo-1.8-8 + +### R/4.0.0-foss-2020a + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-15, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-0, akima-0.6-2, AlgDesign-1.2.0, animation-2.6, aod-1.3.1, ape-5.3, argparse-2.0.1, arm-1.11-1, askpass-1.1, asnipe-1.1.12, assertive-0.3-6, assertive.base-0.0-7, assertive.code-0.0-3, assertive.data-0.0-3, assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3, assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2, assertive.numbers-0.0-2, assertive.properties-0.0-4, assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3, assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, aws-2.4-3, awsMethods-1.1-1, b-a, backports-1.1.6, bacr-1.0.1, bartMachine-1.2.4.2, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, bayesplot-1.7.1, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.3.0, BDgraph-2.62, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, betareg-3.1-3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.2, BIGL-1.4.3, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, biomod2-3.4.6, bit-1.1-15.2, bit64-0.9-7, bitops-1.0-6, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.5, bold-0.9.0, boot-1.3-25, bootstrap-2019.6, Boruta-6.0.0, brew-1.0-6, brglm-0.6.2, bridgedist-0.1.0, bridgesampling-1.0-0, brms-2.12.0, Brobdingnag-1.2-6, broom-0.5.6, bst-0.3-17, c-o, Cairo-1.5-12, calibrate-1.7.5, callr-3.4.3, car-3.0-7, carData-3.0-3, caret-6.0-86, caTools-1.18.0, celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-55, circlize-0.4.8, circular-0.4-93, class-7.3-17, classInt-0.4-3, cli-2.0.2, clipr-0.7.0, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.4, clusterRepro-0.9, clustree-0.4.2, clValid-0.6-6, cobs-1.3-4, coda-0.19-3, codetools-0.2-16, coin-1.3-1, colorspace-1.4-1, colourpicker-1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-1.40-5, copCAR-2.0-3, corpcor-1.6.9, corrplot-0.84, covr-3.5.0, CovSel-1.2.1, cowplot-1.0.0, coxed-0.3.3, coxme-2.2-16, crayon-1.3.4, crosstalk-1.1.0.1, crul-0.9.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.12.8, data.tree-1.0.0, dbarts-0.9-18, DBI-1.1.0, dbplyr-1.4.3, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.1-25, dendextend-1.13.4, DEoptimR-1.0-8, Deriv-4.0, desc-1.2.0, DescTools-0.99.38, deSolve-1.28, devtools-2.3.0, DHARMa-0.3.0, dHSIC-2.1, diagram-1.6.4, DiagrammeR-1.0.5, dichromat-2.0-0, digest-0.6.25, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.0-7, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, doMC-1.3.6, doParallel-1.0.15, doRNG-1.8.2, doSNOW-1.0.18, dotCall64-1.0-0, downloader-0.4, dplyr-0.8.5, dr-3.0.10, drgee-1.1.10, DRR-0.0.4, drugCombo-1.1.1, DT-0.13, dtangle-2.0.9, DTRreg-1.5, dtw-1.21-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1, e1071-1.7-3, earth-5.1.2, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.1, ellipsis-0.3.0, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, ENMeval-0.3.0, entropy-1.2.1, EnvStats-2.3.1, ergm-3.10.4, ergm.count-3.4.0, evaluate-0.14, Exact-2.1, expm-0.999-4, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-11, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fasterize-1.0.3, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-2.2-14.2, ffbase-0.12.8, fftw-1.0-6, fftwtools-0.9-8, fields-10.3, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.0-14, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-15, fma-2.4, FME-1.3.6.1, FNN-1.1.3, forcats-0.5.0, foreach-1.5.0, forecast-8.12, foreign-0.8-79, formatR-1.7, Formula-1.2-3, fossil-0.4.0, fpc-2.2-5, fpp-0.5, fracdiff-1.5-1, fs-1.4.1, futile.logger-1.4.3, futile.options-1.0.1, future-1.17.0, future.apply-1.4.0, g-r, g-r, g-r, gam-1.16.1, gamlss-5.1-6, gamlss.data-5.1-4, gamlss.dist-5.1-6, gamlss.tr-5.1-0, gap-1.2.2, gapfill-0.9.6, gaussquad-1.0-2, gbm-2.1.5, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-1, gee-4.13-20, geepack-1.3-1, geiger-2.0.6.4, GeneNet-1.2.14, generics-0.0.2, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-0.1.8, GGally-1.5.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.1, ggnetwork-0.5.8, ggplot2-3.3.0, ggpubr-0.3.0, ggraph-2.0.2, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.5, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.26.1, glasso-1.11, gld-2.6.2, gllvm-1.2.1, glmmML-1.1.0, glmmTMB-1.0.1, glmnet-3.0-2, GlobalOptions-0.1.1, globals-0.12.5, glue-1.4.0, gmm-1.6-4, gmodels-2.18.1, gmp-0.5-13.6, gnumeric-0.7-8, goftest-1.2-2, gomms-1.0, gower-0.2.1, gplots-3.0.3, graphlayouts-0.7.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.2.2, GSA-1.03.1, gsalib-2.1, gsl-2.1-6, gsw-1.0-5, gtable-0.3.0, gtools-3.8.2, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6, h2o-3.30.0.1, hal9001-0.2.7, haven-2.2.0, hdf5r-1.3.2, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.4-0, hms-0.5.3, htmlTable-1.13.3, htmltools-0.4.0, htmlwidgets-1.5.1, httpcode-0.3.0, httpuv-1.5.2, httr-1.4.1, huge-1.3.4.1, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ie2misc-0.8.6, igraph-1.2.5, imager-0.42.1, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.15, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.4.1, irlba-2.3.3, Iso-0.0-18, isoband-0.2.1, ISOcodes-2020.03.16, iterators-1.0.12, itertools-0.1-3, JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.6-10, jpeg-0.1-8.1, jsonlite-1.6.1, jstable-1.0.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-17, klaR-0.6-15, knitr-1.28, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.3, labelled-2.3.0, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, later-1.0.0, lattice-0.20-41, latticeExtra-0.6-29, lava-1.6.7, lavaan-0.6-5, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.3, lhs-1.0.2, libcoin-1.0-5, lifecycle-0.2.0, limSolve-1.5.6, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-23, lmerTest-3.1-2, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-37, locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.5, logistf-1.23, logspline-2.1.15, longitudinal-1.1.12, longmemo-1.1-2, loo-2.2.0, lpSolve-5.6.15, lqa-1.0-3, lsei-1.2-0, lubridate-1.7.8, m-e, magic-1.5-9, magick-2.3, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-0.9-9, markdown-1.1, MASS-7.3-51.6, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.56.0, maxLik-1.3-8, maxlike-0.1-8, maxnet-0.1.2, mboost-2.9-2, mclust-5.4.6, mcmc-0.9-7, MCMCpack-1.4-6, mcmcse-1.4-1, mda-0.5-2, medflex-0.6-6, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, mgcv-1.8-31, mgsub-1.7.2, mhsmm-0.4.16, mi-1.0, mice-3.8.0, MIIVsem-0.5.4, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.8-4, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mitools-2.4, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.7, mlogit-1.0-3.1, mlr-2.17.1, mltools-0.3.5, mnormt-1.5-6, ModelMetrics-1.2.2.2, modelr-0.1.6, modeltools-0.2-23, moments-0.14, mpath-0.3-25, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-13, multicool-0.1-11, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5, mvtnorm-1.1-0, natserv-0.4.0, ncbit-2013.03.29, NCmisc-1.1.6, network-1.16.0, networkDynamic-0.10.1, neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2, nlme-3.1-147, nloptr-1.2.2.1, NLP-0.2-0, nlsem-0.8, nnet-7.3-14, nnls-1.4, nor1mix-1.3-0, nortest-1.0-4, np-0.60-10, npsurv-0.4-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.0, openssl-1.4.1, openxlsx-4.1.4, optmatch-0.9-13, optparse-1.6.6, ordinal-2019.12-10, origami-1.0.3, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.5.0, pacman-0.5.1, pan-1.6, parallelMap-1.5.0, ParamHelpers-1.14, parsedate-1.2.0, party-1.3-4, partykit-1.2-7, pastecs-1.3.21, patchwork-1.0.0, pbapply-1.4-2, pbivnorm-0.6.0, pbkrtest-0.4-8.6, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, PermAlgo-1.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, pillar-1.4.3, pim-2.0.2, pinfsc50-1.1.0, pixmap-0.4-11, pkgbuild-1.0.7, pkgconfig-2.0.3, pkgload-1.0.2, pkgmaker-0.31.1, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2.1, plotmo-3.5.7, plotrix-3.7-8, pls-2.7-2, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.17, polyclip-1.10-0, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.2, processx-3.4.2, prodlim-2019.11.13, profileModel-0.6.0, proftools-0.99-3, progress-1.2.2, promises-1.1.0, proto-1.0.0, proxy-0.4-24, pryr-0.1.4, ps-1.3.2, pscl-1.5.5, pspline-1.0-18, psych-1.9.12.31, pulsar-0.3.6, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.2, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.17, quantreg-5.55, questionr-0.7.0, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.0, R.oo-1.23.0, R.rsp-0.43.2, R.utils-2.9.2, R6-2.4.1, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.1-5, rasterVis-0.47, Rborist-0.2-3, RCAL-2.0, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.4.6, RcppArmadillo-0.9.870.2.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.7, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.2, rda-1.0.2-2.1, Rdpack-0.11-1, rdrop2-0.8.2.1, readbitmap-0.1.5, reader-1.0.6, readODS-1.7.0, readr-1.3.1, readxl-1.3.1, recipes-0.1.10, RefFreeEWAS-2.2, registry-0.5-1, rematch-1.0.1, rematch2-2.1.1, remotes-2.1.1, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.15, rex-1.2.0, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.54, Rglpk-0.6-4, RInside-0.2.16, rio-0.5.16, ritis-0.9.0, RItools-0.1-17, rJava-0.9-12, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.5, rlecuyer-0.3-5, rmarkdown-2.1, rmeta-3.0, Rmpi-0.6-9, rms-5.1-4, RMTstat-0.3, rncl-0.8.4, RNeXML-2.4.3, rngtools-1.5, robustbase-0.93-6, ROCR-1.0-7, ROI-0.3-3, ROI.plugin.glpk-0.3-0, Rook-1.1-1, rootSolve-1.8.2.1, rotl-3.0.10, roxygen2-7.1.0, rpart-4.1-15, RPMM-1.25, rprojroot-1.3-2, rrcov-1.5-2, rredlist-0.6.0, rsconnect-0.8.16, Rserve-1.7-3.1, RSNNS-0.4-12, RSQLite-2.2.0, Rssa-1.0.2, rstan-2.19.3, rstantools-2.0.0, rstatix-0.5.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.0.1, rvest-0.3.5, RWeka-0.4-42, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-2.5-1, scales-1.1.0, scatterplot3d-0.3-41, sctransform-0.2.1, SDMTools-1.1-221.2, seewave-2.1.5, segmented-1.1-0, selectr-0.4-2, sem-3.1-9, sendmailR-1.2-1, sensemakr-0.1.3, seqinr-3.6-1, servr-0.16, sessioninfo-1.1.1, sfsmisc-1.1-6, shape-1.4.4, shapefiles-0.7, shiny-1.4.0.2, shinydashboard-0.7.1, shinyjs-1.1, shinystan-2.5.0, shinythemes-1.1.2, signal-0.7-6, SignifReg-3.0, SimSeq-1.4.0, SKAT-2.0.0, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.6-1, sna-2.5, snow-0.4-3, SnowballC-0.7.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-1, spaa-0.2.2, spam-2.5-1, spaMM-3.2.0, SparseM-1.78, SPAtest-3.0.2, spatial-7.3-12, spatstat-1.63-3, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.5, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.2, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-1, stargazer-5.2.2, startupmsg-0.9.6, statmod-1.4.34, statnet-2019.6, statnet.common-4.3.0, stdReg-3.4.0, stopwords-2.0, stringi-1.4.6, stringr-1.4.0, strucchange-1.5-2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survey-4.0, survival-3.1-12, survivalROC-1.0.3, svd-0.5, sys-3.3, t-c, t-o, tableone-0.12.0, taxize-0.9.95, tcltk2-1.2-11, tclust-1.4-1, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.1, tergm-3.6.1, testit-0.11, testthat-2.3.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-3.0.1, tictoc-1.0, tidygraph-1.1.2, tidyr-1.0.2, tidyselect-1.0.0, tidytext-0.2.4, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.4, tinytex-0.22, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.16, tmle-1.4.0.1, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-11, TraMineR-2.2-0, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.23-6, tuneR-1.3.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-6, unmarked-1.0.1, urca-1.3-0, urltools-1.7.3, uroot-2.1-0, usethis-1.6.1, utf8-1.1.4, uuid-0.1-4, vcd-1.4-7, vcfR-1.10.0, vctrs-0.2.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-3, VIM-5.1.1, vioplot-0.3.4, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.9, VSURF-1.1.0, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.3.0, withr-2.2.0, wordcloud-2.6, worrms-0.4.0, WriteXLS-5.0.0, xfun-0.13, xlsx-0.6.3, xlsxjars-0.6.1, XML-3.99-0.3, xml2-1.3.2, xopen-1.0.0, xtable-1.8-4, xts-0.12-0, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.0.4, zoo-1.8-7 + +### R/3.6.3-foss-2020a + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-15, ADGofTest-0.3, aggregation-1.0.1, akima-0.6-2, AlgDesign-1.2.0, animation-2.6, aod-1.3.1, ape-5.3, argparse-2.0.1, arm-1.10-1, askpass-1.1, asnipe-1.1.12, assertthat-0.2.1, AUC-0.3.0, audio-0.1-7, b-a, backports-1.1.5, bacr-1.0.1, bartMachine-1.2.4.2, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.23.1, BCEE-1.2, BDgraph-2.62, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.2.3, BH-1.72.0-3, BiasedUrn-1.07, bibtex-0.4.2.2, bigmemory-4.5.36, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-1, biom-0.3.12, bit-1.1-15.2, bit64-0.9-7, bitops-1.0-6, blob-1.2.1, BMA-3.18.12, bmp-0.3, bnlearn-4.5, bold-0.9.0, boot-1.3-24, bootstrap-2019.6, Boruta-6.0.0, brew-1.0-6, brglm-0.6.2, bridgedist-0.1.0, bridgesampling-1.0-0, Brobdingnag-1.2-6, broom-0.5.5, bst-0.3-17, c-o, Cairo-1.5-11, calibrate-1.7.5, callr-3.4.2, car-3.0-7, carData-3.0-3, caret-6.0-85, caTools-1.18.0, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-55, circlize-0.4.8, circular-0.4-93, class-7.3-15, classInt-0.4-2, cli-2.0.2, clipr-0.7.0, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.4, clusterRepro-0.9, clustree-0.4.2, clValid-0.6-6, cobs-1.3-4, coda-0.19-3, codetools-0.2-16, coin-1.3-1, colorspace-1.4-1, colourpicker-1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-1.40-4, corpcor-1.6.9, corrplot-0.84, covr-3.5.0, CovSel-1.2.1, cowplot-1.0.0, crayon-1.3.4, crosstalk-1.1.0.1, crul-0.9.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.12.8, DBI-1.1.0, dbplyr-1.4.2, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-0.1-25, dendextend-1.13.4, DEoptimR-1.0-8, Deriv-4.0, desc-1.2.0, deSolve-1.28, devtools-2.2.2, DHARMa-0.2.7, dHSIC-2.1, diagram-1.6.4, DiagrammeR-1.0.5, dichromat-2.0-0, digest-0.6.25, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.0-6, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, doMC-1.3.6, doParallel-1.0.15, doRNG-1.8.2, doSNOW-1.0.18, dotCall64-1.0-0, downloader-0.4, dplyr-0.8.5, dr-3.0.10, DRR-0.0.4, DT-0.12, dtangle-2.0.9, DTRreg-1.5, dtw-1.21-3, dummies-1.5.6, dynamicTreeCut-1.63-1, e1071-1.7-3, EasyABC-1.5, ellipse-0.4.1, ellipsis-0.3.0, emdbook-1.3.12, emulator-1.2-20, energy-1.7-7, entropy-1.2.1, ergm-3.10.4, ergm.count-3.4.0, evaluate-0.14, expm-0.999-4, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-11, FactoMineR-2.3, fail-1.3, fansi-0.4.1, farver-2.0.3, fastcluster-1.1.25, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-2.2-14.2, ffbase-0.12.8, fftw-1.0-6, fftwtools-0.9-8, fields-10.3, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.0-14, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-15, fma-2.4, FME-1.3.6.1, FNN-1.1.3, forcats-0.5.0, foreach-1.4.8, forecast-8.11, foreign-0.8-76, formatR-1.7, Formula-1.2-3, fossil-0.3.7, fpc-2.2-5, fpp-0.5, fracdiff-1.5-1, fs-1.3.2, futile.logger-1.4.3, futile.options-1.0.1, future-1.16.0, future.apply-1.4.0, g-r, g-r, g-r, gam-1.16.1, gamlss-5.1-6, gamlss.data-5.1-4, gamlss.dist-5.1-6, gamlss.tr-5.1-0, gap-1.2.2, gapfill-0.9.6, gbm-2.1.5, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.3-1, gee-4.13-20, geepack-1.3-1, geiger-2.0.6.4, GeneNet-1.2.14, generics-0.0.2, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-0.1.8, GGally-1.4.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.1, ggnetwork-0.5.8, ggplot2-3.3.0, ggpubr-0.3.0, ggraph-2.0.2, ggrepel-0.8.2, ggridges-0.5.2, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.5, gh-1.1.0, GillespieSSA-0.6.1, git2r-0.26.1, glasso-1.11, gllvm-1.2.1, glmmML-1.1.0, glmmTMB-1.0.1, glmnet-3.0-2, GlobalOptions-0.1.1, globals-0.12.5, glue-1.3.2, gmm-1.6-4, gmodels-2.18.1, gmp-0.5-13.6, goftest-1.2-2, gomms-1.0, gower-0.2.1, gplots-3.0.3, graphlayouts-0.6.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.2.2, GSA-1.03.1, gsalib-2.1, gsw-1.0-5, gtable-0.3.0, gtools-3.8.1, GUTS-1.1.1, h2o-3.28.0.4, haven-2.2.0, hdf5r-1.3.1, hdm-0.3.1, heatmap3-1.1.7, hexbin-1.28.1, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.3-1, hms-0.5.3, htmlTable-1.13.3, htmltools-0.4.0, htmlwidgets-1.5.1, httpcode-0.2.0, httpuv-1.5.2, httr-1.4.1, huge-1.3.4, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, igraph-1.2.5, imager-0.42.1, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.15, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.3, irlba-2.3.3, Iso-0.0-18, isoband-0.2.0, ISOcodes-2020.03.16, iterators-1.0.12, itertools-0.1-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.6-10, jpeg-0.1-8.1, jsonlite-1.6.1, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-16, klaR-0.6-15, knitr-1.28, KODAMA-1.5, kohonen-3.0.10, ks-1.11.7, labdsv-2.0-1, labeling-0.3, labelled-2.2.2, laeken-0.5.1, lambda.r-1.2.4, LaplacesDemon-16.1.4, lars-1.2, later-1.0.0, lattice-0.20-40, latticeExtra-0.6-29, lava-1.6.7, lavaan-0.6-5, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.1, LearnBayes-2.15.1, leiden-0.3.3, lhs-1.0.1, libcoin-1.0-5, lifecycle-0.2.0, limSolve-1.5.6, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-21, lmerTest-3.1-1, Lmoments-1.3-1, lmtest-0.9-37, locfdr-1.1-8, locfit-1.5-9.1, logcondens-2.1.5, logistf-1.23, logspline-2.1.15, longitudinal-1.1.12, longmemo-1.1-2, loo-2.2.0, lpSolve-5.6.15, lqa-1.0-3, lsei-1.2-0, lubridate-1.7.4, m-e, magic-1.5-9, magick-2.3, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.1, maps-3.3.0, maptools-0.9-9, markdown-1.1, MASS-7.3-51.5, Matching-4.9-7, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.56.0, maxLik-1.3-8, mboost-2.9-2, mclust-5.4.5, mcmc-0.9-6.1, MCMCpack-1.4-6, medflex-0.6-6, mediation-4.5.0, memoise-1.1.0, memuse-4.1-0, mgcv-1.8-31, mi-1.0, mice-3.8.0, MIIVsem-0.5.4, mime-0.9, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.8-4, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mixtools-1.2.0, mlbench-2.1-1, mlegp-3.1.7, mlogit-1.0-3.1, mlr-2.17.0, mltools-0.3.5, mnormt-1.5-6, ModelMetrics-1.2.2.2, modelr-0.1.6, modeltools-0.2-23, moments-0.14, mpath-0.3-23, mRMRe-2.1.0, msm-1.6.8, multcomp-1.4-12, multicool-0.1-11, munsell-0.5.0, mvabund-4.1.3, mvnfast-0.2.5, mvtnorm-1.1-0, natserv-0.3.0, ncbit-2013.03.29, network-1.16.0, networkDynamic-0.10.1, neuRosim-0.2-12, nleqslv-3.3.2, nlme-3.1-145, nloptr-1.2.2.1, NLP-0.2-0, nnet-7.3-13, nnls-1.4, nor1mix-1.3-0, np-0.60-10, npsurv-0.4-0, numDeriv-2016.8-1.1, oce-1.2-0, OceanView-1.0.5, oddsratio-2.0.0, openssl-1.4.1, openxlsx-4.1.4, optmatch-0.9-13, optparse-1.6.4, ordinal-2019.12-10, p-a, packrat-0.5.0, pan-1.6, parallelMap-1.4, ParamHelpers-1.13, parsedate-1.2.0, party-1.3-4, partykit-1.2-7, pastecs-1.3.21, patchwork-1.0.0, pbapply-1.4-2, pbivnorm-0.6.0, pbkrtest-0.4-8.6, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.10, pillar-1.4.3, pim-2.0.2, pinfsc50-1.1.0, pixmap-0.4-11, pkgbuild-1.0.6, pkgconfig-2.0.3, pkgload-1.0.2, pkgmaker-0.31.1, plogr-0.2.0, plot3D-1.3, plot3Drgl-1.0.1, plotly-4.9.2, plotrix-3.7-7, pls-2.7-2, plyr-1.8.6, png-0.1-7, PoissonSeq-1.1.2, polspline-1.1.17, polyclip-1.10-0, polynom-1.4-0, prabclus-2.3-2, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.1.1, pROC-1.16.1, processx-3.4.2, prodlim-2019.11.13, profileModel-0.6.0, progress-1.2.2, promises-1.1.0, proto-1.0.0, proxy-0.4-23, pryr-0.1.4, ps-1.3.2, pscl-1.5.5, pspline-1.0-18, psych-1.9.12.31, pulsar-0.3.6, purrr-0.3.3, pvclust-2.2-0, qgraph-1.6.5, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4-16, quantreg-5.54, questionr-0.7.0, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.8.0, R.oo-1.23.0, R.rsp-0.43.2, R.utils-2.9.2, R6-2.4.1, randomForest-4.6-14, randomForestSRC-2.9.3, ranger-0.12.1, RANN-2.6.1, rappdirs-0.3.1, raster-3.0-12, rasterVis-0.47, Rborist-0.2-3, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.4, RcppArmadillo-0.9.850.1.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.7, RcppProgress-0.4.2, RcppRoll-0.3.0, RCurl-1.98-1.1, rda-1.0.2-2.1, Rdpack-0.11-1, readbitmap-0.1.5, readr-1.3.1, readxl-1.3.1, recipes-0.1.10, registry-0.5-1, rematch-1.0.1, rematch2-2.1.0, remotes-2.1.1, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.3, reticulate-1.14, rex-1.1.2, RGCCA-2.1.2, rgexf-0.16.0, rgl-0.100.50, RInside-0.2.16, rio-0.5.16, ritis-0.8.0, RItools-0.1-17, rJava-0.9-11, rjson-0.2.20, RJSONIO-1.3-1.4, rlang-0.4.5, rlecuyer-0.3-5, rmarkdown-2.1, rmeta-3.0, Rmpi-0.6-9, rms-5.1-4, RMTstat-0.3, rncl-0.8.4, RNeXML-2.4.3, rngtools-1.5, robustbase-0.93-5, ROCR-1.0-7, Rook-1.1-1, rootSolve-1.8.2, rotl-3.0.10, roxygen2-7.1.0, rpart-4.1-15, rprojroot-1.3-2, rrcov-1.5-2, rredlist-0.6.0, Rserve-1.7-3.1, RSNNS-0.4-12, RSQLite-2.2.0, Rssa-1.0.2, rstan-2.19.3, rstatix-0.5.0, rstudioapi-0.11, Rtsne-0.15, Rttf2pt1-1.3.8, RUnit-0.4.32, rversions-2.0.1, rvest-0.3.5, RWeka-0.4-42, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-2.5-1, scales-1.1.0, scatterplot3d-0.3-41, sctransform-0.2.1, SDMTools-1.1-221.2, seewave-2.1.5, segmented-1.1-0, selectr-0.4-2, sem-3.1-9, sendmailR-1.2-1, seqinr-3.6-1, servr-0.16, sessioninfo-1.1.1, sfsmisc-1.1-5, shape-1.4.4, shapefiles-0.7, shiny-1.4.0.2, shinydashboard-0.7.1, shinyjs-1.1, shinythemes-1.1.2, signal-0.7-6, SignifReg-2.1, SimSeq-1.4.0, SKAT-2.0.0, slam-0.1-47, sm-2.2-5.6, smoother-1.1, sn-1.5-5, sna-2.5, snow-0.4-3, SnowballC-0.6.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.4-1, spam-2.5-1, spaMM-3.1.27, SparseM-1.78, SPAtest-3.0.2, spatial-7.3-11, spatstat-1.63-3, spatstat.data-1.4-3, spatstat.utils-1.17-0, spData-0.3.3, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2020.2, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-1, startupmsg-0.9.6, statmod-1.4.34, statnet-2019.6, statnet.common-4.3.0, stopwords-1.0, stringi-1.4.6, stringr-1.4.0, strucchange-1.5-2, subplex-1.6, SuperLearner-2.0-26, SuppDists-1.1-9.5, survival-3.1-11, survivalROC-1.0.3, svd-0.5, sys-3.3, t-c, t-o, taxize-0.9.92, tclust-1.4-1, TeachingDemos-2.10, tensor-1.5, tensorA-0.36.1, tergm-3.6.1, testthat-2.3.2, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.3, tibble-2.1.3, tictoc-1.0, tidygraph-1.1.2, tidyr-1.0.2, tidyselect-1.0.0, tidytext-0.2.3, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.4, tinytex-0.20, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.16, tmle-1.4.0.1, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-9, TraMineR-2.0-15, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9, trust-0.1-8, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.1, tsne-0.1-3, TTR-0.23-6, tuneR-1.3.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-6, urca-1.3-0, urltools-1.7.3, uroot-2.1-0, usethis-1.5.1, utf8-1.1.4, uuid-0.1-4, vcd-1.4-6, vcfR-1.10.0, vctrs-0.2.4, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-2, VIM-5.1.1, vioplot-0.3.4, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.9, VSURF-1.1.0, waveslim-1.8.2, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.3.0, withr-2.1.2, worrms-0.4.0, WriteXLS-5.0.0, xfun-0.12, xlsx-0.6.3, xlsxjars-0.6.1, XML-3.99-0.3, xml2-1.2.5, xopen-1.0.0, xtable-1.8-4, xts-0.12-0, yaImpute-1.0-32, yaml-2.2.1, zeallot-0.1.0, zip-2.0.4, zoo-1.8-7 + +### R/3.6.2-foss-2019b + +This is a list of extensions included in the module: + +abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-13, ADGofTest-0.3, aggregation-1.0.1, akima-0.6-2, AlgDesign-1.2.0, animation-2.6, aod-1.3.1, ape-5.3, argparse-2.0.1, arm-1.10-1, askpass-1.1, asnipe-1.1.12, assertthat-0.2.1, AUC-0.3.0, audio-0.1-6, b-a, backports-1.1.5, bacr-1.0.1, bartMachine-1.2.4.2, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.20, BCEE-1.2, BDgraph-2.62, bdsmatrix-1.3-3, beanplot-1.2, beeswarm-0.2.3, BH-1.69.0-1, BiasedUrn-1.07, bibtex-0.4.2, bigmemory-4.5.33, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-0, biom-0.3.12, bit-1.1-14, bit64-0.9-7, bitops-1.0-6, blob-1.2.0, BMA-3.18.11, bmp-0.3, bnlearn-4.5, bold-0.9.0, boot-1.3-23, bootstrap-2019.6, Boruta-6.0.0, brew-1.0-6, brglm-0.6.2, bridgedist-0.1.0, bridgesampling-0.7-2, Brobdingnag-1.2-6, broom-0.5.3, bst-0.3-17, c-o, Cairo-1.5-10, calibrate-1.7.5, callr-3.4.0, car-3.0-5, carData-3.0-3, caret-6.0-84, caTools-1.17.1.3, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1, checkmate-1.9.4, chemometrics-1.4.2, chron-2.3-54, circlize-0.4.8, circular-0.4-93, class-7.3-15, classInt-0.4-2, cli-2.0.0, clipr-0.7.0, clisymbols-1.2.0, clue-0.3-57, cluster-2.1.0, clusterGeneration-1.3.4, clusterRepro-0.9, clustree-0.4.1, clValid-0.6-6, cobs-1.3-3, coda-0.19-3, codetools-0.2-16, coin-1.3-1, colorspace-1.4-1, colourpicker-1.0, combinat-0.0-8, ComICS-1.0.4, commonmark-1.7, compositions-1.40-3, corpcor-1.6.9, corrplot-0.84, covr-3.4.0, CovSel-1.2.1, cowplot-1.0.0, crayon-1.3.4, crosstalk-1.0.0, crul-0.9.0, csSAM-1.2.4, ctmle-0.1.2, cubature-2.0.4, curl-4.3, cvAUC-1.1.0, CVST-0.2-2, d-a, d3Network-0.5.2.1, data.table-1.12.8, DBI-1.1.0, dbplyr-1.4.2, ddalpha-1.3.10, deal-1.2-39, debugme-1.1.0, deldir-0.1-23, dendextend-1.13.2, DEoptimR-1.0-8, Deriv-4.0, desc-1.2.0, deSolve-1.25, devtools-2.2.1, DHARMa-0.2.6, dHSIC-2.1, diagram-1.6.4, DiagrammeR-1.0.1, dichromat-2.0-0, digest-0.6.23, dimRed-0.2.3, diptest-0.75-7, DiscriMiner-0.1-29, dismo-1.1-4, distillery-1.0-6, distr-2.8.0, distrEx-2.8.0, DistributionUtils-0.6-0, diveRsity-1.9.90, doMC-1.3.6, doParallel-1.0.15, doRNG-1.7.1, doSNOW-1.0.18, dotCall64-1.0-0, downloader-0.4, dplyr-0.8.3, dr-3.0.10, DRR-0.0.3, DT-0.10, dtangle-2.0.9, DTRreg-1.5, dtw-1.21-3, dummies-1.5.6, dynamicTreeCut-1.63-1, e1071-1.7-3, EasyABC-1.5, ellipse-0.4.1, ellipsis-0.3.0, emdbook-1.3.11, emulator-1.2-20, energy-1.7-7, entropy-1.2.1, ergm-3.10.4, ergm.count-3.4.0, evaluate-0.14, expm-0.999-4, expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-11, FactoMineR-2.0, fail-1.3, fansi-0.4.0, farver-2.0.1, fastcluster-1.1.25, fastICA-1.2-2, fastmap-1.0.1, fastmatch-1.1-0, fdrtool-1.2.15, feather-0.3.5, ff-2.2-14, ffbase-0.12.7, fftw-1.0-5, fftwtools-0.9-8, fields-10.0, filehash-2.4-2, findpython-1.0.5, fishMod-0.29, fitdistrplus-1.0-14, flashClust-1.01-2, flexclust-1.4-0, flexmix-2.3-15, fma-2.3, FME-1.3.5, FNN-1.1.3, forcats-0.4.0, foreach-1.4.7, forecast-8.10, foreign-0.8-72, formatR-1.7, Formula-1.2-3, fossil-0.3.7, fpc-2.2-3, fpp-0.5, fracdiff-1.5-0, fs-1.3.1, futile.logger-1.4.3, futile.options-1.0.1, future-1.15.1, future.apply-1.4.0, g-r, g-r, g-r, gam-1.16.1, gamlss-5.1-5, gamlss.data-5.1-4, gamlss.dist-5.1-5, gamlss.tr-5.1-0, gap-1.2.1, gapfill-0.9.6, gbm-2.1.5, gbRd-0.4-11, gclus-1.3.2, gdata-2.18.0, gdistance-1.2-2, gee-4.13-20, geepack-1.3-1, geiger-2.0.6.2, GeneNet-1.2.13, generics-0.0.2, GenSA-1.1.7, geometry-0.4.5, getopt-1.20.3, GetoptLong-0.1.7, GGally-1.4.0, ggbeeswarm-0.6.0, ggExtra-0.9, ggfan-0.1.3, ggforce-0.3.1, ggm-2.3, ggnetwork-0.5.8, ggplot2-3.2.1, ggpubr-0.3.0, ggraph-2.0.0, ggrepel-0.8.1, ggridges-0.5.1, ggsci-2.9, ggsignif-0.6.0, ggvis-0.4.5, gh-1.0.1, GillespieSSA-0.6.1, git2r-0.26.1, glasso-1.11, gllvm-1.1.7, glmmML-1.1.0, glmmTMB-0.2.3, glmnet-3.0-2, GlobalOptions-0.1.1, globals-0.12.5, glue-1.3.1, gmm-1.6-4, gmodels-2.18.1, goftest-1.2-2, gomms-1.0, gower-0.2.1, gplots-3.0.1.1, graphlayouts-0.5.0, gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.2-1, GSA-1.03.1, gsalib-2.1, gsw-1.0-5, gtable-0.3.0, gtools-3.8.1, GUTS-1.1.1, h2o-3.26.0.2, haven-2.2.0, hdf5r-1.3.0, hdm-0.3.1, heatmap3-1.1.6, hexbin-1.28.0, HiddenMarkov-1.8-11, highr-0.8, Hmisc-4.3-0, hms-0.5.2, htmlTable-1.13.3, htmltools-0.4.0, htmlwidgets-1.5.1, httpcode-0.2.0, httpuv-1.5.2, httr-1.4.1, huge-1.3.4, hunspell-3.0, hwriter-1.3.2, HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.19, idr-1.2, igraph-1.2.4.2, imager-0.41.2, imagerExtra-1.3.2, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0, ini-0.3.1, inline-0.3.15, intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-1, ipred-0.9-9, irace-3.3, irlba-2.3.3, Iso-0.0-18, ISOcodes-2019.04.22, iterators-1.0.12, itertools-0.1-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1, jomo-2.6-10, jpeg-0.1-8.1, jsonlite-1.6, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-16, klaR-0.6-14, knitr-1.26, KODAMA-1.5, kohonen-3.0.10, ks-1.11.6, labdsv-2.0-1, labeling-0.3, labelled-2.2.1, laeken-0.5.0, lambda.r-1.2.4, LaplacesDemon-16.1.1, lars-1.2, later-1.0.0, lattice-0.20-38, latticeExtra-0.6-28, lava-1.6.6, lavaan-0.6-5, lazy-1.2-16, lazyeval-0.2.2, lda-1.4.2, leaps-3.0, LearnBayes-2.15.1, leiden-0.3.3, lhs-1.0.1, libcoin-1.0-5, lifecycle-0.1.0, limSolve-1.5.6, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-21, lmerTest-3.1-1, Lmoments-1.3-1, lmtest-0.9-37, locfdr-1.1-8, locfit-1.5-9.1, logcondens-2.1.5, logistf-1.23, logspline-2.1.15, longitudinal-1.1.12, longmemo-1.1-1, loo-2.2.0, lpSolve-5.6.13.3, lqa-1.0-3, lsei-1.2-0, lubridate-1.7.4, m-e, magic-1.5-9, magick-2.2, magrittr-1.5, MALDIquant-1.19.3, manipulateWidget-0.10.0, maps-3.3.0, maptools-0.9-9, markdown-1.1, MASS-7.3-51.4, Matching-4.9-6, MatchIt-3.0.2, Matrix-1.2-18, matrixcalc-1.0-3, MatrixModels-0.4-1, matrixStats-0.55.0, maxLik-1.3-6, mboost-2.9-1, mclust-5.4.5, mcmc-0.9-6, MCMCpack-1.4-5, medflex-0.6-6, mediation-4.5.0, memoise-1.1.0, memuse-4.0-0, mgcv-1.8-31, mi-1.0, mice-3.7.0, MIIVsem-0.5.4, mime-0.7, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.8-4, miscTools-0.6-26, missForest-1.4, mitml-0.3-7, mixtools-1.1.0, mlbench-2.1-1, mlegp-3.1.7, mlogit-1.0-2, mlr-2.16.0, mltools-0.3.5, mnormt-1.5-5, ModelMetrics-1.2.2, modelr-0.1.5, modeltools-0.2-22, moments-0.14, mpath-0.3-20, mRMRe-2.1.0, msm-1.6.7, multcomp-1.4-11, multicool-0.1-11, munsell-0.5.0, mvabund-4.0.1, mvnfast-0.2.5, mvtnorm-1.0-11, natserv-0.3.0, ncbit-2013.03.29, network-1.16.0, networkDynamic-0.10.0, neuRosim-0.2-12, nleqslv-3.3.2, nlme-3.1-143, nloptr-1.2.1, NLP-0.2-0, NMF-0.21.0, nnet-7.3-12, nnls-1.4, nor1mix-1.3-0, np-0.60-9, npsurv-0.4-0, numDeriv-2016.8-1.1, oce-1.1-1, OceanView-1.0.4, oddsratio-2.0.0, openssl-1.4.1, openxlsx-4.1.4, optmatch-0.9-13, optparse-1.6.4, ordinal-2019.12-10, p-a, packrat-0.5.0, pan-1.6, parallelMap-1.4, ParamHelpers-1.13, parsedate-1.2.0, party-1.3-3, partykit-1.2-5, pastecs-1.3.21, patchwork-1.0.0, pbapply-1.4-2, pbivnorm-0.6.0, pbkrtest-0.4-7, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7.1, permute-0.9-5, phangorn-2.5.5, pheatmap-1.0.12, phylobase-0.8.6, pillar-1.4.2, pim-2.0.1, pinfsc50-1.1.0, pixmap-0.4-11, pkgbuild-1.0.6, pkgconfig-2.0.3, pkgload-1.0.2, pkgmaker-0.27, plogr-0.2.0, plot3D-1.1.1, plot3Drgl-1.0.1, plotly-4.9.1, plotrix-3.7-7, pls-2.7-2, plyr-1.8.5, png-0.1-7, PoissonSeq-1.1.2, polspline-1.1.17, polyclip-1.10-0, polynom-1.4-0, prabclus-2.3-1, pracma-2.2.9, praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyunits-1.0.2, pROC-1.15.3, processx-3.4.1, prodlim-2019.11.13, profileModel-0.6.0, progress-1.2.2, promises-1.1.0, proto-1.0.0, proxy-0.4-23, pryr-0.1.4, ps-1.3.0, pscl-1.5.2, pspline-1.0-18, psych-1.8.12, pulsar-0.3.6, purrr-0.3.3, pvclust-2.2-0, qgraph-1.6.4, qqman-0.1.4, qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4-15, quantreg-5.54, questionr-0.7.0, R.cache-0.14.0, R.matlab-3.6.2, R.methodsS3-1.7.1, R.oo-1.23.0, R.rsp-0.43.2, R.utils-2.9.2, R6-2.4.1, randomForest-4.6-14, randomForestSRC-2.9.2, ranger-0.11.2, RANN-2.6.1, raster-3.0-7, rasterVis-0.47, Rborist-0.2-3, RCircos-1.2.1, rcmdcheck-1.3.3, RColorBrewer-1.1-2, Rcpp-1.0.3, RcppArmadillo-0.9.800.3.0, RcppEigen-0.3.3.7.0, RcppGSL-0.3.7, RcppProgress-0.4.1, RcppRoll-0.3.0, RCurl-1.95-4.12, rda-1.0.2-2.1, Rdpack-0.11-1, readbitmap-0.1.5, readr-1.3.1, readxl-1.3.1, recipes-0.1.7, registry-0.5-1, rematch-1.0.1, rematch2-2.1.0, remotes-2.1.0, rentrez-1.2.2, reprex-0.3.0, resample-0.4, reshape-0.8.8, reshape2-1.4.3, reticulate-1.13, rex-1.1.2, RGCCA-2.1.2, rgexf-0.15.3, rgl-0.100.30, RInside-0.2.15, rio-0.5.16, ritis-0.8.0, RItools-0.1-17, rJava-0.9-11, rjson-0.2.20, RJSONIO-1.3-1.3, rlang-0.4.2, rlecuyer-0.3-5, rmarkdown-2.0, rmeta-3.0, Rmpi-0.6-9, rms-5.1-4, RMTstat-0.3, rncl-0.8.3, RNeXML-2.4.0, rngtools-1.4, robustbase-0.93-5, ROCR-1.0-7, Rook-1.1-1, rootSolve-1.8.1, rotl-3.0.10, roxygen2-7.0.2, rpart-4.1-15, rprojroot-1.3-2, rrcov-1.4-9, rredlist-0.5.0, Rserve-1.7-3.1, RSNNS-0.4-12, RSQLite-2.1.4, Rssa-1.0, rstan-2.19.2, rstatix-0.5.0, rstudioapi-0.10, Rtsne-0.15, Rttf2pt1-1.3.7, RUnit-0.4.32, rversions-2.0.1, rvest-0.3.5, RWeka-0.4-41, RWekajars-3.9.3-2, s-p, s-t, s-t, sampling-2.8, sandwich-2.5-1, scales-1.1.0, scatterplot3d-0.3-41, sctransform-0.2.1, SDMTools-1.1-221.2, seewave-2.1.5, segmented-1.1-0, selectr-0.4-2, sem-3.1-9, sendmailR-1.2-1, seqinr-3.6-1, sessioninfo-1.1.1, sfsmisc-1.1-4, shape-1.4.4, shapefiles-0.7, shiny-1.4.0, shinydashboard-0.7.1, shinyjs-1.1, shinythemes-1.1.2, signal-0.7-6, SignifReg-2.1, SimSeq-1.4.0, SKAT-1.3.2.1, slam-0.1-46, sm-2.2-5.6, smoother-1.1, sn-1.5-4, sna-2.5, snow-0.4-3, SnowballC-0.6.0, snowfall-1.84-6.1, SOAR-0.99-11, solrium-1.1.4, som-0.3-5.1, soundecology-1.3.3, sourcetools-0.1.7, sp-1.3-2, spam-2.5-1, spaMM-3.0.0, SparseM-1.78, spatial-7.3-11, spatstat-1.62-2, spatstat.data-1.4-0, spatstat.utils-1.15-0, spData-0.3.2, splitstackshape-1.4.8, spls-2.2-3, SQUAREM-2017.10-1, stabledist-0.7-1, stabs-0.6-3, StanHeaders-2.21.0-1, startupmsg-0.9.6, statmod-1.4.32, statnet-2019.6, statnet.common-4.3.0, stopwords-1.0, stringi-1.4.3, stringr-1.4.0, strucchange-1.5-2, subplex-1.5-4, SuperLearner-2.0-26, SuppDists-1.1-9.4, survival-3.1-8, survivalROC-1.0.3, svd-0.5, sys-3.3, t-c, t-o, taxize-0.9.91, tclust-1.4-1, TeachingDemos-2.10, tensor-1.5, tensorA-0.36.1, tergm-3.6.1, testthat-2.3.1, TFisher-0.2.0, TH.data-1.0-10, threejs-0.3.1, tibble-2.1.3, tictoc-1.0, tidygraph-1.1.2, tidyr-1.0.0, tidyselect-0.2.5, tidytext-0.2.2, tidyverse-1.3.0, tiff-0.1-5, timeDate-3043.102, timereg-1.9.4, tinytex-0.18, tkrplot-0.0-24, tm-0.7-7, TMB-1.7.15, tmle-1.4.0.1, tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-9, TraMineR-2.0-13, tree-1.0-40, triebeard-0.3.0, trimcluster-0.1-2.1, tripack-1.3-8, trust-0.1-7, tseries-0.10-47, tseriesChaos-0.1-13.1, tsna-0.3.0, tsne-0.1-3, TTR-0.23-6, tuneR-1.3.3, tweedie-2.3.2, tweenr-1.0.1, u-t, ucminf-1.1-4, unbalanced-2.0, uniqueAtomMat-0.1-3-2, units-0.6-5, urca-1.3-0, urltools-1.7.3, uroot-2.1-0, usethis-1.5.1, utf8-1.1.4, uuid-0.1-2, vcd-1.4-4, vcfR-1.8.0, vctrs-0.2.0, vegan-2.5-6, VennDiagram-1.6.20, VGAM-1.1-2, VIM-4.8.0, vioplot-0.3.4, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.9, VSURF-1.1.0, waveslim-1.7.5.1, webshot-0.5.2, whisker-0.4, WikidataR-1.4.0, WikipediR-1.5.0, wikitaxa-0.3.0, withr-2.1.2, worrms-0.4.0, WriteXLS-5.0.0, xfun-0.11, xlsx-0.6.1, xlsxjars-0.6.1, XML-3.98-1.20, xml2-1.2.2, xopen-1.0.0, xtable-1.8-4, xts-0.11-2, yaImpute-1.0-32, yaml-2.2.0, zeallot-0.1.0, zip-2.0.4, zoo-1.8-6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/R2jags.md b/mkdocs/docs/HPC/only/gent/available_software/detail/R2jags.md index 59e7e8df7475..d40989bd2661 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/R2jags.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/R2jags.md @@ -6,6 +6,10 @@ hide: R2jags ====== + +Providing wrapper functions to implement Bayesian analysis in JAGS. + +https://cran.r-project.org/web/packages/R2jags # Available modules @@ -17,8 +21,8 @@ To start using R2jags, load one of these modules using a `module load` command l module load R2jags/0.7-1-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|R2jags/0.7-1-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|R2jags/0.7-1-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RASPA2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RASPA2.md index 140caed635fc..48ba1461e0ee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RASPA2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RASPA2.md @@ -6,6 +6,10 @@ hide: RASPA2 ====== + +RASPA is a software package for simulating adsorption and diffusion ofmolecules in flexible nanoporous materials. + +https://iraspa.org/raspa/ # Available modules @@ -17,8 +21,8 @@ To start using RASPA2, load one of these modules using a `module load` command l module load RASPA2/2.0.41-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RASPA2/2.0.41-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RASPA2/2.0.41-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML-NG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML-NG.md index 2ff2ad81f63e..53a76f89c84f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML-NG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML-NG.md @@ -6,6 +6,10 @@ hide: RAxML-NG ======== + +RAxML-NG is a phylogenetic tree inference tool whichuses maximum-likelihood (ML) optimality criterion. Its search heuristic is based on iteratively performing a series of Subtree Pruning and Regrafting (SPR) moves, which allows to quickly navigate to the best-known ML tree. + +https://github.com/amkozlov/raxml-ng # Available modules @@ -14,13 +18,14 @@ The overview below shows which RAxML-NG installations are available per HPC-UGen To start using RAxML-NG, load one of these modules using a `module load` command like: ```shell -module load RAxML-NG/1.0.3-GCC-10.2.0 +module load RAxML-NG/1.2.0-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RAxML-NG/1.0.3-GCC-10.2.0|-|x|x|-|x|-|x|-| -|RAxML-NG/0.9.0-gompi-2019b|-|x|x|-|x|x|-|x| -|RAxML-NG/0.9.0-GCC-8.3.0|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RAxML-NG/1.2.0-GCC-12.3.0|x|x|x|x|x|x| +|RAxML-NG/1.0.3-GCC-10.2.0|-|x|x|-|x|-| +|RAxML-NG/0.9.0-gompi-2019b|-|x|x|-|x|x| +|RAxML-NG/0.9.0-GCC-8.3.0|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML.md index 0d99222529c1..34c6cd13ee3c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RAxML.md @@ -6,6 +6,10 @@ hide: RAxML ===== + +RAxML search algorithm for maximum likelihood based inference of phylogenetic trees. + +https://github.com/stamatak/standard-RAxML # Available modules @@ -17,9 +21,9 @@ To start using RAxML, load one of these modules using a `module load` command li module load RAxML/8.2.12-iimpi-2021b-hybrid-avx2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RAxML/8.2.12-iimpi-2021b-hybrid-avx2|x|x|x|-|x|x|x|x| -|RAxML/8.2.12-iimpi-2019b-hybrid-avx2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RAxML/8.2.12-iimpi-2021b-hybrid-avx2|x|x|x|-|x|x| +|RAxML/8.2.12-iimpi-2019b-hybrid-avx2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RDFlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RDFlib.md index 3a653599c979..91b5ffcecd8f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RDFlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RDFlib.md @@ -6,6 +6,10 @@ hide: RDFlib ====== + +RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information. + +https://github.com/RDFLib/rdflib # Available modules @@ -17,10 +21,29 @@ To start using RDFlib, load one of these modules using a `module load` command l module load RDFlib/6.2.0-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RDFlib/6.2.0-GCCcore-10.3.0|x|x|x|-|x|x| +|RDFlib/5.0.0-GCCcore-10.2.0|-|x|x|-|x|x| +|RDFlib/4.2.2-GCCcore-8.3.0|-|x|x|-|x|x| + + +### RDFlib/6.2.0-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +isodate-0.6.1, rdflib-6.2.0 + +### RDFlib/5.0.0-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +isodate-0.6.0, rdflib-5.0.0 + +### RDFlib/4.2.2-GCCcore-8.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RDFlib/6.2.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|RDFlib/5.0.0-GCCcore-10.2.0|-|x|x|-|x|x|x|x| -|RDFlib/4.2.2-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +isodate-0.6.0, rdflib-4.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RDKit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RDKit.md index 04b5f9b9a39b..470fceea6273 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RDKit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RDKit.md @@ -6,6 +6,10 @@ hide: RDKit ===== + +RDKit is a collection of cheminformatics and machine-learning software written in C++ and Python. + +https://www.rdkit.org # Available modules @@ -17,11 +21,11 @@ To start using RDKit, load one of these modules using a `module load` command li module load RDKit/2022.09.4-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RDKit/2022.09.4-foss-2022a|x|x|x|x|x|x|x|x| -|RDKit/2022.03.5-foss-2021b|x|x|x|-|x|x|x|x| -|RDKit/2020.09.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|RDKit/2020.03.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RDKit/2022.09.4-foss-2022a|x|x|x|x|x|x| +|RDKit/2022.03.5-foss-2021b|x|x|x|-|x|x| +|RDKit/2020.09.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|RDKit/2020.03.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RDP-Classifier.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RDP-Classifier.md index 1013c1a42f5b..f6dafff1c7e9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RDP-Classifier.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RDP-Classifier.md @@ -6,6 +6,10 @@ hide: RDP-Classifier ============== + +The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. + +http://sourceforge.net/projects/rdp-classifier # Available modules @@ -17,9 +21,9 @@ To start using RDP-Classifier, load one of these modules using a `module load` c module load RDP-Classifier/2.13-Java-11 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RDP-Classifier/2.13-Java-11|x|x|x|-|x|x|x|x| -|RDP-Classifier/2.12-Java-1.8|-|-|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RDP-Classifier/2.13-Java-11|x|x|x|-|x|x| +|RDP-Classifier/2.12-Java-1.8|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RE2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RE2.md index cfaf4dd17329..e49e028e83f5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RE2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RE2.md @@ -6,6 +6,10 @@ hide: RE2 === + +RE2 is a fast, safe, thread-friendly alternative to backtracking regularexpression engines like those used in PCRE, Perl, and Python. It is a C++library. + +https://github.com/google/re2 # Available modules @@ -14,13 +18,14 @@ The overview below shows which RE2 installations are available per HPC-UGent Tie To start using RE2, load one of these modules using a `module load` command like: ```shell -module load RE2/2023-03-01-GCCcore-12.2.0 +module load RE2/2023-08-01-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RE2/2023-03-01-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|RE2/2022-06-01-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|RE2/2022-02-01-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RE2/2023-08-01-GCCcore-12.3.0|x|x|x|x|x|x| +|RE2/2023-03-01-GCCcore-12.2.0|x|x|x|x|x|x| +|RE2/2022-06-01-GCCcore-11.3.0|x|x|x|x|x|x| +|RE2/2022-02-01-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RLCard.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RLCard.md index 8ea752962919..717b43d832ac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RLCard.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RLCard.md @@ -6,6 +6,10 @@ hide: RLCard ====== + +RLCard is a toolkit for Reinforcement Learning (RL) in card games. + +https://www.rlcard.org # Available modules @@ -17,8 +21,15 @@ To start using RLCard, load one of these modules using a `module load` command l module load RLCard/1.0.9-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RLCard/1.0.9-foss-2022a|x|x|x|-|x|x| + + +### RLCard/1.0.9-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RLCard/1.0.9-foss-2022a|x|x|x|-|x|x|x|x| +rlcard-1.0.9, termcolor-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RMBlast.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RMBlast.md index 0a873879f15f..20dccebf098b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RMBlast.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RMBlast.md @@ -6,6 +6,10 @@ hide: RMBlast ======= + +RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program 'rmblastn' for use with RepeatMasker and RepeatModeler. + +https://www.repeatmasker.org/RMBlast.html # Available modules @@ -17,8 +21,8 @@ To start using RMBlast, load one of these modules using a `module load` command module load RMBlast/2.11.0-gompi-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RMBlast/2.11.0-gompi-2020b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RMBlast/2.11.0-gompi-2020b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RNA-Bloom.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RNA-Bloom.md index 72340e85e744..b50769516a54 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RNA-Bloom.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RNA-Bloom.md @@ -6,6 +6,10 @@ hide: RNA-Bloom ========= + +RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. + +https://github.com/bcgsc/RNA-Bloom # Available modules @@ -14,11 +18,12 @@ The overview below shows which RNA-Bloom installations are available per HPC-UGe To start using RNA-Bloom, load one of these modules using a `module load` command like: ```shell -module load RNA-Bloom/1.2.3-GCC-8.3.0 +module load RNA-Bloom/2.0.1-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RNA-Bloom/1.2.3-GCC-8.3.0|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RNA-Bloom/2.0.1-GCC-12.3.0|x|x|x|x|x|x| +|RNA-Bloom/1.2.3-GCC-8.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ROOT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ROOT.md index 0726a2ee58a1..a78279aa47a4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ROOT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ROOT.md @@ -6,6 +6,10 @@ hide: ROOT ==== + +The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way. + +https://root.cern.ch/drupal/ # Available modules @@ -17,10 +21,10 @@ To start using ROOT, load one of these modules using a `module load` command lik module load ROOT/6.26.06-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ROOT/6.26.06-foss-2022a|x|x|x|x|x|x|x|x| -|ROOT/6.24.06-foss-2021b|x|x|x|x|x|x|x|x| -|ROOT/6.20.04-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ROOT/6.26.06-foss-2022a|x|x|x|x|x|x| +|ROOT/6.24.06-foss-2021b|x|x|x|x|x|x| +|ROOT/6.20.04-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RSEM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RSEM.md index b781608601a0..b8ba77efe859 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RSEM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RSEM.md @@ -6,6 +6,10 @@ hide: RSEM ==== + +RNA-Seq by Expectation-Maximization + +https://deweylab.github.io/RSEM/ # Available modules @@ -17,8 +21,8 @@ To start using RSEM, load one of these modules using a `module load` command lik module load RSEM/1.3.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RSEM/1.3.3-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RSEM/1.3.3-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RSeQC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RSeQC.md index 76c32e1fec6c..c0bcf369d183 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RSeQC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RSeQC.md @@ -6,6 +6,10 @@ hide: RSeQC ===== + +RSeQC provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. Some basic modules quickly inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, transcript level RNA integrity etc. + +http://rseqc.sourceforge.net/ # Available modules @@ -17,9 +21,9 @@ To start using RSeQC, load one of these modules using a `module load` command li module load RSeQC/4.0.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RSeQC/4.0.0-foss-2021b|x|x|x|-|x|x|x|x| -|RSeQC/4.0.0-foss-2020a-Python-3.8.2|-|-|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RSeQC/4.0.0-foss-2021b|x|x|x|-|x|x| +|RSeQC/4.0.0-foss-2020a-Python-3.8.2|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RStudio-Server.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RStudio-Server.md index 5fde350cb1b1..04f6df4088b4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RStudio-Server.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RStudio-Server.md @@ -6,6 +6,10 @@ hide: RStudio-Server ============== + +This is the RStudio Server version.RStudio is a set of integrated tools designed to help you be more productive with R.The server can be started with: rserver --server-daemonize=0 --www-port 8787 --rsession-which-r=$(which R) + +https://www.rstudio.com/ # Available modules @@ -17,9 +21,9 @@ To start using RStudio-Server, load one of these modules using a `module load` c module load RStudio-Server/2022.02.0-443-rhel-x86_64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RStudio-Server/2022.02.0-443-rhel-x86_64|x|x|x|x|x|-|x|x| -|RStudio-Server/1.3.959-foss-2020a-Java-11-R-4.0.0|-|-|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RStudio-Server/2022.02.0-443-rhel-x86_64|x|x|x|x|x|-| +|RStudio-Server/1.3.959-foss-2020a-Java-11-R-4.0.0|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RTG-Tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RTG-Tools.md new file mode 100644 index 000000000000..c7e2e2c0f359 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RTG-Tools.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +RTG-Tools +========= + + +RTG Tools contains utilities to easily manipulate and accurately compare multiple VCF files, as well as utilities for processing other common NGS data formats. + +https://www.realtimegenomics.com/products/rtg-tools +# Available modules + + +The overview below shows which RTG-Tools installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using RTG-Tools, load one of these modules using a `module load` command like: + +```shell +module load RTG-Tools/3.12.1-Java-11 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RTG-Tools/3.12.1-Java-11|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Racon.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Racon.md index 2e852042e013..4df2c80778e4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Racon.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Racon.md @@ -6,6 +6,10 @@ hide: Racon ===== + +Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. + +https://github.com/lbcb-sci/racon # Available modules @@ -14,16 +18,17 @@ The overview below shows which Racon installations are available per HPC-UGent T To start using Racon, load one of these modules using a `module load` command like: ```shell -module load Racon/1.5.0-GCCcore-11.3.0 +module load Racon/1.5.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Racon/1.5.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Racon/1.5.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Racon/1.4.21-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|Racon/1.4.21-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|Racon/1.4.13-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Racon/1.4.13-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Racon/1.5.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Racon/1.5.0-GCCcore-11.3.0|x|x|x|x|x|x| +|Racon/1.5.0-GCCcore-11.2.0|x|x|x|-|x|x| +|Racon/1.4.21-GCCcore-10.3.0|x|x|x|-|x|x| +|Racon/1.4.21-GCCcore-10.2.0|-|x|x|x|x|x| +|Racon/1.4.13-GCCcore-9.3.0|-|x|x|-|x|x| +|Racon/1.4.13-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RagTag.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RagTag.md index 93d66be1944b..1b2e530744f6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RagTag.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RagTag.md @@ -6,6 +6,10 @@ hide: RagTag ====== + +RagTag is a collection of software tools for scaffolding andimproving modern genome assemblies. Tasks include: homology-based misassemblycorrection, homology-based assembly scaffolding and patching, and scaffoldmerging. RagTag also provides command line utilities for working with commongenome assembly file formats. + +https://github.com/malonge/RagTag # Available modules @@ -17,8 +21,8 @@ To start using RagTag, load one of these modules using a `module load` command l module load RagTag/2.0.1-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RagTag/2.0.1-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RagTag/2.0.1-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ragout.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ragout.md index aedd73b63ee5..baed1e8a5f0e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ragout.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ragout.md @@ -6,6 +6,10 @@ hide: Ragout ====== + +Ragout (Reference-Assisted Genome Ordering UTility) is a toolfor chromosome-level scaffolding using multiple references. Given initialassembly fragments (contigs/scaffolds) and one or multiple related references(complete or draft), it produces a chromosome-scale assembly (as a set ofscaffolds). + +https://github.com/fenderglass/Ragout # Available modules @@ -17,8 +21,8 @@ To start using Ragout, load one of these modules using a `module load` command l module load Ragout/2.3-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Ragout/2.3-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Ragout/2.3-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RapidJSON.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RapidJSON.md index 2680f08e0aac..1664f4a9ea53 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RapidJSON.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RapidJSON.md @@ -6,6 +6,10 @@ hide: RapidJSON ========= + +A fast JSON parser/generator for C++ with both SAX/DOM style API + +https://rapidjson.org # Available modules @@ -17,11 +21,12 @@ To start using RapidJSON, load one of these modules using a `module load` comman module load RapidJSON/1.1.0-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RapidJSON/1.1.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|RapidJSON/1.1.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|RapidJSON/1.1.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|RapidJSON/1.1.0-GCCcore-9.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RapidJSON/1.1.0-GCCcore-12.2.0|x|x|x|x|x|x| +|RapidJSON/1.1.0-GCCcore-11.3.0|x|x|x|x|x|x| +|RapidJSON/1.1.0-GCCcore-11.2.0|x|x|x|x|x|x| +|RapidJSON/1.1.0-GCCcore-9.3.0|x|x|x|x|x|x| +|RapidJSON/1.1.0-20230928-GCCcore-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Raven.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Raven.md index 2823ea7051c1..532f1fe1c0e1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Raven.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Raven.md @@ -6,6 +6,10 @@ hide: Raven ===== + +Raven is a de novo genome assembler for long uncorrected reads. + +https://github.com/lbcb-sci/raven # Available modules @@ -17,8 +21,15 @@ To start using Raven, load one of these modules using a `module load` command li module load Raven/1.8.1-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Raven/1.8.1-GCC-11.2.0|x|x|x|x|x|x| + + +### Raven/1.8.1-GCC-11.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Raven/1.8.1-GCC-11.2.0|x|x|x|x|x|x|x|x| +Raven-1.8.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ray-project.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ray-project.md index 1e2093f8736e..84602f2b83d8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ray-project.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ray-project.md @@ -6,6 +6,10 @@ hide: Ray-project =========== + +Ray is a fast and simple framework for building and running distributed applications. + +https://docs.ray.io/en/latest/ # Available modules @@ -17,10 +21,29 @@ To start using Ray-project, load one of these modules using a `module load` comm module load Ray-project/1.13.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Ray-project/1.13.0-foss-2021b|x|x|x|-|x|x| +|Ray-project/1.13.0-foss-2021a|x|x|x|-|x|x| +|Ray-project/0.8.4-foss-2019b-Python-3.7.4|-|-|x|-|x|x| + + +### Ray-project/1.13.0-foss-2021b + +This is a list of extensions included in the module: + +aiosignal-1.2.0, frozenlist-1.3.0, grpcio-1.43.0, Ray-1.13.0 + +### Ray-project/1.13.0-foss-2021a + +This is a list of extensions included in the module: + +aiosignal-1.2.0, frozenlist-1.3.0, grpcio-1.43.0, Ray-1.13.0 + +### Ray-project/0.8.4-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Ray-project/1.13.0-foss-2021b|x|x|x|-|x|x|x|x| -|Ray-project/1.13.0-foss-2021a|x|x|x|-|x|x|x|x| -|Ray-project/0.8.4-foss-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| +aiohttp-3.6.2, async-timeout-3.0.1, beautifulsoup4-4.9.0, click-7.1.1, colorama-0.4.3, filelock-3.0.12, google-2.0.3, grpcio-1.28.1, idna-ssl-1.1.0, importlib-metadata-1.6.0, jsonschema-3.2.0, lz4-3.0.2, msgpack-1.0.0, multidict-4.7.5, multidict-4.7.5, py-spy-0.3.3, pyrsistent-0.16.0, Ray-0.8.4, redis-3.4.1, soupsieve-2.0, typing-extensions-3.7.4.2, yarl-1.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ray.md index 6d9ecd4e4a33..d08e2dcd72d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ray.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ray.md @@ -6,6 +6,10 @@ hide: Ray === + +Ray is a fast and simple framework for building and running distributed applications. + +https://docs.ray.io/en/latest/ # Available modules @@ -17,8 +21,15 @@ To start using Ray, load one of these modules using a `module load` command like module load Ray/0.8.4-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Ray/0.8.4-foss-2019b-Python-3.7.4|-|x|-|-|-|-| + + +### Ray/0.8.4-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Ray/0.8.4-foss-2019b-Python-3.7.4|-|x|-|-|-|-|-|-| +aiohttp-3.6.2, async-timeout-3.0.1, beautifulsoup4-4.9.0, click-7.1.1, colorama-0.4.3, filelock-3.0.12, google-2.0.3, grpcio-1.28.1, idna-ssl-1.1.0, importlib-metadata-1.6.0, jsonschema-3.2.0, lz4-3.0.2, msgpack-1.0.0, multidict-4.7.5, multidict-4.7.5, py-spy-0.3.3, pyrsistent-0.16.0, Ray-0.8.4, redis-3.4.1, soupsieve-2.0, typing-extensions-3.7.4.2, yarl-1.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ReFrame.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ReFrame.md index de5e27273908..06bd2cfd8b34 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ReFrame.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ReFrame.md @@ -6,6 +6,10 @@ hide: ReFrame ======= + +ReFrame is a framework for writing regression tests for HPC systems. + +https://github.com/reframe-hpc/reframe # Available modules @@ -17,12 +21,43 @@ To start using ReFrame, load one of these modules using a `module load` command module load ReFrame/4.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ReFrame/4.2.0|x|x|x|x|x|x| +|ReFrame/3.11.2|-|x|x|x|x|x| +|ReFrame/3.11.1|-|x|x|-|x|x| +|ReFrame/3.9.1|-|x|x|-|x|x| +|ReFrame/3.5.2|-|x|x|-|x|x| + + +### ReFrame/4.2.0 + +This is a list of extensions included in the module: + +pip-21.3.1, reframe-4.2.0, wheel-0.37.1 + +### ReFrame/3.11.2 + +This is a list of extensions included in the module: + +pip-21.3.1, reframe-3.11.2, setuptools-59.6.0, wheel-0.37.1 + +### ReFrame/3.11.1 + +This is a list of extensions included in the module: + +pip-21.3.1, reframe-3.11.1, setuptools-58.5.3, wheel-0.37.1 + +### ReFrame/3.9.1 + +This is a list of extensions included in the module: + +pip-21.2.4, reframe-3.9.1, setuptools-57.4.0, wheel-0.37.0 + +### ReFrame/3.5.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ReFrame/4.2.0|x|x|x|x|x|x|x|x| -|ReFrame/3.11.2|-|x|x|x|x|x|x|x| -|ReFrame/3.11.1|-|x|x|-|x|x|x|x| -|ReFrame/3.9.1|-|x|x|-|x|x|x|x| -|ReFrame/3.5.2|-|x|x|-|x|x|x|x| +pip-21.0.1, reframe-3.5.2, setuptools-53.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Redis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Redis.md index 5d9bf570c8e3..33d83cf2bc00 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Redis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Redis.md @@ -6,6 +6,10 @@ hide: Redis ===== + +Redis is an open source (BSD licensed), in-memory data structure store, used asa database, cache, and message broker. Redis provides data structures such asstrings, hashes, lists, sets, sorted sets with range queries, bitmaps,hyperloglogs, geospatial indexes, and streams. Redis has built-in replication,Lua scripting, LRU eviction, transactions, and different levels of on-diskpersistence, and provides high availability via Redis Sentinel and automaticpartitioning with Redis Cluster. + +https://redis.io # Available modules @@ -17,10 +21,10 @@ To start using Redis, load one of these modules using a `module load` command li module load Redis/7.0.8-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Redis/7.0.8-GCC-11.3.0|x|x|x|x|x|x|x|x| -|Redis/6.2.6-GCC-11.2.0|x|x|x|-|x|x|x|x| -|Redis/6.2.6-GCC-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Redis/7.0.8-GCC-11.3.0|x|x|x|x|x|x| +|Redis/6.2.6-GCC-11.2.0|x|x|x|-|x|x| +|Redis/6.2.6-GCC-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RegTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RegTools.md index 79deba59e091..8b0e4fd31dac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RegTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RegTools.md @@ -6,6 +6,10 @@ hide: RegTools ======== + +RegTools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in aregulatory and splicing context. + +https://regtools.readthedocs.org # Available modules @@ -17,11 +21,11 @@ To start using RegTools, load one of these modules using a `module load` command module load RegTools/1.0.0-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RegTools/1.0.0-foss-2022b|x|x|x|x|x|x|x|x| -|RegTools/0.5.2-foss-2021b|x|x|x|x|x|x|x|x| -|RegTools/0.5.2-foss-2020b|-|x|x|x|x|x|x|x| -|RegTools/0.4.2-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RegTools/1.0.0-foss-2022b|x|x|x|x|x|x| +|RegTools/0.5.2-foss-2021b|x|x|x|x|x|x| +|RegTools/0.5.2-foss-2020b|-|x|x|x|x|x| +|RegTools/0.4.2-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RepeatMasker.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RepeatMasker.md index b3dae06ab81a..af2a0b424979 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RepeatMasker.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RepeatMasker.md @@ -6,6 +6,10 @@ hide: RepeatMasker ============ + +RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. + +https://www.repeatmasker.org/ # Available modules @@ -17,8 +21,8 @@ To start using RepeatMasker, load one of these modules using a `module load` com module load RepeatMasker/4.1.2-p1-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RepeatMasker/4.1.2-p1-foss-2020b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RepeatMasker/4.1.2-p1-foss-2020b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ResistanceGA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ResistanceGA.md index 6c4f4e09c6bf..ab6df3a5cd55 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ResistanceGA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ResistanceGA.md @@ -6,6 +6,10 @@ hide: ResistanceGA ============ + +An R package to optimize resistance surfaces using Genetic Algorithms. + +https://github.com/wpeterman/ResistanceGA # Available modules @@ -17,8 +21,15 @@ To start using ResistanceGA, load one of these modules using a `module load` com module load ResistanceGA/4.2-5-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ResistanceGA/4.2-5-foss-2022a-R-4.2.1|x|x|x|-|x|x| + + +### ResistanceGA/4.2-5-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ResistanceGA/4.2-5-foss-2022a-R-4.2.1|x|x|x|-|x|x|x|x| +GA-3.2.2, JuliaCall-0.17.5, MuMIn-1.47.1, ResistanceGA-4.2-5, spdep-1.2-7, XR-0.7.2, XRJulia-0.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RevBayes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RevBayes.md index c8a902f79602..93896f239c81 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RevBayes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RevBayes.md @@ -6,6 +6,10 @@ hide: RevBayes ======== + +RevBayes provides an interactive environment for statistical computation in phylogenetics. It is primarily intended for modeling, simulation, and Bayesian inference in evolutionary biology, particularly phylogenetics. + +https://revbayes.github.io # Available modules @@ -17,9 +21,9 @@ To start using RevBayes, load one of these modules using a `module load` command module load RevBayes/1.2.1-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RevBayes/1.2.1-gompi-2022a|x|x|x|x|x|x|x|x| -|RevBayes/1.1.1-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RevBayes/1.2.1-gompi-2022a|x|x|x|x|x|x| +|RevBayes/1.1.1-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Rgurobi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Rgurobi.md index 58fb0454f2bb..eb5c87343094 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Rgurobi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Rgurobi.md @@ -6,6 +6,10 @@ hide: Rgurobi ======= + +Gurobi Optimizer 9.5 interface + +https://www.gurobi.com # Available modules @@ -17,8 +21,8 @@ To start using Rgurobi, load one of these modules using a `module load` command module load Rgurobi/9.5.0-foss-2021b-R-4.1.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Rgurobi/9.5.0-foss-2021b-R-4.1.2|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Rgurobi/9.5.0-foss-2021b-R-4.1.2|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RheoTool.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RheoTool.md index c494c8edab58..ae4cd75cda19 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RheoTool.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RheoTool.md @@ -6,6 +6,10 @@ hide: RheoTool ======== + +RheoTool is an open-source toolbox based on OpenFOAM to simulate Generalized Newtonian Fluids (GNF)and viscoelastic fluids under pressure-driven and/or electrically-driven flows. + +https://github.com/fppimenta/rheoTool # Available modules @@ -17,8 +21,8 @@ To start using RheoTool, load one of these modules using a `module load` command module load RheoTool/5.0-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RheoTool/5.0-foss-2019b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RheoTool/5.0-foss-2019b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Rmath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Rmath.md index 8bc5ebd233f4..a855eb409bd1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Rmath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Rmath.md @@ -6,6 +6,10 @@ hide: Rmath ===== + +Rmath is the standalone version of the R math library. Rmath can be used in your own C/C++ routines. + +https://www.r-project.org/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which Rmath installations are available per HPC-UGent T To start using Rmath, load one of these modules using a `module load` command like: ```shell -module load Rmath/4.0.4-foss-2020b +module load Rmath/4.3.2-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Rmath/4.0.4-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Rmath/4.3.2-foss-2023a|x|x|x|x|x|x| +|Rmath/4.0.4-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/RnBeads.md b/mkdocs/docs/HPC/only/gent/available_software/detail/RnBeads.md index 72b8204fecc4..9d8dff69cb65 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/RnBeads.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/RnBeads.md @@ -6,6 +6,10 @@ hide: RnBeads ======= + +RnBeads is an R package for comprehensive analysis of DNA methylation data obtained with anyexperimental protocol that provides single-CpG resolution. + +https://rnbeads.org # Available modules @@ -17,8 +21,15 @@ To start using RnBeads, load one of these modules using a `module load` command module load RnBeads/2.6.0-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|RnBeads/2.6.0-foss-2020a-R-4.0.0|-|x|x|-|x|x| + + +### RnBeads/2.6.0-foss-2020a-R-4.0.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|RnBeads/2.6.0-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| +RnBeads-2.6.0, RnBeads.hg19-1.20.0, RnBeads.hg38-1.20.0, RnBeads.mm10-1.20.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Roary.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Roary.md index 505b1010be6a..564685350d51 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Roary.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Roary.md @@ -6,6 +6,10 @@ hide: Roary ===== + +Rapid large-scale prokaryote pan genome analysis + +https://github.com/sanger-pathogens/Roary # Available modules @@ -17,8 +21,8 @@ To start using Roary, load one of these modules using a `module load` command li module load Roary/3.13.0-foss-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Roary/3.13.0-foss-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Roary/3.13.0-foss-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Ruby.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Ruby.md index 974e09b76486..05126e5d0767 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Ruby.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Ruby.md @@ -6,6 +6,10 @@ hide: Ruby ==== + +Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write. + +https://www.ruby-lang.org # Available modules @@ -17,9 +21,22 @@ To start using Ruby, load one of these modules using a `module load` command lik module load Ruby/3.0.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Ruby/3.0.1-GCCcore-11.2.0|x|x|x|x|x|x| +|Ruby/3.0.1-GCCcore-10.3.0|x|x|x|-|x|x| + + +### Ruby/3.0.1-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +activesupport-5.2.6, addressable-2.8.0, arr-pm-0.0.11, backports-3.23.0, bundler-2.3.5, cabin-0.9.0, childprocess-4.1.0, clamp-1.3.2, concurrent-ruby-1.1.9, connection_pool-2.2.5, diff-lcs-1.5.0, ethon-0.15.0, faraday-1.0.0, faraday-net_http-2.0.1, faraday_middleware-1.2.0, ffi-1.15.5, gh-0.18.0, highline-2.0.3, i18n-1.8.11, json-2.6.1, launchy-2.5.0, minitest-5.15.0, multi_json-1.15.0, multipart-post-2.1.1, mustermann-1.1.1, net-http-persistent-2.9.4, net-http-pipeline-1.0.1, public_suffix-4.0.6, pusher-client-0.6.2, rack-2.2.3, rack-protection-2.1.0, rack-test-1.1.0, rspec-3.10.0, rspec-core-3.10.1, rspec-expectations-3.10.1, rspec-mocks-3.10.2, rspec-support-3.10.3, ruby2_keywords-0.0.5, sinatra-2.1.0, thread_safe-0.3.6, tilt-2.0.10, typhoeus-1.4.0, tzinfo-1.1.0, websocket-1.2.9, zeitwerk-2.5.3 + +### Ruby/3.0.1-GCCcore-10.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Ruby/3.0.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Ruby/3.0.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +activesupport-5.0.7.2, addressable-2.7.0, arr-pm-0.0.11, backports-3.21.0, bundler-2.2.21, cabin-0.9.0, childprocess-4.1.0, clamp-1.3.2, concurrent-ruby-1.1.9, connection_pool-2.2.5, diff-lcs-1.4.4, ethon-0.14.0, faraday-1.3.0, faraday-net_http-1.0.1, faraday_middleware-1.0.0, ffi-1.15.3, gh-0.18.0, highline-2.0.3, i18n-1.8.10, json-2.5.1, launchy-2.5.0, minitest-5.14.4, multi_json-1.15.0, multipart-post-2.1.1, mustermann-1.1.1, net-http-persistent-2.9.4, net-http-pipeline-1.0.1, public_suffix-4.0.6, pusher-client-0.6.2, rack-2.2.3, rack-protection-2.1.0, rack-test-1.1.0, rspec-3.10.0, rspec-core-3.10.1, rspec-expectations-3.10.1, rspec-mocks-3.10.2, rspec-support-3.10.2, ruby2_keywords-0.0.4, sinatra-2.1.0, thread_safe-0.3.6, tilt-2.0.10, typhoeus-1.4.0, tzinfo-1.1.0, websocket-1.2.9, zeitwerk-2.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md index accd6e91e8a7..4b78c30239db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Rust.md @@ -6,6 +6,10 @@ hide: Rust ==== + +Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety. + +https://www.rust-lang.org # Available modules @@ -14,20 +18,23 @@ The overview below shows which Rust installations are available per HPC-UGent Ti To start using Rust, load one of these modules using a `module load` command like: ```shell -module load Rust/1.70.0-GCCcore-12.3.0 +module load Rust/1.75.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Rust/1.70.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Rust/1.65.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Rust/1.65.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Rust/1.60.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Rust/1.60.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|Rust/1.56.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Rust/1.54.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Rust/1.52.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Rust/1.52.1-GCCcore-10.2.0|-|-|x|-|x|-|-|-| -|Rust/1.42.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Rust/1.75.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Rust/1.75.0-GCCcore-12.2.0|x|x|x|x|x|x| +|Rust/1.73.0-GCCcore-13.2.0|x|x|x|x|x|x| +|Rust/1.70.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Rust/1.65.0-GCCcore-12.2.0|x|x|x|x|x|x| +|Rust/1.65.0-GCCcore-11.3.0|x|x|x|x|x|x| +|Rust/1.60.0-GCCcore-11.3.0|x|x|x|x|x|x| +|Rust/1.60.0-GCCcore-10.3.0|x|x|x|-|x|x| +|Rust/1.56.0-GCCcore-11.2.0|x|x|x|-|x|x| +|Rust/1.54.0-GCCcore-11.2.0|x|x|x|x|x|x| +|Rust/1.52.1-GCCcore-10.3.0|x|x|x|x|x|x| +|Rust/1.52.1-GCCcore-10.2.0|-|-|x|-|x|-| +|Rust/1.42.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md index 0635f3d152ce..1b249c4750a4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SAMtools.md @@ -6,6 +6,10 @@ hide: SAMtools ======== + +SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. + +https://www.htslib.org/ # Available modules @@ -14,22 +18,24 @@ The overview below shows which SAMtools installations are available per HPC-UGen To start using SAMtools, load one of these modules using a `module load` command like: ```shell -module load SAMtools/1.17-GCC-12.2.0 +module load SAMtools/1.18-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SAMtools/1.17-GCC-12.2.0|x|x|x|x|x|x|x|x| -|SAMtools/1.16.1-GCC-11.3.0|x|x|x|x|x|x|x|x| -|SAMtools/1.15-GCC-11.2.0|x|x|x|-|x|x|x|x| -|SAMtools/1.14-GCC-11.2.0|x|x|x|x|x|x|x|x| -|SAMtools/1.13-GCC-11.3.0|x|x|x|x|x|x|x|x| -|SAMtools/1.13-GCC-10.3.0|x|x|x|-|x|x|x|x| -|SAMtools/1.11-GCC-10.2.0|x|x|x|x|x|x|x|x| -|SAMtools/1.10-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|SAMtools/1.10-GCC-9.3.0|-|x|x|-|x|x|x|x| -|SAMtools/1.10-GCC-8.3.0|-|x|x|-|x|x|x|x| -|SAMtools/0.1.20-intel-2019b|-|x|x|-|x|x|-|x| -|SAMtools/0.1.20-GCC-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SAMtools/1.18-GCC-12.3.0|x|x|x|x|x|x| +|SAMtools/1.17-GCC-12.2.0|x|x|x|x|x|x| +|SAMtools/1.16.1-GCC-11.3.0|x|x|x|x|x|x| +|SAMtools/1.15-GCC-11.2.0|x|x|x|-|x|x| +|SAMtools/1.14-GCC-11.2.0|x|x|x|x|x|x| +|SAMtools/1.13-GCC-11.3.0|x|x|x|x|x|x| +|SAMtools/1.13-GCC-10.3.0|x|x|x|-|x|x| +|SAMtools/1.11-GCC-10.2.0|x|x|x|x|x|x| +|SAMtools/1.10-iccifort-2019.5.281|-|x|x|-|x|x| +|SAMtools/1.10-GCC-9.3.0|-|x|x|-|x|x| +|SAMtools/1.10-GCC-8.3.0|-|x|x|-|x|x| +|SAMtools/0.1.20-intel-2019b|-|x|x|-|x|x| +|SAMtools/0.1.20-GCC-12.3.0|x|x|x|x|x|x| +|SAMtools/0.1.20-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SBCL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SBCL.md index 194e3282f43c..8b13e499212a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SBCL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SBCL.md @@ -6,6 +6,10 @@ hide: SBCL ==== + +Steel Bank Common Lisp (SBCL) is a high performance Common Lisp compiler. It isopen source / free software, with a permissive license. In addition to thecompiler and runtime system for ANSI Common Lisp, it provides an interactiveenvironment including a debugger, a statistical profiler, a code coverage tool,and many other extensions. + +http://sbcl.sourceforge.net/ # Available modules @@ -17,8 +21,8 @@ To start using SBCL, load one of these modules using a `module load` command lik module load SBCL/2.2.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SBCL/2.2.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SBCL/2.2.1-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SCENIC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SCENIC.md index acd97ff19136..a565cab93a8c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SCENIC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SCENIC.md @@ -6,6 +6,10 @@ hide: SCENIC ====== + +SCENIC Suite is a set of tools to study and decipher gene regulation. + +https://scenic.aertslab.org # Available modules @@ -17,8 +21,8 @@ To start using SCENIC, load one of these modules using a `module load` command l module load SCENIC/1.2.4-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SCENIC/1.2.4-foss-2021a-R-4.1.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SCENIC/1.2.4-foss-2021a-R-4.1.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SCGid.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SCGid.md index 81235f8c7d81..520abaf501d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SCGid.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SCGid.md @@ -6,6 +6,10 @@ hide: SCGid ===== + +A consensus approach to contig filtering and genome prediction from single-cell sequencing libraries + +https://github.com/amsesk/SCGid # Available modules @@ -17,8 +21,15 @@ To start using SCGid, load one of these modules using a `module load` command li module load SCGid/0.9b0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SCGid/0.9b0-foss-2021b|x|x|x|-|x|x| + + +### SCGid/0.9b0-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SCGid/0.9b0-foss-2021b|x|x|x|-|x|x|x|x| +ClaMS-CLI-31012020, ESOM-1.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SCOTCH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SCOTCH.md index b9cda4512020..36c3f080bdb6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SCOTCH.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SCOTCH.md @@ -6,6 +6,10 @@ hide: SCOTCH ====== + +Software package and libraries for sequential and parallel graph partitioning,static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning. + +https://gforge.inria.fr/projects/scotch/ # Available modules @@ -14,21 +18,23 @@ The overview below shows which SCOTCH installations are available per HPC-UGent To start using SCOTCH, load one of these modules using a `module load` command like: ```shell -module load SCOTCH/7.0.1-gompi-2022a +module load SCOTCH/7.0.3-gompi-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SCOTCH/7.0.1-gompi-2022a|x|x|x|x|x|x|x|x| -|SCOTCH/6.1.2-iimpi-2021b|x|x|x|x|x|x|x|x| -|SCOTCH/6.1.2-gompi-2021b|x|x|x|x|x|x|x|x| -|SCOTCH/6.1.0-iimpi-2021a|-|x|x|-|x|x|x|x| -|SCOTCH/6.1.0-iimpi-2020b|-|x|-|-|-|-|-|-| -|SCOTCH/6.1.0-gompi-2021a|x|x|x|x|x|x|x|x| -|SCOTCH/6.1.0-gompi-2020b|x|x|x|x|x|x|x|x| -|SCOTCH/6.0.9-iimpi-2020a|-|x|x|-|x|x|x|x| -|SCOTCH/6.0.9-iimpi-2019b|-|x|x|-|x|x|-|x| -|SCOTCH/6.0.9-gompi-2020a|-|x|x|-|x|x|x|x| -|SCOTCH/6.0.9-gompi-2019b|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SCOTCH/7.0.3-gompi-2023a|x|x|x|x|x|x| +|SCOTCH/7.0.3-gompi-2022b|x|x|x|x|x|x| +|SCOTCH/7.0.1-gompi-2022a|x|x|x|x|x|x| +|SCOTCH/6.1.2-iimpi-2021b|x|x|x|x|x|x| +|SCOTCH/6.1.2-gompi-2021b|x|x|x|x|x|x| +|SCOTCH/6.1.0-iimpi-2021a|-|x|x|-|x|x| +|SCOTCH/6.1.0-iimpi-2020b|-|x|-|-|-|-| +|SCOTCH/6.1.0-gompi-2021a|x|x|x|x|x|x| +|SCOTCH/6.1.0-gompi-2020b|x|x|x|x|x|x| +|SCOTCH/6.0.9-iimpi-2020a|-|x|x|-|x|x| +|SCOTCH/6.0.9-iimpi-2019b|-|x|x|-|x|x| +|SCOTCH/6.0.9-gompi-2020a|-|x|x|-|x|x| +|SCOTCH/6.0.9-gompi-2019b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SCons.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SCons.md index c5078b815af0..b0b6c78ffcc9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SCons.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SCons.md @@ -6,6 +6,10 @@ hide: SCons ===== + +SCons is a software construction tool. + +https://www.scons.org/ # Available modules @@ -14,16 +18,30 @@ The overview below shows which SCons installations are available per HPC-UGent T To start using SCons, load one of these modules using a `module load` command like: ```shell -module load SCons/4.4.0-GCCcore-11.3.0 +module load SCons/4.5.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SCons/4.5.2-GCCcore-12.3.0|x|x|x|x|x|x| +|SCons/4.4.0-GCCcore-11.3.0|-|-|x|-|x|-| +|SCons/4.2.0-GCCcore-11.2.0|x|x|x|-|x|x| +|SCons/4.1.0.post1-GCCcore-10.3.0|-|x|x|-|x|x| +|SCons/4.1.0.post1-GCCcore-10.2.0|-|x|x|-|x|x| +|SCons/3.1.2-GCCcore-9.3.0|-|x|x|-|x|x| +|SCons/3.1.1-GCCcore-8.3.0|-|x|x|-|x|x| + + +### SCons/4.5.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +SCons-4.5.2 + +### SCons/4.4.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SCons/4.4.0-GCCcore-11.3.0|-|-|x|-|x|-|-|-| -|SCons/4.2.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|SCons/4.1.0.post1-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|SCons/4.1.0.post1-GCCcore-10.2.0|-|x|x|-|x|x|x|x| -|SCons/3.1.2-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|SCons/3.1.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +SCons-4.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SCopeLoomR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SCopeLoomR.md index 91c8ace4d522..99079c433251 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SCopeLoomR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SCopeLoomR.md @@ -6,6 +6,10 @@ hide: SCopeLoomR ========== + +An R package (compatible with SCope) to create generic .loom files and extend them with other datae.g.: SCENIC regulons, Seurat clusters and markers, ... + +https://github.com/aertslab/SCopeLoomR # Available modules @@ -17,8 +21,15 @@ To start using SCopeLoomR, load one of these modules using a `module load` comma module load SCopeLoomR/0.13.0-foss-2021b-R-4.1.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SCopeLoomR/0.13.0-foss-2021b-R-4.1.2|x|x|x|x|x|x| + + +### SCopeLoomR/0.13.0-foss-2021b-R-4.1.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SCopeLoomR/0.13.0-foss-2021b-R-4.1.2|x|x|x|x|x|x|x|x| +rlist-0.4.6.2, SCopeLoomR-0.13.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SDL2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SDL2.md index d3f4d4ca09e7..770fe10ff06a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SDL2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SDL2.md @@ -6,6 +6,10 @@ hide: SDL2 ==== + +SDL: Simple DirectMedia Layer, a cross-platform multimedia library + +https://www.libsdl.org/ # Available modules @@ -14,13 +18,15 @@ The overview below shows which SDL2 installations are available per HPC-UGent Ti To start using SDL2, load one of these modules using a `module load` command like: ```shell -module load SDL2/2.0.20-GCCcore-11.2.0 +module load SDL2/2.28.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SDL2/2.0.20-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|SDL2/2.0.14-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|SDL2/2.0.14-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SDL2/2.28.2-GCCcore-12.3.0|x|x|x|x|x|x| +|SDL2/2.26.3-GCCcore-12.2.0|x|x|x|x|x|x| +|SDL2/2.0.20-GCCcore-11.2.0|x|x|x|x|x|x| +|SDL2/2.0.14-GCCcore-10.3.0|-|x|x|-|x|x| +|SDL2/2.0.14-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SDSL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SDSL.md index 55658ca87789..1aa64c7ce249 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SDSL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SDSL.md @@ -6,6 +6,10 @@ hide: SDSL ==== + +The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. + +https://github.com/simongog/sdsl-lite # Available modules @@ -17,8 +21,8 @@ To start using SDSL, load one of these modules using a `module load` command lik module load SDSL/2.1.1-20191211-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SDSL/2.1.1-20191211-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SDSL/2.1.1-20191211-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SEACells.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SEACells.md new file mode 100644 index 000000000000..246e5395f95c --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SEACells.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +SEACells +======== + + +SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data + +https://github.com/dpeerlab/SEACells +# Available modules + + +The overview below shows which SEACells installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using SEACells, load one of these modules using a `module load` command like: + +```shell +module load SEACells/20230731-foss-2021a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SEACells/20230731-foss-2021a|x|x|x|x|x|x| + + +### SEACells/20230731-foss-2021a + +This is a list of extensions included in the module: + +fcsparser-0.2.3, ncls-0.0.67, palantir-1.2, PhenoGraph-1.5.7, progressbar2-4.2.0, pygam-0.8.0, pyranges-0.0.110, pyrle-0.0.33, python-utils-3.7.0, SEACells-20230731, sorted-nearest-0.0.32, typing-extensions-4.7.1, tzlocal-5.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SECAPR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SECAPR.md index 24dc9a917f43..04e451614565 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SECAPR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SECAPR.md @@ -6,6 +6,10 @@ hide: SECAPR ====== + +SECAPR is a bioinformatics pipeline for the rapid anduser-friendly processing of targeted enriched Illumina sequences, fromraw reads to alignments + +https://github.com/AntonelliLab/seqcap_processor # Available modules @@ -17,8 +21,15 @@ To start using SECAPR, load one of these modules using a `module load` command l module load SECAPR/1.1.15-foss-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SECAPR/1.1.15-foss-2019b-Python-2.7.16|-|x|x|-|x|x| + + +### SECAPR/1.1.15-foss-2019b-Python-2.7.16 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SECAPR/1.1.15-foss-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +cogent-1.9, SECAPR-1.1.15 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SELFIES.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SELFIES.md index 95af8776c9d6..2cf011ae3907 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SELFIES.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SELFIES.md @@ -6,6 +6,10 @@ hide: SELFIES ======= + +Robust representation of semantically constrained graphs, in particular for molecules in chemistry + +https://github.com/aspuru-guzik-group/selfies # Available modules @@ -17,8 +21,8 @@ To start using SELFIES, load one of these modules using a `module load` command module load SELFIES/2.1.1-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SELFIES/2.1.1-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SELFIES/2.1.1-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SEPP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SEPP.md index 8ba3117558fd..2f52b6da994a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SEPP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SEPP.md @@ -6,6 +6,10 @@ hide: SEPP ==== + +SATe-enabled Phylogenetic Placement - addresses the problem of phylogeneticplacement of short reads into reference alignments and trees. + +https://github.com/smirarab/sepp # Available modules @@ -17,11 +21,11 @@ To start using SEPP, load one of these modules using a `module load` command lik module load SEPP/4.5.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SEPP/4.5.1-foss-2022a|x|x|x|x|x|x|x|x| -|SEPP/4.5.1-foss-2021b|x|x|x|-|x|x|x|x| -|SEPP/4.4.0-foss-2020b|-|x|x|x|x|x|x|x| -|SEPP/4.3.10-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SEPP/4.5.1-foss-2022a|x|x|x|x|x|x| +|SEPP/4.5.1-foss-2021b|x|x|x|-|x|x| +|SEPP/4.4.0-foss-2020b|-|x|x|x|x|x| +|SEPP/4.3.10-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SHAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SHAP.md index e15a0e0af4cb..b69be219d67c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SHAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SHAP.md @@ -6,6 +6,10 @@ hide: SHAP ==== + +SHAP (SHapley Additive exPlanations) is a game theoretic approach to explain the output of any machine learning model. It connects optimal credit allocation with local explanations using the classic Shapley values from game theory and their related extensions. + +https://github.com/slundberg/shap # Available modules @@ -14,11 +18,25 @@ The overview below shows which SHAP installations are available per HPC-UGent Ti To start using SHAP, load one of these modules using a `module load` command like: ```shell -module load SHAP/0.41.0-foss-2022a +module load SHAP/0.42.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SHAP/0.42.1-foss-2019b-Python-3.7.4|x|x|x|-|x|x| +|SHAP/0.41.0-foss-2022a|x|x|x|x|x|x| + + +### SHAP/0.42.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cloudpickle-2.2.1, setuptools-67.8.0, SHAP-0.42.1, slicer-0.0.7 + +### SHAP/0.41.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SHAP/0.41.0-foss-2022a|x|x|x|x|x|x|x|x| +cloudpickle-2.2.1, SHAP-0.41.0, slicer-0.0.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO++.md index 0f150134f1a4..3320b8835e56 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO++.md @@ -6,6 +6,10 @@ hide: SISSO++ ======= + +C++ implementation of SISSO with built in Python bindings for an efficient python interface + +https://gitlab.com/sissopp_developers/sissopp # Available modules @@ -17,8 +21,8 @@ To start using SISSO++, load one of these modules using a `module load` command module load SISSO++/1.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SISSO++/1.1-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SISSO++/1.1-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO.md index b52da4d28830..1913de39f05e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SISSO.md @@ -6,6 +6,10 @@ hide: SISSO ===== + +A data-driven method combining symbolic regression and compressed sensing toward accurate & interpretable models. + +https://github.com/rouyang2017/SISSO # Available modules @@ -17,9 +21,9 @@ To start using SISSO, load one of these modules using a `module load` command li module load SISSO/3.1-20220324-iimpi-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SISSO/3.1-20220324-iimpi-2021b|x|x|x|-|x|x|x|x| -|SISSO/3.0.2-iimpi-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SISSO/3.1-20220324-iimpi-2021b|x|x|x|-|x|x| +|SISSO/3.0.2-iimpi-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SKESA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SKESA.md index 61a1576a03e8..3eda12c7cdb7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SKESA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SKESA.md @@ -6,6 +6,10 @@ hide: SKESA ===== + +SKESA is a de-novo sequence read assembler for cultured single isolate genomes based on DeBruijn graphs. + +https://github.com/ncbi/SKESA # Available modules @@ -17,8 +21,8 @@ To start using SKESA, load one of these modules using a `module load` command li module load SKESA/2.4.0-gompi-2021b_saute.1.3.0_1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SKESA/2.4.0-gompi-2021b_saute.1.3.0_1|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SKESA/2.4.0-gompi-2021b_saute.1.3.0_1|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SLATEC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SLATEC.md index e416330cfee0..f0d2db23a877 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SLATEC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SLATEC.md @@ -6,6 +6,10 @@ hide: SLATEC ====== + +SLATEC Common Mathematical Library, a comprehensive software library containing over 1400 general purpose mathematical and statistical routines written in Fortran 77. + +https://www.netlib.org/slatec/ # Available modules @@ -17,8 +21,8 @@ To start using SLATEC, load one of these modules using a `module load` command l module load SLATEC/4.1-GCC-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SLATEC/4.1-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SLATEC/4.1-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SLEPc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SLEPc.md index cc889a9a5d33..2be6950deb1c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SLEPc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SLEPc.md @@ -6,6 +6,10 @@ hide: SLEPc ===== + +SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems. + +https://slepc.upv.es/ # Available modules @@ -17,13 +21,13 @@ To start using SLEPc, load one of these modules using a `module load` command li module load SLEPc/3.18.2-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SLEPc/3.18.2-intel-2021b|x|x|x|x|x|x|x|x| -|SLEPc/3.17.2-foss-2022a|x|x|x|-|x|x|x|x| -|SLEPc/3.15.1-foss-2021a|-|x|x|-|x|x|x|x| -|SLEPc/3.12.2-intel-2019b-Python-3.7.4|-|-|x|-|x|-|-|-| -|SLEPc/3.12.2-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| -|SLEPc/3.12.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SLEPc/3.18.2-intel-2021b|x|x|x|x|x|x| +|SLEPc/3.17.2-foss-2022a|x|x|x|x|x|x| +|SLEPc/3.15.1-foss-2021a|-|x|x|-|x|x| +|SLEPc/3.12.2-intel-2019b-Python-3.7.4|-|-|x|-|x|-| +|SLEPc/3.12.2-intel-2019b-Python-2.7.16|-|x|x|-|x|x| +|SLEPc/3.12.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SLiM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SLiM.md index e27fb7207fee..fde5a8f4412b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SLiM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SLiM.md @@ -6,6 +6,10 @@ hide: SLiM ==== + +SLiM is an evolutionary simulation framework that combines a powerful engine for population genetic simulations with the capability of modeling arbitrarily complex evolutionary scenarios. + +https://messerlab.org/slim # Available modules @@ -17,8 +21,8 @@ To start using SLiM, load one of these modules using a `module load` command lik module load SLiM/3.4-GCC-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SLiM/3.4-GCC-9.3.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SLiM/3.4-GCC-9.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SMAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SMAP.md index 5e3d036615e3..ebca37825409 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SMAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SMAP.md @@ -6,6 +6,10 @@ hide: SMAP ==== + +SMAP is an analysis tool for stack-based NGS read mapping + +https://ngs-smap.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using SMAP, load one of these modules using a `module load` command lik module load SMAP/4.6.5-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SMAP/4.6.5-foss-2022a|x|x|x|x|x|x| + + +### SMAP/4.6.5-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SMAP/4.6.5-foss-2022a|x|x|x|x|x|x|x|x| +colorlog-6.7.0, cutadapt-4.1, dnaio-0.10.0, gffpandas-1.2.0, isal-1.1.0, ngs-smap-4.6.5, primer3-py-1.2.0, setuptools-67.6.1, smap-effect-prediction-0.1.2, smap-haplotype-window-1.8.1, xopen-1.7.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SMC++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SMC++.md index d1a053cbff82..3fecffbf1b9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SMC++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SMC++.md @@ -6,6 +6,10 @@ hide: SMC++ ===== + +SMC++ is a program for estimating the size history of populations from whole genome sequence data. + +https://github.com/popgenmethods/smcpp # Available modules @@ -17,8 +21,15 @@ To start using SMC++, load one of these modules using a `module load` command li module load SMC++/1.15.4-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SMC++/1.15.4-foss-2022a|x|x|x|-|x|x| + + +### SMC++/1.15.4-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SMC++/1.15.4-foss-2022a|x|x|x|-|x|x|x|x| +SMC++-1.15.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SMV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SMV.md index 3f94607f411e..453315151176 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SMV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SMV.md @@ -6,6 +6,10 @@ hide: SMV === + +Smokeview is a visualization program that displays output of FDS and CFAST simulations. + +https://github.com/firemodels/smv # Available modules @@ -17,8 +21,8 @@ To start using SMV, load one of these modules using a `module load` command like module load SMV/6.7.17-iccifort-2020.4.304 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SMV/6.7.17-iccifort-2020.4.304|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SMV/6.7.17-iccifort-2020.4.304|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA-python.md new file mode 100644 index 000000000000..892a15282150 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA-python.md @@ -0,0 +1,29 @@ +--- +hide: + - toc +--- + +SNAP-ESA-python +=============== + + +Python interface to the Sentinel Application Platform (SNAP) API + +https://step.esa.int/main/toolboxes/snap/ +# Available modules + + +The overview below shows which SNAP-ESA-python installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using SNAP-ESA-python, load one of these modules using a `module load` command like: + +```shell +module load SNAP-ESA-python/9.0.0-GCCcore-11.2.0-Java-11-Python-2.7.18 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SNAP-ESA-python/9.0.0-GCCcore-11.2.0-Java-11-Python-2.7.18|x|x|x|x|x|-| +|SNAP-ESA-python/9.0.0-GCCcore-11.2.0-Java-1.8-Python-2.7.18|x|x|x|x|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA.md new file mode 100644 index 000000000000..29865201c243 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP-ESA.md @@ -0,0 +1,29 @@ +--- +hide: + - toc +--- + +SNAP-ESA +======== + + +The Sentinel Application Platform (SNAP) is a common architecture for allSentinel Toolboxes being jointly developed by Brockmann Consult, SkyWatch andC-S.The SNAP architecture is ideal for Earth Observation processing and analysisdue to the following technological innovations: Extensibility, Portability,Modular Rich Client Platform, Generic EO Data Abstraction, Tiled MemoryManagement, and a Graph Processing Framework. + +https://step.esa.int/main/toolboxes/snap/ +# Available modules + + +The overview below shows which SNAP-ESA installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using SNAP-ESA, load one of these modules using a `module load` command like: + +```shell +module load SNAP-ESA/9.0.0-Java-11 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SNAP-ESA/9.0.0-Java-11|x|x|x|x|x|x| +|SNAP-ESA/9.0.0-Java-1.8|x|x|x|x|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP.md index 812f5f31dfb9..d2fa11381468 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SNAP.md @@ -6,6 +6,10 @@ hide: SNAP ==== + +Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data + +https://www.microsoft.com/en-us/research/project/snap # Available modules @@ -17,9 +21,9 @@ To start using SNAP, load one of these modules using a `module load` command lik module load SNAP/2.0.1-GCC-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SNAP/2.0.1-GCC-12.2.0|x|x|x|x|x|x|x|x| -|SNAP/2.0.1-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SNAP/2.0.1-GCC-12.2.0|x|x|x|x|x|x| +|SNAP/2.0.1-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SOAPdenovo-Trans.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SOAPdenovo-Trans.md new file mode 100644 index 000000000000..d8c2fec8b2a7 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SOAPdenovo-Trans.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +SOAPdenovo-Trans +================ + + +SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework,adapt to alternative splicing and different expression level among transcripts. + +http://soap.genomics.org.cn/SOAPdenovo-Trans.html +# Available modules + + +The overview below shows which SOAPdenovo-Trans installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using SOAPdenovo-Trans, load one of these modules using a `module load` command like: + +```shell +module load SOAPdenovo-Trans/1.0.5-GCC-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SOAPdenovo-Trans/1.0.5-GCC-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SPAdes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SPAdes.md index 73d420484c04..a6e8e86c50bd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SPAdes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SPAdes.md @@ -6,6 +6,10 @@ hide: SPAdes ====== + +Genome assembler for single-cell and isolates data sets + +https://cab.spbu.ru/software/spades/ # Available modules @@ -17,13 +21,14 @@ To start using SPAdes, load one of these modules using a `module load` command l module load SPAdes/3.15.5-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SPAdes/3.15.5-GCC-11.3.0|x|x|x|x|x|x|x|x| -|SPAdes/3.15.4-GCC-12.2.0|x|x|x|x|x|x|x|x| -|SPAdes/3.15.3-GCC-11.2.0|x|x|x|-|x|x|x|x| -|SPAdes/3.15.2-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x|x|x| -|SPAdes/3.15.2-GCC-10.2.0|-|x|x|x|x|x|x|x| -|SPAdes/3.14.1-GCC-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SPAdes/3.15.5-GCC-11.3.0|x|x|x|x|x|x| +|SPAdes/3.15.4-GCC-12.3.0|x|x|x|x|x|x| +|SPAdes/3.15.4-GCC-12.2.0|x|x|x|x|x|x| +|SPAdes/3.15.3-GCC-11.2.0|x|x|x|-|x|x| +|SPAdes/3.15.2-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x| +|SPAdes/3.15.2-GCC-10.2.0|-|x|x|x|x|x| +|SPAdes/3.14.1-GCC-9.3.0-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SPM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SPM.md index 41bc4a460479..baf0eab2c599 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SPM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SPM.md @@ -6,6 +6,10 @@ hide: SPM === + +SPM (Statistical Parametric Mapping) refers to the construction and assessment of spatially extended statistical processes used to test hypo- theses about functional imaging data. These ideas have been instantiated in software that is called SPM. The SPM software package has been designed for the analysis of brain imaging data sequences. The sequences can be a series of images from different cohorts, or time-series from the same subject. The current release is designed for the analysis of fMRI, PET, SPECT, EEG and MEG. + +https://www.fil.ion.ucl.ac.uk/spm # Available modules @@ -17,8 +21,8 @@ To start using SPM, load one of these modules using a `module load` command like module load SPM/12.5_r7771-MATLAB-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SPM/12.5_r7771-MATLAB-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SPM/12.5_r7771-MATLAB-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SPOTPY.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SPOTPY.md index 34eea5761730..63c2938c9ddb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SPOTPY.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SPOTPY.md @@ -6,6 +6,10 @@ hide: SPOTPY ====== + +SPOTPY is a Python framework that enables the use of Computational optimization techniques forcalibration, uncertainty and sensitivity analysis techniques of almost every (environmental-) model. + +https://spotpy.readthedocs.io # Available modules @@ -17,8 +21,8 @@ To start using SPOTPY, load one of these modules using a `module load` command l module load SPOTPY/1.5.14-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SPOTPY/1.5.14-intel-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SPOTPY/1.5.14-intel-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SQLite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SQLite.md index 6243bb2ed424..7f26aecaef35 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SQLite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SQLite.md @@ -6,6 +6,10 @@ hide: SQLite ====== + +SQLite: SQL Database Engine in a C Library + +https://www.sqlite.org/ # Available modules @@ -14,19 +18,20 @@ The overview below shows which SQLite installations are available per HPC-UGent To start using SQLite, load one of these modules using a `module load` command like: ```shell -module load SQLite/3.42.0-GCCcore-12.3.0 +module load SQLite/3.43.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SQLite/3.42.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|SQLite/3.39.4-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|SQLite/3.38.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|SQLite/3.36-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|SQLite/3.35.4-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|SQLite/3.33.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|SQLite/3.31.1-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|SQLite/3.29.0-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|SQLite/3.27.2-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SQLite/3.43.1-GCCcore-13.2.0|x|x|x|x|x|x| +|SQLite/3.42.0-GCCcore-12.3.0|x|x|x|x|x|x| +|SQLite/3.39.4-GCCcore-12.2.0|x|x|x|x|x|x| +|SQLite/3.38.3-GCCcore-11.3.0|x|x|x|x|x|x| +|SQLite/3.36-GCCcore-11.2.0|x|x|x|x|x|x| +|SQLite/3.35.4-GCCcore-10.3.0|x|x|x|x|x|x| +|SQLite/3.33.0-GCCcore-10.2.0|x|x|x|x|x|x| +|SQLite/3.31.1-GCCcore-9.3.0|x|x|x|x|x|x| +|SQLite/3.29.0-GCCcore-8.3.0|x|x|x|x|x|x| +|SQLite/3.27.2-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SRA-Toolkit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SRA-Toolkit.md index 182dd735895d..013485b1a5b7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SRA-Toolkit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SRA-Toolkit.md @@ -6,6 +6,10 @@ hide: SRA-Toolkit =========== + +The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format + +https://github.com/ncbi/sra-tools # Available modules @@ -17,14 +21,14 @@ To start using SRA-Toolkit, load one of these modules using a `module load` comm module load SRA-Toolkit/3.0.3-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SRA-Toolkit/3.0.3-gompi-2022a|x|x|x|x|x|x|x|x| -|SRA-Toolkit/3.0.0-gompi-2021b|x|x|x|x|x|x|x|x| -|SRA-Toolkit/3.0.0-centos_linux64|x|x|x|-|x|x|x|x| -|SRA-Toolkit/2.10.9-gompi-2020b|-|x|x|-|x|x|x|x| -|SRA-Toolkit/2.10.8-gompi-2020a|-|x|x|-|x|x|x|x| -|SRA-Toolkit/2.10.4-gompi-2019b|-|x|x|-|x|x|-|x| -|SRA-Toolkit/2.9.6-1-centos_linux64|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SRA-Toolkit/3.0.3-gompi-2022a|x|x|x|x|x|x| +|SRA-Toolkit/3.0.0-gompi-2021b|x|x|x|x|x|x| +|SRA-Toolkit/3.0.0-centos_linux64|x|x|x|-|x|x| +|SRA-Toolkit/2.10.9-gompi-2020b|-|x|x|-|x|x| +|SRA-Toolkit/2.10.8-gompi-2020a|-|x|x|-|x|x| +|SRA-Toolkit/2.10.4-gompi-2019b|-|x|x|-|x|x| +|SRA-Toolkit/2.9.6-1-centos_linux64|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SRPRISM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SRPRISM.md index a2588113bb95..5d9f40450447 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SRPRISM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SRPRISM.md @@ -6,6 +6,10 @@ hide: SRPRISM ======= + +Single Read Paired Read Indel Substitution Minimizer + +https://github.com/ncbi/SRPRISM # Available modules @@ -17,8 +21,8 @@ To start using SRPRISM, load one of these modules using a `module load` command module load SRPRISM/3.1.2-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SRPRISM/3.1.2-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SRPRISM/3.1.2-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SRST2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SRST2.md index f8636d088fbe..4cf7b1276e27 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SRST2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SRST2.md @@ -6,6 +6,10 @@ hide: SRST2 ===== + +Short Read Sequence Typing for Bacterial Pathogens + +https://katholt.github.io/srst2 # Available modules @@ -17,8 +21,8 @@ To start using SRST2, load one of these modules using a `module load` command li module load SRST2/0.2.0-20210620-foss-2020b-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SRST2/0.2.0-20210620-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SRST2/0.2.0-20210620-foss-2020b-Python-2.7.18|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SSPACE_Basic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SSPACE_Basic.md index 2e84c8492f45..a4cd1fd48d9f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SSPACE_Basic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SSPACE_Basic.md @@ -6,6 +6,10 @@ hide: SSPACE_Basic ============ + +SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension + +https://github.com/nsoranzo/sspace_basic # Available modules @@ -17,8 +21,8 @@ To start using SSPACE_Basic, load one of these modules using a `module load` com module load SSPACE_Basic/2.1.1-GCC-10.2.0-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SSPACE_Basic/2.1.1-GCC-10.2.0-Python-2.7.18|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SSPACE_Basic/2.1.1-GCC-10.2.0-Python-2.7.18|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SSW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SSW.md index 24c1919b9c34..864a4152e5e5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SSW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SSW.md @@ -6,6 +6,10 @@ hide: SSW === + +SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. We also provide a software that can do protein and genome alignment directly. Current version of our implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically. + +https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library # Available modules @@ -17,8 +21,8 @@ To start using SSW, load one of these modules using a `module load` command like module load SSW/1.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SSW/1.1-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SSW/1.1-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/STACEY.md b/mkdocs/docs/HPC/only/gent/available_software/detail/STACEY.md index 03b29d583f31..c462ec7c31ac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/STACEY.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/STACEY.md @@ -6,6 +6,10 @@ hide: STACEY ====== + +The BEAST2 package STACEY can be used for species delimitation and species tree estimation,based on the multispecies coalescent model. + +http://www.indriid.com/software.html # Available modules @@ -17,8 +21,8 @@ To start using STACEY, load one of these modules using a `module load` command l module load STACEY/1.2.5-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|STACEY/1.2.5-GCC-10.2.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|STACEY/1.2.5-GCC-10.2.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/STAR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/STAR.md index 908641ec807f..57d6f8081610 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/STAR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/STAR.md @@ -6,6 +6,10 @@ hide: STAR ==== + +STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays. + +https://github.com/alexdobin/STAR # Available modules @@ -14,16 +18,17 @@ The overview below shows which STAR installations are available per HPC-UGent Ti To start using STAR, load one of these modules using a `module load` command like: ```shell -module load STAR/2.7.10b-GCC-11.3.0 +module load STAR/2.7.11a-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|STAR/2.7.10b-GCC-11.3.0|x|x|x|x|x|x|x|x| -|STAR/2.7.9a-GCC-11.2.0|x|x|x|x|x|x|x|x| -|STAR/2.7.6a-GCC-10.2.0|-|x|x|x|x|x|x|x| -|STAR/2.7.4a-GCC-9.3.0|-|x|x|-|x|-|x|-| -|STAR/2.7.3a-GCC-8.3.0|-|x|x|-|x|-|-|-| -|STAR/2.7.2b-GCC-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|STAR/2.7.11a-GCC-12.3.0|x|x|x|x|x|x| +|STAR/2.7.10b-GCC-11.3.0|x|x|x|x|x|x| +|STAR/2.7.9a-GCC-11.2.0|x|x|x|x|x|x| +|STAR/2.7.6a-GCC-10.2.0|-|x|x|x|x|x| +|STAR/2.7.4a-GCC-9.3.0|-|x|x|-|x|-| +|STAR/2.7.3a-GCC-8.3.0|-|x|x|-|x|-| +|STAR/2.7.2b-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/STREAM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/STREAM.md index f9d325e68a7c..32a949526569 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/STREAM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/STREAM.md @@ -6,6 +6,10 @@ hide: STREAM ====== + +The STREAM benchmark is a simple synthetic benchmark program that measures sustainable memory bandwidth (in MB/s) and the corresponding computation rate for simple vector kernels. + +https://www.cs.virginia.edu/stream/ # Available modules @@ -17,8 +21,8 @@ To start using STREAM, load one of these modules using a `module load` command l module load STREAM/5.10-GCC-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|STREAM/5.10-GCC-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|STREAM/5.10-GCC-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/STRique.md b/mkdocs/docs/HPC/only/gent/available_software/detail/STRique.md index 6783e54e64a4..3b9f361da07b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/STRique.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/STRique.md @@ -6,6 +6,10 @@ hide: STRique ======= + +STRique is a python package to analyze repeat expansion andmethylation states of short tandem repeats (STR) in Oxford Nanopore Technology(ONT) long read sequencing data. + +https://github.com/giesselmann/STRique # Available modules @@ -17,8 +21,15 @@ To start using STRique, load one of these modules using a `module load` command module load STRique/0.4.2-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|STRique/0.4.2-foss-2021b|x|x|x|-|x|x| + + +### STRique/0.4.2-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|STRique/0.4.2-foss-2021b|x|x|x|-|x|x|x|x| +ont-fast5-api-4.0.0, pomegranate-0.10.0, progressbar33-2.4, STRique-0.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SUNDIALS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SUNDIALS.md index 31f93771bd0d..0a043113b9a3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SUNDIALS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SUNDIALS.md @@ -6,6 +6,10 @@ hide: SUNDIALS ======== + +SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers + +https://computation.llnl.gov/projects/sundials # Available modules @@ -14,16 +18,17 @@ The overview below shows which SUNDIALS installations are available per HPC-UGen To start using SUNDIALS, load one of these modules using a `module load` command like: ```shell -module load SUNDIALS/6.2.0-intel-2021b +module load SUNDIALS/6.6.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SUNDIALS/6.2.0-intel-2021b|x|x|x|-|x|x|x|x| -|SUNDIALS/5.7.0-intel-2020b|-|x|x|x|x|x|x|x| -|SUNDIALS/5.7.0-fosscuda-2020b|-|-|-|-|x|-|-|-| -|SUNDIALS/5.7.0-foss-2020b|-|x|x|x|x|x|x|x| -|SUNDIALS/5.1.0-intel-2019b|-|x|x|-|x|x|-|x| -|SUNDIALS/5.1.0-foss-2019b|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SUNDIALS/6.6.0-foss-2023a|x|x|x|x|x|x| +|SUNDIALS/6.2.0-intel-2021b|x|x|x|-|x|x| +|SUNDIALS/5.7.0-intel-2020b|-|x|x|x|x|x| +|SUNDIALS/5.7.0-fosscuda-2020b|-|-|-|-|x|-| +|SUNDIALS/5.7.0-foss-2020b|-|x|x|x|x|x| +|SUNDIALS/5.1.0-intel-2019b|-|x|x|-|x|x| +|SUNDIALS/5.1.0-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SUPPA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SUPPA.md new file mode 100644 index 000000000000..ca0e1fa65889 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SUPPA.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +SUPPA +===== + + +Fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions. + +https://github.com/comprna/SUPPA +# Available modules + + +The overview below shows which SUPPA installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using SUPPA, load one of these modules using a `module load` command like: + +```shell +module load SUPPA/2.3-20231005-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SUPPA/2.3-20231005-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SVIM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SVIM.md index 80935226f58f..adbac4dcb516 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SVIM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SVIM.md @@ -6,6 +6,10 @@ hide: SVIM ==== + +SVIM (pronounced swim) is a structural variant caller for third-generation sequencing reads. It is able to detect and classify the following six classes of structural variation: deletions, insertions, inversions, tandem duplications, interspersed duplications and translocations. + +https://github.com/eldariont/svim # Available modules @@ -17,8 +21,15 @@ To start using SVIM, load one of these modules using a `module load` command lik module load SVIM/2.0.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SVIM/2.0.0-foss-2022a|x|x|x|x|x|x| + + +### SVIM/2.0.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SVIM/2.0.0-foss-2022a|x|x|x|x|x|x|x|x| +SVIM-2.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SWIG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SWIG.md index 90972b2b2fec..073329fe886b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SWIG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SWIG.md @@ -6,6 +6,10 @@ hide: SWIG ==== + +SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages. + +http://www.swig.org/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which SWIG installations are available per HPC-UGent Ti To start using SWIG, load one of these modules using a `module load` command like: ```shell -module load SWIG/4.0.2-GCCcore-11.3.0 +module load SWIG/4.1.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SWIG/4.0.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|SWIG/4.0.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|SWIG/4.0.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|SWIG/4.0.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|SWIG/4.0.1-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|SWIG/4.0.1-GCCcore-8.3.0|-|x|x|-|x|x|x|x| -|SWIG/3.0.12-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SWIG/4.1.1-GCCcore-12.3.0|x|x|x|x|x|x| +|SWIG/4.0.2-GCCcore-11.3.0|x|x|x|x|x|x| +|SWIG/4.0.2-GCCcore-11.2.0|x|x|x|x|x|x| +|SWIG/4.0.2-GCCcore-10.3.0|x|x|x|x|x|x| +|SWIG/4.0.2-GCCcore-10.2.0|x|x|x|x|x|x| +|SWIG/4.0.1-GCCcore-9.3.0|x|x|x|x|x|x| +|SWIG/4.0.1-GCCcore-8.3.0|-|x|x|-|x|x| +|SWIG/3.0.12-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sabre.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sabre.md index ec155a9ef07f..a27bdefe4deb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sabre.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sabre.md @@ -6,6 +6,10 @@ hide: Sabre ===== + +Sabre is a tool that will demultiplex barcoded reads into separate files. It will work on both single-end and paired-end data in fastq format. It simply compares the provided barcodes with each read and separates the read into its appropriate barcode file, after stripping the barcode from the read (and also stripping the quality values of the barcode bases). + +https://github.com/najoshi/sabre # Available modules @@ -17,8 +21,8 @@ To start using Sabre, load one of these modules using a `module load` command li module load Sabre/2013-09-28-GCC-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Sabre/2013-09-28-GCC-12.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Sabre/2013-09-28-GCC-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sailfish.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sailfish.md index f400aef0cc17..ea79286d84b0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sailfish.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sailfish.md @@ -6,6 +6,10 @@ hide: Sailfish ======== + +Sailfish is a software tool that implements a novel, alignment-free algorithm for the estimation of isoform abundances directly from a set of reference sequences and RNA-seq reads. + +http://www.cs.cmu.edu/~ckingsf/software/sailfish/ # Available modules @@ -17,8 +21,8 @@ To start using Sailfish, load one of these modules using a `module load` command module load Sailfish/0.10.1-gompi-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Sailfish/0.10.1-gompi-2019b|-|x|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Sailfish/0.10.1-gompi-2019b|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Salmon.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Salmon.md index 313bd6861d0c..b456c1fa91c3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Salmon.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Salmon.md @@ -6,6 +6,10 @@ hide: Salmon ====== + +Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. + +https://github.com/COMBINE-lab/salmon # Available modules @@ -17,10 +21,10 @@ To start using Salmon, load one of these modules using a `module load` command l module load Salmon/1.9.0-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Salmon/1.9.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|Salmon/1.4.0-gompi-2020b|-|x|x|x|x|x|x|x| -|Salmon/1.1.0-gompi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Salmon/1.9.0-GCC-11.3.0|x|x|x|x|x|x| +|Salmon/1.4.0-gompi-2020b|-|x|x|x|x|x| +|Salmon/1.1.0-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sambamba.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sambamba.md index 9b3b9e51ffc9..8e8f9b0c61cc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sambamba.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sambamba.md @@ -6,6 +6,10 @@ hide: Sambamba ======== + +Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files. Current functionality is an important subset of samtools functionality, including view, index, sort, markdup, and depth. + +https://lomereiter.github.io/sambamba/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which Sambamba installations are available per HPC-UGen To start using Sambamba, load one of these modules using a `module load` command like: ```shell -module load Sambamba/0.8.0-GCC-10.2.0 +module load Sambamba/1.0.1-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Sambamba/0.8.0-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Sambamba/1.0.1-GCC-11.3.0|x|x|x|x|x|x| +|Sambamba/0.8.0-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Satsuma2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Satsuma2.md index 939483a7aede..cd3f9b322e91 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Satsuma2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Satsuma2.md @@ -6,6 +6,10 @@ hide: Satsuma2 ======== + +Satsuma2 is an optimised version of Satsuma, a tool to reliably align large and complex DNA sequencesproviding maximum sensitivity (to find all there is to find), specificity (to only find real homology) and speed (toaccommodate the billions of base pairs in vertebrate genomes). + +https://github.com/bioinfologics/satsuma2 # Available modules @@ -17,8 +21,8 @@ To start using Satsuma2, load one of these modules using a `module load` command module load Satsuma2/20220304-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Satsuma2/20220304-GCC-11.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Satsuma2/20220304-GCC-11.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ScaFaCoS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ScaFaCoS.md index 4966fd3da8c8..7a97a92030ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ScaFaCoS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ScaFaCoS.md @@ -6,6 +6,10 @@ hide: ScaFaCoS ======== + +ScaFaCoS is a library of scalable fast coulomb solvers. + +http://www.scafacos.de/ # Available modules @@ -17,10 +21,10 @@ To start using ScaFaCoS, load one of these modules using a `module load` command module load ScaFaCoS/1.0.1-intel-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ScaFaCoS/1.0.1-intel-2020a|-|x|x|-|x|x|x|x| -|ScaFaCoS/1.0.1-foss-2021b|x|x|x|-|x|x|x|x| -|ScaFaCoS/1.0.1-foss-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ScaFaCoS/1.0.1-intel-2020a|-|x|x|-|x|x| +|ScaFaCoS/1.0.1-foss-2021b|x|x|x|-|x|x| +|ScaFaCoS/1.0.1-foss-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ScaLAPACK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ScaLAPACK.md index ba2f169760ca..e1b3c591743a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ScaLAPACK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ScaLAPACK.md @@ -6,6 +6,10 @@ hide: ScaLAPACK ========= + +The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. + +https://www.netlib.org/scalapack/ # Available modules @@ -14,21 +18,22 @@ The overview below shows which ScaLAPACK installations are available per HPC-UGe To start using ScaLAPACK, load one of these modules using a `module load` command like: ```shell -module load ScaLAPACK/2.2.0-gompi-2023a-fb +module load ScaLAPACK/2.2.0-gompi-2023b-fb ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ScaLAPACK/2.2.0-gompi-2023a-fb|x|x|x|x|x|x|x|x| -|ScaLAPACK/2.2.0-gompi-2022b-fb|x|x|x|x|x|x|x|x| -|ScaLAPACK/2.2.0-gompi-2022a-fb|x|x|x|x|x|x|x|x| -|ScaLAPACK/2.1.0-iimpi-2020b-bf|-|x|-|-|-|-|-|-| -|ScaLAPACK/2.1.0-gompic-2020b|x|-|-|-|x|-|-|-| -|ScaLAPACK/2.1.0-gompi-2021b-fb|x|x|x|x|x|x|x|x| -|ScaLAPACK/2.1.0-gompi-2021a-fb|x|x|x|x|x|x|x|x| -|ScaLAPACK/2.1.0-gompi-2020b-bf|-|x|-|-|-|-|-|-| -|ScaLAPACK/2.1.0-gompi-2020b|x|x|x|x|x|x|x|x| -|ScaLAPACK/2.1.0-gompi-2020a|-|x|x|-|x|x|x|x| -|ScaLAPACK/2.0.2-gompi-2019b|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ScaLAPACK/2.2.0-gompi-2023b-fb|x|x|x|x|x|x| +|ScaLAPACK/2.2.0-gompi-2023a-fb|x|x|x|x|x|x| +|ScaLAPACK/2.2.0-gompi-2022b-fb|x|x|x|x|x|x| +|ScaLAPACK/2.2.0-gompi-2022a-fb|x|x|x|x|x|x| +|ScaLAPACK/2.1.0-iimpi-2020b-bf|-|x|-|-|-|-| +|ScaLAPACK/2.1.0-gompic-2020b|x|-|-|-|x|-| +|ScaLAPACK/2.1.0-gompi-2021b-fb|x|x|x|x|x|x| +|ScaLAPACK/2.1.0-gompi-2021a-fb|x|x|x|x|x|x| +|ScaLAPACK/2.1.0-gompi-2020b-bf|-|x|-|-|-|-| +|ScaLAPACK/2.1.0-gompi-2020b|x|x|x|x|x|x| +|ScaLAPACK/2.1.0-gompi-2020a|-|x|x|-|x|x| +|ScaLAPACK/2.0.2-gompi-2019b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SciPy-bundle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SciPy-bundle.md index 6c6d318c5e3d..413b1ef99cd4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SciPy-bundle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SciPy-bundle.md @@ -6,6 +6,10 @@ hide: SciPy-bundle ============ + +Bundle of Python packages for scientific software + +https://python.org/ # Available modules @@ -14,34 +18,186 @@ The overview below shows which SciPy-bundle installations are available per HPC- To start using SciPy-bundle, load one of these modules using a `module load` command like: ```shell -module load SciPy-bundle/2023.07-gfbf-2023a +module load SciPy-bundle/2023.11-gfbf-2023b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SciPy-bundle/2023.07-gfbf-2023a|x|x|x|x|x|x|x|x| -|SciPy-bundle/2023.02-gfbf-2022b|x|x|x|x|x|x|x|x| -|SciPy-bundle/2022.05-intel-2022a|x|x|x|x|x|x|x|x| -|SciPy-bundle/2022.05-foss-2022a|x|x|x|x|x|x|x|x| -|SciPy-bundle/2021.10-intel-2021b|x|x|x|x|x|x|x|x| -|SciPy-bundle/2021.10-foss-2021b-Python-2.7.18|x|x|x|x|x|x|x|x| -|SciPy-bundle/2021.10-foss-2021b|x|x|x|x|x|x|x|x| -|SciPy-bundle/2021.05-intel-2021a|-|x|x|-|x|x|x|x| -|SciPy-bundle/2021.05-gomkl-2021a|x|x|x|x|x|x|x|x| -|SciPy-bundle/2021.05-foss-2021a|x|x|x|x|x|x|x|x| -|SciPy-bundle/2020.11-intelcuda-2020b|-|-|-|-|x|-|-|-| -|SciPy-bundle/2020.11-intel-2020b|-|x|x|-|x|x|x|x| -|SciPy-bundle/2020.11-fosscuda-2020b|x|-|-|-|x|-|-|-| -|SciPy-bundle/2020.11-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| -|SciPy-bundle/2020.11-foss-2020b|x|x|x|x|x|x|x|x| -|SciPy-bundle/2020.03-iomkl-2020a-Python-3.8.2|-|x|-|-|-|-|-|-| -|SciPy-bundle/2020.03-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|SciPy-bundle/2020.03-intel-2020a-Python-2.7.18|-|x|x|-|x|x|x|x| -|SciPy-bundle/2020.03-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|SciPy-bundle/2020.03-foss-2020a-Python-2.7.18|-|-|x|-|x|x|-|x| -|SciPy-bundle/2019.10-intel-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|SciPy-bundle/2019.10-intel-2019b-Python-2.7.16|-|x|x|-|x|x|x|x| -|SciPy-bundle/2019.10-foss-2019b-Python-3.7.4|x|x|x|-|x|x|x|x| -|SciPy-bundle/2019.10-foss-2019b-Python-2.7.16|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SciPy-bundle/2023.11-gfbf-2023b|x|x|x|x|x|x| +|SciPy-bundle/2023.07-gfbf-2023a|x|x|x|x|x|x| +|SciPy-bundle/2023.02-gfbf-2022b|x|x|x|x|x|x| +|SciPy-bundle/2022.05-intel-2022a|x|x|x|x|x|x| +|SciPy-bundle/2022.05-foss-2022a|x|x|x|x|x|x| +|SciPy-bundle/2021.10-intel-2021b|x|x|x|x|x|x| +|SciPy-bundle/2021.10-foss-2021b-Python-2.7.18|x|x|x|x|x|x| +|SciPy-bundle/2021.10-foss-2021b|x|x|x|x|x|x| +|SciPy-bundle/2021.05-intel-2021a|-|x|x|-|x|x| +|SciPy-bundle/2021.05-gomkl-2021a|x|x|x|x|x|x| +|SciPy-bundle/2021.05-foss-2021a|x|x|x|x|x|x| +|SciPy-bundle/2020.11-intelcuda-2020b|-|-|-|-|x|-| +|SciPy-bundle/2020.11-intel-2020b|-|x|x|-|x|x| +|SciPy-bundle/2020.11-fosscuda-2020b|x|-|-|-|x|-| +|SciPy-bundle/2020.11-foss-2020b-Python-2.7.18|-|x|x|x|x|x| +|SciPy-bundle/2020.11-foss-2020b|x|x|x|x|x|x| +|SciPy-bundle/2020.03-iomkl-2020a-Python-3.8.2|-|x|-|-|-|-| +|SciPy-bundle/2020.03-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|SciPy-bundle/2020.03-intel-2020a-Python-2.7.18|-|x|x|-|x|x| +|SciPy-bundle/2020.03-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|SciPy-bundle/2020.03-foss-2020a-Python-2.7.18|-|-|x|-|x|x| +|SciPy-bundle/2019.10-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|SciPy-bundle/2019.10-intel-2019b-Python-2.7.16|-|x|x|-|x|x| +|SciPy-bundle/2019.10-foss-2019b-Python-3.7.4|x|x|x|-|x|x| +|SciPy-bundle/2019.10-foss-2019b-Python-2.7.16|-|x|x|-|x|x| + + +### SciPy-bundle/2023.11-gfbf-2023b + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.7, deap-1.4.1, gast-0.5.4, mpmath-1.3.0, numexpr-2.8.7, numpy-1.26.2, pandas-2.1.3, ply-3.11, pythran-0.14.0, scipy-1.11.4, tzdata-2023.3, versioneer-0.29 + +### SciPy-bundle/2023.07-gfbf-2023a + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.7, deap-1.4.0, gast-0.5.4, mpmath-1.3.0, numexpr-2.8.4, numpy-1.25.1, pandas-2.0.3, ply-3.11, pythran-0.13.1, scipy-1.11.1, tzdata-2023.3, versioneer-0.29 + +### SciPy-bundle/2023.02-gfbf-2022b + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.5, deap-1.3.3, gast-0.5.3, mpmath-1.2.1, numexpr-2.8.4, numpy-1.24.2, pandas-1.5.3, ply-3.11, pythran-0.12.1, scipy-1.10.1 + +### SciPy-bundle/2022.05-intel-2022a + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.4, deap-1.3.3, gast-0.5.3, mpi4py-3.1.3, mpmath-1.2.1, numexpr-2.8.1, numpy-1.22.3, pandas-1.4.2, ply-3.11, pythran-0.11.0, scipy-1.8.1 + +### SciPy-bundle/2022.05-foss-2022a + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.4, deap-1.3.1, gast-0.5.3, mpi4py-3.1.3, mpmath-1.2.1, numexpr-2.8.1, numpy-1.22.3, pandas-1.4.2, ply-3.11, pythran-0.11.0, scipy-1.8.1 + +### SciPy-bundle/2021.10-intel-2021b + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.2, deap-1.3.1, gast-0.5.2, mpi4py-3.1.1, mpmath-1.2.1, numexpr-2.7.3, numpy-1.21.3, pandas-1.3.4, ply-3.11, pythran-0.10.0, scipy-1.7.1 + +### SciPy-bundle/2021.10-foss-2021b-Python-2.7.18 + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.2, deap-1.3.1, gast-0.5.2, mpi4py-3.1.1, mpmath-1.2.1, numexpr-2.7.3, numpy-1.16.6, pandas-0.24.2, ply-3.11, scipy-1.2.3 + +### SciPy-bundle/2021.10-foss-2021b + +This is a list of extensions included in the module: + +beniget-0.4.1, Bottleneck-1.3.2, deap-1.3.1, gast-0.5.2, mpi4py-3.1.1, mpmath-1.2.1, numexpr-2.7.3, numpy-1.21.3, pandas-1.3.4, ply-3.11, pythran-0.10.0, scipy-1.7.1 + +### SciPy-bundle/2021.05-intel-2021a + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.2.1, numexpr-2.7.3, numpy-1.20.3, pandas-1.2.4, scipy-1.6.3 + +### SciPy-bundle/2021.05-gomkl-2021a + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.2.1, numexpr-2.7.3, numpy-1.20.3, pandas-1.2.4, scipy-1.6.3 + +### SciPy-bundle/2021.05-foss-2021a + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.2.1, numexpr-2.7.3, numpy-1.20.3, pandas-1.2.4, scipy-1.6.3 + +### SciPy-bundle/2020.11-intelcuda-2020b + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4 + +### SciPy-bundle/2020.11-intel-2020b + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4 + +### SciPy-bundle/2020.11-fosscuda-2020b + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4 + +### SciPy-bundle/2020.11-foss-2020b-Python-2.7.18 + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.3, numpy-1.16.6, pandas-0.24.2, scipy-1.2.3 + +### SciPy-bundle/2020.11-foss-2020b + +This is a list of extensions included in the module: + +Bottleneck-1.3.2, deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numexpr-2.7.1, numpy-1.19.4, pandas-1.1.4, scipy-1.5.4 + +### SciPy-bundle/2020.03-iomkl-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.18.3, pandas-1.0.3, scipy-1.4.1 + +### SciPy-bundle/2020.03-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.18.3, pandas-1.0.3, scipy-1.4.1 + +### SciPy-bundle/2020.03-intel-2020a-Python-2.7.18 + +This is a list of extensions included in the module: + +deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.16.6, pandas-0.24.2, scipy-1.2.3 + +### SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.18.3, pandas-1.0.3, scipy-1.4.1 + +### SciPy-bundle/2020.03-foss-2020a-Python-2.7.18 + +This is a list of extensions included in the module: + +deap-1.3.1, mpi4py-3.0.3, mpmath-1.1.0, numpy-1.16.6, pandas-0.24.2, scipy-1.2.3 + +### SciPy-bundle/2019.10-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mpi4py-3.0.2, mpmath-1.1.0, numpy-1.17.3, pandas-0.25.3, scipy-1.3.1 + +### SciPy-bundle/2019.10-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +mpi4py-3.0.2, mpmath-1.1.0, numpy-1.16.5, pandas-0.24.2, scipy-1.2.2 + +### SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mpi4py-3.0.2, mpmath-1.1.0, numpy-1.17.3, pandas-0.25.3, scipy-1.3.1 + +### SciPy-bundle/2019.10-foss-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +mpi4py-3.0.2, mpmath-1.1.0, numpy-1.16.5, pandas-0.24.2, scipy-1.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Seaborn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Seaborn.md index c7336785ba5b..3470e81b791c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Seaborn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Seaborn.md @@ -6,6 +6,10 @@ hide: Seaborn ======= + +Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics. + +https://seaborn.pydata.org/ # Available modules @@ -14,23 +18,24 @@ The overview below shows which Seaborn installations are available per HPC-UGent To start using Seaborn, load one of these modules using a `module load` command like: ```shell -module load Seaborn/0.12.2-foss-2022b +module load Seaborn/0.13.2-gfbf-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Seaborn/0.12.2-foss-2022b|x|x|x|x|x|x|x|x| -|Seaborn/0.12.1-foss-2022a|x|x|x|x|x|x|x|x| -|Seaborn/0.11.2-foss-2021b|x|x|x|x|x|x|x|x| -|Seaborn/0.11.2-foss-2021a|x|x|x|x|x|x|x|x| -|Seaborn/0.11.1-intel-2020b|-|x|x|-|x|x|x|x| -|Seaborn/0.11.1-fosscuda-2020b|x|-|-|-|x|-|-|-| -|Seaborn/0.11.1-foss-2020b|-|x|x|x|x|x|x|x| -|Seaborn/0.10.1-intel-2020b|-|x|x|-|x|x|x|x| -|Seaborn/0.10.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|Seaborn/0.10.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|Seaborn/0.10.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|Seaborn/0.10.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|Seaborn/0.9.1-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Seaborn/0.13.2-gfbf-2023a|x|x|x|x|x|x| +|Seaborn/0.12.2-foss-2022b|x|x|x|x|x|x| +|Seaborn/0.12.1-foss-2022a|x|x|x|x|x|x| +|Seaborn/0.11.2-foss-2021b|x|x|x|x|x|x| +|Seaborn/0.11.2-foss-2021a|x|x|x|x|x|x| +|Seaborn/0.11.1-intel-2020b|-|x|x|-|x|x| +|Seaborn/0.11.1-fosscuda-2020b|x|-|-|-|x|-| +|Seaborn/0.11.1-foss-2020b|-|x|x|x|x|x| +|Seaborn/0.10.1-intel-2020b|-|x|x|-|x|x| +|Seaborn/0.10.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|Seaborn/0.10.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|Seaborn/0.10.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|Seaborn/0.10.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|Seaborn/0.9.1-foss-2020b-Python-2.7.18|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SemiBin.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SemiBin.md new file mode 100644 index 000000000000..21c43419f210 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SemiBin.md @@ -0,0 +1,42 @@ +--- +hide: + - toc +--- + +SemiBin +======= + + +SemiBin: Metagenomic Binning Using Siamese Neural Networks for short and long reads + +https://semibin.readthedocs.io +# Available modules + + +The overview below shows which SemiBin installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using SemiBin, load one of these modules using a `module load` command like: + +```shell +module load SemiBin/2.0.2-foss-2022a-CUDA-11.7.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SemiBin/2.0.2-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|SemiBin/2.0.2-foss-2022a|x|x|x|x|x|x| + + +### SemiBin/2.0.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +SemiBin-2.0.2 + +### SemiBin/2.0.2-foss-2022a + +This is a list of extensions included in the module: + +SemiBin-2.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sentence-Transformers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sentence-Transformers.md new file mode 100644 index 000000000000..72e0c9bcc8dd --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sentence-Transformers.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +Sentence-Transformers +===================== + + +Sentence Transformers provides an easy method to compute dense vector representations for sentences, paragraphs, and images + +https://github.com/UKPLab/sentence-transformers +# Available modules + + +The overview below shows which Sentence-Transformers installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Sentence-Transformers, load one of these modules using a `module load` command like: + +```shell +module load Sentence-Transformers/2.2.2-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Sentence-Transformers/2.2.2-foss-2022b|x|x|x|x|x|x| + + +### Sentence-Transformers/2.2.2-foss-2022b + +This is a list of extensions included in the module: + +sentence-transformers-2.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SentencePiece.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SentencePiece.md index 0709717509b8..44bd7384a35d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SentencePiece.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SentencePiece.md @@ -6,6 +6,10 @@ hide: SentencePiece ============= + +Unsupervised text tokenizer for Neural Network-based text generation. + +https://github.com/google/sentencepiece # Available modules @@ -14,13 +18,14 @@ The overview below shows which SentencePiece installations are available per HPC To start using SentencePiece, load one of these modules using a `module load` command like: ```shell -module load SentencePiece/0.1.97-GCC-11.3.0 +module load SentencePiece/0.1.99-GCC-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SentencePiece/0.1.97-GCC-11.3.0|x|x|x|x|x|x|x|x| -|SentencePiece/0.1.96-GCC-10.3.0|x|x|x|-|x|x|x|x| -|SentencePiece/0.1.85-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SentencePiece/0.1.99-GCC-12.2.0|x|x|x|x|x|x| +|SentencePiece/0.1.97-GCC-11.3.0|x|x|x|x|x|x| +|SentencePiece/0.1.96-GCC-10.3.0|x|x|x|-|x|x| +|SentencePiece/0.1.85-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqAn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqAn.md index 535d1b2c0dbe..9c173fb1dfad 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqAn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqAn.md @@ -6,6 +6,10 @@ hide: SeqAn ===== + +SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. + +https://github.com/seqan/seqan # Available modules @@ -17,10 +21,10 @@ To start using SeqAn, load one of these modules using a `module load` command li module load SeqAn/2.4.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SeqAn/2.4.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|SeqAn/2.4.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|SeqAn/2.4.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SeqAn/2.4.0-GCCcore-11.2.0|x|x|x|-|x|x| +|SeqAn/2.4.0-GCCcore-10.2.0|-|x|x|x|x|x| +|SeqAn/2.4.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqKit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqKit.md index 0d273b692707..1906993edd76 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqKit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqKit.md @@ -6,6 +6,10 @@ hide: SeqKit ====== + +SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation + +https://bioinf.shenwei.me/seqkit/ # Available modules @@ -17,8 +21,8 @@ To start using SeqKit, load one of these modules using a `module load` command l module load SeqKit/2.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SeqKit/2.1.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SeqKit/2.1.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqLib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqLib.md index 8b4151aabd81..a8e0bdad5583 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeqLib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeqLib.md @@ -6,6 +6,10 @@ hide: SeqLib ====== + +C++ interface to HTSlib, BWA-MEM and Fermi. + +https://github.com/walaj/SeqLib # Available modules @@ -17,8 +21,8 @@ To start using SeqLib, load one of these modules using a `module load` command l module load SeqLib/1.2.0-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SeqLib/1.2.0-GCC-10.2.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SeqLib/1.2.0-GCC-10.2.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Serf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Serf.md index e3ab88187552..f12a86d6ea20 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Serf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Serf.md @@ -6,6 +6,10 @@ hide: Serf ==== + +The serf library is a high performance C-based HTTP client library built upon the Apache Portable Runtime (APR) library + +https://serf.apache.org/ # Available modules @@ -17,8 +21,8 @@ To start using Serf, load one of these modules using a `module load` command lik module load Serf/1.3.9-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Serf/1.3.9-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Serf/1.3.9-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Seurat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Seurat.md index 4915f4dae02b..3255b7bf2881 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Seurat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Seurat.md @@ -6,6 +6,10 @@ hide: Seurat ====== + +Seurat is an R package designed for QC, analysis, and exploration of single cell RNA-seq data. + +https://satijalab.org/seurat # Available modules @@ -17,12 +21,37 @@ To start using Seurat, load one of these modules using a `module load` command l module load Seurat/4.3.0-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Seurat/4.3.0-foss-2022a-R-4.2.1|x|x|x|x|x|x| +|Seurat/4.3.0-foss-2021b-R-4.1.2|x|x|x|-|x|x| +|Seurat/4.2.0-foss-2022a-R-4.2.1|x|x|x|-|x|x| +|Seurat/4.0.1-foss-2020b-R-4.0.3|-|x|x|x|x|x| +|Seurat/3.1.5-foss-2020a-R-4.0.0|-|x|x|-|x|x| + + +### Seurat/4.3.0-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +Matrix-1.5-4, sctransform-0.3.5, Seurat-4.3.0, SeuratObject-4.1.3, sp-1.5-1, spatstat.data-3.0-0, spatstat.explore-3.0-5, spatstat.geom-3.0-3, spatstat.random-3.0-1, spatstat.sparse-3.0-0, spatstat.utils-3.0-1, uwot-0.1.14 + +### Seurat/4.3.0-foss-2021b-R-4.1.2 + +This is a list of extensions included in the module: + +Matrix-1.5-3, sctransform-0.3.5, Seurat-4.3.0, SeuratObject-4.1.3, sp-1.5-1, spatstat.data-3.0-0, spatstat.explore-3.0-5, spatstat.geom-3.0-3, spatstat.random-3.0-1, spatstat.sparse-3.0-0, spatstat.utils-3.0-1, uwot-0.1.14 + +### Seurat/4.2.0-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +Matrix-1.5-1, sctransform-0.3.5, Seurat-4.2.0, SeuratObject-4.1.2, uwot-0.1.14 + +### Seurat/4.0.1-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Seurat/4.3.0-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| -|Seurat/4.3.0-foss-2021b-R-4.1.2|x|x|x|-|x|x|x|x| -|Seurat/4.2.0-foss-2022a-R-4.2.1|x|x|x|-|x|x|x|x| -|Seurat/4.0.1-foss-2020b-R-4.0.3|-|x|x|x|x|x|x|x| -|Seurat/3.1.5-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| +Seurat-4.0.1, spatstat.core-2.0-0, spatstat.data-2.1-0, spatstat.geom-2.0-1, spatstat.sparse-2.0-0, spatstat.utils-2.1-0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratData.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratData.md index aed464b6f958..6993ebffccb4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratData.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratData.md @@ -6,6 +6,10 @@ hide: SeuratData ========== + +SeuratData is a mechanism for distributing datasets in the form of Seurat objects using R's internalpackage and data management systems. + +https://github.com/satijalab/seurat-data # Available modules @@ -17,8 +21,8 @@ To start using SeuratData, load one of these modules using a `module load` comma module load SeuratData/20210514-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SeuratData/20210514-foss-2020b-R-4.0.3|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SeuratData/20210514-foss-2020b-R-4.0.3|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratDisk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratDisk.md index 3d196b29be04..5be71b80646a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratDisk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratDisk.md @@ -6,6 +6,10 @@ hide: SeuratDisk ========== + +Interfaces for HDF5-based Single Cell File Formats + +https://github.com/mojaveazure/seurat-disk # Available modules @@ -17,8 +21,8 @@ To start using SeuratDisk, load one of these modules using a `module load` comma module load SeuratDisk/0.0.0.9020-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SeuratDisk/0.0.0.9020-foss-2022a-R-4.2.1|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SeuratDisk/0.0.0.9020-foss-2022a-R-4.2.1|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratWrappers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratWrappers.md index 57f535d22170..7d84d9282a44 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratWrappers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SeuratWrappers.md @@ -6,6 +6,10 @@ hide: SeuratWrappers ============== + +SeuratWrappers is a collection of community-provided methods and extensions for Seurat + +https://github.com/satijalab/seurat-wrappers # Available modules @@ -17,8 +21,8 @@ To start using SeuratWrappers, load one of these modules using a `module load` c module load SeuratWrappers/20210528-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SeuratWrappers/20210528-foss-2020b-R-4.0.3|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SeuratWrappers/20210528-foss-2020b-R-4.0.3|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Shapely.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Shapely.md index be2134d3ae3c..f2c49bdf0832 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Shapely.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Shapely.md @@ -6,6 +6,10 @@ hide: Shapely ======= + +Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects.It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries. + +https://github.com/Toblerity/Shapely # Available modules @@ -14,19 +18,20 @@ The overview below shows which Shapely installations are available per HPC-UGent To start using Shapely, load one of these modules using a `module load` command like: ```shell -module load Shapely/2.0.1-foss-2022b +module load Shapely/2.0.1-gfbf-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Shapely/2.0.1-foss-2022b|x|x|x|x|x|x|x|x| -|Shapely/1.8a1-iccifort-2020.4.304|-|x|x|x|x|x|x|x| -|Shapely/1.8a1-GCC-10.3.0|x|-|-|-|x|-|-|-| -|Shapely/1.8a1-GCC-10.2.0|-|x|x|x|x|x|x|x| -|Shapely/1.8.2-foss-2022a|x|x|x|x|x|x|x|x| -|Shapely/1.8.2-foss-2021b|x|x|x|x|x|x|x|x| -|Shapely/1.8.1.post1-GCC-11.2.0|x|x|x|-|x|x|x|x| -|Shapely/1.7.1-GCC-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| -|Shapely/1.7.0-iccifort-2019.5.281-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Shapely/2.0.1-gfbf-2023a|x|x|x|x|x|x| +|Shapely/2.0.1-foss-2022b|x|x|x|x|x|x| +|Shapely/1.8a1-iccifort-2020.4.304|-|x|x|x|x|x| +|Shapely/1.8a1-GCC-10.3.0|x|-|-|-|x|-| +|Shapely/1.8a1-GCC-10.2.0|-|x|x|x|x|x| +|Shapely/1.8.2-foss-2022a|x|x|x|x|x|x| +|Shapely/1.8.2-foss-2021b|x|x|x|x|x|x| +|Shapely/1.8.1.post1-GCC-11.2.0|x|x|x|-|x|x| +|Shapely/1.7.1-GCC-9.3.0-Python-3.8.2|-|x|x|-|x|x| +|Shapely/1.7.0-iccifort-2019.5.281-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Shasta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Shasta.md index 8a8e9034140b..592ebc0fd07a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Shasta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Shasta.md @@ -6,6 +6,10 @@ hide: Shasta ====== + +The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using DNA reads generatedby Oxford Nanopore flow cells as input. Computational methods used by the Shasta assembler include:Using a run-length representation of the read sequence. This makes the assembly process more resilient to errors inhomopolymer repeat counts, which are the most common type of errors in Oxford Nanopore reads. Using in some phases ofthe computation a representation of the read sequence based on markers, a fixed subset of short k-mers (k ≈ 10). + +https://github.com/chanzuckerberg/shasta # Available modules @@ -17,8 +21,8 @@ To start using Shasta, load one of these modules using a `module load` command l module load Shasta/0.8.0-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Shasta/0.8.0-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Shasta/0.8.0-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Short-Pair.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Short-Pair.md index 3834ba40c4ee..5786294d8489 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Short-Pair.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Short-Pair.md @@ -6,6 +6,10 @@ hide: Short-Pair ========== + +Sensitive Short Read Homology Search for Paired-End Reads + +https://sourceforge.net/projects/short-pair # Available modules @@ -17,8 +21,8 @@ To start using Short-Pair, load one of these modules using a `module load` comma module load Short-Pair/20170125-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Short-Pair/20170125-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Short-Pair/20170125-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SiNVICT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SiNVICT.md index 37d53956aae0..aa127b69cc3f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SiNVICT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SiNVICT.md @@ -6,6 +6,10 @@ hide: SiNVICT ======= + +SiNVICT is a tool for the detection of SNVs and indels from cfDNA/ctDNA samples obtained by ultra-deep sequencing. + +https://github.com/sfu-compbio/sinvict # Available modules @@ -17,8 +21,8 @@ To start using SiNVICT, load one of these modules using a `module load` command module load SiNVICT/1.0-20180817-GCC-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SiNVICT/1.0-20180817-GCC-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SiNVICT/1.0-20180817-GCC-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sibelia.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sibelia.md index cf59f5f79452..cf113f20d0d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sibelia.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sibelia.md @@ -6,6 +6,10 @@ hide: Sibelia ======= + +Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. + +http://bioinf.spbau.ru/en/sibelia # Available modules @@ -17,8 +21,8 @@ To start using Sibelia, load one of these modules using a `module load` command module load Sibelia/3.0.7-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Sibelia/3.0.7-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Sibelia/3.0.7-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SimNIBS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SimNIBS.md index de75ded4fd8a..62d213b64305 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SimNIBS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SimNIBS.md @@ -6,6 +6,10 @@ hide: SimNIBS ======= + +SimNIBS is a free and open source software package for the Simulation of Non-invasive Brain Stimulation. + +https://simnibs.github.io/simnibs # Available modules @@ -17,8 +21,15 @@ To start using SimNIBS, load one of these modules using a `module load` command module load SimNIBS/3.2.4-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SimNIBS/3.2.4-foss-2020b|-|x|x|x|x|x| + + +### SimNIBS/3.2.4-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SimNIBS/3.2.4-foss-2020b|-|x|x|x|x|x|x|x| +SimNIBS-3.2.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SimPEG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SimPEG.md index 839be81ec261..000dbbdd5908 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SimPEG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SimPEG.md @@ -6,6 +6,10 @@ hide: SimPEG ====== + +Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications. + +https://simpeg.xyz/ # Available modules @@ -17,10 +21,29 @@ To start using SimPEG, load one of these modules using a `module load` command l module load SimPEG/0.18.1-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SimPEG/0.18.1-intel-2021b|x|x|x|-|x|x| +|SimPEG/0.18.1-foss-2021b|x|x|x|-|x|x| +|SimPEG/0.14.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### SimPEG/0.18.1-intel-2021b + +This is a list of extensions included in the module: + +discretize-0.8.2, empymod-2.2.1, geoana-0.4.0, pydiso-0.0.3, pymatsolver-0.2.0, SimPEG-0.18.1, utm-0.7.0 + +### SimPEG/0.18.1-foss-2021b + +This is a list of extensions included in the module: + +discretize-0.8.2, empymod-2.2.1, geoana-0.4.0, pymatsolver-0.2.0, SimPEG-0.18.1, utm-0.7.0 + +### SimPEG/0.14.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SimPEG/0.18.1-intel-2021b|x|x|x|-|x|x|x|x| -|SimPEG/0.18.1-foss-2021b|x|x|x|-|x|x|x|x| -|SimPEG/0.14.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +discretize-0.4.12, empymod-2.0.1, geoana-0.0.6, properties-0.6.1, pymatsolver-0.1.2, pyMKL-0.0.3, SimPEG-0.14.1, utm-0.5.0, vectormath-0.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleElastix.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleElastix.md index 89905b8335cb..f89aa6fbaf12 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleElastix.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleElastix.md @@ -6,6 +6,10 @@ hide: SimpleElastix ============= + +Multi-lingual medical image registration library. + +https://simpleelastix.github.io # Available modules @@ -17,8 +21,8 @@ To start using SimpleElastix, load one of these modules using a `module load` co module load SimpleElastix/1.1.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SimpleElastix/1.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SimpleElastix/1.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleITK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleITK.md index b4e29edb2422..b236f9e35496 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleITK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SimpleITK.md @@ -6,6 +6,10 @@ hide: SimpleITK ========= + +SimpleITK is a simplified programming interface to the algorithms and data structures of the Insight Toolkit (ITK). + +http://www.simpleitk.org # Available modules @@ -17,11 +21,11 @@ To start using SimpleITK, load one of these modules using a `module load` comman module load SimpleITK/2.1.1.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SimpleITK/2.1.1.2-foss-2022a|x|x|x|x|x|x|x|x| -|SimpleITK/2.1.0-fosscuda-2020b|x|-|-|-|x|-|-|-| -|SimpleITK/2.1.0-foss-2020b|-|x|x|x|x|x|x|x| -|SimpleITK/1.2.4-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SimpleITK/2.1.1.2-foss-2022a|x|x|x|x|x|x| +|SimpleITK/2.1.0-fosscuda-2020b|x|-|-|-|x|-| +|SimpleITK/2.1.0-foss-2020b|-|x|x|x|x|x| +|SimpleITK/1.2.4-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SlamDunk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SlamDunk.md index 657e1adc35b5..2c1252200410 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SlamDunk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SlamDunk.md @@ -6,6 +6,10 @@ hide: SlamDunk ======== + +SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducibleSLAMseq data analysis. + +https://t-neumann.github.io/slamdunk # Available modules @@ -17,8 +21,8 @@ To start using SlamDunk, load one of these modules using a `module load` command module load SlamDunk/0.4.3-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SlamDunk/0.4.3-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SlamDunk/0.4.3-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Sniffles.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Sniffles.md index 6ff94409efa4..1000f698ccaf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Sniffles.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Sniffles.md @@ -6,6 +6,10 @@ hide: Sniffles ======== + +A fast structural variant caller for long-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data. + +https://github.com/fritzsedlazeck/Sniffles # Available modules @@ -17,8 +21,15 @@ To start using Sniffles, load one of these modules using a `module load` command module load Sniffles/2.0.7-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Sniffles/2.0.7-GCC-11.3.0|x|x|x|x|x|x| + + +### Sniffles/2.0.7-GCC-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Sniffles/2.0.7-GCC-11.3.0|x|x|x|x|x|x|x|x| +Sniffles-2.0.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SoX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SoX.md index c75f37b3844d..6665bc0a67fb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SoX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SoX.md @@ -6,6 +6,10 @@ hide: SoX === + +SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files to other popular audio file types and also apply sound effects and filters during the conversion. + +https://sourceforge.net/projects/sox # Available modules @@ -17,9 +21,9 @@ To start using SoX, load one of these modules using a `module load` command like module load SoX/14.4.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SoX/14.4.2-GCCcore-11.3.0|x|-|x|-|x|-|-|-| -|SoX/14.4.2-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SoX/14.4.2-GCCcore-11.3.0|x|x|x|x|x|x| +|SoX/14.4.2-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Spark.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Spark.md index 672babc99caf..dc5827f70121 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Spark.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Spark.md @@ -6,6 +6,10 @@ hide: Spark ===== + +Spark is Hadoop MapReduce done in memory + +https://spark.apache.org # Available modules @@ -14,13 +18,39 @@ The overview below shows which Spark installations are available per HPC-UGent T To start using Spark, load one of these modules using a `module load` command like: ```shell -module load Spark/3.2.1-foss-2021b +module load Spark/3.5.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Spark/3.5.0-foss-2023a|x|x|x|x|x|x| +|Spark/3.2.1-foss-2021b|x|x|x|-|x|x| +|Spark/3.1.1-fosscuda-2020b|-|-|-|-|x|-| +|Spark/2.4.5-intel-2019b-Python-3.7.4-Java-1.8|-|x|x|-|x|-| + + +### Spark/3.5.0-foss-2023a + +This is a list of extensions included in the module: + +py4j-0.10.9.7 + +### Spark/3.2.1-foss-2021b + +This is a list of extensions included in the module: + +py4j-0.10.9.5 + +### Spark/3.1.1-fosscuda-2020b + +This is a list of extensions included in the module: + +py4j-0.10.9.2 + +### Spark/2.4.5-intel-2019b-Python-3.7.4-Java-1.8 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Spark/3.2.1-foss-2021b|x|x|x|-|x|x|x|x| -|Spark/3.1.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|Spark/2.4.5-intel-2019b-Python-3.7.4-Java-1.8|-|x|x|-|x|-|-|-| +py4j-0.10.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SpatialDE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SpatialDE.md index 918c36a70fd2..2885a036c322 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SpatialDE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SpatialDE.md @@ -6,6 +6,10 @@ hide: SpatialDE ========= + +SpatialDE is a method to identify genes which significantly depend on spatial coordinates in non-linear and non-parametric ways. The intended applications are spatially resolved RNA-sequencing from e.g. Spatial Transcriptomics, or in situ gene expression measurements from e.g. SeqFISH or MERFISH. + +https://pypi.org/project/SpatialDE # Available modules @@ -17,8 +21,15 @@ To start using SpatialDE, load one of these modules using a `module load` comman module load SpatialDE/1.1.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SpatialDE/1.1.3-foss-2022a|x|x|x|x|x|x| + + +### SpatialDE/1.1.3-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SpatialDE/1.1.3-foss-2022a|x|x|x|x|x|x|x|x| +NaiveDE-1.2.0, patsy-0.5.3, SpatialDE-1.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Spyder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Spyder.md index 2588804fe7f2..4f01791f7341 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Spyder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Spyder.md @@ -6,6 +6,10 @@ hide: Spyder ====== + +Spyder is an interactive Python development environment providing MATLAB-like features in a simple and light-weighted software. + +https://github.com/spyder-ide/spyder # Available modules @@ -17,8 +21,15 @@ To start using Spyder, load one of these modules using a `module load` command l module load Spyder/4.1.5-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Spyder/4.1.5-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### Spyder/4.1.5-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Spyder/4.1.5-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +arrow-0.17.0, astroid-2.4.2, async_generator-1.10, autopep8-1.5.4, binaryornot-0.4.4, bleach-3.2.1, cloudpickle-1.6.0, cookiecutter-1.7.2, decorator-4.4.2, diff-match-patch-20200713, flake8-3.8.4, helpdev-0.7.1, isort-5.6.3, jedi-0.17.1, jeepney-0.4.3, jinja2-time-0.2.0, jupyter_client-6.1.7, jupyterlab_pygments-0.1.2, keyring-21.4.0, keyrings.alt-4.0.0, lazy-object-proxy-1.4.3, mccabe-0.6.1, nbclient-0.5.1, nest_asyncio-1.4.1, numpydoc-1.1.0, pathtools-0.1.2, poyo-0.5.0, pycodestyle-2.6.0, pydocstyle-5.1.1, pyflakes-2.2.0, pylint-2.6.0, pyrsistent-0.17.3, python-jsonrpc-server-0.4.0, python-language-server-0.35.1, python-slugify-4.0.1, pyxdg-0.26, QDarkStyle-2.8.1, QtAwesome-1.0.1, qtconsole-4.7.7, QtPy-1.9.0, rope-0.18.0, SecretStorage-3.1.2, spyder-4.1.5, spyder-kernels-1.9.4, text-unidecode-1.3, traitlets-5.0.4, typed_ast-1.4.1, ujson-4.0.1, watchdog-0.10.3, wrapt-1.12.1, wurlitzer-2.0.1, yapf-0.30.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SqueezeMeta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SqueezeMeta.md index cc698ad1ebaf..e37223eb3024 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SqueezeMeta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SqueezeMeta.md @@ -6,6 +6,10 @@ hide: SqueezeMeta =========== + +SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. + +https://github.com/jtamames/SqueezeMeta # Available modules @@ -17,8 +21,8 @@ To start using SqueezeMeta, load one of these modules using a `module load` comm module load SqueezeMeta/1.5.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SqueezeMeta/1.5.0-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SqueezeMeta/1.5.0-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Squidpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Squidpy.md index 4fa57fd9cb65..31022ad73f31 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Squidpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Squidpy.md @@ -6,6 +6,10 @@ hide: Squidpy ======= + +Squidpy is a tool for the analysis and visualization of spatial molecular data. + +https://squidpy.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using Squidpy, load one of these modules using a `module load` command module load Squidpy/1.2.2-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Squidpy/1.2.2-foss-2021b|x|x|x|-|x|x| + + +### Squidpy/1.2.2-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Squidpy/1.2.2-foss-2021b|x|x|x|-|x|x|x|x| +dask-image-2022.9.0, fsspec-2022.11.0, inflect-6.0.2, matplotlib-scalebar-0.8.1, omnipath-1.0.6, PIMS-0.6.1, pydantic-1.10.2, slicerator-1.1.0, squidpy-1.2.2, typing_extensions-4.4.0, validators-0.20.0, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Stacks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Stacks.md index 65cbc05bf1e5..95fd1b502915 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Stacks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Stacks.md @@ -6,6 +6,10 @@ hide: Stacks ====== + +Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. + +http://catchenlab.life.illinois.edu/stacks # Available modules @@ -17,9 +21,9 @@ To start using Stacks, load one of these modules using a `module load` command l module load Stacks/2.53-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Stacks/2.53-iccifort-2019.5.281|-|x|x|-|x|-|-|-| -|Stacks/2.5-iccifort-2019.5.281|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Stacks/2.53-iccifort-2019.5.281|-|x|x|-|x|-| +|Stacks/2.5-iccifort-2019.5.281|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Stata.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Stata.md index da0fbb4ed4e8..36425b8a5c88 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Stata.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Stata.md @@ -6,6 +6,10 @@ hide: Stata ===== + +Stata is a complete, integrated statistical software package that provides everything you need for data analysis, data management, and graphics. + +https://www.stata.com/ # Available modules @@ -17,8 +21,8 @@ To start using Stata, load one of these modules using a `module load` command li module load Stata/15 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Stata/15|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Stata/15|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Statistics-R.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Statistics-R.md index c6cd5c0cb510..f481a60df8dc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Statistics-R.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Statistics-R.md @@ -6,6 +6,10 @@ hide: Statistics-R ============ + +Perl interface with the R statistical program + +https://metacpan.org/pod/Statistics::R # Available modules @@ -17,8 +21,8 @@ To start using Statistics-R, load one of these modules using a `module load` com module load Statistics-R/0.34-foss-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Statistics-R/0.34-foss-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Statistics-R/0.34-foss-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/StringTie.md b/mkdocs/docs/HPC/only/gent/available_software/detail/StringTie.md index 52aa6b30c226..50a4564c8d9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/StringTie.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/StringTie.md @@ -6,6 +6,10 @@ hide: StringTie ========= + +StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts + +https://ccb.jhu.edu/software/stringtie/ # Available modules @@ -14,11 +18,13 @@ The overview below shows which StringTie installations are available per HPC-UGe To start using StringTie, load one of these modules using a `module load` command like: ```shell -module load StringTie/2.1.1-GCC-8.3.0 +module load StringTie/2.2.1-GCC-11.2.0-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|StringTie/2.1.1-GCC-8.3.0|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|StringTie/2.2.1-GCC-11.2.0-Python-2.7.18|x|x|x|x|x|x| +|StringTie/2.2.1-GCC-11.2.0|x|x|x|x|x|x| +|StringTie/2.1.1-GCC-8.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Structure.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Structure.md index fdbcf296d116..046c2c8a3d33 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Structure.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Structure.md @@ -6,6 +6,10 @@ hide: Structure ========= + +The program structure is a free software package for using multi-locus genotype data to investigate population structure. + +https://web.stanford.edu/group/pritchardlab/structure.html # Available modules @@ -17,8 +21,8 @@ To start using Structure, load one of these modules using a `module load` comman module load Structure/2.3.4-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Structure/2.3.4-iccifort-2019.5.281|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Structure/2.3.4-iccifort-2019.5.281|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Structure_threader.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Structure_threader.md index 30b6ecb6cc7c..eac870444988 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Structure_threader.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Structure_threader.md @@ -6,6 +6,10 @@ hide: Structure_threader ================== + +A program to parallelize the runs of Structure, fastStructure, MavericK and ALStructure software. + +https://github.com/StuntsPT/Structure_threader # Available modules @@ -17,8 +21,15 @@ To start using Structure_threader, load one of these modules using a `module loa module load Structure_threader/1.3.10-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Structure_threader/1.3.10-foss-2022b|x|x|x|x|x|x| + + +### Structure_threader/1.3.10-foss-2022b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Structure_threader/1.3.10-foss-2022b|x|x|x|x|x|x|x|x| +colorlover-0.3.0, Structure_threader-1.3.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SuAVE-biomat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SuAVE-biomat.md index 924ac4497f8f..ff0cd8026848 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SuAVE-biomat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SuAVE-biomat.md @@ -6,6 +6,10 @@ hide: SuAVE-biomat ============ + +Surface Assessment via Grid Evaluation (SuAVE) for Every Surface Curvature and Cavity Shape + +https://github.com/SuAVE-Software/source_v2.0 # Available modules @@ -17,8 +21,8 @@ To start using SuAVE-biomat, load one of these modules using a `module load` com module load SuAVE-biomat/2.0.0-20230815-intel-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SuAVE-biomat/2.0.0-20230815-intel-2023a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SuAVE-biomat/2.0.0-20230815-intel-2023a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md index 2372babdf03c..bf2deacc6ee8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Subread.md @@ -6,6 +6,10 @@ hide: Subread ======= + +High performance read alignment, quantification and mutation discovery + +http://subread.sourceforge.net/ # Available modules @@ -17,9 +21,9 @@ To start using Subread, load one of these modules using a `module load` command module load Subread/2.0.3-GCC-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Subread/2.0.3-GCC-9.3.0|-|x|x|-|x|-|x|-| -|Subread/2.0.0-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Subread/2.0.3-GCC-9.3.0|-|x|x|-|x|-| +|Subread/2.0.0-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Subversion.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Subversion.md index 49f3e3930d5b..42f78961fdaa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Subversion.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Subversion.md @@ -6,6 +6,10 @@ hide: Subversion ========== + +Subversion is an open source version control system. + +https://subversion.apache.org/ # Available modules @@ -17,8 +21,8 @@ To start using Subversion, load one of these modules using a `module load` comma module load Subversion/1.14.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Subversion/1.14.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Subversion/1.14.1-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SuiteSparse.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SuiteSparse.md index 5582f19bdb55..dbde28e0fe0b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SuiteSparse.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SuiteSparse.md @@ -6,6 +6,10 @@ hide: SuiteSparse =========== + +SuiteSparse is a collection of libraries manipulate sparse matrices. + +https://faculty.cse.tamu.edu/davis/suitesparse.html # Available modules @@ -14,19 +18,21 @@ The overview below shows which SuiteSparse installations are available per HPC-U To start using SuiteSparse, load one of these modules using a `module load` command like: ```shell -module load SuiteSparse/5.13.0-foss-2022a-METIS-5.1.0 +module load SuiteSparse/7.1.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SuiteSparse/5.13.0-foss-2022a-METIS-5.1.0|x|x|x|x|x|x|x|x| -|SuiteSparse/5.10.1-intel-2021b-METIS-5.1.0|x|x|x|x|x|x|x|x| -|SuiteSparse/5.10.1-foss-2021b-METIS-5.1.0|x|x|x|x|x|x|x|x| -|SuiteSparse/5.10.1-foss-2021a-METIS-5.1.0|x|x|x|x|x|x|x|x| -|SuiteSparse/5.8.1-foss-2020b-METIS-5.1.0|x|x|x|x|x|x|x|x| -|SuiteSparse/5.7.1-intel-2020a-METIS-5.1.0|-|x|x|-|x|x|x|x| -|SuiteSparse/5.7.1-foss-2020a-METIS-5.1.0|-|x|x|-|x|x|x|x| -|SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0|-|x|x|-|x|x|-|x| -|SuiteSparse/5.6.0-foss-2019b-METIS-5.1.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SuiteSparse/7.1.0-foss-2023a|x|x|x|x|x|x| +|SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0|x|x|x|x|x|x| +|SuiteSparse/5.13.0-foss-2022a-METIS-5.1.0|x|x|x|x|x|x| +|SuiteSparse/5.10.1-intel-2021b-METIS-5.1.0|x|x|x|x|x|x| +|SuiteSparse/5.10.1-foss-2021b-METIS-5.1.0|x|x|x|x|x|x| +|SuiteSparse/5.10.1-foss-2021a-METIS-5.1.0|x|x|x|x|x|x| +|SuiteSparse/5.8.1-foss-2020b-METIS-5.1.0|x|x|x|x|x|x| +|SuiteSparse/5.7.1-intel-2020a-METIS-5.1.0|-|x|x|-|x|x| +|SuiteSparse/5.7.1-foss-2020a-METIS-5.1.0|-|x|x|-|x|x| +|SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0|-|x|x|-|x|x| +|SuiteSparse/5.6.0-foss-2019b-METIS-5.1.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU.md index aa0e0a543916..c68f97ede99c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU.md @@ -6,6 +6,10 @@ hide: SuperLU ======= + +SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. + +https://crd-legacy.lbl.gov/~xiaoye/SuperLU/ # Available modules @@ -17,8 +21,8 @@ To start using SuperLU, load one of these modules using a `module load` command module load SuperLU/5.2.2-intel-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SuperLU/5.2.2-intel-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SuperLU/5.2.2-intel-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU_DIST.md b/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU_DIST.md index f5b792bd00cd..6a2ba7b7e4a9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU_DIST.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/SuperLU_DIST.md @@ -6,6 +6,10 @@ hide: SuperLU_DIST ============ + +SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. + +https://crd-legacy.lbl.gov/~xiaoye/SuperLU/ # Available modules @@ -17,9 +21,9 @@ To start using SuperLU_DIST, load one of these modules using a `module load` com module load SuperLU_DIST/8.1.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|SuperLU_DIST/8.1.0-foss-2022a|x|-|-|-|-|-|-|-| -|SuperLU_DIST/5.4.0-intel-2020a-trisolve-merge|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|SuperLU_DIST/8.1.0-foss-2022a|x|-|-|x|-|-| +|SuperLU_DIST/5.4.0-intel-2020a-trisolve-merge|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Szip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Szip.md index 593ef4e57fd0..a364037e5280 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Szip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Szip.md @@ -6,6 +6,10 @@ hide: Szip ==== + +Szip compression software, providing lossless compression of scientific data + +https://www.hdfgroup.org/doc_resource/SZIP/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which Szip installations are available per HPC-UGent Ti To start using Szip, load one of these modules using a `module load` command like: ```shell -module load Szip/2.1.1-GCCcore-12.2.0 +module load Szip/2.1.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Szip/2.1.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Szip/2.1.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Szip/2.1.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Szip/2.1.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Szip/2.1.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Szip/2.1.1-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Szip/2.1.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Szip/2.1.1-GCCcore-12.3.0|x|x|x|x|x|x| +|Szip/2.1.1-GCCcore-12.2.0|x|x|x|x|x|x| +|Szip/2.1.1-GCCcore-11.3.0|x|x|x|x|x|x| +|Szip/2.1.1-GCCcore-11.2.0|x|x|x|x|x|x| +|Szip/2.1.1-GCCcore-10.3.0|x|x|x|x|x|x| +|Szip/2.1.1-GCCcore-10.2.0|x|x|x|x|x|x| +|Szip/2.1.1-GCCcore-9.3.0|x|x|x|x|x|x| +|Szip/2.1.1-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TALON.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TALON.md index bd7cfe868eab..b174767ef4d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TALON.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TALON.md @@ -6,6 +6,10 @@ hide: TALON ===== + +TALON is a Python package for identifying and quantifying known andnovel genes/isoforms in long-read transcriptome data sets. TALON is technology-agnosticin that it works from mapped SAM files, allowing data from different sequencing platforms(i.e. PacBio and Oxford Nanopore) to be analyzed side by side. + +https://github.com/mortazavilab/TALON # Available modules @@ -17,8 +21,8 @@ To start using TALON, load one of these modules using a `module load` command li module load TALON/5.0-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TALON/5.0-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TALON/5.0-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TAMkin.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TAMkin.md index 6405a6739359..a2fcea5d7bbb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TAMkin.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TAMkin.md @@ -6,6 +6,10 @@ hide: TAMkin ====== + +TAMkin is a post-processing toolkit for normal mode analysis, thermochemistry and reaction kinetics. It uses a Hessian computation from a standard computational chemistry program as its input. + +https://molmod.github.io/tamkin/ # Available modules @@ -17,8 +21,8 @@ To start using TAMkin, load one of these modules using a `module load` command l module load TAMkin/1.2.6-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TAMkin/1.2.6-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TAMkin/1.2.6-intel-2020a-Python-3.8.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TCLAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TCLAP.md index 4972958bb735..706b22daf4a4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TCLAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TCLAP.md @@ -6,6 +6,10 @@ hide: TCLAP ===== + +TCLAP is a small, flexible library that provides a simple interface for defining and accessingcommand line arguments. It was intially inspired by the user friendly CLAP libary. + +http://tclap.sourceforge.net/ # Available modules @@ -17,8 +21,8 @@ To start using TCLAP, load one of these modules using a `module load` command li module load TCLAP/1.2.4-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TCLAP/1.2.4-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TCLAP/1.2.4-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TELEMAC-MASCARET.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TELEMAC-MASCARET.md index 6f2d07d185e6..e963b07ae3eb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TELEMAC-MASCARET.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TELEMAC-MASCARET.md @@ -6,6 +6,10 @@ hide: TELEMAC-MASCARET ================ + +TELEMAC-MASCARET is an integrated suite of solvers for use in the field of free-surface flow. Havingbeen used in the context of many studies throughout the world, it has become one of the major standards in its field. + +http://www.opentelemac.org # Available modules @@ -17,8 +21,8 @@ To start using TELEMAC-MASCARET, load one of these modules using a `module load` module load TELEMAC-MASCARET/8p3r1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TELEMAC-MASCARET/8p3r1-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TELEMAC-MASCARET/8p3r1-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TEtranscripts.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TEtranscripts.md index 8fb995307410..23aa3ff755ed 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TEtranscripts.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TEtranscripts.md @@ -6,6 +6,10 @@ hide: TEtranscripts ============= + +TEtranscripts and TEcount takes RNA-seq (and similar data) and annotates readsto both genes & transposable elements.TEtranscripts then performs differential analysis using DESeq2. + +https://github.com/mhammell-laboratory/TEtranscripts # Available modules @@ -17,8 +21,15 @@ To start using TEtranscripts, load one of these modules using a `module load` co module load TEtranscripts/2.2.0-foss-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TEtranscripts/2.2.0-foss-2020a|-|x|x|-|x|x| + + +### TEtranscripts/2.2.0-foss-2020a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TEtranscripts/2.2.0-foss-2020a|-|x|x|-|x|x|x|x| +argparse-1.4.0, TEtranscripts-2.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TOBIAS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TOBIAS.md index f499e4632c97..5433ea0fd057 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TOBIAS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TOBIAS.md @@ -6,6 +6,10 @@ hide: TOBIAS ====== + +TOBIAS is a collection of command-line bioinformatics tools forperforming footprinting analysis on ATAC-seq data, and includes: Correction ofTn5 insertion bias; Calculation of footprint scores within regulatory regions;Estimation of bound/unbound transcription factor binding sites; andVisualization of footprints within and across different conditions + +https://github.com/loosolab/TOBIAS # Available modules @@ -17,8 +21,15 @@ To start using TOBIAS, load one of these modules using a `module load` command l module load TOBIAS/0.12.12-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TOBIAS/0.12.12-foss-2021b|x|x|x|-|x|x| + + +### TOBIAS/0.12.12-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TOBIAS/0.12.12-foss-2021b|x|x|x|-|x|x|x|x| +configs-3.0.3, kneed-0.7.0, logomaker-0.8, MOODS-python-1.9.4.1, PyPDF2-1.26.0, reportlab-3.6.2, statistics-1.0.3.5, svist4get-1.2.24, TOBIAS-0.12.12, Wand-0.6.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TOPAS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TOPAS.md index 18caf34b78e1..b6ecb617aa24 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TOPAS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TOPAS.md @@ -6,6 +6,10 @@ hide: TOPAS ===== + +TOPAS wraps and extends the Geant4 Simulation Toolkit to make advanced Monte Carlo simulation of allforms of radiotherapy easier to use for medical physicists. + +https://www.topasmc.org # Available modules @@ -17,8 +21,8 @@ To start using TOPAS, load one of these modules using a `module load` command li module load TOPAS/3.9-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TOPAS/3.9-foss-2022b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TOPAS/3.9-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TRF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TRF.md index f2e3c8b5fd9d..a7642f7d2c5e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TRF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TRF.md @@ -6,6 +6,10 @@ hide: TRF === + +Tandem repeats finder: a program to analyze DNA sequences. Legacy version. + +https://tandem.bu.edu/trf/trf.html # Available modules @@ -14,13 +18,14 @@ The overview below shows which TRF installations are available per HPC-UGent Tie To start using TRF, load one of these modules using a `module load` command like: ```shell -module load TRF/4.09.1-GCCcore-11.2.0 +module load TRF/4.09.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TRF/4.09.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|TRF/4.09.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|TRF/4.09-linux64|-|-|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TRF/4.09.1-GCCcore-11.3.0|x|x|x|x|x|x| +|TRF/4.09.1-GCCcore-11.2.0|x|x|x|-|x|x| +|TRF/4.09.1-GCCcore-10.2.0|x|x|x|x|x|x| +|TRF/4.09-linux64|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TRUST4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TRUST4.md index bad7739828b3..4879c2025c64 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TRUST4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TRUST4.md @@ -6,6 +6,10 @@ hide: TRUST4 ====== + +Tcr Receptor Utilities for Solid Tissue (TRUST) is acomputational tool to analyze TCR and BCR sequences using unselected RNAsequencing data, profiled from solid tissues, including tumors. TRUST4 performsde novo assembly on V, J, C genes including the hypervariablecomplementarity-determining region 3 (CDR3) and reports consensus of BCR/TCRsequences. TRUST4 then realigns the contigs to IMGT reference gene sequences toreport the corresponding information. TRUST4 supports both single-end andpaired-end sequencing data with any read length. + +https://github.com/liulab-dfci/TRUST4 # Available modules @@ -17,8 +21,8 @@ To start using TRUST4, load one of these modules using a `module load` command l module load TRUST4/1.0.6-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TRUST4/1.0.6-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TRUST4/1.0.6-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Tcl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Tcl.md index 3f5448023416..95acf85956e2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Tcl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Tcl.md @@ -6,6 +6,10 @@ hide: Tcl === + +Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more. + +http://www.tcl.tk/ # Available modules @@ -14,19 +18,20 @@ The overview below shows which Tcl installations are available per HPC-UGent Tie To start using Tcl, load one of these modules using a `module load` command like: ```shell -module load Tcl/8.6.13-GCCcore-12.3.0 +module load Tcl/8.6.13-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Tcl/8.6.13-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Tcl/8.6.12-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Tcl/8.6.12-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Tcl/8.6.11-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Tcl/8.6.11-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Tcl/8.6.10-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Tcl/8.6.10-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Tcl/8.6.9-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|Tcl/8.6.9-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Tcl/8.6.13-GCCcore-13.2.0|x|x|x|x|x|x| +|Tcl/8.6.13-GCCcore-12.3.0|x|x|x|x|x|x| +|Tcl/8.6.12-GCCcore-12.2.0|x|x|x|x|x|x| +|Tcl/8.6.12-GCCcore-11.3.0|x|x|x|x|x|x| +|Tcl/8.6.11-GCCcore-11.2.0|x|x|x|x|x|x| +|Tcl/8.6.11-GCCcore-10.3.0|x|x|x|x|x|x| +|Tcl/8.6.10-GCCcore-10.2.0|x|x|x|x|x|x| +|Tcl/8.6.10-GCCcore-9.3.0|x|x|x|x|x|x| +|Tcl/8.6.9-GCCcore-8.3.0|x|x|x|x|x|x| +|Tcl/8.6.9-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TensorFlow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TensorFlow.md index d2bd239af045..71caefaf398e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TensorFlow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TensorFlow.md @@ -6,6 +6,10 @@ hide: TensorFlow ========== + +An open-source software library for Machine Intelligence + +https://www.tensorflow.org/ # Available modules @@ -14,28 +18,151 @@ The overview below shows which TensorFlow installations are available per HPC-UG To start using TensorFlow, load one of these modules using a `module load` command like: ```shell -module load TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0 +module load TensorFlow/2.13.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-|-|-| -|TensorFlow/2.11.0-foss-2022a|x|x|x|x|x|x|x|x| -|TensorFlow/2.8.4-foss-2021b|-|-|-|x|-|-|-|-| -|TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-|-|-| -|TensorFlow/2.7.1-foss-2021b|x|x|x|x|x|x|x|x| -|TensorFlow/2.6.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|TensorFlow/2.6.0-foss-2021a|-|x|x|-|x|x|x|x| -|TensorFlow/2.5.3-foss-2021a|x|x|x|-|x|x|x|x| -|TensorFlow/2.5.0-fosscuda-2020b|x|-|-|-|x|-|-|-| -|TensorFlow/2.5.0-foss-2020b|-|x|x|x|x|x|x|x| -|TensorFlow/2.4.1-fosscuda-2020b|x|-|-|-|x|-|-|-| -|TensorFlow/2.4.1-foss-2020b|x|x|x|x|x|x|x|x| -|TensorFlow/2.3.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|TensorFlow/2.2.3-foss-2020b|-|x|x|x|x|x|x|x| -|TensorFlow/2.2.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|TensorFlow/2.2.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|TensorFlow/2.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|TensorFlow/1.15.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TensorFlow/2.13.0-foss-2023a|x|x|x|x|x|x| +|TensorFlow/2.13.0-foss-2022b|x|x|x|x|x|x| +|TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|TensorFlow/2.11.0-foss-2022a|x|x|x|x|x|x| +|TensorFlow/2.8.4-foss-2021b|-|-|-|x|-|-| +|TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-| +|TensorFlow/2.7.1-foss-2021b|x|x|x|x|x|x| +|TensorFlow/2.6.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|TensorFlow/2.6.0-foss-2021a|x|x|x|x|x|x| +|TensorFlow/2.5.3-foss-2021a|x|x|x|-|x|x| +|TensorFlow/2.5.0-fosscuda-2020b|x|-|-|-|x|-| +|TensorFlow/2.5.0-foss-2020b|-|x|x|x|x|x| +|TensorFlow/2.4.1-fosscuda-2020b|x|-|-|-|x|-| +|TensorFlow/2.4.1-foss-2020b|x|x|x|x|x|x| +|TensorFlow/2.3.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|TensorFlow/2.2.3-foss-2020b|-|x|x|x|x|x| +|TensorFlow/2.2.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|TensorFlow/2.2.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|TensorFlow/2.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|TensorFlow/1.15.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### TensorFlow/2.13.0-foss-2023a + +This is a list of extensions included in the module: + +absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, cachetools-5.3.1, google-auth-2.22.0, google-auth-oauthlib-1.0.0, google-pasta-0.2.0, grpcio-1.57.0, gviz-api-1.10.0, keras-2.13.1, Markdown-3.4.4, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.3.0, requests-oauthlib-1.3.1, rsa-4.9, tblib-2.0.0, tensorboard-2.13.0, tensorboard-data-server-0.7.1, tensorboard-plugin-profile-2.13.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.13.0, tensorflow-estimator-2.13.0, termcolor-2.3.0, Werkzeug-2.3.7, wrapt-1.15.0 + +### TensorFlow/2.13.0-foss-2022b + +This is a list of extensions included in the module: + +absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, cachetools-5.3.1, google-auth-2.22.0, google-auth-oauthlib-1.0.0, google-pasta-0.2.0, grpcio-1.56.2, gviz-api-1.10.0, keras-2.13.1, Markdown-3.4.4, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.3.0, requests-oauthlib-1.3.1, rsa-4.9, tblib-2.0.0, tensorboard-2.13.0, tensorboard-data-server-0.7.1, tensorboard-plugin-profile-2.13.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.13.0, tensorflow-estimator-2.13.0, termcolor-2.3.0, Werkzeug-2.3.6, wrapt-1.15.0 + +### TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.2.1, gast-0.4.0, google-auth-2.16.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.51.1, gviz-api-1.10.0, keras-2.11.0, Markdown-3.4.1, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.9, tblib-1.7.0, tensorboard-2.11.1, tensorboard-data-server-0.6.1, tensorboard-plugin-profile-2.11.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.11.0, tensorflow-estimator-2.11.0, termcolor-1.1.0, Werkzeug-2.2.2, wrapt-1.14.1 + +### TensorFlow/2.11.0-foss-2022a + +This is a list of extensions included in the module: + +absl-py-1.4.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.2.1, gast-0.4.0, google-auth-2.16.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.51.1, gviz-api-1.10.0, keras-2.11.0, Markdown-3.4.1, oauthlib-3.2.2, opt-einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.9, tblib-1.7.0, tensorboard-2.11.1, tensorboard-data-server-0.6.1, tensorboard-plugin-profile-2.11.1, tensorboard-plugin-wit-1.8.1, TensorFlow-2.11.0, tensorflow-estimator-2.11.0, termcolor-1.1.0, Werkzeug-2.2.2, wrapt-1.14.1 + +### TensorFlow/2.8.4-foss-2021b + +This is a list of extensions included in the module: + +absl-py-1.0.0, astunparse-1.6.3, cachetools-5.1.0, google-auth-2.6.6, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.46.1, keras-2.8.0, Keras_Preprocessing-1.1.2, Markdown-3.3.7, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.2, pyasn1-modules-0.2.8, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_wit-1.8.1, TensorFlow-2.8.4, tensorflow_estimator-2.8.0, termcolor-1.1.0, Werkzeug-2.1.2, wrapt-1.14.1 + +### TensorFlow/2.7.1-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.0.0, dill-0.3.4, gast-0.4.0, google-auth-2.6.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.43.0, gviz-api-1.10.0, keras-2.7.0, Keras_Preprocessing-1.1.2, Markdown-3.3.6, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.0, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.1, TensorFlow-2.7.1, tensorflow_estimator-2.7.0, termcolor-1.1.0, Werkzeug-2.0.3, wrapt-1.13.3 + +### TensorFlow/2.7.1-foss-2021b + +This is a list of extensions included in the module: + +absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, beniget-0.3.0, cachetools-5.0.0, dill-0.3.4, gast-0.4.0, google-auth-2.6.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.43.0, gviz-api-1.10.0, keras-2.7.0, Keras_Preprocessing-1.1.2, Markdown-3.3.6, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.0, pyasn1-modules-0.2.8, pythran-0.9.11, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.1, TensorFlow-2.7.1, tensorflow_estimator-2.7.0, termcolor-1.1.0, Werkzeug-2.0.3, wrapt-1.13.3 + +### TensorFlow/2.6.0-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, clang-5.0, dill-0.3.3, gast-0.4.0, google-auth-1.35.0, google-auth-oauthlib-0.4.5, google-pasta-0.2.0, grpcio-1.39.0, gviz-api-1.9.0, keras-2.6.0, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.1, opt_einsum-3.3.0, portpicker-1.4.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.6.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.6.0, tensorflow_estimator-2.6.0, termcolor-1.1.0, Werkzeug-2.0.1, wrapt-1.12.1 + +### TensorFlow/2.6.0-foss-2021a + +This is a list of extensions included in the module: + +absl-py-0.13.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, clang-5.0, dill-0.3.3, gast-0.4.0, google-auth-1.35.0, google-auth-oauthlib-0.4.5, google-pasta-0.2.0, grpcio-1.39.0, gviz-api-1.9.0, keras-2.6.0, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.1, opt_einsum-3.3.0, portpicker-1.4.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.6.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.6.0, tensorflow_estimator-2.6.0, termcolor-1.1.0, Werkzeug-2.0.1, wrapt-1.12.1 + +### TensorFlow/2.5.3-foss-2021a + +This is a list of extensions included in the module: + +absl-py-0.15.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.4, dill-0.3.4, gast-0.4.0, google-auth-1.35.0, google-auth-oauthlib-0.4.6, google-pasta-0.2.0, grpcio-1.43.0, gviz-api-1.10.0, keras_nightly-2.5.0.dev2021032900, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.2.0, opt_einsum-3.3.0, portpicker-1.5.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.1, rsa-4.8, tblib-1.7.0, tensorboard-2.5.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.5.0, tensorboard_plugin_wit-1.8.1, TensorFlow-2.5.3, tensorflow_estimator-2.5.0, termcolor-1.1.0, Werkzeug-2.0.2, wrapt-1.13.3 + +### TensorFlow/2.5.0-fosscuda-2020b + +This is a list of extensions included in the module: + +absl-py-0.12.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, dill-0.3.3, gast-0.4.0, google-auth-1.30.0, google-auth-oauthlib-0.4.4, google-pasta-0.2.0, grpcio-1.34.1, gviz-api-1.9.0, keras_nightly-2.5.0.dev2021032900, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.0, opt_einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.5.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.4.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.5.0, tensorflow_estimator-2.5.0, termcolor-1.1.0, Werkzeug-2.0.0, wrapt-1.12.1 + +### TensorFlow/2.5.0-foss-2020b + +This is a list of extensions included in the module: + +absl-py-0.12.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, dill-0.3.3, gast-0.4.0, google-auth-1.30.0, google-auth-oauthlib-0.4.4, google-pasta-0.2.0, grpcio-1.34.1, gviz-api-1.9.0, keras_nightly-2.5.0.dev2021032900, Keras_Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.0, opt_einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tblib-1.7.0, tensorboard-2.5.0, tensorboard_data_server-0.6.1, tensorboard_plugin_profile-2.4.0, tensorboard_plugin_wit-1.8.0, TensorFlow-2.5.0, tensorflow_estimator-2.5.0, termcolor-1.1.0, Werkzeug-2.0.0, wrapt-1.12.1 + +### TensorFlow/2.4.1-fosscuda-2020b + +This is a list of extensions included in the module: + +absl-py-0.10.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.0, dill-0.3.3, gast-0.3.3, google-auth-1.24.0, google-auth-oauthlib-0.4.2, google-pasta-0.2.0, grpcio-1.32.0, gviz-api-1.9.0, h5py-2.10.0, Keras-Preprocessing-1.1.2, Markdown-3.3.3, oauthlib-3.1.0, opt-einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7, tblib-1.7.0, tensorboard-2.4.1, tensorboard-plugin-profile-2.4.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.4.1, tensorflow-estimator-2.4.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1 + +### TensorFlow/2.4.1-foss-2020b + +This is a list of extensions included in the module: + +absl-py-0.10.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.0, dill-0.3.3, gast-0.3.3, google-auth-1.24.0, google-auth-oauthlib-0.4.2, google-pasta-0.2.0, grpcio-1.32.0, gviz-api-1.9.0, h5py-2.10.0, Keras-Preprocessing-1.1.2, Markdown-3.3.3, oauthlib-3.1.0, opt-einsum-3.3.0, portpicker-1.3.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7, tblib-1.7.0, tensorboard-2.4.1, tensorboard-plugin-profile-2.4.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.4.1, tensorflow-estimator-2.4.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1 + +### TensorFlow/2.3.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +absl-py-0.10.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.1.1, gast-0.3.3, google-auth-1.22.1, google-auth-oauthlib-0.4.1, google-pasta-0.2.0, grpcio-1.33.1, gviz-api-1.9.0, Keras-Preprocessing-1.1.2, Markdown-3.2.2, oauthlib-3.1.0, opt-einsum-3.3.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.6, tensorboard-2.3.0, tensorboard-plugin-profile-2.3.0, tensorboard-plugin-wit-1.7.0, TensorFlow-2.3.1, tensorflow-estimator-2.3.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1 + +### TensorFlow/2.2.3-foss-2020b + +This is a list of extensions included in the module: + +absl-py-0.12.0, astor-0.8.1, astunparse-1.6.3, cachetools-4.2.2, gast-0.3.3, google-auth-1.35.0, google-auth-oauthlib-0.4.5, google-pasta-0.2.0, grpcio-1.39.0, gviz-api-1.9.0, h5py-2.10.0, Keras-Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.1, opt-einsum-3.3.0, portpicker-1.4.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tensorboard-2.2.2, tensorboard-plugin-profile-2.2.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.2.3, tensorflow-estimator-2.2.0, termcolor-1.1.0, Werkzeug-2.0.1, wrapt-1.12.1 + +### TensorFlow/2.2.2-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +absl-py-0.12.0, astunparse-1.6.3, cachetools-4.2.1, gast-0.3.3, google-auth-1.28.0, google-auth-oauthlib-0.4.4, google-pasta-0.2.0, grpcio-1.36.1, gviz-api-1.9.0, Keras-Preprocessing-1.1.2, Markdown-3.3.4, oauthlib-3.1.0, opt-einsum-3.3.0, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.7.2, tensorboard-2.2.2, tensorboard-plugin-profile-2.2.0, tensorboard-plugin-wit-1.8.0, TensorFlow-2.2.2, tensorflow-estimator-2.2.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1 + +### TensorFlow/2.2.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +absl-py-0.9.0, astunparse-1.6.3, cachetools-4.1.0, gast-0.3.3, google-auth-1.14.2, google-auth-oauthlib-0.4.1, google-pasta-0.2.0, grpcio-1.28.1, Keras-Applications-1.0.8, Keras-Preprocessing-1.1.0, Markdown-3.2.1, oauthlib-3.1.0, opt-einsum-3.2.1, protobuf-3.11.3, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.0, scipy-1.4.1, tensorboard-2.2.1, tensorboard-plugin-wit-1.6.0.post3, TensorFlow-2.2.0, tensorflow-estimator-2.2.0, termcolor-1.1.0, Werkzeug-1.0.1, wrapt-1.12.1 + +### TensorFlow/2.1.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +absl-py-0.8.1, astor-0.8.0, cachetools-3.1.1, gast-0.2.2, google-auth-1.7.1, google-auth-oauthlib-0.4.1, google-pasta-0.1.8, grpcio-1.25.0, Keras-Applications-1.0.8, Keras-Preprocessing-1.1.0, Markdown-3.1.1, oauthlib-3.1.0, opt-einsum-3.1.0, pyasn1-modules-0.2.7, requests-oauthlib-1.3.0, rsa-4.0, tensorboard-2.1.0, TensorFlow-2.1.0, tensorflow-estimator-2.1.0, termcolor-1.1.0, Werkzeug-0.16.0, wrapt-1.11.2 + +### TensorFlow/1.15.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +absl-py-0.8.1, astor-0.8.0, gast-0.2.2, google-pasta-0.1.8, grpcio-1.25.0, Keras-Applications-1.0.8, Keras-Preprocessing-1.1.0, Markdown-3.1.1, opt-einsum-3.1.0, protobuf-3.10.0, tensorboard-1.15.0, TensorFlow-1.15.0, tensorflow-estimator-1.15.1, termcolor-1.1.0, Werkzeug-0.16.0, wrapt-1.11.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Theano.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Theano.md index 9012afa647b1..96f366cdbe95 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Theano.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Theano.md @@ -6,6 +6,10 @@ hide: Theano ====== + +Theano is a Python library that allows you to define, optimize,and evaluate mathematical expressions involving multi-dimensional arrays efficiently. + +https://deeplearning.net/software/theano # Available modules @@ -17,13 +21,13 @@ To start using Theano, load one of these modules using a `module load` command l module load Theano/1.1.2-intel-2021b-PyMC ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Theano/1.1.2-intel-2021b-PyMC|x|x|x|-|x|x|x|x| -|Theano/1.1.2-intel-2020b-PyMC|-|-|x|-|x|x|x|x| -|Theano/1.1.2-fosscuda-2020b-PyMC|x|-|-|-|x|-|-|-| -|Theano/1.1.2-foss-2020b-PyMC|-|x|x|x|x|x|x|x| -|Theano/1.0.4-intel-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| -|Theano/1.0.4-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Theano/1.1.2-intel-2021b-PyMC|x|x|x|-|x|x| +|Theano/1.1.2-intel-2020b-PyMC|-|-|x|-|x|x| +|Theano/1.1.2-fosscuda-2020b-PyMC|x|-|-|-|x|-| +|Theano/1.1.2-foss-2020b-PyMC|-|x|x|x|x|x| +|Theano/1.0.4-intel-2019b-Python-3.7.4|-|-|x|-|x|x| +|Theano/1.0.4-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Tk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Tk.md index 1a0a8ca4a921..26c40d56125e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Tk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Tk.md @@ -6,6 +6,10 @@ hide: Tk == + +Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages. + +https://www.tcl.tk/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which Tk installations are available per HPC-UGent Tier To start using Tk, load one of these modules using a `module load` command like: ```shell -module load Tk/8.6.12-GCCcore-12.2.0 +module load Tk/8.6.13-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Tk/8.6.12-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Tk/8.6.12-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Tk/8.6.11-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Tk/8.6.11-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Tk/8.6.10-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Tk/8.6.10-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Tk/8.6.9-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Tk/8.6.13-GCCcore-12.3.0|x|x|x|x|x|x| +|Tk/8.6.12-GCCcore-12.2.0|x|x|x|x|x|x| +|Tk/8.6.12-GCCcore-11.3.0|x|x|x|x|x|x| +|Tk/8.6.11-GCCcore-11.2.0|x|x|x|x|x|x| +|Tk/8.6.11-GCCcore-10.3.0|x|x|x|x|x|x| +|Tk/8.6.10-GCCcore-10.2.0|x|x|x|x|x|x| +|Tk/8.6.10-GCCcore-9.3.0|x|x|x|x|x|x| +|Tk/8.6.9-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Tkinter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Tkinter.md index 99db3b90cbcc..2b061b4bbe25 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Tkinter.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Tkinter.md @@ -6,6 +6,10 @@ hide: Tkinter ======= + +Tkinter module, built with the Python buildsystem + +https://python.org/ # Available modules @@ -14,20 +18,21 @@ The overview below shows which Tkinter installations are available per HPC-UGent To start using Tkinter, load one of these modules using a `module load` command like: ```shell -module load Tkinter/3.10.8-GCCcore-12.2.0 +module load Tkinter/3.11.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Tkinter/3.10.8-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Tkinter/3.10.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Tkinter/3.9.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Tkinter/3.9.5-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Tkinter/3.8.6-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Tkinter/3.8.2-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|Tkinter/3.7.4-GCCcore-8.3.0|-|x|x|-|x|x|x|x| -|Tkinter/2.7.18-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|Tkinter/2.7.18-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Tkinter/2.7.16-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Tkinter/3.11.3-GCCcore-12.3.0|x|x|x|x|x|x| +|Tkinter/3.10.8-GCCcore-12.2.0|x|x|x|x|x|x| +|Tkinter/3.10.4-GCCcore-11.3.0|x|x|x|x|x|x| +|Tkinter/3.9.6-GCCcore-11.2.0|x|x|x|x|x|x| +|Tkinter/3.9.5-GCCcore-10.3.0|x|x|x|x|x|x| +|Tkinter/3.8.6-GCCcore-10.2.0|x|x|x|x|x|x| +|Tkinter/3.8.2-GCCcore-9.3.0|x|x|x|x|x|x| +|Tkinter/3.7.4-GCCcore-8.3.0|-|x|x|-|x|x| +|Tkinter/2.7.18-GCCcore-10.2.0|-|x|x|x|x|x| +|Tkinter/2.7.18-GCCcore-9.3.0|-|x|x|-|x|x| +|Tkinter/2.7.16-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Togl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Togl.md index 70177491fb83..0b432f73e0ab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Togl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Togl.md @@ -6,6 +6,10 @@ hide: Togl ==== + +A Tcl/Tk widget for OpenGL rendering. + +https://sourceforge.net/projects/togl/ # Available modules @@ -17,8 +21,8 @@ To start using Togl, load one of these modules using a `module load` command lik module load Togl/2.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Togl/2.0-GCCcore-11.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Togl/2.0-GCCcore-11.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Tombo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Tombo.md index d0b1a5c4ccdc..5c97f6d5b267 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Tombo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Tombo.md @@ -6,6 +6,10 @@ hide: Tombo ===== + +Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data. + +https://github.com/nanoporetech/tombo # Available modules @@ -17,8 +21,15 @@ To start using Tombo, load one of these modules using a `module load` command li module load Tombo/1.5.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Tombo/1.5.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### Tombo/1.5.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Tombo/1.5.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +mappy-2.17, ont-tombo-1.5.1, pyfaidx-0.5.8 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TopHat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TopHat.md index f7099acfee90..7f29c52c3679 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TopHat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TopHat.md @@ -6,6 +6,10 @@ hide: TopHat ====== + +TopHat is a fast splice junction mapper for RNA-Seq reads. + +http://ccb.jhu.edu/software/tophat/ # Available modules @@ -17,11 +21,12 @@ To start using TopHat, load one of these modules using a `module load` command l module load TopHat/2.1.2-iimpi-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TopHat/2.1.2-iimpi-2020a|-|x|x|-|x|x|-|x| -|TopHat/2.1.2-gompi-2020a|-|x|x|-|x|x|x|x| -|TopHat/2.1.2-GCC-11.3.0-Python-2.7.18|x|x|x|x|x|x|x|x| -|TopHat/2.1.2-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TopHat/2.1.2-iimpi-2020a|-|x|x|-|x|x| +|TopHat/2.1.2-gompi-2020a|-|x|x|-|x|x| +|TopHat/2.1.2-GCC-11.3.0-Python-2.7.18|x|x|x|x|x|x| +|TopHat/2.1.2-GCC-11.2.0-Python-2.7.18|x|x|x|x|x|x| +|TopHat/2.1.2-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TransDecoder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TransDecoder.md index a4d36d914627..edbabca8c959 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TransDecoder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TransDecoder.md @@ -6,6 +6,10 @@ hide: TransDecoder ============ + +TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. + +https://github.com/TransDecoder/TransDecoder/wiki # Available modules @@ -17,8 +21,8 @@ To start using TransDecoder, load one of these modules using a `module load` com module load TransDecoder/5.5.0-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TransDecoder/5.5.0-GCC-10.2.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TransDecoder/5.5.0-GCC-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TranscriptClean.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TranscriptClean.md index 7aefbe414ec4..3455cb354705 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TranscriptClean.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TranscriptClean.md @@ -6,6 +6,10 @@ hide: TranscriptClean =============== + +TranscriptClean is a Python program that corrects mismatches, microindels,and noncanonical splice junctions in long reads that have been mapped to the genome. + +https://github.com/mortazavilab/TranscriptClean # Available modules @@ -17,8 +21,8 @@ To start using TranscriptClean, load one of these modules using a `module load` module load TranscriptClean/2.0.2-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TranscriptClean/2.0.2-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TranscriptClean/2.0.2-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Transformers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Transformers.md index e348d3ae5501..58b037934010 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Transformers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Transformers.md @@ -6,6 +6,10 @@ hide: Transformers ============ + +State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0 + +https://github.com/huggingface/transformers # Available modules @@ -17,11 +21,36 @@ To start using Transformers, load one of these modules using a `module load` com module load Transformers/4.30.2-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Transformers/4.30.2-foss-2022b|x|x|x|x|x|x| +|Transformers/4.24.0-foss-2022a|x|x|x|x|x|x| +|Transformers/4.21.1-foss-2021b|x|x|x|-|x|x| +|Transformers/4.20.1-foss-2021a|x|x|x|-|x|x| + + +### Transformers/4.30.2-foss-2022b + +This is a list of extensions included in the module: + +%(namelower)s-4.30.2, huggingface-hub-0.15.1, regex-2023.6.3, safetensors-0.3.1 + +### Transformers/4.24.0-foss-2022a + +This is a list of extensions included in the module: + +huggingface-hub-0.10.1, regex-2022.10.31, tokenizers-0.13.2, transformers-4.24.0 + +### Transformers/4.21.1-foss-2021b + +This is a list of extensions included in the module: + +huggingface-hub-0.8.1, regex-2022.7.25, sacremoses-0.0.53, tokenizers-0.12.1, transformers-4.21.1 + +### Transformers/4.20.1-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Transformers/4.30.2-foss-2022b|x|x|x|x|x|x|x|x| -|Transformers/4.24.0-foss-2022a|x|x|x|x|x|x|x|x| -|Transformers/4.21.1-foss-2021b|x|x|x|-|x|x|x|x| -|Transformers/4.20.1-foss-2021a|x|x|x|-|x|x|x|x| +huggingface-hub-0.8.1, regex-2021.11.10, sacremoses-0.0.53, tokenizers-0.12.1, transformers-4.20.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TreeMix.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TreeMix.md index 439517f11f81..a02a68f1d6a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TreeMix.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TreeMix.md @@ -6,6 +6,10 @@ hide: TreeMix ======= + +TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations. + +http://bitbucket.org/nygcresearch/treemix # Available modules @@ -17,8 +21,8 @@ To start using TreeMix, load one of these modules using a `module load` command module load TreeMix/1.13-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TreeMix/1.13-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TreeMix/1.13-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Trilinos.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Trilinos.md index 7d2f948d6517..7977ec266c63 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Trilinos.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Trilinos.md @@ -6,6 +6,10 @@ hide: Trilinos ======== + +The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages. + +https://trilinos.org # Available modules @@ -17,8 +21,8 @@ To start using Trilinos, load one of these modules using a `module load` command module load Trilinos/12.12.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Trilinos/12.12.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Trilinos/12.12.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Trim_Galore.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Trim_Galore.md index 7e48f88dabc0..e68760ebf764 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Trim_Galore.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Trim_Galore.md @@ -6,6 +6,10 @@ hide: Trim_Galore =========== + +Trim Galore is a wrapper around Cutadapt and FastQC toconsistently apply adapter and quality trimming to FastQ files, with extrafunctionality for RRBS data. + +https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/ # Available modules @@ -17,10 +21,10 @@ To start using Trim_Galore, load one of these modules using a `module load` comm module load Trim_Galore/0.6.6-GCC-10.2.0-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Trim_Galore/0.6.6-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x|x|x| -|Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4|-|x|x|-|x|x|-|x| -|Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Trim_Galore/0.6.6-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x| +|Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4|-|x|x|-|x|x| +|Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Trimmomatic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Trimmomatic.md index 52a526da678e..36b6ef0eb704 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Trimmomatic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Trimmomatic.md @@ -6,6 +6,10 @@ hide: Trimmomatic =========== + +Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line. + +http://www.usadellab.org/cms/?page=trimmomatic # Available modules @@ -17,9 +21,9 @@ To start using Trimmomatic, load one of these modules using a `module load` comm module load Trimmomatic/0.39-Java-11 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Trimmomatic/0.39-Java-11|x|x|x|x|x|x|x|x| -|Trimmomatic/0.38-Java-1.8|-|-|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Trimmomatic/0.39-Java-11|x|x|x|x|x|x| +|Trimmomatic/0.38-Java-1.8|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Trinity.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Trinity.md index e9b6c1f4b8be..a7eefe132d95 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Trinity.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Trinity.md @@ -6,6 +6,10 @@ hide: Trinity ======= + +Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads. + +https://trinityrnaseq.github.io # Available modules @@ -17,11 +21,11 @@ To start using Trinity, load one of these modules using a `module load` command module load Trinity/2.15.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Trinity/2.15.1-foss-2022a|x|x|x|x|x|x|x|x| -|Trinity/2.10.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|Trinity/2.9.1-foss-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| -|Trinity/2.8.5-GCC-8.3.0-Java-11|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Trinity/2.15.1-foss-2022a|x|x|x|x|x|x| +|Trinity/2.10.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|Trinity/2.9.1-foss-2019b-Python-2.7.16|-|x|x|-|x|x| +|Trinity/2.8.5-GCC-8.3.0-Java-11|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Triton.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Triton.md new file mode 100644 index 000000000000..393723ccab87 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Triton.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Triton +====== + + +Triton is a language and compiler for parallel programming. It aims to provide aPython-based programming environment for productively writing custom DNN computekernels capable of running at maximal throughput on modern GPU hardware. + +https://triton-lang.org/ +# Available modules + + +The overview below shows which Triton installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Triton, load one of these modules using a `module load` command like: + +```shell +module load Triton/1.1.1-foss-2022a-CUDA-11.7.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Triton/1.1.1-foss-2022a-CUDA-11.7.0|-|-|x|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Trycycler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Trycycler.md index c7c7caff552a..d520467121aa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Trycycler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Trycycler.md @@ -6,6 +6,10 @@ hide: Trycycler ========= + +Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes. + +https://github.com/rrwick/Trycycler # Available modules @@ -17,8 +21,8 @@ To start using Trycycler, load one of these modules using a `module load` comman module load Trycycler/0.3.3-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Trycycler/0.3.3-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Trycycler/0.3.3-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/TurboVNC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/TurboVNC.md index 6fc0bb5a365a..45a3fc1c532e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/TurboVNC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/TurboVNC.md @@ -6,6 +6,10 @@ hide: TurboVNC ======== + +TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads. + +https://www.turbovnc.org # Available modules @@ -17,9 +21,9 @@ To start using TurboVNC, load one of these modules using a `module load` command module load TurboVNC/2.2.6-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|TurboVNC/2.2.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|TurboVNC/2.2.3-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|TurboVNC/2.2.6-GCCcore-11.2.0|x|x|x|x|x|x| +|TurboVNC/2.2.3-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UCC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UCC.md index 02e91ed446a5..d2619c427748 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UCC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UCC.md @@ -6,6 +6,10 @@ hide: UCC === + +UCC (Unified Collective Communication) is a collectivecommunication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. + +https://www.openucx.org/ # Available modules @@ -14,13 +18,14 @@ The overview below shows which UCC installations are available per HPC-UGent Tie To start using UCC, load one of these modules using a `module load` command like: ```shell -module load UCC/1.2.0-GCCcore-12.3.0 +module load UCC/1.2.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|UCC/1.2.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|UCC/1.1.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|UCC/1.0.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|UCC/1.2.0-GCCcore-13.2.0|x|x|x|x|x|x| +|UCC/1.2.0-GCCcore-12.3.0|x|x|x|x|x|x| +|UCC/1.1.0-GCCcore-12.2.0|x|x|x|x|x|x| +|UCC/1.0.0-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UCLUST.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UCLUST.md index fa815a07a59e..524b491a3380 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UCLUST.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UCLUST.md @@ -6,6 +6,10 @@ hide: UCLUST ====== + +UCLUST: Extreme high-speed sequence clustering, alignment and database search. + +http://www.drive5.com/usearch/index.html # Available modules @@ -17,8 +21,8 @@ To start using UCLUST, load one of these modules using a `module load` command l module load UCLUST/1.2.22q-i86linux64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|UCLUST/1.2.22q-i86linux64|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|UCLUST/1.2.22q-i86linux64|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UCX-CUDA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UCX-CUDA.md index c617ffc4f4ee..34611c3f78f1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UCX-CUDA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UCX-CUDA.md @@ -6,6 +6,10 @@ hide: UCX-CUDA ======== + +Unified Communication XAn open-source production grade communication framework for data centricand high-performance applicationsThis module adds the UCX CUDA support. + +http://www.openucx.org/ # Available modules @@ -14,13 +18,14 @@ The overview below shows which UCX-CUDA installations are available per HPC-UGen To start using UCX-CUDA, load one of these modules using a `module load` command like: ```shell -module load UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0 +module load UCX-CUDA/1.14.1-GCCcore-12.3.0-CUDA-12.1.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0|x|-|x|-|x|-|-|-| -|UCX-CUDA/1.11.2-GCCcore-11.2.0-CUDA-11.4.1|x|-|-|-|x|-|-|-| -|UCX-CUDA/1.10.0-GCCcore-10.3.0-CUDA-11.3.1|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|UCX-CUDA/1.14.1-GCCcore-12.3.0-CUDA-12.1.1|x|-|x|-|x|-| +|UCX-CUDA/1.12.1-GCCcore-11.3.0-CUDA-11.7.0|x|-|x|-|x|-| +|UCX-CUDA/1.11.2-GCCcore-11.2.0-CUDA-11.4.1|x|-|-|-|x|-| +|UCX-CUDA/1.10.0-GCCcore-10.3.0-CUDA-11.3.1|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UCX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UCX.md index e417a66e20e5..9cfe887388d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UCX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UCX.md @@ -6,6 +6,10 @@ hide: UCX === + +Unified Communication XAn open-source production grade communication framework for data centricand high-performance applications + +http://www.openucx.org/ # Available modules @@ -14,20 +18,21 @@ The overview below shows which UCX installations are available per HPC-UGent Tie To start using UCX, load one of these modules using a `module load` command like: ```shell -module load UCX/1.14.1-GCCcore-12.3.0 +module load UCX/1.15.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|UCX/1.14.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|UCX/1.13.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|UCX/1.12.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|UCX/1.11.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|UCX/1.10.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|UCX/1.9.0-GCCcore-10.2.0-CUDA-11.2.1|x|-|x|-|x|-|-|-| -|UCX/1.9.0-GCCcore-10.2.0-CUDA-11.1.1|x|x|x|x|x|x|x|x| -|UCX/1.9.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|UCX/1.8.0-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|UCX/1.6.1-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|UCX/1.15.0-GCCcore-13.2.0|x|x|x|x|x|x| +|UCX/1.14.1-GCCcore-12.3.0|x|x|x|x|x|x| +|UCX/1.13.1-GCCcore-12.2.0|x|x|x|x|x|x| +|UCX/1.12.1-GCCcore-11.3.0|x|x|x|x|x|x| +|UCX/1.11.2-GCCcore-11.2.0|x|x|x|x|x|x| +|UCX/1.10.0-GCCcore-10.3.0|x|x|x|x|x|x| +|UCX/1.9.0-GCCcore-10.2.0-CUDA-11.2.1|x|-|x|-|x|-| +|UCX/1.9.0-GCCcore-10.2.0-CUDA-11.1.1|x|x|x|x|x|x| +|UCX/1.9.0-GCCcore-10.2.0|x|x|x|x|x|x| +|UCX/1.8.0-GCCcore-9.3.0|x|x|x|x|x|x| +|UCX/1.6.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UDUNITS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UDUNITS.md index ff65063c925e..f77496922be4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UDUNITS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UDUNITS.md @@ -6,6 +6,10 @@ hide: UDUNITS ======= + +UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement. + +https://www.unidata.ucar.edu/software/udunits/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which UDUNITS installations are available per HPC-UGent To start using UDUNITS, load one of these modules using a `module load` command like: ```shell -module load UDUNITS/2.2.28-GCCcore-12.2.0 +module load UDUNITS/2.2.28-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|UDUNITS/2.2.28-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|UDUNITS/2.2.28-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|UDUNITS/2.2.28-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|UDUNITS/2.2.28-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|UDUNITS/2.2.26-foss-2020a|-|x|x|-|x|x|x|x| -|UDUNITS/2.2.26-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|UDUNITS/2.2.26-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|UDUNITS/2.2.26-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|UDUNITS/2.2.28-GCCcore-12.3.0|x|x|x|x|x|x| +|UDUNITS/2.2.28-GCCcore-12.2.0|x|x|x|x|x|x| +|UDUNITS/2.2.28-GCCcore-11.3.0|x|x|x|x|x|x| +|UDUNITS/2.2.28-GCCcore-11.2.0|x|x|x|x|x|x| +|UDUNITS/2.2.28-GCCcore-10.3.0|x|x|x|x|x|x| +|UDUNITS/2.2.26-foss-2020a|-|x|x|-|x|x| +|UDUNITS/2.2.26-GCCcore-10.2.0|x|x|x|x|x|x| +|UDUNITS/2.2.26-GCCcore-9.3.0|-|x|x|-|x|x| +|UDUNITS/2.2.26-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UFL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UFL.md index f4802e431bf4..504d9542e56b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UFL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UFL.md @@ -6,6 +6,10 @@ hide: UFL === + +The Unified Form Language (UFL) is a domain specific language for declaration of finite element discretizations of variational forms. More precisely, it defines a flexible interface for choosing finite element spaces and defining expressions for weak forms in a notation close to mathematical notation. + +https://bitbucket.org/fenics-project/ufl # Available modules @@ -17,8 +21,8 @@ To start using UFL, load one of these modules using a `module load` command like module load UFL/2019.1.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|UFL/2019.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|UFL/2019.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UMI-tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UMI-tools.md index 0f01c7484749..01cc6ef08967 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UMI-tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UMI-tools.md @@ -6,6 +6,10 @@ hide: UMI-tools ========= + +Tools for handling Unique Molecular Identifiers in NGS data sets + +https://umi-tools.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using UMI-tools, load one of these modules using a `module load` comman module load UMI-tools/1.0.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|UMI-tools/1.0.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### UMI-tools/1.0.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|UMI-tools/1.0.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +regex-2020.4.4, UMI-tools-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UQTk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UQTk.md index c8baee18cdc9..bd5f449b4a42 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UQTk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UQTk.md @@ -6,6 +6,10 @@ hide: UQTk ==== + +The UQ Toolkit (UQTk) is a collection of libraries and tools for the quantification of uncertainty in numerical model predictions. + +https://www.sandia.gov/UQToolkit/ # Available modules @@ -17,8 +21,8 @@ To start using UQTk, load one of these modules using a `module load` command lik module load UQTk/3.1.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|UQTk/3.1.0-intel-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|UQTk/3.1.0-intel-2019b-Python-3.7.4|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/USEARCH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/USEARCH.md index bbff2f950fef..592154339726 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/USEARCH.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/USEARCH.md @@ -6,6 +6,10 @@ hide: USEARCH ======= + +USEARCH is a unique sequence analysis tool which offers search and clustering algorithms that are often orders of magnitude faster than BLAST. + +https://www.drive5.com/usearch/index.html # Available modules @@ -17,8 +21,8 @@ To start using USEARCH, load one of these modules using a `module load` command module load USEARCH/11.0.667-i86linux32 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|USEARCH/11.0.667-i86linux32|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|USEARCH/11.0.667-i86linux32|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UnZip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UnZip.md index 6610be77d54d..0d38c1ed3bdb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/UnZip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UnZip.md @@ -6,6 +6,10 @@ hide: UnZip ===== + +UnZip is an extraction utility for archives compressedin .zip format (also called "zipfiles"). Although highly compatible bothwith PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP'sown Zip program, our primary objectives have been portability andnon-MSDOS functionality. + +http://www.info-zip.org/UnZip.html # Available modules @@ -14,17 +18,18 @@ The overview below shows which UnZip installations are available per HPC-UGent T To start using UnZip, load one of these modules using a `module load` command like: ```shell -module load UnZip/6.0-GCCcore-12.3.0 +module load UnZip/6.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|UnZip/6.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|UnZip/6.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|UnZip/6.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|UnZip/6.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|UnZip/6.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|UnZip/6.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|UnZip/6.0-GCCcore-9.3.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|UnZip/6.0-GCCcore-13.2.0|x|x|x|x|x|x| +|UnZip/6.0-GCCcore-12.3.0|x|x|x|x|x|x| +|UnZip/6.0-GCCcore-12.2.0|x|x|x|x|x|x| +|UnZip/6.0-GCCcore-11.3.0|x|x|x|x|x|x| +|UnZip/6.0-GCCcore-11.2.0|x|x|x|x|x|x| +|UnZip/6.0-GCCcore-10.3.0|x|x|x|x|x|x| +|UnZip/6.0-GCCcore-10.2.0|x|x|x|x|x|x| +|UnZip/6.0-GCCcore-9.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/UniFrac.md b/mkdocs/docs/HPC/only/gent/available_software/detail/UniFrac.md new file mode 100644 index 000000000000..ba85339a2ae2 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/UniFrac.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +UniFrac +======= + + +UniFrac is the de facto repository for high-performance phylogenetic diversitycalculations. The methods in this repository are based on an implementation ofthe Strided State UniFrac algorithm which is faster, and uses less memory thanFast UniFrac. Strided State UniFrac supports Unweighted UniFrac, WeightedUniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac, inboth double and single precision (fp32). This repository also includes StackedFaith (manuscript in preparation), a method for calculating Faith's PD that isfaster and uses less memory than the Fast UniFrac-based referenceimplementation. + +https://github.com/biocore/unifrac-binaries +# Available modules + + +The overview below shows which UniFrac installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using UniFrac, load one of these modules using a `module load` command like: + +```shell +module load UniFrac/1.3.2-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|UniFrac/1.3.2-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Unicycler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Unicycler.md index f911852da528..23ce35d1b512 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Unicycler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Unicycler.md @@ -6,6 +6,10 @@ hide: Unicycler ========= + +Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. + +https://github.com/rrwick/Unicycler # Available modules @@ -17,8 +21,8 @@ To start using Unicycler, load one of these modules using a `module load` comman module load Unicycler/0.4.8-gompi-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Unicycler/0.4.8-gompi-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Unicycler/0.4.8-gompi-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Unidecode.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Unidecode.md index eb1fabb1794e..0899d84c00ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Unidecode.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Unidecode.md @@ -6,6 +6,10 @@ hide: Unidecode ========= + +Python library for lossy ASCII transliterations of Unicode text (port of Text::Unidecode Perl module) + +https://github.com/avian2/unidecode # Available modules @@ -17,9 +21,9 @@ To start using Unidecode, load one of these modules using a `module load` comman module load Unidecode/1.3.6-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Unidecode/1.3.6-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Unidecode/1.1.1-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Unidecode/1.3.6-GCCcore-11.3.0|x|x|x|x|x|x| +|Unidecode/1.1.1-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VASP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VASP.md index 3fd83f896d7c..16d12346688d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VASP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VASP.md @@ -6,6 +6,10 @@ hide: VASP ==== + +The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scalematerials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics,from first principles. + +http://www.vasp.at # Available modules @@ -14,31 +18,35 @@ The overview below shows which VASP installations are available per HPC-UGent Ti To start using VASP, load one of these modules using a `module load` command like: ```shell -module load VASP/6.4.2-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0 +module load VASP/6.4.2-gomkl-2023a-VASPsol-20210413-vtst-197-Wannier90-3.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VASP/6.4.2-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0|-|x|x|x|x|x|x|x| -|VASP/6.4.2-gomkl-2021a|-|x|x|x|x|x|x|x| -|VASP/6.4.2-NVHPC-21.2-CUDA-11.2.1|x|-|x|-|x|-|-|-| -|VASP/6.4.1-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0|-|x|x|x|x|x|x|x| -|VASP/6.4.1-gomkl-2021a|-|x|x|x|x|x|x|x| -|VASP/6.4.1-NVHPC-21.2-CUDA-11.2.1|x|-|x|-|x|-|-|-| -|VASP/6.3.1-gomkl-2021a-VASPsol-20210413-vtst-184-Wannier90-3.1.0|x|x|x|x|x|x|x|x| -|VASP/6.3.1-gomkl-2021a|-|x|x|x|x|x|x|x| -|VASP/6.3.1-NVHPC-21.2-CUDA-11.2.1|x|-|-|-|x|-|-|-| -|VASP/6.3.0-gomkl-2021a-VASPsol-20210413|-|x|x|x|x|x|x|x| -|VASP/6.2.1-gomkl-2021a|-|x|x|x|x|x|x|x| -|VASP/6.2.1-NVHPC-21.2-CUDA-11.2.1|x|-|-|-|x|-|-|-| -|VASP/6.2.0-intel-2020a|-|x|x|-|x|x|x|x| -|VASP/6.2.0-gomkl-2020a|-|x|x|x|x|x|x|x| -|VASP/6.2.0-foss-2020a|-|x|x|-|x|x|x|x| -|VASP/6.1.2-intel-2020a|-|x|x|-|x|x|-|x| -|VASP/6.1.2-gomkl-2020a|-|x|x|x|x|x|-|x| -|VASP/6.1.2-foss-2020a|-|x|x|-|x|x|-|x| -|VASP/5.4.4-iomkl-2020b-vtst-176-mt-20180516|x|x|x|x|x|x|x|x| -|VASP/5.4.4-intel-2019b-mt-20180516-ncl|-|x|x|-|x|x|-|x| -|VASP/5.4.4-intel-2019b-mt-20180516|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VASP/6.4.2-gomkl-2023a-VASPsol-20210413-vtst-197-Wannier90-3.1.0|x|x|x|x|x|x| +|VASP/6.4.2-gomkl-2023a|x|x|x|x|x|x| +|VASP/6.4.2-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0|-|x|x|x|x|x| +|VASP/6.4.2-gomkl-2021a|-|x|x|x|x|x| +|VASP/6.4.2-foss-2023a-VASPsol-20210413-vtst-197-Wannier90-3.1.0|x|x|x|x|x|x| +|VASP/6.4.2-foss-2023a|x|x|x|x|x|x| +|VASP/6.4.2-NVHPC-21.2-CUDA-11.2.1|x|-|x|-|x|-| +|VASP/6.4.1-gomkl-2021a-VASPsol-20210413-vtst-197-Wannier90-3.1.0|-|x|x|x|x|x| +|VASP/6.4.1-gomkl-2021a|-|x|x|x|x|x| +|VASP/6.4.1-NVHPC-21.2-CUDA-11.2.1|x|-|x|-|x|-| +|VASP/6.3.1-gomkl-2021a-VASPsol-20210413-vtst-184-Wannier90-3.1.0|x|x|x|x|x|x| +|VASP/6.3.1-gomkl-2021a|-|x|x|x|x|x| +|VASP/6.3.1-NVHPC-21.2-CUDA-11.2.1|x|-|-|-|x|-| +|VASP/6.3.0-gomkl-2021a-VASPsol-20210413|-|x|x|x|x|x| +|VASP/6.2.1-gomkl-2021a|-|x|x|x|x|x| +|VASP/6.2.1-NVHPC-21.2-CUDA-11.2.1|x|-|-|-|x|-| +|VASP/6.2.0-intel-2020a|-|x|x|-|x|x| +|VASP/6.2.0-gomkl-2020a|-|x|x|x|x|x| +|VASP/6.2.0-foss-2020a|-|x|x|-|x|x| +|VASP/6.1.2-intel-2020a|-|x|x|-|x|x| +|VASP/6.1.2-gomkl-2020a|-|x|x|x|x|x| +|VASP/6.1.2-foss-2020a|-|x|x|-|x|x| +|VASP/5.4.4-iomkl-2020b-vtst-176-mt-20180516|x|x|x|x|x|x| +|VASP/5.4.4-intel-2019b-mt-20180516-ncl|-|x|x|-|x|x| +|VASP/5.4.4-intel-2019b-mt-20180516|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VBZ-Compression.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VBZ-Compression.md index 9d07fc6ae6ea..5dbad0ae1c76 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VBZ-Compression.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VBZ-Compression.md @@ -6,6 +6,10 @@ hide: VBZ-Compression =============== + +VBZ compression HDF5 plugin for nanopolish + +https://github.com/nanoporetech/vbz_compression # Available modules @@ -14,11 +18,12 @@ The overview below shows which VBZ-Compression installations are available per H To start using VBZ-Compression, load one of these modules using a `module load` command like: ```shell -module load VBZ-Compression/1.0.1-gompi-2020b +module load VBZ-Compression/1.0.3-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VBZ-Compression/1.0.1-gompi-2020b|-|-|x|x|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VBZ-Compression/1.0.3-gompi-2022a|x|x|x|x|x|x| +|VBZ-Compression/1.0.1-gompi-2020b|-|-|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VCFtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VCFtools.md index cc116c482c76..3eb8f73d25ca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VCFtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VCFtools.md @@ -6,6 +6,10 @@ hide: VCFtools ======== + +The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files. + +https://vcftools.github.io # Available modules @@ -17,9 +21,9 @@ To start using VCFtools, load one of these modules using a `module load` command module load VCFtools/0.1.16-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VCFtools/0.1.16-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|VCFtools/0.1.16-GCC-10.2.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VCFtools/0.1.16-iccifort-2019.5.281|-|x|x|-|x|x| +|VCFtools/0.1.16-GCC-10.2.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VEP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VEP.md index 0f9d770592aa..b77f448917f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VEP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VEP.md @@ -6,6 +6,10 @@ hide: VEP === + +Variant Effect Predictor (VEP) determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions. Includes EnsEMBL-XS, which provides pre-compiled replacements for frequently used routines in VEP. + +https://www.ensembl.org/info/docs/tools/vep # Available modules @@ -17,9 +21,22 @@ To start using VEP, load one of these modules using a `module load` command like module load VEP/107-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VEP/107-GCC-11.3.0|x|x|x|-|x|x| +|VEP/105-GCC-11.2.0|x|x|x|-|x|x| + + +### VEP/107-GCC-11.3.0 + +This is a list of extensions included in the module: + +Bio::EnsEMBL::XS-2.3.2 + +### VEP/105-GCC-11.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VEP/107-GCC-11.3.0|x|x|x|-|x|x|x|x| -|VEP/105-GCC-11.2.0|x|x|x|-|x|x|x|x| +Bio::EnsEMBL::XS-2.3.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VESTA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VESTA.md index 19e8b727aa39..87f29e784729 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VESTA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VESTA.md @@ -6,6 +6,10 @@ hide: VESTA ===== + +VESTA is a 3D visualization program for structured models, volumetric data such as electron/nuclear densities, and crystal morphologies. + +http://www.jp-minerals.org/vesta # Available modules @@ -17,8 +21,8 @@ To start using VESTA, load one of these modules using a `module load` command li module load VESTA/3.5.8-gtk3 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VESTA/3.5.8-gtk3|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VESTA/3.5.8-gtk3|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VMD.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VMD.md index 71ba0910d078..3ce1108862b4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VMD.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VMD.md @@ -6,6 +6,10 @@ hide: VMD === + +VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. + +https://www.ks.uiuc.edu/Research/vmd # Available modules @@ -17,8 +21,8 @@ To start using VMD, load one of these modules using a `module load` command like module load VMD/1.9.4a51-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VMD/1.9.4a51-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VMD/1.9.4a51-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VMTK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VMTK.md index 0c8cf7bd8bad..4a088e1def46 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VMTK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VMTK.md @@ -6,6 +6,10 @@ hide: VMTK ==== + +vmtk is a collection of libraries and toolsfor 3D reconstruction, geometric analysis, mesh generation andsurface data analysis for image-based modeling of blood vessels. + +https://vmtk.org # Available modules @@ -17,8 +21,8 @@ To start using VMTK, load one of these modules using a `module load` command lik module load VMTK/1.4.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VMTK/1.4.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VMTK/1.4.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VSCode.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VSCode.md new file mode 100644 index 000000000000..a4c7afdf7f99 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VSCode.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +VSCode +====== + + +Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos. + +https://code.visualstudio.com/ +# Available modules + + +The overview below shows which VSCode installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using VSCode, load one of these modules using a `module load` command like: + +```shell +module load VSCode/1.85.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VSCode/1.85.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VSEARCH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VSEARCH.md index a2a79504147f..8925c4fab0ac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VSEARCH.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VSEARCH.md @@ -6,6 +6,10 @@ hide: VSEARCH ======= + +VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads. + +https://github.com/torognes/vsearch # Available modules @@ -17,9 +21,9 @@ To start using VSEARCH, load one of these modules using a `module load` command module load VSEARCH/2.22.1-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VSEARCH/2.22.1-GCC-11.3.0|x|x|x|x|x|x|x|x| -|VSEARCH/2.18.0-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VSEARCH/2.22.1-GCC-11.3.0|x|x|x|x|x|x| +|VSEARCH/2.18.0-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VTK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VTK.md index 900db3ab6e13..73ab2e3d7a5f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VTK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VTK.md @@ -6,6 +6,10 @@ hide: VTK === + +The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation. + +https://www.vtk.org # Available modules @@ -17,16 +21,16 @@ To start using VTK, load one of these modules using a `module load` command like module load VTK/9.2.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VTK/9.2.2-foss-2022a|x|x|x|x|x|x|x|x| -|VTK/9.2.0.rc2-foss-2022a|x|x|x|-|x|x|x|x| -|VTK/9.1.0-foss-2021b|x|x|x|-|x|x|x|x| -|VTK/9.0.1-fosscuda-2020b|x|-|-|-|x|-|-|-| -|VTK/9.0.1-foss-2021a|-|x|x|-|x|x|x|x| -|VTK/9.0.1-foss-2020b|-|x|x|x|x|x|x|x| -|VTK/8.2.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|VTK/8.2.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|VTK/8.2.0-foss-2019b-Python-2.7.16|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VTK/9.2.2-foss-2022a|x|x|x|x|x|x| +|VTK/9.2.0.rc2-foss-2022a|x|x|x|-|x|x| +|VTK/9.1.0-foss-2021b|x|x|x|-|x|x| +|VTK/9.0.1-fosscuda-2020b|x|-|-|-|x|-| +|VTK/9.0.1-foss-2021a|-|x|x|-|x|x| +|VTK/9.0.1-foss-2020b|-|x|x|x|x|x| +|VTK/8.2.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|VTK/8.2.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|VTK/8.2.0-foss-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VTune.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VTune.md index c74745d42717..a3ac9e780780 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VTune.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VTune.md @@ -6,6 +6,10 @@ hide: VTune ===== + +Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java. + +http://software.intel.com/en-us/intel-vtune-amplifier-xe # Available modules @@ -17,8 +21,8 @@ To start using VTune, load one of these modules using a `module load` command li module load VTune/2019_update2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VTune/2019_update2|-|-|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VTune/2019_update2|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Vala.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Vala.md index d4f8c212a2c9..d05e5f5e4c39 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Vala.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Vala.md @@ -6,6 +6,10 @@ hide: Vala ==== + +Vala is a programming language using modern high level abstractions without imposing additional runtimerequirements and without using a different ABI compared to applications and libraries written in C. + +https://wiki.gnome.org/Projects/Vala # Available modules @@ -17,8 +21,8 @@ To start using Vala, load one of these modules using a `module load` command lik module load Vala/0.52.4-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Vala/0.52.4-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Vala/0.52.4-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Valgrind.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Valgrind.md index 6152f6d7e5f0..9e3e70acadd9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Valgrind.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Valgrind.md @@ -6,6 +6,10 @@ hide: Valgrind ======== + +Valgrind: Debugging and profiling tools + +https://valgrind.org # Available modules @@ -17,12 +21,12 @@ To start using Valgrind, load one of these modules using a `module load` command module load Valgrind/3.20.0-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Valgrind/3.20.0-gompi-2022a|x|x|x|-|x|x|x|x| -|Valgrind/3.19.0-gompi-2022a|x|x|x|-|x|x|x|x| -|Valgrind/3.18.1-iimpi-2021b|x|x|x|-|x|x|x|x| -|Valgrind/3.18.1-gompi-2021b|x|x|x|-|x|x|x|x| -|Valgrind/3.17.0-gompi-2021a|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Valgrind/3.20.0-gompi-2022a|x|x|x|-|x|x| +|Valgrind/3.19.0-gompi-2022a|x|x|x|-|x|x| +|Valgrind/3.18.1-iimpi-2021b|x|x|x|-|x|x| +|Valgrind/3.18.1-gompi-2021b|x|x|x|-|x|x| +|Valgrind/3.17.0-gompi-2021a|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VarScan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VarScan.md index 65f9ec50655f..4800813d89e3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VarScan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VarScan.md @@ -6,6 +6,10 @@ hide: VarScan ======= + +Variant calling and somatic mutation/CNV detection for next-generation sequencing data + +https://github.com/dkoboldt/varscan # Available modules @@ -17,8 +21,8 @@ To start using VarScan, load one of these modules using a `module load` command module load VarScan/2.4.4-Java-11 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VarScan/2.4.4-Java-11|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VarScan/2.4.4-Java-11|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Velvet.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Velvet.md index 7463c7f5b6a9..505ce5a5f7ee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Velvet.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Velvet.md @@ -6,6 +6,10 @@ hide: Velvet ====== + +Sequence assembler for very short reads + +https://www.ebi.ac.uk/~zerbino/velvet/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which Velvet installations are available per HPC-UGent To start using Velvet, load one of these modules using a `module load` command like: ```shell -module load Velvet/1.2.10-GCC-11.2.0-mt-kmer_191 +module load Velvet/1.2.10-foss-2023a-mt-kmer_191 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Velvet/1.2.10-GCC-11.2.0-mt-kmer_191|x|x|x|x|x|x|x|x| -|Velvet/1.2.10-GCC-8.3.0-mt-kmer_191|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Velvet/1.2.10-foss-2023a-mt-kmer_191|x|x|x|x|x|x| +|Velvet/1.2.10-GCC-11.2.0-mt-kmer_191|x|x|x|x|x|x| +|Velvet/1.2.10-GCC-8.3.0-mt-kmer_191|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VirSorter2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VirSorter2.md index 4696ca07435a..68895ece21dd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/VirSorter2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VirSorter2.md @@ -6,6 +6,10 @@ hide: VirSorter2 ========== + +VirSorter2 applies a multi-classifier, expert-guided approach to detect diverse DNA and RNA virus genomes. + +https://github.com/jiarong/VirSorter2 # Available modules @@ -17,8 +21,15 @@ To start using VirSorter2, load one of these modules using a `module load` comma module load VirSorter2/2.2.4-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VirSorter2/2.2.4-foss-2022a|x|x|x|x|x|x| + + +### VirSorter2/2.2.4-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|VirSorter2/2.2.4-foss-2022a|x|x|x|x|x|x|x|x| +VirSorter2-2.2.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/VisPy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/VisPy.md new file mode 100644 index 000000000000..f8e4e5c5067d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/VisPy.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +VisPy +===== + + +VisPy is a high-performance interactive 2D/3D data visualization library leveraging the computational power of modern Graphics Processing Units (GPUs) through the OpenGL library to display very large datasets. + +https://vispy.org +# Available modules + + +The overview below shows which VisPy installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using VisPy, load one of these modules using a `module load` command like: + +```shell +module load VisPy/0.12.2-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|VisPy/0.12.2-foss-2022a|x|x|x|x|x|x| + + +### VisPy/0.12.2-foss-2022a + +This is a list of extensions included in the module: + +freetype_py-2.4.0, hsluv-5.0.3, vispy-0.12.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Voro++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Voro++.md index 2e029dd8ef38..6c2d1bcd0892 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Voro++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Voro++.md @@ -6,6 +6,10 @@ hide: Voro++ ====== + +Voro++ is a software library for carrying out three-dimensional computations of the Voronoitessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations,computing the Voronoi cell for each particle individually. It is particularly well-suited for applications thatrely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be usedto analyze a system of particles. + +http://math.lbl.gov/voro++/ # Available modules @@ -17,12 +21,12 @@ To start using Voro++, load one of these modules using a `module load` command l module load Voro++/0.4.6-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Voro++/0.4.6-intel-2019b|-|x|x|-|x|x|-|x| -|Voro++/0.4.6-foss-2019b|-|x|x|-|x|x|-|x| -|Voro++/0.4.6-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|Voro++/0.4.6-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|Voro++/0.4.6-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Voro++/0.4.6-intel-2019b|-|x|x|-|x|x| +|Voro++/0.4.6-foss-2019b|-|x|x|-|x|x| +|Voro++/0.4.6-GCCcore-11.2.0|x|x|x|-|x|x| +|Voro++/0.4.6-GCCcore-10.3.0|-|x|x|-|x|x| +|Voro++/0.4.6-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WFA2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WFA2.md new file mode 100644 index 000000000000..1fc16e25dfdb --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WFA2.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +WFA2 +==== + + +The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm that takes advantage of homologous regions between the sequences to accelerate the alignment process. + +https://github.com/smarco/WFA2-lib +# Available modules + + +The overview below shows which WFA2 installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using WFA2, load one of these modules using a `module load` command like: + +```shell +module load WFA2/2.3.3-GCCcore-11.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|WFA2/2.3.3-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WHAM.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WHAM.md index 8e141ce546de..5483df08d787 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WHAM.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WHAM.md @@ -6,6 +6,10 @@ hide: WHAM ==== + +An implementation of WHAM: the Weighted Histogram Analysis Method + +http://membrane.urmc.rochester.edu/?page_id=126 # Available modules @@ -17,9 +21,9 @@ To start using WHAM, load one of these modules using a `module load` command lik module load WHAM/2.0.10.2-intel-2020a-kj_mol ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|WHAM/2.0.10.2-intel-2020a-kj_mol|-|x|x|-|x|x|x|x| -|WHAM/2.0.10.2-intel-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|WHAM/2.0.10.2-intel-2020a-kj_mol|-|x|x|-|x|x| +|WHAM/2.0.10.2-intel-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WIEN2k.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WIEN2k.md index d8970fbb9cd7..8d8bbeaf7531 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WIEN2k.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WIEN2k.md @@ -6,6 +6,10 @@ hide: WIEN2k ====== + +The program package WIEN2k allows to perform electronic structure calculations of solidsusing density functional theory (DFT). It is based on the full-potential (linearized) augmented plane-wave((L)APW) + local orbitals (lo) method, one among the most accurate schemes for band structure calculations.WIEN2k is an all-electron scheme including relativistic effects and has many features. + +http://www.wien2k.at/ # Available modules @@ -17,9 +21,9 @@ To start using WIEN2k, load one of these modules using a `module load` command l module load WIEN2k/21.1-intel-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|WIEN2k/21.1-intel-2021a|-|x|x|-|x|x|x|x| -|WIEN2k/19.2-intel-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|WIEN2k/21.1-intel-2021a|-|x|x|-|x|x| +|WIEN2k/19.2-intel-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WPS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WPS.md index ff2c51f9170e..be7ec943d0b3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WPS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WPS.md @@ -6,6 +6,10 @@ hide: WPS === + +WRF Preprocessing System (WPS) for WRF. The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. + +http://www.wrf-model.org # Available modules @@ -17,8 +21,8 @@ To start using WPS, load one of these modules using a `module load` command like module load WPS/4.1-intel-2019b-dmpar ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|WPS/4.1-intel-2019b-dmpar|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|WPS/4.1-intel-2019b-dmpar|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WRF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WRF.md index 75d4df4946bd..f2a9cfefd7a5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WRF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WRF.md @@ -6,6 +6,10 @@ hide: WRF === + +The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs. + +http://www.wrf-model.org # Available modules @@ -17,10 +21,10 @@ To start using WRF, load one of these modules using a `module load` command like module load WRF/4.1.3-intel-2019b-dmpar ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|WRF/4.1.3-intel-2019b-dmpar|-|x|x|-|x|x|x|x| -|WRF/3.9.1.1-intel-2020b-dmpar|-|x|x|x|x|x|x|x| -|WRF/3.8.0-intel-2019b-dmpar|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|WRF/4.1.3-intel-2019b-dmpar|-|x|x|-|x|x| +|WRF/3.9.1.1-intel-2020b-dmpar|-|x|x|x|x|x| +|WRF/3.8.0-intel-2019b-dmpar|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Wannier90.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Wannier90.md index c7eb5b4db42f..66c44b0b9c24 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Wannier90.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Wannier90.md @@ -6,6 +6,10 @@ hide: Wannier90 ========= + +A tool for obtaining maximally-localised Wannier functions + +http://www.wannier.org # Available modules @@ -17,12 +21,14 @@ To start using Wannier90, load one of these modules using a `module load` comman module load Wannier90/3.1.0-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Wannier90/3.1.0-intel-2022a|-|-|x|-|x|x|x|x| -|Wannier90/3.1.0-intel-2020b|-|x|x|x|x|x|x|x| -|Wannier90/3.1.0-intel-2020a|-|x|x|-|x|x|x|x| -|Wannier90/3.1.0-gomkl-2021a|x|x|x|x|x|x|x|x| -|Wannier90/3.1.0-foss-2020b|-|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Wannier90/3.1.0-intel-2022a|-|-|x|-|x|x| +|Wannier90/3.1.0-intel-2020b|-|x|x|x|x|x| +|Wannier90/3.1.0-intel-2020a|-|x|x|-|x|x| +|Wannier90/3.1.0-gomkl-2023a|x|x|x|x|x|x| +|Wannier90/3.1.0-gomkl-2021a|x|x|x|x|x|x| +|Wannier90/3.1.0-foss-2023a|x|x|x|x|x|x| +|Wannier90/3.1.0-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Wayland.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Wayland.md index a3750b66a07e..1498f7a92eb2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Wayland.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Wayland.md @@ -6,6 +6,10 @@ hide: Wayland ======= + +Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers. + +https://wayland.freedesktop.org/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which Wayland installations are available per HPC-UGent To start using Wayland, load one of these modules using a `module load` command like: ```shell -module load Wayland/1.21.0-GCCcore-11.2.0 +module load Wayland/1.22.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Wayland/1.21.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Wayland/1.20.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Wayland/1.22.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Wayland/1.21.0-GCCcore-11.2.0|x|x|x|x|x|x| +|Wayland/1.20.0-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Waylandpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Waylandpp.md index d839f5e2ab2e..69e5d43e98c4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Waylandpp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Waylandpp.md @@ -6,6 +6,10 @@ hide: Waylandpp ========= + +Wayland is an object oriented display protocol, which features request and events. Requests can be seen as method calls on certain objects, whereas events can be seen as signals of an object. This makes the Wayland protocol a perfect candidate for a C++ binding.The goal of this library is to create such a C++ binding for Wayland using the most modern C++ technology currently available, providing an easy to use C++ API to Wayland. + +https://github.com/NilsBrause/waylandpp # Available modules @@ -17,8 +21,8 @@ To start using Waylandpp, load one of these modules using a `module load` comman module load Waylandpp/1.0.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Waylandpp/1.0.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Waylandpp/1.0.0-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WebKitGTK+.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WebKitGTK+.md index ffd12647a6df..7b8aaf15cac3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WebKitGTK+.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WebKitGTK+.md @@ -6,6 +6,10 @@ hide: WebKitGTK+ ========== + +WebKitGTK+ is a full-featured port of the WebKitrendering engine, suitable for projects requiring any kind of webintegration, from hybrid HTML/CSS applications to full-fledged webbrowsers. It offers WebKit's full functionality and is useful in a widerange of systems from desktop computers to embedded systems like phones,tablets, and televisions. + +https://webkitgtk.org/ # Available modules @@ -17,9 +21,9 @@ To start using WebKitGTK+, load one of these modules using a `module load` comma module load WebKitGTK+/2.37.1-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|WebKitGTK+/2.37.1-GCC-11.2.0|x|x|x|x|x|x|x|x| -|WebKitGTK+/2.27.4-GCC-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|WebKitGTK+/2.37.1-GCC-11.2.0|x|x|x|x|x|x| +|WebKitGTK+/2.27.4-GCC-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WhatsHap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WhatsHap.md index 55563df6e527..ea6a654009c4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WhatsHap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WhatsHap.md @@ -6,6 +6,10 @@ hide: WhatsHap ======== + +WhatsHap is a software for phasing genomic variants using DNAsequencing reads, also called read-based phasing or haplotype assembly. It isespecially suitable for long reads, but works also well with short reads. + +https://whatshap.readthedocs.io # Available modules @@ -17,10 +21,29 @@ To start using WhatsHap, load one of these modules using a `module load` command module load WhatsHap/1.7-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|WhatsHap/1.7-foss-2022a|x|x|x|x|x|x| +|WhatsHap/1.4-foss-2021b|x|x|x|-|x|x| +|WhatsHap/1.1-foss-2021a|x|x|x|-|x|x| + + +### WhatsHap/1.7-foss-2022a + +This is a list of extensions included in the module: + +pulp-2.7.0, WhatsHap-1.7, xopen-1.5.0 + +### WhatsHap/1.4-foss-2021b + +This is a list of extensions included in the module: + +WhatsHap-1.4, xopen-1.5.0 + +### WhatsHap/1.1-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|WhatsHap/1.7-foss-2022a|x|x|x|x|x|x|x|x| -|WhatsHap/1.4-foss-2021b|x|x|x|-|x|x|x|x| -|WhatsHap/1.1-foss-2021a|x|x|x|-|x|x|x|x| +WhatsHap-1.1, xopen-1.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Winnowmap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Winnowmap.md index c156d769b2f9..921ff506ce10 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Winnowmap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Winnowmap.md @@ -6,6 +6,10 @@ hide: Winnowmap ========= + +Winnowmap is a long-read mapping algorithm, and a result of our exploration into superior minimizer sampling techniques. + +https://github.com/marbl/Winnowmap # Available modules @@ -17,8 +21,8 @@ To start using Winnowmap, load one of these modules using a `module load` comman module load Winnowmap/1.0-GCC-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Winnowmap/1.0-GCC-8.3.0|-|x|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Winnowmap/1.0-GCC-8.3.0|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/WisecondorX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/WisecondorX.md index d8b21bb20b02..b532359a79c9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/WisecondorX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/WisecondorX.md @@ -6,6 +6,10 @@ hide: WisecondorX =========== + +WisecondorX -- an evolved WISECONDOR + +https://github.com/CenterForMedicalGeneticsGhent/WisecondorX # Available modules @@ -17,8 +21,8 @@ To start using WisecondorX, load one of these modules using a `module load` comm module load WisecondorX/1.1.6-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|WisecondorX/1.1.6-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|WisecondorX/1.1.6-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/X11.md b/mkdocs/docs/HPC/only/gent/available_software/detail/X11.md index 84731cf7a381..9c434b7b3c55 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/X11.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/X11.md @@ -6,6 +6,10 @@ hide: X11 === + +The X Window System (X11) is a windowing system for bitmap displays + +https://www.x.org # Available modules @@ -17,16 +21,16 @@ To start using X11, load one of these modules using a `module load` command like module load X11/20230603-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|X11/20230603-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|X11/20221110-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|X11/20220504-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|X11/20210802-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|X11/20210518-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|X11/20201008-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|X11/20200222-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|X11/20190717-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|X11/20190311-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|X11/20230603-GCCcore-12.3.0|x|x|x|x|x|x| +|X11/20221110-GCCcore-12.2.0|x|x|x|x|x|x| +|X11/20220504-GCCcore-11.3.0|x|x|x|x|x|x| +|X11/20210802-GCCcore-11.2.0|x|x|x|x|x|x| +|X11/20210518-GCCcore-10.3.0|x|x|x|x|x|x| +|X11/20201008-GCCcore-10.2.0|x|x|x|x|x|x| +|X11/20200222-GCCcore-9.3.0|x|x|x|x|x|x| +|X11/20190717-GCCcore-8.3.0|x|x|x|-|x|x| +|X11/20190311-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XCFun.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XCFun.md index 3a1c12bdbb99..c08eab29521a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XCFun.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XCFun.md @@ -6,6 +6,10 @@ hide: XCFun ===== + +Arbitrary order exchange-correlation functional library + +https://xcfun.readthedocs.io # Available modules @@ -14,12 +18,13 @@ The overview below shows which XCFun installations are available per HPC-UGent T To start using XCFun, load one of these modules using a `module load` command like: ```shell -module load XCFun/2.1.1-GCCcore-11.3.0 +module load XCFun/2.1.1-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|XCFun/2.1.1-GCCcore-11.3.0|-|x|x|x|x|x|x|x| -|XCFun/2.1.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|XCFun/2.1.1-GCCcore-12.2.0|x|x|x|x|x|x| +|XCFun/2.1.1-GCCcore-11.3.0|-|x|x|x|x|x| +|XCFun/2.1.1-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XCrySDen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XCrySDen.md index a5dae2dbdb53..34f7262f650e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XCrySDen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XCrySDen.md @@ -6,6 +6,10 @@ hide: XCrySDen ======== + +XCrySDen is a crystalline and molecular structure visualisation program aiming at display of isosurfacesand contours, which can be superimposed on crystalline structures and interactively rotated and manipulated.It also possesses some tools for analysis of properties in reciprocal space such as interactive selectionof k-paths in the Brillouin zone for the band-structure plots, and visualisation of Fermi surfaces. + +http://www.xcrysden.org/ # Available modules @@ -17,9 +21,9 @@ To start using XCrySDen, load one of these modules using a `module load` command module load XCrySDen/1.6.2-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|XCrySDen/1.6.2-intel-2022a|x|x|x|-|x|x|x|x| -|XCrySDen/1.6.2-foss-2022a|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|XCrySDen/1.6.2-intel-2022a|x|x|x|-|x|x| +|XCrySDen/1.6.2-foss-2022a|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XGBoost.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XGBoost.md index 461aa8940b4d..d885868b353d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XGBoost.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XGBoost.md @@ -6,6 +6,10 @@ hide: XGBoost ======= + +XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable. + +https://github.com/dmlc/xgboost # Available modules @@ -17,9 +21,9 @@ To start using XGBoost, load one of these modules using a `module load` command module load XGBoost/1.7.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|XGBoost/1.7.2-foss-2022a-CUDA-11.7.0|x|-|-|-|-|-|-|-| -|XGBoost/1.7.2-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|XGBoost/1.7.2-foss-2022a-CUDA-11.7.0|x|-|-|-|-|-| +|XGBoost/1.7.2-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XML-Compile.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XML-Compile.md index 6b459177c69c..05c5737b4a44 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XML-Compile.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XML-Compile.md @@ -6,6 +6,10 @@ hide: XML-Compile =========== + +Perl module for compilation based XML processing + +https://metacpan.org/pod/XML::Compile # Available modules @@ -14,11 +18,25 @@ The overview below shows which XML-Compile installations are available per HPC-U To start using XML-Compile, load one of these modules using a `module load` command like: ```shell -module load XML-Compile/1.63-GCCcore-11.2.0 +module load XML-Compile/1.63-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|XML-Compile/1.63-GCCcore-12.2.0|x|x|x|x|x|x| +|XML-Compile/1.63-GCCcore-11.2.0|x|x|x|-|x|x| + + +### XML-Compile/1.63-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +XML::Compile-1.63, XML::Compile::Cache-1.06, XML::Compile::SOAP-3.28, XML::Compile::WSDL11-3.08, XML::LibXML::Simple-1.01 + +### XML-Compile/1.63-GCCcore-11.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|XML-Compile/1.63-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +XML::Compile-1.63, XML::Compile::Cache-1.06, XML::Compile::SOAP-3.27, XML::Compile::WSDL11-3.08, XML::LibXML::Simple-1.01 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XML-LibXML.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XML-LibXML.md index 3d7e75b1cbac..3ca8d851b121 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XML-LibXML.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XML-LibXML.md @@ -6,6 +6,10 @@ hide: XML-LibXML ========== + +Perl binding for libxml2 + +https://metacpan.org/pod/distribution/XML-LibXML/LibXML.pod # Available modules @@ -14,15 +18,53 @@ The overview below shows which XML-LibXML installations are available per HPC-UG To start using XML-LibXML, load one of these modules using a `module load` command like: ```shell -module load XML-LibXML/2.0207-GCCcore-11.3.0 +module load XML-LibXML/2.0208-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|XML-LibXML/2.0208-GCCcore-12.2.0|x|x|x|x|x|x| +|XML-LibXML/2.0207-GCCcore-11.3.0|x|x|x|x|x|x| +|XML-LibXML/2.0207-GCCcore-11.2.0|x|x|x|x|x|x| +|XML-LibXML/2.0206-GCCcore-10.2.0|-|x|x|x|x|x| +|XML-LibXML/2.0205-GCCcore-9.3.0|-|x|x|-|x|x| +|XML-LibXML/2.0201-GCCcore-8.3.0|-|x|x|-|x|x| + + +### XML-LibXML/2.0208-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +Alien::Base-2.80, Alien::Build::Plugin::Download::GitLab-0.01, Alien::Libxml2-0.19, File::chdir-0.1011, XML::LibXML-2.0208 + +### XML-LibXML/2.0207-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +Alien::Base-2.68, Alien::Libxml2-0.17, File::chdir-0.1011, XML::LibXML-2.0207 + +### XML-LibXML/2.0207-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +Alien::Base-2.46, Alien::Libxml2-0.17, File::chdir-0.1010, XML::LibXML-2.0207 + +### XML-LibXML/2.0206-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +Alien::Base-2.38, Alien::Libxml2-0.17, File::chdir-0.1010, XML::LibXML-2.0206 + +### XML-LibXML/2.0205-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +Alien::Base-2.23, Alien::Libxml2-0.16, File::chdir-0.1010, XML::LibXML-2.0205 + +### XML-LibXML/2.0201-GCCcore-8.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|XML-LibXML/2.0207-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|XML-LibXML/2.0207-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|XML-LibXML/2.0206-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|XML-LibXML/2.0205-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|XML-LibXML/2.0201-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +Alien::Base-1.86, Alien::Libxml2-0.09, File::chdir-0.1010, XML::LibXML-2.0201 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XZ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XZ.md index 72644e8d2392..8e82e2c53fc3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XZ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XZ.md @@ -6,6 +6,10 @@ hide: XZ == + +xz: XZ utilities + +https://tukaani.org/xz/ # Available modules @@ -14,19 +18,20 @@ The overview below shows which XZ installations are available per HPC-UGent Tier To start using XZ, load one of these modules using a `module load` command like: ```shell -module load XZ/5.4.2-GCCcore-12.3.0 +module load XZ/5.4.4-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|XZ/5.4.2-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|XZ/5.2.7-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|XZ/5.2.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|XZ/5.2.5-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|XZ/5.2.5-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|XZ/5.2.5-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|XZ/5.2.5-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|XZ/5.2.4-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|XZ/5.2.4-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|XZ/5.4.4-GCCcore-13.2.0|x|x|x|x|x|x| +|XZ/5.4.2-GCCcore-12.3.0|x|x|x|x|x|x| +|XZ/5.2.7-GCCcore-12.2.0|x|x|x|x|x|x| +|XZ/5.2.5-GCCcore-11.3.0|x|x|x|x|x|x| +|XZ/5.2.5-GCCcore-11.2.0|x|x|x|x|x|x| +|XZ/5.2.5-GCCcore-10.3.0|x|x|x|x|x|x| +|XZ/5.2.5-GCCcore-10.2.0|x|x|x|x|x|x| +|XZ/5.2.5-GCCcore-9.3.0|x|x|x|x|x|x| +|XZ/5.2.4-GCCcore-8.3.0|x|x|x|x|x|x| +|XZ/5.2.4-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Xerces-C++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Xerces-C++.md index cb77233ac979..1d4a233dc4b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Xerces-C++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Xerces-C++.md @@ -6,6 +6,10 @@ hide: Xerces-C++ ========== + +Xerces-C++ is a validating XML parser written in a portablesubset of C++. Xerces-C++ makes it easy to give your application the ability toread and write XML data. A shared library is provided for parsing, generating,manipulating, and validating XML documents using the DOM, SAX, and SAX2APIs. + +https://xerces.apache.org/xerces-c/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which Xerces-C++ installations are available per HPC-UG To start using Xerces-C++, load one of these modules using a `module load` command like: ```shell -module load Xerces-C++/3.2.4-GCCcore-12.2.0 +module load Xerces-C++/3.2.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Xerces-C++/3.2.4-GCCcore-12.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Xerces-C++/3.2.4-GCCcore-12.3.0|x|x|x|x|x|x| +|Xerces-C++/3.2.4-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/XlsxWriter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/XlsxWriter.md index ba75c2ed4be0..e05ff3c61061 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/XlsxWriter.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/XlsxWriter.md @@ -6,6 +6,10 @@ hide: XlsxWriter ========== + +A Python module for creating Excel XLSX files + +https://xlsxwriter.readthedocs.io/ # Available modules @@ -14,14 +18,16 @@ The overview below shows which XlsxWriter installations are available per HPC-UG To start using XlsxWriter, load one of these modules using a `module load` command like: ```shell -module load XlsxWriter/3.1.2-GCCcore-12.2.0 +module load XlsxWriter/3.1.9-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|XlsxWriter/3.1.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|XlsxWriter/3.0.8-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|XlsxWriter/3.0.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|XlsxWriter/1.4.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|XlsxWriter/3.1.9-GCCcore-13.2.0|x|x|x|x|x|x| +|XlsxWriter/3.1.3-GCCcore-12.3.0|x|x|x|x|x|x| +|XlsxWriter/3.1.2-GCCcore-12.2.0|x|x|x|x|x|x| +|XlsxWriter/3.0.8-GCCcore-11.3.0|x|x|x|x|x|x| +|XlsxWriter/3.0.2-GCCcore-11.2.0|x|x|x|x|x|x| +|XlsxWriter/1.4.0-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Xvfb.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Xvfb.md index 024a482ca36a..147c74aaea9d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Xvfb.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Xvfb.md @@ -6,6 +6,10 @@ hide: Xvfb ==== + +Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory. + +https://www.x.org/releases/X11R7.6/doc/man/man1/Xvfb.1.xhtml # Available modules @@ -14,17 +18,18 @@ The overview below shows which Xvfb installations are available per HPC-UGent Ti To start using Xvfb, load one of these modules using a `module load` command like: ```shell -module load Xvfb/21.1.6-GCCcore-12.2.0 +module load Xvfb/21.1.8-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Xvfb/21.1.6-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|Xvfb/21.1.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Xvfb/1.20.13-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Xvfb/1.20.11-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|Xvfb/1.20.9-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Xvfb/1.20.9-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Xvfb/1.20.8-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Xvfb/21.1.8-GCCcore-12.3.0|x|x|x|x|x|x| +|Xvfb/21.1.6-GCCcore-12.2.0|x|x|x|x|x|x| +|Xvfb/21.1.3-GCCcore-11.3.0|x|x|x|x|x|x| +|Xvfb/1.20.13-GCCcore-11.2.0|x|x|x|x|x|x| +|Xvfb/1.20.11-GCCcore-10.3.0|x|x|x|x|x|x| +|Xvfb/1.20.9-GCCcore-10.2.0|x|x|x|x|x|x| +|Xvfb/1.20.9-GCCcore-9.3.0|-|x|x|-|x|x| +|Xvfb/1.20.8-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/YACS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/YACS.md index 0521a35a22b3..ff46b5fc05cd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/YACS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/YACS.md @@ -6,6 +6,10 @@ hide: YACS ==== + +YACS was created as a lightweight library to define andmanage system configurations, such as those commonly found in softwaredesigned for scientific experimentation. These "configurations"typically cover concepts like hyperparameters used in training a machinelearning model or configurable model hyperparameters, such as the depthof a convolutional neural network. + +https://github.com/rbgirshick/yacs # Available modules @@ -17,8 +21,8 @@ To start using YACS, load one of these modules using a `module load` command lik module load YACS/0.1.8-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|YACS/0.1.8-GCCcore-10.3.0|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|YACS/0.1.8-GCCcore-10.3.0|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/YANK.md b/mkdocs/docs/HPC/only/gent/available_software/detail/YANK.md index a3716a2ccade..f7ee111c10d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/YANK.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/YANK.md @@ -6,6 +6,10 @@ hide: YANK ==== + +A GPU-accelerated Python framework for exploring algorithms for alchemical free energy calculations + +http://getyank.org/ # Available modules @@ -17,8 +21,15 @@ To start using YANK, load one of these modules using a `module load` command lik module load YANK/0.25.2-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|YANK/0.25.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### YANK/0.25.2-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|YANK/0.25.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +Cerberus-1.3.2, clusterutils-0.3.1, docopt-0.6.2, latexcodec-2.0.1, lxml-4.6.1, mpiplus-0.0.1, numpydoc-1.1.0, openmoltools-0.8.7, oset-0.1.3, pdbfixer-1.6, pybtex-0.23.0, pybtex-docutils-0.2.2, six-1.15.0, sphinxcontrib-bibtex-1.0.0, YANK-0.25.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/YAXT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/YAXT.md index 7bfb039b0fc1..a5e938fe77a5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/YAXT.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/YAXT.md @@ -6,6 +6,10 @@ hide: YAXT ==== + +Yet Another eXchange Tool + +https://www.dkrz.de/redmine/projects/yaxt # Available modules @@ -17,9 +21,9 @@ To start using YAXT, load one of these modules using a `module load` command lik module load YAXT/0.9.1-gompi-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|YAXT/0.9.1-gompi-2021a|x|x|x|-|x|x|x|x| -|YAXT/0.6.2-iimpi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|YAXT/0.9.1-gompi-2021a|x|x|x|-|x|x| +|YAXT/0.6.2-iimpi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Yambo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Yambo.md index 82a62969ac29..8cde2ed56f2b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Yambo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Yambo.md @@ -6,6 +6,10 @@ hide: Yambo ===== + +Yambo is a FORTRAN/C code for Many-Body calculations in solid state and molecular physics. Yambo relies on the Kohn-Sham wavefunctions generated by two DFT public codes: abinit, and PWscf. + +http://www.yambo-code.org # Available modules @@ -17,8 +21,8 @@ To start using Yambo, load one of these modules using a `module load` command li module load Yambo/5.1.2-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Yambo/5.1.2-intel-2021b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Yambo/5.1.2-intel-2021b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Yasm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Yasm.md index 275b7eceb52b..7aa6c1e2b194 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Yasm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Yasm.md @@ -6,6 +6,10 @@ hide: Yasm ==== + +Yasm: Complete rewrite of the NASM assembler with BSD license + +https://www.tortall.net/projects/yasm/ # Available modules @@ -14,16 +18,18 @@ The overview below shows which Yasm installations are available per HPC-UGent Ti To start using Yasm, load one of these modules using a `module load` command like: ```shell -module load Yasm/1.3.0-GCCcore-11.3.0 +module load Yasm/1.3.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Yasm/1.3.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Yasm/1.3.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Yasm/1.3.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Yasm/1.3.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Yasm/1.3.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Yasm/1.3.0-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Yasm/1.3.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Yasm/1.3.0-GCCcore-12.2.0|x|x|x|x|x|x| +|Yasm/1.3.0-GCCcore-11.3.0|x|x|x|x|x|x| +|Yasm/1.3.0-GCCcore-11.2.0|x|x|x|x|x|x| +|Yasm/1.3.0-GCCcore-10.3.0|x|x|x|x|x|x| +|Yasm/1.3.0-GCCcore-10.2.0|x|x|x|x|x|x| +|Yasm/1.3.0-GCCcore-9.3.0|-|x|x|-|x|x| +|Yasm/1.3.0-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md index 847dd37ef6e2..d027ceb11db1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Z3.md @@ -6,6 +6,10 @@ hide: Z3 == + +Z3 is a theorem prover from Microsoft Research. + +https://github.com/Z3Prover/z3 # Available modules @@ -14,16 +18,24 @@ The overview below shows which Z3 installations are available per HPC-UGent Tier To start using Z3, load one of these modules using a `module load` command like: ```shell -module load Z3/4.12.2-GCCcore-12.3.0 +module load Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3|x|x|x|x|x|x| +|Z3/4.12.2-GCCcore-12.3.0|x|x|x|x|x|x| +|Z3/4.10.2-GCCcore-11.3.0|x|x|x|x|x|x| +|Z3/4.8.12-GCCcore-11.2.0|x|x|x|x|x|x| +|Z3/4.8.11-GCCcore-10.3.0|x|x|x|x|x|x| +|Z3/4.8.10-GCCcore-10.2.0|-|x|x|x|x|x| +|Z3/4.8.9-GCCcore-9.3.0|-|-|x|-|x|x| + + +### Z3/4.12.2-GCCcore-12.3.0-Python-3.11.3 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Z3/4.12.2-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|Z3/4.10.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Z3/4.8.12-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Z3/4.8.11-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Z3/4.8.10-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|Z3/4.8.9-GCCcore-9.3.0|-|-|x|-|x|x|x|x| +z3-solver-4.12.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Zeo++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Zeo++.md new file mode 100644 index 000000000000..2e29c8beeb31 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Zeo++.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +Zeo++ +===== + + +Zeo++ is a software package for analysis of crystalline porous materials. Zeo++ can be used to perform geometry-based analysis of structure and topology of the void space inside a material, to assemble or alternate structures as well as to generate structure representations to be used in structure similarity calculations. Zeo++ can be used to either analyze a single structure or perform high-throughput analysis of a large database. + +https://www.zeoplusplus.org/ +# Available modules + + +The overview below shows which Zeo++ installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using Zeo++, load one of these modules using a `module load` command like: + +```shell +module load Zeo++/0.3-intel-compilers-2023.1.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Zeo++/0.3-intel-compilers-2023.1.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ZeroMQ.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ZeroMQ.md index e17aa2272c4c..061ce2f5a380 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ZeroMQ.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ZeroMQ.md @@ -6,6 +6,10 @@ hide: ZeroMQ ====== + +ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems. + +https://www.zeromq.org/ # Available modules @@ -14,16 +18,18 @@ The overview below shows which ZeroMQ installations are available per HPC-UGent To start using ZeroMQ, load one of these modules using a `module load` command like: ```shell -module load ZeroMQ/4.3.4-GCCcore-11.3.0 +module load ZeroMQ/4.3.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ZeroMQ/4.3.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|ZeroMQ/4.3.4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|ZeroMQ/4.3.4-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|ZeroMQ/4.3.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|ZeroMQ/4.3.2-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|ZeroMQ/4.3.2-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ZeroMQ/4.3.4-GCCcore-12.3.0|x|x|x|x|x|x| +|ZeroMQ/4.3.4-GCCcore-12.2.0|x|x|x|x|x|x| +|ZeroMQ/4.3.4-GCCcore-11.3.0|x|x|x|x|x|x| +|ZeroMQ/4.3.4-GCCcore-11.2.0|x|x|x|x|x|x| +|ZeroMQ/4.3.4-GCCcore-10.3.0|x|x|x|x|x|x| +|ZeroMQ/4.3.3-GCCcore-10.2.0|x|x|x|x|x|x| +|ZeroMQ/4.3.2-GCCcore-9.3.0|x|x|x|x|x|x| +|ZeroMQ/4.3.2-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Zip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Zip.md index 6b0c6d7af46a..465f99f75d45 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Zip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Zip.md @@ -6,6 +6,10 @@ hide: Zip === + +Zip is a compression and file packaging/archive utility.Although highly compatible both with PKWARE's PKZIP and PKUNZIPutilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectiveshave been portability and other-than-MSDOS functionality + +http://www.info-zip.org/Zip.html # Available modules @@ -14,16 +18,18 @@ The overview below shows which Zip installations are available per HPC-UGent Tie To start using Zip, load one of these modules using a `module load` command like: ```shell -module load Zip/3.0-GCCcore-11.3.0 +module load Zip/3.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Zip/3.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|Zip/3.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|Zip/3.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|Zip/3.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|Zip/3.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|Zip/3.0-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Zip/3.0-GCCcore-12.3.0|x|x|x|x|x|x| +|Zip/3.0-GCCcore-12.2.0|x|x|x|x|x|x| +|Zip/3.0-GCCcore-11.3.0|x|x|x|x|x|x| +|Zip/3.0-GCCcore-11.2.0|x|x|x|x|x|x| +|Zip/3.0-GCCcore-10.3.0|x|x|x|x|x|x| +|Zip/3.0-GCCcore-10.2.0|x|x|x|x|x|x| +|Zip/3.0-GCCcore-9.3.0|-|x|x|-|x|x| +|Zip/3.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/Zopfli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/Zopfli.md index d82d8e62e9ee..366924976829 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/Zopfli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/Zopfli.md @@ -6,6 +6,10 @@ hide: Zopfli ====== + +Zopfli Compression Algorithm is a compression library programmed in C to performvery good, but slow, deflate or zlib compression. + +https://github.com/google/zopfli # Available modules @@ -17,8 +21,8 @@ To start using Zopfli, load one of these modules using a `module load` command l module load Zopfli/1.0.3-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|Zopfli/1.0.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|Zopfli/1.0.3-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/adjustText.md b/mkdocs/docs/HPC/only/gent/available_software/detail/adjustText.md index a33c1442ef4c..f0657d5a83dd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/adjustText.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/adjustText.md @@ -6,6 +6,10 @@ hide: adjustText ========== + +A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps. + +https://github.com/Phlya/adjustText # Available modules @@ -17,8 +21,8 @@ To start using adjustText, load one of these modules using a `module load` comma module load adjustText/0.7.3-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|adjustText/0.7.3-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|adjustText/0.7.3-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/aiohttp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/aiohttp.md index 2f95c21679b5..dbec9cc57aeb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/aiohttp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/aiohttp.md @@ -6,6 +6,10 @@ hide: aiohttp ======= + +Asynchronous HTTP client/server framework for asyncio and Python. + +https://github.com/aio-libs/aiohttp # Available modules @@ -14,12 +18,39 @@ The overview below shows which aiohttp installations are available per HPC-UGent To start using aiohttp, load one of these modules using a `module load` command like: ```shell -module load aiohttp/3.8.3-GCCcore-11.3.0 +module load aiohttp/3.8.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|aiohttp/3.8.5-GCCcore-12.3.0|x|x|x|x|-|x| +|aiohttp/3.8.5-GCCcore-12.2.0|x|x|x|x|x|x| +|aiohttp/3.8.3-GCCcore-11.3.0|x|x|x|x|x|x| +|aiohttp/3.8.1-GCCcore-11.2.0|x|x|x|-|x|x| + + +### aiohttp/3.8.5-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +aiohttp-3.8.5, aiosignal-1.3.1, async-timeout-4.0.2, frozenlist-1.4.0, multidict-6.0.4, yarl-1.9.2 + +### aiohttp/3.8.5-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +aiohttp-3.8.5, aioredis-2.0.1, aiosignal-1.3.1, async-timeout-4.0.2, frozenlist-1.4.0, multidict-6.0.4, yarl-1.9.2 + +### aiohttp/3.8.3-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +aiohttp-3.8.3, aiohttp-jinja2-1.5, aiohttp-session-2.12.0, aioredis-2.0.1, aiosignal-1.3.1, aiosignal-1.3.1, async-timeout-4.0.2, frozenlist-1.3.3, hiredis-2.0.0, multidict-6.0.2, yarl-1.8.1 + +### aiohttp/3.8.1-GCCcore-11.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|aiohttp/3.8.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|aiohttp/3.8.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +aiohttp-3.8.1, aiohttp-jinja2-1.5, aioredis-2.0.1, aiosignal-1.2.0, aiosignal-1.2.0, async-timeout-4.0.2, frozenlist-1.2.0, hiredis-2.0.0, multidict-5.2.0, yarl-1.7.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/alevin-fry.md b/mkdocs/docs/HPC/only/gent/available_software/detail/alevin-fry.md index 3c8bf259e2e0..8d5b7ed45087 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/alevin-fry.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/alevin-fry.md @@ -6,6 +6,10 @@ hide: alevin-fry ========== + +alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding. + +https://github.com/COMBINE-lab/alevin-fry # Available modules @@ -17,8 +21,8 @@ To start using alevin-fry, load one of these modules using a `module load` comma module load alevin-fry/0.4.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|alevin-fry/0.4.3-GCCcore-11.2.0|-|x|-|-|-|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|alevin-fry/0.4.3-GCCcore-11.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/alleleCount.md b/mkdocs/docs/HPC/only/gent/available_software/detail/alleleCount.md index e054c06452de..22aa5fc00fba 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/alleleCount.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/alleleCount.md @@ -6,6 +6,10 @@ hide: alleleCount =========== + +The alleleCount package primarily exists to prevent code duplicationbetween some other projects, specifically AscatNGS and Battenberg. As of v4 the perl code wraps the C implementation of allele counting code for BAM/CRAM processing. + +http://cancerit.github.io/alleleCount/ # Available modules @@ -14,11 +18,25 @@ The overview below shows which alleleCount installations are available per HPC-U To start using alleleCount, load one of these modules using a `module load` command like: ```shell -module load alleleCount/4.2.1-GCC-11.3.0 +module load alleleCount/4.3.0-GCC-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|alleleCount/4.3.0-GCC-12.2.0|x|x|x|x|x|x| +|alleleCount/4.2.1-GCC-11.3.0|x|x|x|x|x|x| + + +### alleleCount/4.3.0-GCC-12.2.0 + +This is a list of extensions included in the module: + +Const::Fast-0.014, Devel::Cover-1.40, Devel::Symdump-2.18, Pod::Coverage-0.23, Pod::Parser-1.66 + +### alleleCount/4.2.1-GCC-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|alleleCount/4.2.1-GCC-11.3.0|x|x|x|x|x|x|x|x| +Const::Fast-0.014, Devel::Cover-1.40, Devel::Symdump-2.18, Pod::Coverage-0.23, Pod::Parser-1.66 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/alleleIntegrator.md b/mkdocs/docs/HPC/only/gent/available_software/detail/alleleIntegrator.md index 461fd2345215..ccb58bf72cf1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/alleleIntegrator.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/alleleIntegrator.md @@ -6,6 +6,10 @@ hide: alleleIntegrator ================ + +R package to generate allele specific counts for scRNA data and use it to identify cancer cells + +https://github.com/constantAmateur/alleleIntegrator # Available modules @@ -14,11 +18,25 @@ The overview below shows which alleleIntegrator installations are available per To start using alleleIntegrator, load one of these modules using a `module load` command like: ```shell -module load alleleIntegrator/0.8.8-foss-2022a-R-4.2.1 +module load alleleIntegrator/0.8.8-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|alleleIntegrator/0.8.8-foss-2022b-R-4.2.2|x|x|x|x|x|x| +|alleleIntegrator/0.8.8-foss-2022a-R-4.2.1|x|x|x|x|x|x| + + +### alleleIntegrator/0.8.8-foss-2022b-R-4.2.2 + +This is a list of extensions included in the module: + +alleleIntegrator-0.8.8, grr-0.9.5, Matrix.utils-0.9.8 + +### alleleIntegrator/0.8.8-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|alleleIntegrator/0.8.8-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +alleleIntegrator-0.8.8, grr-0.9.5, Matrix.utils-0.9.8 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/alsa-lib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/alsa-lib.md new file mode 100644 index 000000000000..2f4807481d76 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/alsa-lib.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +alsa-lib +======== + + +The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system. + +https://www.alsa-project.org +# Available modules + + +The overview below shows which alsa-lib installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using alsa-lib, load one of these modules using a `module load` command like: + +```shell +module load alsa-lib/1.2.8-GCCcore-11.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|alsa-lib/1.2.8-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/anadama2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/anadama2.md new file mode 100644 index 000000000000..9af9e0cac98c --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/anadama2.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +anadama2 +======== + + +AnADAMA2 is the next generation of AnADAMA(Another Automated Data Analysis Management Application). AnADAMA is a tool tocreate reproducible workflows and execute them efficiently. + +http://huttenhower.sph.harvard.edu/anadama2 +# Available modules + + +The overview below shows which anadama2 installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using anadama2, load one of these modules using a `module load` command like: + +```shell +module load anadama2/0.10.0-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|anadama2/0.10.0-foss-2022a|x|x|x|x|x|x| + + +### anadama2/0.10.0-foss-2022a + +This is a list of extensions included in the module: + +anadama2-0.10.0, cloudpickle-2.2.1, Markdown-3.4.1, Pweave-0.30.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/angsd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/angsd.md index 036bb7d824d8..4c98b3d2803f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/angsd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/angsd.md @@ -6,6 +6,10 @@ hide: angsd ===== + +Program for analysing NGS data. + +http://www.popgen.dk/angsd # Available modules @@ -17,8 +21,8 @@ To start using angsd, load one of these modules using a `module load` command li module load angsd/0.940-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|angsd/0.940-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|angsd/0.940-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/anndata.md b/mkdocs/docs/HPC/only/gent/available_software/detail/anndata.md index fc490f2321f0..76cc0f155d2d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/anndata.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/anndata.md @@ -6,6 +6,10 @@ hide: anndata ======= + +anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray + +https://github.com/scverse/anndata # Available modules @@ -14,11 +18,32 @@ The overview below shows which anndata installations are available per HPC-UGent To start using anndata, load one of these modules using a `module load` command like: ```shell -module load anndata/0.8.0-foss-2022a +module load anndata/0.10.5.post1-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|anndata/0.10.5.post1-foss-2023a|x|x|x|x|x|x| +|anndata/0.9.2-foss-2021a|x|x|x|x|x|x| +|anndata/0.8.0-foss-2022a|x|x|x|x|x|x| + + +### anndata/0.10.5.post1-foss-2023a + +This is a list of extensions included in the module: + +anndata-0.10.5.post1, array_api_compat-1.4.1, natsort-8.4.0, packaging-23.2 + +### anndata/0.9.2-foss-2021a + +This is a list of extensions included in the module: + +anndata-0.9.2, natsort-8.4.0, setuptools-68.1.2 + +### anndata/0.8.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|anndata/0.8.0-foss-2022a|x|x|x|x|x|x|x|x| +anndata-0.8.0, natsort-8.3.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ant.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ant.md index bed0e06aff6c..bde8288a7d75 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ant.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ant.md @@ -6,6 +6,10 @@ hide: ant === + +Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications. + +https://ant.apache.org/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which ant installations are available per HPC-UGent Tie To start using ant, load one of these modules using a `module load` command like: ```shell -module load ant/1.10.12-Java-11 +module load ant/1.10.12-Java-17 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ant/1.10.12-Java-11|x|x|x|x|x|x|x|x| -|ant/1.10.11-Java-11|x|x|x|-|x|x|x|x| -|ant/1.10.9-Java-11|x|x|x|x|x|x|x|x| -|ant/1.10.8-Java-11|-|x|x|-|x|x|x|x| -|ant/1.10.7-Java-11|-|x|x|-|x|x|-|x| -|ant/1.10.6-Java-1.8|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ant/1.10.12-Java-17|x|x|x|x|x|x| +|ant/1.10.12-Java-11|x|x|x|x|x|x| +|ant/1.10.11-Java-11|x|x|x|-|x|x| +|ant/1.10.9-Java-11|x|x|x|x|x|x| +|ant/1.10.8-Java-11|-|x|x|-|x|x| +|ant/1.10.7-Java-11|-|x|x|-|x|x| +|ant/1.10.6-Java-1.8|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/antiSMASH.md b/mkdocs/docs/HPC/only/gent/available_software/detail/antiSMASH.md index b58a67acaace..f330419e353e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/antiSMASH.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/antiSMASH.md @@ -6,6 +6,10 @@ hide: antiSMASH ========= + +antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. + +https://github.com/antismash/antismash # Available modules @@ -17,10 +21,29 @@ To start using antiSMASH, load one of these modules using a `module load` comman module load antiSMASH/6.0.1-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|antiSMASH/6.0.1-foss-2020b|-|x|x|x|x|x| +|antiSMASH/5.2.0-foss-2020b|-|x|x|x|x|x| +|antiSMASH/5.1.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### antiSMASH/6.0.1-foss-2020b + +This is a list of extensions included in the module: + +antiSMASH-6.0.1, bcbio-gff-0.6.8, helperlibs-0.2.1, pyScss-1.3.7, pysvg-py3-0.2.2.post3 + +### antiSMASH/5.2.0-foss-2020b + +This is a list of extensions included in the module: + +antiSMASH-5.2.0, bcbio-gff-0.6.6, helperlibs-0.2.1, pyScss-1.3.7, pysvg-py3-0.2.2.post3 + +### antiSMASH/5.1.2-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|antiSMASH/6.0.1-foss-2020b|-|x|x|x|x|x|x|x| -|antiSMASH/5.2.0-foss-2020b|-|x|x|x|x|x|x|x| -|antiSMASH/5.1.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +antiSMASH-5.1.2, bcbio-gff-0.6.6, helperlibs-0.1.11, pyScss-1.3.7, pysvg-py3-0.2.2.post3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/anvio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/anvio.md index 1e36359f8105..a8ae457d79c3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/anvio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/anvio.md @@ -6,6 +6,10 @@ hide: anvio ===== + +An analysis and visualization platform for 'omics data. + +https://merenlab.org/software/anvio/ # Available modules @@ -14,11 +18,25 @@ The overview below shows which anvio installations are available per HPC-UGent T To start using anvio, load one of these modules using a `module load` command like: ```shell -module load anvio/6.1-intel-2019b-Python-3.7.4 +module load anvio/8-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|anvio/8-foss-2022b|x|x|x|x|x|x| +|anvio/6.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### anvio/8-foss-2022b + +This is a list of extensions included in the module: + +anvio-8, asgiref-3.7.2, bottle-0.12.25, colored-2.2.4, Django-5.0.1, illumina-utils-2.13, mistune-3.0.2, multiprocess-0.70.15, Paste-3.7.1, plotext-5.2.8, pyani-0.2.12, rich_argparse-1.4.0, sqlparse-0.4.4 + +### anvio/6.1-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|anvio/6.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +anvio-6.1, appdirs-1.4.3, bottle-0.12.17, cheroot-8.2.1, CherryPy-18.4.0, colored-1.4.0, ConfigArgParse-0.15.1, datrie-0.8, Django-2.2.7, ete3-3.1.1, gitdb2-2.0.6, GitPython-3.0.5, illumina-utils-2.6, importlib_metadata-0.23, jaraco.functools-2.0, jsonschema-3.2.0, mistune-0.8.4, more-itertools-7.2.0, patsy-0.5.1, portend-2.6, pyani-0.2.9, pyrsistent-0.15.6, python-Levenshtein-0.12.0, PyYAML-5.1.2, ratelimiter-1.2.0.post0, seaborn-0.9.0, smmap2-2.0.5, snakemake-5.8.1, sqlparse-0.3.0, statsmodels-0.10.1, tempora-1.14.1, wrapt-1.11.2, zc.lockfile-2.0, zipp-0.6.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md index f2dc19937c35..e2d56d01d150 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/any2fasta.md @@ -6,6 +6,10 @@ hide: any2fasta ========= + +Convert various sequence formats to FASTA + +https://github.com/tseemann/any2fasta # Available modules @@ -17,9 +21,9 @@ To start using any2fasta, load one of these modules using a `module load` comman module load any2fasta/0.4.2-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|any2fasta/0.4.2-GCCcore-10.2.0|-|x|x|-|x|x|x|x| -|any2fasta/0.4.2-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|any2fasta/0.4.2-GCCcore-10.2.0|-|x|x|-|x|x| +|any2fasta/0.4.2-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/apex.md b/mkdocs/docs/HPC/only/gent/available_software/detail/apex.md index 111002616012..bfc151b93e17 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/apex.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/apex.md @@ -6,6 +6,10 @@ hide: apex ==== + +A PyTorch Extension: Tools for easy mixed precision and distributed training in Pytorch + +https://github.com/nvidia/apex # Available modules @@ -17,8 +21,8 @@ To start using apex, load one of these modules using a `module load` command lik module load apex/20210420-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|apex/20210420-fosscuda-2020b|-|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|apex/20210420-fosscuda-2020b|-|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/archspec.md b/mkdocs/docs/HPC/only/gent/available_software/detail/archspec.md index 1a8103e2781c..474dc0ec7574 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/archspec.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/archspec.md @@ -6,6 +6,10 @@ hide: archspec ======== + +A library for detecting, labeling, and reasoning about microarchitectures + +https://github.com/archspec/archspec # Available modules @@ -17,11 +21,18 @@ To start using archspec, load one of these modules using a `module load` command module load archspec/0.1.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|archspec/0.1.3-GCCcore-11.2.0|x|x|x|-|x|x| +|archspec/0.1.2-GCCcore-10.3.0|-|x|x|-|x|x| +|archspec/0.1.0-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| +|archspec/0.1.0-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| + + +### archspec/0.1.0-GCCcore-8.3.0-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|archspec/0.1.3-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|archspec/0.1.2-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|archspec/0.1.0-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| -|archspec/0.1.0-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|-|x| +archspec-0.1.0, six-1.15.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/argtable.md b/mkdocs/docs/HPC/only/gent/available_software/detail/argtable.md index 33283f3b4fbf..af401c0d4e8e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/argtable.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/argtable.md @@ -6,6 +6,10 @@ hide: argtable ======== + +Argtable is an ANSI C library for parsing GNU style command line options with a minimum of fuss. + +http://argtable.sourceforge.net/ # Available modules @@ -17,8 +21,8 @@ To start using argtable, load one of these modules using a `module load` command module load argtable/2.13-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|argtable/2.13-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|argtable/2.13-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/aria2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/aria2.md index d3c1213f9aed..01dadaeef307 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/aria2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/aria2.md @@ -6,6 +6,10 @@ hide: aria2 ===== + +aria2 is a lightweight multi-protocol & multi-source command-line download utility. + +https://aria2.github.io # Available modules @@ -17,8 +21,8 @@ To start using aria2, load one of these modules using a `module load` command li module load aria2/1.35.0-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|aria2/1.35.0-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|aria2/1.35.0-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/arpack-ng.md b/mkdocs/docs/HPC/only/gent/available_software/detail/arpack-ng.md index b60eba694ea0..3a07a7383ed5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/arpack-ng.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/arpack-ng.md @@ -6,6 +6,10 @@ hide: arpack-ng ========= + +ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems. + +https://github.com/opencollab/arpack-ng # Available modules @@ -14,16 +18,17 @@ The overview below shows which arpack-ng installations are available per HPC-UGe To start using arpack-ng, load one of these modules using a `module load` command like: ```shell -module load arpack-ng/3.8.0-foss-2022b +module load arpack-ng/3.9.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|arpack-ng/3.8.0-foss-2022b|x|x|x|x|x|x|x|x| -|arpack-ng/3.8.0-foss-2022a|x|x|x|x|x|x|x|x| -|arpack-ng/3.8.0-foss-2021b|x|x|x|x|x|x|x|x| -|arpack-ng/3.8.0-foss-2021a|x|x|x|x|x|x|x|x| -|arpack-ng/3.7.0-intel-2020a|-|x|x|-|x|x|x|x| -|arpack-ng/3.7.0-foss-2019b|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|arpack-ng/3.9.0-foss-2023a|x|x|x|x|x|x| +|arpack-ng/3.8.0-foss-2022b|x|x|x|x|x|x| +|arpack-ng/3.8.0-foss-2022a|x|x|x|x|x|x| +|arpack-ng/3.8.0-foss-2021b|x|x|x|x|x|x| +|arpack-ng/3.8.0-foss-2021a|x|x|x|x|x|x| +|arpack-ng/3.7.0-intel-2020a|-|x|x|-|x|x| +|arpack-ng/3.7.0-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/arrow-R.md b/mkdocs/docs/HPC/only/gent/available_software/detail/arrow-R.md index 423e55d85440..272519c6927a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/arrow-R.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/arrow-R.md @@ -6,6 +6,10 @@ hide: arrow-R ======= + +R interface to the Apache Arrow C++ library + +https://cran.r-project.org/web/packages/arrow # Available modules @@ -14,15 +18,16 @@ The overview below shows which arrow-R installations are available per HPC-UGent To start using arrow-R, load one of these modules using a `module load` command like: ```shell -module load arrow-R/11.0.0.3-foss-2022b-R-4.2.2 +module load arrow-R/14.0.0.2-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|arrow-R/11.0.0.3-foss-2022b-R-4.2.2|x|x|x|x|x|x|x|x| -|arrow-R/8.0.0-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| -|arrow-R/6.0.0.2-foss-2021b-R-4.2.0|x|x|x|x|x|x|x|x| -|arrow-R/6.0.0.2-foss-2021b-R-4.1.2|x|x|x|x|x|x|x|x| -|arrow-R/6.0.0.2-foss-2021a-R-4.1.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|arrow-R/14.0.0.2-foss-2023a-R-4.3.2|x|x|x|x|x|x| +|arrow-R/11.0.0.3-foss-2022b-R-4.2.2|x|x|x|x|x|x| +|arrow-R/8.0.0-foss-2022a-R-4.2.1|x|x|x|x|x|x| +|arrow-R/6.0.0.2-foss-2021b-R-4.2.0|x|x|x|x|x|x| +|arrow-R/6.0.0.2-foss-2021b-R-4.1.2|x|x|x|x|x|x| +|arrow-R/6.0.0.2-foss-2021a-R-4.1.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/arrow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/arrow.md index 2dee65017159..8d3fc2415dde 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/arrow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/arrow.md @@ -6,6 +6,10 @@ hide: arrow ===== + +R interface to the Apache Arrow C++ library + +https://cran.r-project.org/web/packages/arrow # Available modules @@ -17,8 +21,8 @@ To start using arrow, load one of these modules using a `module load` command li module load arrow/0.17.1-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|arrow/0.17.1-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|arrow/0.17.1-foss-2020a-R-4.0.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-atk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-atk.md index d730f15110fc..31b76c7d242c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-atk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-atk.md @@ -6,6 +6,10 @@ hide: at-spi2-atk =========== + +AT-SPI 2 toolkit bridge + +https://wiki.gnome.org/Accessibility # Available modules @@ -14,16 +18,17 @@ The overview below shows which at-spi2-atk installations are available per HPC-U To start using at-spi2-atk, load one of these modules using a `module load` command like: ```shell -module load at-spi2-atk/2.38.0-GCCcore-12.2.0 +module load at-spi2-atk/2.38.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|at-spi2-atk/2.38.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|at-spi2-atk/2.38.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|at-spi2-atk/2.38.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|at-spi2-atk/2.38.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|at-spi2-atk/2.38.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|at-spi2-atk/2.34.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|at-spi2-atk/2.38.0-GCCcore-12.3.0|x|x|x|x|x|x| +|at-spi2-atk/2.38.0-GCCcore-12.2.0|x|x|x|x|x|x| +|at-spi2-atk/2.38.0-GCCcore-11.3.0|x|x|x|x|x|x| +|at-spi2-atk/2.38.0-GCCcore-11.2.0|x|x|x|x|x|x| +|at-spi2-atk/2.38.0-GCCcore-10.3.0|x|x|x|-|x|x| +|at-spi2-atk/2.38.0-GCCcore-10.2.0|x|x|x|x|x|x| +|at-spi2-atk/2.34.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-core.md b/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-core.md index e8881cf5f3d4..4d555792b8dd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-core.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/at-spi2-core.md @@ -6,6 +6,10 @@ hide: at-spi2-core ============ + +Assistive Technology Service Provider Interface. + +https://wiki.gnome.org/Accessibility # Available modules @@ -14,16 +18,17 @@ The overview below shows which at-spi2-core installations are available per HPC- To start using at-spi2-core, load one of these modules using a `module load` command like: ```shell -module load at-spi2-core/2.46.0-GCCcore-12.2.0 +module load at-spi2-core/2.49.90-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|at-spi2-core/2.46.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|at-spi2-core/2.44.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|at-spi2-core/2.40.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|at-spi2-core/2.40.2-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|at-spi2-core/2.38.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|at-spi2-core/2.34.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|at-spi2-core/2.49.90-GCCcore-12.3.0|x|x|x|x|x|x| +|at-spi2-core/2.46.0-GCCcore-12.2.0|x|x|x|x|x|x| +|at-spi2-core/2.44.1-GCCcore-11.3.0|x|x|x|x|x|x| +|at-spi2-core/2.40.3-GCCcore-11.2.0|x|x|x|x|x|x| +|at-spi2-core/2.40.2-GCCcore-10.3.0|x|x|x|-|x|x| +|at-spi2-core/2.38.0-GCCcore-10.2.0|x|x|x|x|x|x| +|at-spi2-core/2.34.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/atools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/atools.md index 3aa0f0c0dd69..4d56568c86e1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/atools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/atools.md @@ -6,6 +6,10 @@ hide: atools ====== + +Tools to make using job arrays a lot more convenient. + +https://github.com/gjbex/atools # Available modules @@ -17,9 +21,9 @@ To start using atools, load one of these modules using a `module load` command l module load atools/1.5.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|atools/1.5.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|atools/1.4.6-GCCcore-8.3.0-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|atools/1.5.1-GCCcore-11.2.0|x|x|x|-|x|x| +|atools/1.4.6-GCCcore-8.3.0-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/attr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/attr.md index b0a80488a6b6..2af3085dc6d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/attr.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/attr.md @@ -6,6 +6,10 @@ hide: attr ==== + +Commands for Manipulating Filesystem Extended Attributes + +https://savannah.nongnu.org/projects/attr # Available modules @@ -14,11 +18,12 @@ The overview below shows which attr installations are available per HPC-UGent Ti To start using attr, load one of these modules using a `module load` command like: ```shell -module load attr/2.5.1-GCCcore-11.2.0 +module load attr/2.5.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|attr/2.5.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|attr/2.5.1-GCCcore-11.3.0|x|x|x|x|x|x| +|attr/2.5.1-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict.md b/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict.md index ad11cf846307..90b3d439385c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict.md @@ -6,6 +6,10 @@ hide: attrdict ======== + +AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes. + +https://github.com/bcj/AttrDict # Available modules @@ -17,8 +21,8 @@ To start using attrdict, load one of these modules using a `module load` command module load attrdict/2.0.1-GCCcore-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|attrdict/2.0.1-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|attrdict/2.0.1-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict3.md index bdfcc1f8caee..4dad1f25728b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/attrdict3.md @@ -6,6 +6,10 @@ hide: attrdict3 ========= + +AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes. + +https://github.com/pirofti/AttrDict3 # Available modules @@ -17,8 +21,15 @@ To start using attrdict3, load one of these modules using a `module load` comman module load attrdict3/2.0.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|attrdict3/2.0.2-GCCcore-11.2.0|x|x|x|x|x|x| + + +### attrdict3/2.0.2-GCCcore-11.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|attrdict3/2.0.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +attrdict3-2.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/augur.md b/mkdocs/docs/HPC/only/gent/available_software/detail/augur.md index 454dae821927..cb44cf3079f6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/augur.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/augur.md @@ -6,6 +6,10 @@ hide: augur ===== + +Pipeline components for real-time phylodynamic analysis + +https://github.com/nextstrain/augur # Available modules @@ -17,8 +21,15 @@ To start using augur, load one of these modules using a `module load` command li module load augur/7.0.2-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|augur/7.0.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### augur/7.0.2-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|augur/7.0.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +appdirs-1.4.3, augur-7.0.2, bcbio-gff-0.6.6, ConfigArgParse-1.2.1, datrie-0.8.2, importlib-metadata-1.6.0, ipython-genutils-0.2.0, jsonschema-3.2.0, jupyter-core-4.6.3, nbformat-5.0.5, packaging-20.3, phylo-treetime-0.7.5, pyrsistent-0.16.0, ratelimiter-1.2.0.post0, snakemake-5.10.0, toposort-1.5, traitlets-4.3.3, wrapt-1.12.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/autopep8.md b/mkdocs/docs/HPC/only/gent/available_software/detail/autopep8.md new file mode 100644 index 000000000000..2d748698cc5f --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/autopep8.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +autopep8 +======== + + +A tool that automatically formats Python code to conform to the PEP 8 style guide. + +https://github.com/hhatto/autopep8 +# Available modules + + +The overview below shows which autopep8 installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using autopep8, load one of these modules using a `module load` command like: + +```shell +module load autopep8/2.0.4-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|autopep8/2.0.4-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/awscli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/awscli.md index a5eb8a24ccf1..1bb51b873a3a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/awscli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/awscli.md @@ -6,6 +6,10 @@ hide: awscli ====== + +Universal Command Line Environment for AWS + +https://pypi.python.org/pypi/awscli # Available modules @@ -17,8 +21,15 @@ To start using awscli, load one of these modules using a `module load` command l module load awscli/2.11.21-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|awscli/2.11.21-GCCcore-11.3.0|x|x|x|x|x|x| + + +### awscli/2.11.21-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|awscli/2.11.21-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +awscli-2.11.21, awscrt-0.16.16, botocore-1.29.138, distro-1.8.0, jmespath-1.0.1, prompt-toolkit-3.0.38, s3transfer-0.6.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/babl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/babl.md index 9c800111a355..9182a88aa649 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/babl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/babl.md @@ -6,6 +6,10 @@ hide: babl ==== + +babl is pixel encoding and color space conversion engine in C + +https://www.gegl.org/babl # Available modules @@ -17,8 +21,8 @@ To start using babl, load one of these modules using a `module load` command lik module load babl/0.1.86-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|babl/0.1.86-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|babl/0.1.86-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bam-readcount.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bam-readcount.md index d5e64564672a..61bfdefbb8ff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bam-readcount.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bam-readcount.md @@ -6,6 +6,10 @@ hide: bam-readcount ============= + +Count DNA sequence reads in BAM files + +https://github.com/genome/bam-readcount # Available modules @@ -17,8 +21,8 @@ To start using bam-readcount, load one of these modules using a `module load` co module load bam-readcount/0.8.0-GCC-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bam-readcount/0.8.0-GCC-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bam-readcount/0.8.0-GCC-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bamFilters.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bamFilters.md index 453bc9e8a58a..ff6e225a96c3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bamFilters.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bamFilters.md @@ -6,6 +6,10 @@ hide: bamFilters ========== + +A utility tool to filter alignments from bam files, using identity percent, low complexity and read coverage. + +https://github.com/institut-de-genomique/bamFilters # Available modules @@ -17,8 +21,8 @@ To start using bamFilters, load one of these modules using a `module load` comma module load bamFilters/2022-06-30-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bamFilters/2022-06-30-GCC-11.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bamFilters/2022-06-30-GCC-11.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/barrnap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/barrnap.md index fc66d89c48e4..34b74be5f6ee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/barrnap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/barrnap.md @@ -6,6 +6,10 @@ hide: barrnap ======= + +Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. + +https://github.com/tseemann/barrnap # Available modules @@ -17,9 +21,9 @@ To start using barrnap, load one of these modules using a `module load` command module load barrnap/0.9-gompi-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|barrnap/0.9-gompi-2021b|x|x|x|-|x|x|x|x| -|barrnap/0.9-gompi-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|barrnap/0.9-gompi-2021b|x|x|x|-|x|x| +|barrnap/0.9-gompi-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/basemap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/basemap.md index 82272f086aff..223eee2c62c1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/basemap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/basemap.md @@ -6,6 +6,10 @@ hide: basemap ======= + +The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python + +http://matplotlib.org/basemap/ # Available modules @@ -14,11 +18,25 @@ The overview below shows which basemap installations are available per HPC-UGent To start using basemap, load one of these modules using a `module load` command like: ```shell -module load basemap/1.2.2-foss-2020a-Python-3.8.2 +module load basemap/1.3.9-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|basemap/1.3.9-foss-2023a|x|x|x|x|x|x| +|basemap/1.2.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### basemap/1.3.9-foss-2023a + +This is a list of extensions included in the module: + +basemap-1.3.9, basemap_data-1.3.9, pyshp-2.3.1 + +### basemap/1.2.2-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|basemap/1.2.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|-|x| +basemap-1.2.2, pyshp-2.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bcbio-gff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bcbio-gff.md index fec54beab273..f6fb17776e0e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bcbio-gff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bcbio-gff.md @@ -6,6 +6,10 @@ hide: bcbio-gff ========= + +Read and write Generic Feature Format (GFF) with Biopython integration. + +https://github.com/chapmanb/bcbb/tree/master/gff # Available modules @@ -14,11 +18,12 @@ The overview below shows which bcbio-gff installations are available per HPC-UGe To start using bcbio-gff, load one of these modules using a `module load` command like: ```shell -module load bcbio-gff/0.7.0-foss-2022a +module load bcbio-gff/0.7.0-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bcbio-gff/0.7.0-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bcbio-gff/0.7.0-foss-2022b|x|x|x|x|x|x| +|bcbio-gff/0.7.0-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bcgTree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bcgTree.md index 83449ada9691..c957641c4467 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bcgTree.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bcgTree.md @@ -6,6 +6,10 @@ hide: bcgTree ======= + +Automatized phylogenetic tree building from bacterial core genomes. + +https://github.com/molbiodiv/bcgTree # Available modules @@ -17,8 +21,8 @@ To start using bcgTree, load one of these modules using a `module load` command module load bcgTree/1.2.0-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bcgTree/1.2.0-intel-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bcgTree/1.2.0-intel-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bcl-convert.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bcl-convert.md index 15927e9229d9..9e0194c2882f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bcl-convert.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bcl-convert.md @@ -6,6 +6,10 @@ hide: bcl-convert =========== + +The Illumina BCL Convert v4.0 is a standalone local software app that converts the Binary Base Call (BCL) files produced by Illumina sequencing systems to FASTQ files. + +https://support.illumina.com/sequencing/sequencing_software/bcl-convert.html # Available modules @@ -17,8 +21,8 @@ To start using bcl-convert, load one of these modules using a `module load` comm module load bcl-convert/4.0.3-2el7.x86_64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bcl-convert/4.0.3-2el7.x86_64|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bcl-convert/4.0.3-2el7.x86_64|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bcl2fastq2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bcl2fastq2.md index 1e1b3655b34b..640eee5e1b2d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bcl2fastq2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bcl2fastq2.md @@ -6,6 +6,10 @@ hide: bcl2fastq2 ========== + +bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis. + +https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html # Available modules @@ -17,9 +21,9 @@ To start using bcl2fastq2, load one of these modules using a `module load` comma module load bcl2fastq2/2.20.0-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bcl2fastq2/2.20.0-GCC-11.2.0|x|x|x|-|x|x|x|x| -|bcl2fastq2/2.20.0-GCC-8.3.0|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bcl2fastq2/2.20.0-GCC-11.2.0|x|x|x|-|x|x| +|bcl2fastq2/2.20.0-GCC-8.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/beagle-lib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/beagle-lib.md index 383072cc5360..e1962b6e2649 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/beagle-lib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/beagle-lib.md @@ -6,6 +6,10 @@ hide: beagle-lib ========== + +beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. + +https://github.com/beagle-dev/beagle-lib # Available modules @@ -17,11 +21,11 @@ To start using beagle-lib, load one of these modules using a `module load` comma module load beagle-lib/4.0.0-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|beagle-lib/4.0.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|beagle-lib/3.1.2-gcccuda-2019b|x|-|-|-|x|-|-|-| -|beagle-lib/3.1.2-GCC-11.3.0|x|x|x|-|x|x|x|x| -|beagle-lib/3.1.2-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|beagle-lib/4.0.0-GCC-11.3.0|x|x|x|x|x|x| +|beagle-lib/3.1.2-gcccuda-2019b|x|-|-|-|x|-| +|beagle-lib/3.1.2-GCC-11.3.0|x|x|x|-|x|x| +|beagle-lib/3.1.2-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/binutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/binutils.md index 9483232fb34f..3e968f49011d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/binutils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/binutils.md @@ -6,6 +6,10 @@ hide: binutils ======== + +binutils: GNU binary utilities + +https://directory.fsf.org/project/binutils/ # Available modules @@ -14,30 +18,31 @@ The overview below shows which binutils installations are available per HPC-UGen To start using binutils, load one of these modules using a `module load` command like: ```shell -module load binutils/2.40-GCCcore-12.3.0 +module load binutils/2.40-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|binutils/2.40-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|binutils/2.40|x|x|x|x|x|x|x|x| -|binutils/2.39-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|binutils/2.39|x|x|x|x|x|x|x|x| -|binutils/2.38-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|binutils/2.38|x|x|x|x|x|x|x|x| -|binutils/2.37-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|binutils/2.37|x|x|x|x|x|x|x|x| -|binutils/2.36.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|binutils/2.36.1|x|x|x|x|x|x|x|x| -|binutils/2.35-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|binutils/2.35|x|x|x|x|x|x|x|x| -|binutils/2.34-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|binutils/2.34|x|x|x|x|x|x|x|x| -|binutils/2.32-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|binutils/2.32|x|x|x|x|x|x|x|x| -|binutils/2.31.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|binutils/2.31.1|-|x|-|-|-|x|x|x| -|binutils/2.30|-|-|-|-|-|x|-|x| -|binutils/2.28|-|-|-|-|-|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|binutils/2.40-GCCcore-13.2.0|x|x|x|x|x|x| +|binutils/2.40-GCCcore-12.3.0|x|x|x|x|x|x| +|binutils/2.40|x|x|x|x|x|x| +|binutils/2.39-GCCcore-12.2.0|x|x|x|x|x|x| +|binutils/2.39|x|x|x|x|x|x| +|binutils/2.38-GCCcore-11.3.0|x|x|x|x|x|x| +|binutils/2.38|x|x|x|x|x|x| +|binutils/2.37-GCCcore-11.2.0|x|x|x|x|x|x| +|binutils/2.37|x|x|x|x|x|x| +|binutils/2.36.1-GCCcore-10.3.0|x|x|x|x|x|x| +|binutils/2.36.1|x|x|x|x|x|x| +|binutils/2.35-GCCcore-10.2.0|x|x|x|x|x|x| +|binutils/2.35|x|x|x|x|x|x| +|binutils/2.34-GCCcore-9.3.0|x|x|x|x|x|x| +|binutils/2.34|x|x|x|x|x|x| +|binutils/2.32-GCCcore-8.3.0|x|x|x|x|x|x| +|binutils/2.32|x|x|x|x|x|x| +|binutils/2.31.1-GCCcore-8.2.0|-|x|-|-|-|-| +|binutils/2.31.1|-|x|-|-|-|x| +|binutils/2.30|-|-|-|-|-|x| +|binutils/2.28|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/biobakery-workflows.md b/mkdocs/docs/HPC/only/gent/available_software/detail/biobakery-workflows.md new file mode 100644 index 000000000000..0e67e989c928 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/biobakery-workflows.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +biobakery-workflows +=================== + + +bioBakery workflows is a collection of workflows and tasks for executingcommon microbial community analyses using standardized, validated tools and parameters.Quality control and statistical summary reports are automatically generated for most datatypes, which include 16S amplicons, metagenomes, and metatranscriptomes. Workflows are rundirectly from the command line and tasks can be imported to create your own custom workflows.The workflows and tasks are built with AnADAMA2 which allows for parallel task execution locallyand in a grid compute environment. + +http://huttenhower.sph.harvard.edu/biobakery_workflows +# Available modules + + +The overview below shows which biobakery-workflows installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using biobakery-workflows, load one of these modules using a `module load` command like: + +```shell +module load biobakery-workflows/3.1-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|biobakery-workflows/3.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/biobambam2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/biobambam2.md index bb31a32e90ba..04f835d9e542 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/biobambam2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/biobambam2.md @@ -6,6 +6,10 @@ hide: biobambam2 ========== + +Tools for processing BAM files + +https://github.com/gt1/biobambam2 # Available modules @@ -14,11 +18,12 @@ The overview below shows which biobambam2 installations are available per HPC-UG To start using biobambam2, load one of these modules using a `module load` command like: ```shell -module load biobambam2/2.0.87-GCC-11.3.0 +module load biobambam2/2.0.185-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|biobambam2/2.0.87-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|biobambam2/2.0.185-GCC-12.3.0|x|x|x|x|x|x| +|biobambam2/2.0.87-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/biogeme.md b/mkdocs/docs/HPC/only/gent/available_software/detail/biogeme.md index 76ce585d1a4f..08589b5c865c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/biogeme.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/biogeme.md @@ -6,6 +6,10 @@ hide: biogeme ======= + +Biogeme is a open source Python package designed forthe maximum likelihood estimation of parametric models in general,with a special emphasis on discrete choice models. + +https://pypi.python.org/pypi/biogeme # Available modules @@ -17,9 +21,22 @@ To start using biogeme, load one of these modules using a `module load` command module load biogeme/3.2.10-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|biogeme/3.2.10-foss-2022a|x|x|x|-|x|x| +|biogeme/3.2.6-foss-2022a|x|x|x|-|x|x| + + +### biogeme/3.2.10-foss-2022a + +This is a list of extensions included in the module: + +biogeme-3.2.10, Unidecode-1.3.6 + +### biogeme/3.2.6-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|biogeme/3.2.10-foss-2022a|x|x|x|-|x|x|x|x| -|biogeme/3.2.6-foss-2022a|x|x|x|-|x|x|x|x| +biogeme-3.2.6, Unidecode-1.3.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/biom-format.md b/mkdocs/docs/HPC/only/gent/available_software/detail/biom-format.md index 887a0e135328..865268990026 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/biom-format.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/biom-format.md @@ -6,6 +6,10 @@ hide: biom-format =========== + +The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium supported project. + +https://biom-format.org # Available modules @@ -17,10 +21,10 @@ To start using biom-format, load one of these modules using a `module load` comm module load biom-format/2.1.15-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|biom-format/2.1.15-foss-2022b|x|x|x|x|x|x|x|x| -|biom-format/2.1.14-foss-2022a|x|x|x|x|x|x|x|x| -|biom-format/2.1.12-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|biom-format/2.1.15-foss-2022b|x|x|x|x|x|x| +|biom-format/2.1.14-foss-2022a|x|x|x|x|x|x| +|biom-format/2.1.12-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bmtagger.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bmtagger.md index be899b29b0db..ac777fdbc22e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bmtagger.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bmtagger.md @@ -6,6 +6,10 @@ hide: bmtagger ======== + +Best Match Tagger for removing human reads from metagenomics datasets + +ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/ # Available modules @@ -17,8 +21,8 @@ To start using bmtagger, load one of these modules using a `module load` command module load bmtagger/3.101-gompi-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bmtagger/3.101-gompi-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bmtagger/3.101-gompi-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bokeh.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bokeh.md index 51cdd0284dcd..71ac3633e876 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bokeh.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bokeh.md @@ -6,6 +6,10 @@ hide: bokeh ===== + +Statistical and novel interactive HTML plots for Python + +https://github.com/bokeh/bokeh # Available modules @@ -14,20 +18,88 @@ The overview below shows which bokeh installations are available per HPC-UGent T To start using bokeh, load one of these modules using a `module load` command like: ```shell -module load bokeh/2.4.3-foss-2022a +module load bokeh/3.2.2-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bokeh/2.4.3-foss-2022a|x|x|x|x|x|x|x|x| -|bokeh/2.4.2-foss-2021b|x|x|x|x|x|x|x|x| -|bokeh/2.4.1-foss-2021a|x|x|x|-|x|x|x|x| -|bokeh/2.2.3-intel-2020b|-|x|x|-|x|x|x|x| -|bokeh/2.2.3-fosscuda-2020b|x|-|-|-|x|-|-|-| -|bokeh/2.2.3-foss-2020b|-|x|x|x|x|x|x|x| -|bokeh/2.0.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|bokeh/2.0.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|bokeh/1.4.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|bokeh/1.4.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bokeh/3.2.2-foss-2023a|x|x|x|x|x|x| +|bokeh/2.4.3-foss-2022a|x|x|x|x|x|x| +|bokeh/2.4.2-foss-2021b|x|x|x|x|x|x| +|bokeh/2.4.1-foss-2021a|x|x|x|-|x|x| +|bokeh/2.2.3-intel-2020b|-|x|x|-|x|x| +|bokeh/2.2.3-fosscuda-2020b|x|-|-|-|x|-| +|bokeh/2.2.3-foss-2020b|-|x|x|x|x|x| +|bokeh/2.0.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|bokeh/2.0.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|bokeh/1.4.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|bokeh/1.4.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### bokeh/3.2.2-foss-2023a + +This is a list of extensions included in the module: + +bokeh-3.2.2, contourpy-1.0.7, xyzservices-2023.7.0 + +### bokeh/2.4.3-foss-2022a + +This is a list of extensions included in the module: + +bokeh-2.4.3, tornado-6.1 + +### bokeh/2.4.2-foss-2021b + +This is a list of extensions included in the module: + +bokeh-2.4.2, tornado-6.1 + +### bokeh/2.4.1-foss-2021a + +This is a list of extensions included in the module: + +bokeh-2.4.1, tornado-6.1 + +### bokeh/2.2.3-intel-2020b + +This is a list of extensions included in the module: + +bokeh-2.2.3, tornado-6.1 + +### bokeh/2.2.3-fosscuda-2020b + +This is a list of extensions included in the module: + +bokeh-2.2.3, tornado-6.1 + +### bokeh/2.2.3-foss-2020b + +This is a list of extensions included in the module: + +bokeh-2.2.3, tornado-6.1 + +### bokeh/2.0.2-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +bokeh-2.0.2, tornado-6.0.4, typing-extensions-3.7.4.2 + +### bokeh/2.0.2-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +bokeh-2.0.2, tornado-6.0.4, typing-extensions-3.7.4.2 + +### bokeh/1.4.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +bokeh-1.4.0, tornado-6.0.3 + +### bokeh/1.4.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +bokeh-1.4.0, tornado-6.0.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/boto3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/boto3.md index 525466b42cef..9bc74a77cd61 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/boto3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/boto3.md @@ -6,6 +6,10 @@ hide: boto3 ===== + +Boto3 is the Amazon Web Services (AWS) Software Development Kit(SDK) for Python, which allows Python developers to write software that makesuse of services like Amazon S3 and Amazon EC2. + +https://github.com/boto/boto3 # Available modules @@ -14,13 +18,39 @@ The overview below shows which boto3 installations are available per HPC-UGent T To start using boto3, load one of these modules using a `module load` command like: ```shell -module load boto3/1.26.163-GCCcore-12.2.0 +module load boto3/1.34.10-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|boto3/1.34.10-GCCcore-12.2.0|x|x|x|x|x|x| +|boto3/1.26.163-GCCcore-12.2.0|x|x|x|x|x|x| +|boto3/1.20.13-GCCcore-11.2.0|x|x|x|-|x|x| +|boto3/1.20.13-GCCcore-10.3.0|x|x|x|-|x|x| + + +### boto3/1.34.10-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +boto3-1.34.10, botocore-1.34.12, jmespath-1.0.1, s3transfer-0.10.0 + +### boto3/1.26.163-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +boto3-1.26.163, botocore-1.29.163, jmespath-1.0.1, s3transfer-0.6.1 + +### boto3/1.20.13-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +boto3-1.20.13, botocore-1.23.13, jmespath-0.10.0, s3transfer-0.5.0 + +### boto3/1.20.13-GCCcore-10.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|boto3/1.26.163-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|boto3/1.20.13-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|boto3/1.20.13-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +boto3-1.20.13, botocore-1.23.13, jmespath-0.10.0, s3transfer-0.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bpp.md index 75f69c334270..e39aa409f516 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bpp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bpp.md @@ -6,6 +6,10 @@ hide: bpp === + +The aim of this project is to implement a versatile high-performance version of the BPP software. + +https://github.com/bpp/bpp # Available modules @@ -17,8 +21,8 @@ To start using bpp, load one of these modules using a `module load` command like module load bpp/4.4.0-GCC-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bpp/4.4.0-GCC-10.3.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bpp/4.4.0-GCC-10.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/btllib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/btllib.md new file mode 100644 index 000000000000..4640c7c2b370 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/btllib.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +btllib +====== + + +Bioinformatics Technology Lab common code library + +https://github.com/bcgsc/btllib +# Available modules + + +The overview below shows which btllib installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using btllib, load one of these modules using a `module load` command like: + +```shell +module load btllib/1.7.0-GCC-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|btllib/1.7.0-GCC-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/build.md b/mkdocs/docs/HPC/only/gent/available_software/detail/build.md index f603581e33db..276038bd7d51 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/build.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/build.md @@ -6,6 +6,10 @@ hide: build ===== + +A simple, correct Python build frontend. + +https://github.com/pypa/build # Available modules @@ -17,8 +21,15 @@ To start using build, load one of these modules using a `module load` command li module load build/0.10.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|build/0.10.0-foss-2022a|x|x|x|x|x|x| + + +### build/0.10.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|build/0.10.0-foss-2022a|x|x|x|x|x|x|x|x| +build-0.10.0, pyproject_hooks-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/buildenv.md b/mkdocs/docs/HPC/only/gent/available_software/detail/buildenv.md index 233368a8ed36..f013f0a9b159 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/buildenv.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/buildenv.md @@ -6,6 +6,10 @@ hide: buildenv ======== + +This module sets a group of environment variables for compilers, linkers, maths libraries, etc., that you can use to easily transition between toolchains when building your software. To query the variables being set please use: module show + +None # Available modules @@ -17,9 +21,9 @@ To start using buildenv, load one of these modules using a `module load` command module load buildenv/default-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|buildenv/default-intel-2019b|-|x|x|-|x|x|-|x| -|buildenv/default-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|buildenv/default-intel-2019b|-|x|x|-|x|x| +|buildenv/default-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/buildingspy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/buildingspy.md index b9ef0b2bd1ab..03f6cd198047 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/buildingspy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/buildingspy.md @@ -6,6 +6,10 @@ hide: buildingspy =========== + +Python modules for automating Modelica simulations and for running unit test for the Buildings library + +https://simulationresearch.lbl.gov/modelica/buildingspy # Available modules @@ -17,8 +21,15 @@ To start using buildingspy, load one of these modules using a `module load` comm module load buildingspy/4.0.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|buildingspy/4.0.0-foss-2022a|x|x|x|-|x|x| + + +### buildingspy/4.0.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|buildingspy/4.0.0-foss-2022a|x|x|x|-|x|x|x|x| +buildingspy-4.0.0, Cerberus-1.3.4, pyfunnel-0.3.0, pytidylib-0.3.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bwa-meth.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bwa-meth.md index e9936d5eda6f..ee4c7e24781d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bwa-meth.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bwa-meth.md @@ -6,6 +6,10 @@ hide: bwa-meth ======== + +Fast and accurante alignment of BS-Seq reads. + +https://github.com/brentp/bwa-meth # Available modules @@ -17,9 +21,22 @@ To start using bwa-meth, load one of these modules using a `module load` command module load bwa-meth/0.2.6-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bwa-meth/0.2.6-GCC-11.3.0|x|x|x|x|x|x| +|bwa-meth/0.2.2-iccifort-2019.5.281|-|x|-|-|-|-| + + +### bwa-meth/0.2.6-GCC-11.3.0 + +This is a list of extensions included in the module: + +bwa-meth-0.2.6, toolshed-0.4.6 + +### bwa-meth/0.2.2-iccifort-2019.5.281 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bwa-meth/0.2.6-GCC-11.3.0|x|x|x|x|x|x|x|x| -|bwa-meth/0.2.2-iccifort-2019.5.281|-|x|-|-|-|-|-|-| +bwa-meth-0.2.2, toolshed-0.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bwidget.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bwidget.md index 7f8f8cba1d93..2c18f201ec34 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bwidget.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bwidget.md @@ -6,6 +6,10 @@ hide: bwidget ======= + +The BWidget Toolkit is a high-level Widget Set for Tcl/Tk built using native Tcl/Tk 8.x namespaces. + +https://core.tcl-lang.org/bwidget/home # Available modules @@ -17,8 +21,8 @@ To start using bwidget, load one of these modules using a `module load` command module load bwidget/1.9.15-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bwidget/1.9.15-GCCcore-11.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bwidget/1.9.15-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bx-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bx-python.md index 9c48344e2d9c..291396c10348 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bx-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bx-python.md @@ -6,6 +6,10 @@ hide: bx-python ========= + +The bx-python project is a Python library and associated set of scripts to allow for rapid implementation of genome scale analyses. + +https://github.com/bxlab/bx-python # Available modules @@ -14,13 +18,39 @@ The overview below shows which bx-python installations are available per HPC-UGe To start using bx-python, load one of these modules using a `module load` command like: ```shell -module load bx-python/0.9.0-foss-2022a +module load bx-python/0.10.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bx-python/0.10.0-foss-2023a|x|x|x|x|x|x| +|bx-python/0.9.0-foss-2022a|x|x|x|x|x|x| +|bx-python/0.8.13-foss-2021b|x|x|x|-|x|x| +|bx-python/0.8.9-foss-2020a-Python-3.8.2|-|-|x|-|x|x| + + +### bx-python/0.10.0-foss-2023a + +This is a list of extensions included in the module: + +bx-python-0.10.0, python-lzo-1.15 + +### bx-python/0.9.0-foss-2022a + +This is a list of extensions included in the module: + +bx-python-0.9.0, python-lzo-1.14 + +### bx-python/0.8.13-foss-2021b + +This is a list of extensions included in the module: + +bx-python-0.8.13, python-lzo-1.14 + +### bx-python/0.8.9-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bx-python/0.9.0-foss-2022a|x|x|x|x|x|x|x|x| -|bx-python/0.8.13-foss-2021b|x|x|x|-|x|x|x|x| -|bx-python/0.8.9-foss-2020a-Python-3.8.2|-|-|x|-|x|x|x|x| +bx-python-0.8.9, python-lzo-1.12 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/bzip2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/bzip2.md index 5f6c25e7e415..f4387861137e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/bzip2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/bzip2.md @@ -6,6 +6,10 @@ hide: bzip2 ===== + +bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression. + +https://sourceware.org/bzip2 # Available modules @@ -14,19 +18,20 @@ The overview below shows which bzip2 installations are available per HPC-UGent T To start using bzip2, load one of these modules using a `module load` command like: ```shell -module load bzip2/1.0.8-GCCcore-12.3.0 +module load bzip2/1.0.8-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|bzip2/1.0.8-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|bzip2/1.0.8-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|bzip2/1.0.8-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|bzip2/1.0.8-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|bzip2/1.0.8-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|bzip2/1.0.8-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|bzip2/1.0.8-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|bzip2/1.0.8-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|bzip2/1.0.6-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|bzip2/1.0.8-GCCcore-13.2.0|x|x|x|x|x|x| +|bzip2/1.0.8-GCCcore-12.3.0|x|x|x|x|x|x| +|bzip2/1.0.8-GCCcore-12.2.0|x|x|x|x|x|x| +|bzip2/1.0.8-GCCcore-11.3.0|x|x|x|x|x|x| +|bzip2/1.0.8-GCCcore-11.2.0|x|x|x|x|x|x| +|bzip2/1.0.8-GCCcore-10.3.0|x|x|x|x|x|x| +|bzip2/1.0.8-GCCcore-10.2.0|x|x|x|x|x|x| +|bzip2/1.0.8-GCCcore-9.3.0|x|x|x|x|x|x| +|bzip2/1.0.8-GCCcore-8.3.0|x|x|x|x|x|x| +|bzip2/1.0.6-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/c-ares.md b/mkdocs/docs/HPC/only/gent/available_software/detail/c-ares.md index 54ce29b497c5..4e359faafa22 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/c-ares.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/c-ares.md @@ -6,6 +6,10 @@ hide: c-ares ====== + +c-ares is a C library for asynchronous DNS requests (including name resolves) + +https://c-ares.haxx.se # Available modules @@ -17,9 +21,9 @@ To start using c-ares, load one of these modules using a `module load` command l module load c-ares/1.18.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|c-ares/1.18.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|c-ares/1.17.2-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|c-ares/1.18.1-GCCcore-11.2.0|x|x|x|x|x|x| +|c-ares/1.17.2-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cURL.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cURL.md index 8bcf1a21240b..fbb16f452a25 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cURL.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cURL.md @@ -6,6 +6,10 @@ hide: cURL ==== + +libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more. + +http://curl.haxx.se # Available modules @@ -14,19 +18,20 @@ The overview below shows which cURL installations are available per HPC-UGent Ti To start using cURL, load one of these modules using a `module load` command like: ```shell -module load cURL/8.0.1-GCCcore-12.3.0 +module load cURL/8.3.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cURL/8.0.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|cURL/7.86.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|cURL/7.83.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|cURL/7.78.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|cURL/7.76.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|cURL/7.72.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|cURL/7.69.1-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|cURL/7.66.0-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|cURL/7.63.0-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cURL/8.3.0-GCCcore-13.2.0|x|x|x|x|x|x| +|cURL/8.0.1-GCCcore-12.3.0|x|x|x|x|x|x| +|cURL/7.86.0-GCCcore-12.2.0|x|x|x|x|x|x| +|cURL/7.83.0-GCCcore-11.3.0|x|x|x|x|x|x| +|cURL/7.78.0-GCCcore-11.2.0|x|x|x|x|x|x| +|cURL/7.76.0-GCCcore-10.3.0|x|x|x|x|x|x| +|cURL/7.72.0-GCCcore-10.2.0|x|x|x|x|x|x| +|cURL/7.69.1-GCCcore-9.3.0|x|x|x|x|x|x| +|cURL/7.66.0-GCCcore-8.3.0|x|x|x|x|x|x| +|cURL/7.63.0-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cairo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cairo.md index 3a627174e8fa..b787bc4979b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cairo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cairo.md @@ -6,6 +6,10 @@ hide: cairo ===== + +Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB + +https://cairographics.org # Available modules @@ -14,17 +18,18 @@ The overview below shows which cairo installations are available per HPC-UGent T To start using cairo, load one of these modules using a `module load` command like: ```shell -module load cairo/1.17.4-GCCcore-12.2.0 +module load cairo/1.17.8-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cairo/1.17.4-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|cairo/1.17.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|cairo/1.16.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|cairo/1.16.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|cairo/1.16.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|cairo/1.16.0-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|cairo/1.16.0-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cairo/1.17.8-GCCcore-12.3.0|x|x|x|x|x|x| +|cairo/1.17.4-GCCcore-12.2.0|x|x|x|x|x|x| +|cairo/1.17.4-GCCcore-11.3.0|x|x|x|x|x|x| +|cairo/1.16.0-GCCcore-11.2.0|x|x|x|x|x|x| +|cairo/1.16.0-GCCcore-10.3.0|x|x|x|x|x|x| +|cairo/1.16.0-GCCcore-10.2.0|x|x|x|x|x|x| +|cairo/1.16.0-GCCcore-9.3.0|x|x|x|x|x|x| +|cairo/1.16.0-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/canu.md b/mkdocs/docs/HPC/only/gent/available_software/detail/canu.md index ab96586db689..4075cd3ad22e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/canu.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/canu.md @@ -6,6 +6,10 @@ hide: canu ==== + +Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing + +https://canu.readthedocs.io # Available modules @@ -17,11 +21,11 @@ To start using canu, load one of these modules using a `module load` command lik module load canu/2.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|canu/2.2-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|canu/2.2-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|canu/2.1.1-GCCcore-10.2.0|-|x|x|-|x|x|x|x| -|canu/1.9-GCCcore-8.3.0-Java-11|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|canu/2.2-GCCcore-11.2.0|x|x|x|-|x|x| +|canu/2.2-GCCcore-10.3.0|-|x|x|-|x|x| +|canu/2.1.1-GCCcore-10.2.0|-|x|x|-|x|x| +|canu/1.9-GCCcore-8.3.0-Java-11|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/carputils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/carputils.md index bde4c9338cf1..e74f992cdf9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/carputils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/carputils.md @@ -6,6 +6,10 @@ hide: carputils ========= + +carputils is a Python framework for generating and running openCARP examples. + +https://git.opencarp.org/openCARP/carputils # Available modules @@ -17,9 +21,22 @@ To start using carputils, load one of these modules using a `module load` comman module load carputils/20210513-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|carputils/20210513-foss-2020b|-|x|x|x|x|x| +|carputils/20200915-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### carputils/20210513-foss-2020b + +This is a list of extensions included in the module: + +carputils-20210513, common-0.1.2, doxypypy-0.8.8.6, pyDOE-0.3.8 + +### carputils/20200915-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|carputils/20210513-foss-2020b|-|x|x|x|x|x|x|x| -|carputils/20200915-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +carputils-20200915, doxypypy-0.8.8.6, pyDOE-0.3.8 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ccache.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ccache.md index 60d4710e7f00..5a9d82ccfa96 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ccache.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ccache.md @@ -6,6 +6,10 @@ hide: ccache ====== + +Ccache (or “ccache”) is a compiler cache. It speeds up recompilation bycaching previous compilations and detecting when the same compilation is being done again + +https://ccache.dev/ # Available modules @@ -17,8 +21,8 @@ To start using ccache, load one of these modules using a `module load` command l module load ccache/4.6.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ccache/4.6.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ccache/4.6.1-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cctbx-base.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cctbx-base.md index 0bcd8067c014..20a0d0b33df7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cctbx-base.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cctbx-base.md @@ -6,6 +6,10 @@ hide: cctbx-base ========== + +Computational Crystallography Toolbox + +https://github.com/cctbx/cctbx_project # Available modules @@ -17,10 +21,23 @@ To start using cctbx-base, load one of these modules using a `module load` comma module load cctbx-base/2023.5-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cctbx-base/2023.5-foss-2022a|-|-|x|-|x|-| +|cctbx-base/2020.8-fosscuda-2020b|x|-|-|-|x|-| +|cctbx-base/2020.8-foss-2020b|x|x|x|x|x|x| + + +### cctbx-base/2020.8-fosscuda-2020b + +This is a list of extensions included in the module: + +cctbx-base-2020.8, reportlab-3.5.66 + +### cctbx-base/2020.8-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cctbx-base/2023.5-foss-2022a|-|-|x|-|x|-|-|-| -|cctbx-base/2020.8-fosscuda-2020b|x|-|-|-|x|-|-|-| -|cctbx-base/2020.8-foss-2020b|x|x|x|x|x|x|x|x| +cctbx-base-2020.8, reportlab-3.5.66 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cdbfasta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cdbfasta.md index 1b9e02a5e4c4..6389d1275dfa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cdbfasta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cdbfasta.md @@ -6,6 +6,10 @@ hide: cdbfasta ======== + +Fasta file indexing and retrival tool + +https://sourceforge.net/projects/cdbfasta # Available modules @@ -17,9 +21,9 @@ To start using cdbfasta, load one of these modules using a `module load` command module load cdbfasta/0.99-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cdbfasta/0.99-iccifort-2019.5.281|-|x|x|-|x|-|-|-| -|cdbfasta/0.99-GCC-8.3.0|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cdbfasta/0.99-iccifort-2019.5.281|-|x|x|-|x|-| +|cdbfasta/0.99-GCC-8.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cdo-bindings.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cdo-bindings.md index 0882eb5d566e..b99258d6434b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cdo-bindings.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cdo-bindings.md @@ -6,6 +6,10 @@ hide: cdo-bindings ============ + +Python interface to CDO. + +https://github.com/Try2Code/cdo-bindings # Available modules @@ -17,8 +21,15 @@ To start using cdo-bindings, load one of these modules using a `module load` com module load cdo-bindings/1.5.7-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cdo-bindings/1.5.7-foss-2021b|x|x|x|x|x|x| + + +### cdo-bindings/1.5.7-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cdo-bindings/1.5.7-foss-2021b|x|x|x|x|x|x|x|x| +cdo-1.5.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cdsapi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cdsapi.md index e0c066069ca4..d0c95a77d7a7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cdsapi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cdsapi.md @@ -6,6 +6,10 @@ hide: cdsapi ====== + +Climate Data Store API + +https://pypi.org/project/cdsapi # Available modules @@ -17,8 +21,8 @@ To start using cdsapi, load one of these modules using a `module load` command l module load cdsapi/0.5.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cdsapi/0.5.1-GCCcore-11.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cdsapi/0.5.1-GCCcore-11.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cell2location.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cell2location.md index da06269365fe..196c96d7ac99 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cell2location.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cell2location.md @@ -6,6 +6,10 @@ hide: cell2location ============= + +Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model) + +https://github.com/BayraktarLab/cell2location/ # Available modules @@ -17,8 +21,15 @@ To start using cell2location, load one of these modules using a `module load` co module load cell2location/0.05-alpha-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cell2location/0.05-alpha-fosscuda-2020b|-|-|-|-|x|-| + + +### cell2location/0.05-alpha-fosscuda-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cell2location/0.05-alpha-fosscuda-2020b|-|-|-|-|x|-|-|-| +anndata-0.7.5, annoy-1.17.0, bbknn-1.3.12, cell2location-0.05-alpha, descartes-1.1.0, get_version-2.1, ipykernel-5.3.4, legacy-api-wrap-1.2, loompy-3.0.6, louvain-0.7.0, mizani-0.7.1, natsort-7.1.0, nose-1.3.7, numpy-groupies-0.9.13, opt-einsum-3.3.0, palettable-3.3.0, plotnine-0.7.0, pytoml-0.1.21, scanpy-1.6.0, sinfo-0.3.1, stdlib-list-0.8.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cffi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cffi.md index 69d7b3dce7d3..cfef2b3376c2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cffi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cffi.md @@ -6,6 +6,10 @@ hide: cffi ==== + +C Foreign Function Interface for Python. Interact with almost any C code fromPython, based on C-like declarations that you can often copy-paste from headerfiles or documentation. + +https://cffi.readthedocs.io/en/latest/ # Available modules @@ -14,11 +18,32 @@ The overview below shows which cffi installations are available per HPC-UGent Ti To start using cffi, load one of these modules using a `module load` command like: ```shell -module load cffi/1.15.1-GCCcore-12.3.0 +module load cffi/1.15.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cffi/1.15.1-GCCcore-13.2.0|x|x|x|x|x|x| +|cffi/1.15.1-GCCcore-12.3.0|x|x|x|x|x|x| +|cffi/1.15.1-GCCcore-11.3.0|x|x|x|x|x|x| + + +### cffi/1.15.1-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +cffi-1.15.1, pycparser-2.21 + +### cffi/1.15.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +cffi-1.15.1, pycparser-2.21 + +### cffi/1.15.1-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cffi/1.15.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| +cffi-1.15.1, pycparser-2.21 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/chemprop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/chemprop.md index e7414a2829ea..dc886a8c1385 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/chemprop.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/chemprop.md @@ -6,6 +6,10 @@ hide: chemprop ======== + +Message Passing Neural Networks for Molecule Property Prediction + +https://github.com/chemprop/chemprop # Available modules @@ -17,9 +21,22 @@ To start using chemprop, load one of these modules using a `module load` command module load chemprop/1.5.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|chemprop/1.5.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|chemprop/1.5.2-foss-2022a|x|x|x|x|x|x| + + +### chemprop/1.5.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +chemprop-1.5.2, mypy_extensions-1.0.0, packaging-20.4, pandas_flavor-0.2.0, typed-argument-parser-1.7.2, typing_inspect-0.8.0 + +### chemprop/1.5.2-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|chemprop/1.5.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|chemprop/1.5.2-foss-2022a|x|x|x|x|x|x|x|x| +chemprop-1.5.2, mypy_extensions-1.0.0, packaging-20.4, pandas_flavor-0.2.0, typed-argument-parser-1.7.2, typing_inspect-0.8.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/chewBBACA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/chewBBACA.md index a938a802e123..decebbc5ebed 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/chewBBACA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/chewBBACA.md @@ -6,6 +6,10 @@ hide: chewBBACA ========= + +chewBBACA stands for "BSR-Based Allele Calling Algorithm".chewBBACA is a comprehensive pipeline including a set of functions for thecreation and validation of whole genome and core genome MultiLocus SequenceTyping (wg/cgMLST) schemas, providing an allele calling algorithm based on BlastScore Ratio that can be run in multiprocessor settings and a set of functions tovisualize and validate allele variation in the loci. + +https://github.com/B-UMMI/chewBBACA # Available modules @@ -17,8 +21,15 @@ To start using chewBBACA, load one of these modules using a `module load` comman module load chewBBACA/2.5.5-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|chewBBACA/2.5.5-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### chewBBACA/2.5.5-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|chewBBACA/2.5.5-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +chewBBACA-2.5.5, isodate-0.6.0, rdflib-5.0.0, SPARQLWrapper-1.8.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cicero.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cicero.md index 0063f542b3af..926fd0c235ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cicero.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cicero.md @@ -6,6 +6,10 @@ hide: cicero ====== + +Cicero is an R package that provides tools for analyzing single-cell chromatin accessibility experiments. + +https://cole-trapnell-lab.github.io/cicero-release # Available modules @@ -17,9 +21,9 @@ To start using cicero, load one of these modules using a `module load` command l module load cicero/1.3.8-foss-2022a-R-4.2.1-Monocle3 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cicero/1.3.8-foss-2022a-R-4.2.1-Monocle3|x|x|x|x|x|x|x|x| -|cicero/1.3.4.11-foss-2020b-R-4.0.3-Monocle3|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cicero/1.3.8-foss-2022a-R-4.2.1-Monocle3|x|x|x|x|x|x| +|cicero/1.3.4.11-foss-2020b-R-4.0.3-Monocle3|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cimfomfa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cimfomfa.md new file mode 100644 index 000000000000..100d15275e71 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cimfomfa.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +cimfomfa +======== + + +This library supports both MCL, a cluster algorithm for graphs, and zoem, amacro/DSL language. It supplies abstractions for memory management, I/O,associative arrays, strings, heaps, and a few other things. The string libraryhas had heavy testing as part of zoem. Both understandably and regrettably Ichose long ago to make it C-string-compatible, hence nul bytes may not be partof a string. At some point I hope to rectify this, perhaps unrealistically. + +https://github.com/micans/cimfomfa +# Available modules + + +The overview below shows which cimfomfa installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using cimfomfa, load one of these modules using a `module load` command like: + +```shell +module load cimfomfa/22.273-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cimfomfa/22.273-GCCcore-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/code-cli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/code-cli.md new file mode 100644 index 000000000000..e284ee7a6fce --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/code-cli.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +code-cli +======== + + +Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos. + +https://code.visualstudio.com/ +# Available modules + + +The overview below shows which code-cli installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using code-cli, load one of these modules using a `module load` command like: + +```shell +module load code-cli/1.85.1-x64 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|code-cli/1.85.1-x64|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/code-server.md b/mkdocs/docs/HPC/only/gent/available_software/detail/code-server.md index 57d453655267..7f7c666999d8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/code-server.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/code-server.md @@ -6,6 +6,10 @@ hide: code-server =========== + +Run VS Code on any machine anywhere and access it in the browser. + +https://github.com/cdr/code-server # Available modules @@ -17,8 +21,8 @@ To start using code-server, load one of these modules using a `module load` comm module load code-server/4.9.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|code-server/4.9.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|code-server/4.9.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/colossalai.md b/mkdocs/docs/HPC/only/gent/available_software/detail/colossalai.md index 6871ad4f0041..5dded11764d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/colossalai.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/colossalai.md @@ -6,6 +6,10 @@ hide: colossalai ========== + +Colossal-AI: A Unified Deep Learning System for Big Model Era + +https://colossalai.org/ # Available modules @@ -17,8 +21,15 @@ To start using colossalai, load one of these modules using a `module load` comma module load colossalai/0.1.8-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|colossalai/0.1.8-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### colossalai/0.1.8-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|colossalai/0.1.8-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| +cfgv-3.3.1, colossalai-0.1.8, commonmark-0.9.1, fabric-2.7.1, identify-2.5.1, invoke-1.7.1, nodeenv-1.6.0, pre_commit-2.19.0, rich-12.4.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/conan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/conan.md index a98b61907577..45238c3bff4b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/conan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/conan.md @@ -6,6 +6,10 @@ hide: conan ===== + +Decentralized, open-source (MIT), C/C++ package manager. + +https://conan.io # Available modules @@ -14,11 +18,25 @@ The overview below shows which conan installations are available per HPC-UGent T To start using conan, load one of these modules using a `module load` command like: ```shell -module load conan/1.58.0-GCCcore-11.3.0 +module load conan/1.60.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|conan/1.60.2-GCCcore-12.3.0|x|x|x|x|x|x| +|conan/1.58.0-GCCcore-11.3.0|x|x|x|x|x|x| + + +### conan/1.60.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +bottle-0.12.25, conan-1.60.2, distro-1.8.0, fasteners-0.18, node-semver-0.6.1, patch-ng-1.17.4, pluginbase-1.0.1, PyJWT-2.8.0 + +### conan/1.58.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|conan/1.58.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +bottle-0.12.23, conan-1.58.0, distro-1.7.0, fasteners-0.18, node-semver-0.6.1, patch-ng-1.17.4, pluginbase-1.0.1, PyJWT-2.6.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/configurable-http-proxy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/configurable-http-proxy.md new file mode 100644 index 000000000000..b284d7173807 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/configurable-http-proxy.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +configurable-http-proxy +======================= + + +HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server. + +https://github.com/jupyterhub/configurable-http-proxy +# Available modules + + +The overview below shows which configurable-http-proxy installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using configurable-http-proxy, load one of these modules using a `module load` command like: + +```shell +module load configurable-http-proxy/4.5.5-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|configurable-http-proxy/4.5.5-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cooler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cooler.md index 1565d65bb194..52a1e7024f4d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cooler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cooler.md @@ -6,6 +6,10 @@ hide: cooler ====== + +Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices. + +https://open2c.github.io/cooler # Available modules @@ -17,8 +21,15 @@ To start using cooler, load one of these modules using a `module load` command l module load cooler/0.9.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cooler/0.9.1-foss-2022a|x|x|x|x|x|x| + + +### cooler/0.9.1-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cooler/0.9.1-foss-2022a|x|x|x|x|x|x|x|x| +asciitree-0.3.3, cooler-0.9.1, cytoolz-0.12.1, dill-0.3.6, multiprocess-0.70.14, setuptools-67.2.0, toolz-0.12.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/coverage.md b/mkdocs/docs/HPC/only/gent/available_software/detail/coverage.md index 84b9688b86c7..28d32086e112 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/coverage.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/coverage.md @@ -6,6 +6,10 @@ hide: coverage ======== + +Coverage.py is a tool for measuring code coverage of Python programs. It monitors your program, noting which parts of the code have been executed, then analyzes the source to identify code that could have been executed but was not. + +https://coverage.readthedocs.io # Available modules @@ -14,11 +18,12 @@ The overview below shows which coverage installations are available per HPC-UGen To start using coverage, load one of these modules using a `module load` command like: ```shell -module load coverage/5.5-GCCcore-10.2.0 +module load coverage/7.2.7-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|coverage/5.5-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|coverage/7.2.7-GCCcore-11.3.0|x|x|x|x|x|x| +|coverage/5.5-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cppy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cppy.md index cab037ca9b55..6ca106e83076 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cppy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cppy.md @@ -6,6 +6,10 @@ hide: cppy ==== + +A small C++ header library which makes it easier to writePython extension modules. The primary feature is a PyObject smart pointerwhich automatically handles reference counting and provides conveniencemethods for performing common object operations. + +https://github.com/nucleic/cppy # Available modules @@ -14,14 +18,15 @@ The overview below shows which cppy installations are available per HPC-UGent Ti To start using cppy, load one of these modules using a `module load` command like: ```shell -module load cppy/1.2.1-GCCcore-12.2.0 +module load cppy/1.2.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cppy/1.2.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|cppy/1.2.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|cppy/1.1.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|cppy/1.1.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cppy/1.2.1-GCCcore-12.3.0|x|x|x|x|x|x| +|cppy/1.2.1-GCCcore-12.2.0|x|x|x|x|x|x| +|cppy/1.2.1-GCCcore-11.3.0|x|x|x|x|x|x| +|cppy/1.1.0-GCCcore-11.2.0|x|x|x|x|x|x| +|cppy/1.1.0-GCCcore-10.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cpu_features.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cpu_features.md index 813a7ee55062..6216d137d776 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cpu_features.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cpu_features.md @@ -6,6 +6,10 @@ hide: cpu_features ============ + +A cross-platform C library to retrieve CPU features (such as available instructions) at runtime. + +https://github.com/google/cpu_features # Available modules @@ -17,8 +21,8 @@ To start using cpu_features, load one of these modules using a `module load` com module load cpu_features/0.6.0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cpu_features/0.6.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cpu_features/0.6.0-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cryoDRGN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cryoDRGN.md index fa45393dbb84..d41b6d6a2ab5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cryoDRGN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cryoDRGN.md @@ -6,6 +6,10 @@ hide: cryoDRGN ======== + +cryoDRGN: Deep Reconstructing Generative Networks for cryo-EM heterogeneous reconstruction. CryoDRGN is a neural network based algorithm for heterogeneous cryo-EM reconstruction. In particular, the method models a continuous distribution over 3D structures by using a neural network based representation for the volume. + +https://cb.csail.mit.edu/cb/cryodrgn/ # Available modules @@ -17,9 +21,22 @@ To start using cryoDRGN, load one of these modules using a `module load` command module load cryoDRGN/1.0.0-beta-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cryoDRGN/1.0.0-beta-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|cryoDRGN/0.3.5-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### cryoDRGN/1.0.0-beta-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +colorlover-0.3.0, cryodrgn-1.0.0-beta, cufflinks-0.17.3, pynndescent-0.5.6, umap-learn-0.5.3 + +### cryoDRGN/0.3.5-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cryoDRGN/1.0.0-beta-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|cryoDRGN/0.3.5-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| +colorlover-0.3.0, cryodrgn-0.3.5, cufflinks-0.17.3, pynndescent-0.5.6, umap-learn-0.5.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cryptography.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cryptography.md index 3fce82fd3797..b5dff3964303 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cryptography.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cryptography.md @@ -6,6 +6,10 @@ hide: cryptography ============ + +cryptography is a package designed to expose cryptographic primitives and recipes to Python developers. + +https://github.com/pyca/cryptography # Available modules @@ -14,11 +18,12 @@ The overview below shows which cryptography installations are available per HPC- To start using cryptography, load one of these modules using a `module load` command like: ```shell -module load cryptography/41.0.1-GCCcore-12.3.0 +module load cryptography/41.0.5-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cryptography/41.0.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cryptography/41.0.5-GCCcore-13.2.0|x|x|x|x|x|x| +|cryptography/41.0.1-GCCcore-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cuDNN.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cuDNN.md index d2b58f545577..a2bac7434aec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cuDNN.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cuDNN.md @@ -6,6 +6,10 @@ hide: cuDNN ===== + +The NVIDIA CUDA Deep Neural Network library (cuDNN) isa GPU-accelerated library of primitives for deep neural networks. + +https://developer.nvidia.com/cudnn # Available modules @@ -14,14 +18,15 @@ The overview below shows which cuDNN installations are available per HPC-UGent T To start using cuDNN, load one of these modules using a `module load` command like: ```shell -module load cuDNN/8.4.1.50-CUDA-11.7.0 +module load cuDNN/8.9.2.26-CUDA-12.1.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cuDNN/8.4.1.50-CUDA-11.7.0|x|-|x|-|x|-|-|-| -|cuDNN/8.2.2.26-CUDA-11.4.1|x|-|-|-|x|-|-|-| -|cuDNN/8.2.1.32-CUDA-11.3.1|x|x|x|-|x|x|x|x| -|cuDNN/8.0.4.30-CUDA-11.1.1|x|-|-|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cuDNN/8.9.2.26-CUDA-12.1.1|x|-|x|-|x|-| +|cuDNN/8.4.1.50-CUDA-11.7.0|x|-|x|-|x|-| +|cuDNN/8.2.2.26-CUDA-11.4.1|x|-|-|-|x|-| +|cuDNN/8.2.1.32-CUDA-11.3.1|x|x|x|-|x|x| +|cuDNN/8.0.4.30-CUDA-11.1.1|x|-|-|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cuTENSOR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cuTENSOR.md index b4105379be63..e0cb7ab01498 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cuTENSOR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cuTENSOR.md @@ -6,6 +6,10 @@ hide: cuTENSOR ======== + +The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations. + +https://developer.nvidia.com/cutensor # Available modules @@ -17,8 +21,8 @@ To start using cuTENSOR, load one of these modules using a `module load` command module load cuTENSOR/1.2.2.5-CUDA-11.1.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cuTENSOR/1.2.2.5-CUDA-11.1.1|-|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cuTENSOR/1.2.2.5-CUDA-11.1.1|-|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md index 6e52b370797c..21a61cf160d7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cutadapt.md @@ -6,6 +6,10 @@ hide: cutadapt ======== + +Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. + +https://opensource.scilifelab.se/projects/cutadapt/ # Available modules @@ -17,15 +21,64 @@ To start using cutadapt, load one of these modules using a `module load` command module load cutadapt/4.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cutadapt/4.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|cutadapt/3.5-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|cutadapt/3.4-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|cutadapt/2.10-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| -|cutadapt/2.7-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|-|x| -|cutadapt/1.18-GCCcore-8.3.0-Python-2.7.16|-|x|x|-|x|x|-|x| -|cutadapt/1.18-GCCcore-8.3.0|-|x|x|-|x|x|-|x| -|cutadapt/1.18-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cutadapt/4.2-GCCcore-11.3.0|x|x|x|x|x|x| +|cutadapt/3.5-GCCcore-11.2.0|x|x|x|-|x|x| +|cutadapt/3.4-GCCcore-10.2.0|-|x|x|x|x|x| +|cutadapt/2.10-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| +|cutadapt/2.7-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| +|cutadapt/1.18-GCCcore-8.3.0-Python-2.7.16|-|x|x|-|x|x| +|cutadapt/1.18-GCCcore-8.3.0|-|x|x|-|x|x| +|cutadapt/1.18-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x| + + +### cutadapt/4.2-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +cutadapt-4.2, dnaio-0.10.0, xopen-1.7.0 + +### cutadapt/3.5-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +cutadapt-3.5, dnaio-0.7.0, xopen-1.4.0 + +### cutadapt/3.4-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +cutadapt-3.4, dnaio-0.5.2, xopen-1.1.0 + +### cutadapt/2.10-GCCcore-9.3.0-Python-3.8.2 + +This is a list of extensions included in the module: + +cutadapt-2.10, dnaio-0.4.2, xopen-0.8.4 + +### cutadapt/2.7-GCCcore-8.3.0-Python-3.7.4 + +This is a list of extensions included in the module: + +cutadapt-2.7, dnaio-0.4.1, xopen-0.8.4 + +### cutadapt/1.18-GCCcore-8.3.0-Python-2.7.16 + +This is a list of extensions included in the module: + +bz2file-0.98, cutadapt-1.18, xopen-0.8.4 + +### cutadapt/1.18-GCCcore-8.3.0 + +This is a list of extensions included in the module: + +bz2file-0.98, cutadapt-1.18, xopen-0.5.1 + +### cutadapt/1.18-GCC-10.2.0-Python-2.7.18 + +This is a list of extensions included in the module: + +bz2file-0.98, cutadapt-1.18, xopen-0.8.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cuteSV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cuteSV.md index aa0f2657b8b2..e5453297f39e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cuteSV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cuteSV.md @@ -6,6 +6,10 @@ hide: cuteSV ====== + +cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection. + +https://github.com/tjiangHIT/cuteSV # Available modules @@ -17,8 +21,15 @@ To start using cuteSV, load one of these modules using a `module load` command l module load cuteSV/2.0.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cuteSV/2.0.3-foss-2022a|x|x|x|x|x|x| + + +### cuteSV/2.0.3-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cuteSV/2.0.3-foss-2022a|x|x|x|x|x|x|x|x| +cigar-0.1.3, cuteSV-2.0.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/cython-blis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/cython-blis.md index 4cfe9de47a8a..26eef1e56bd0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/cython-blis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/cython-blis.md @@ -6,6 +6,10 @@ hide: cython-blis =========== + +Fast BLAS-like operations from Python and Cython, without the tears.Provides the Blis linear algebra routines as a self-contained Python C-extension. + +https://github.com/explosion/cython-blis # Available modules @@ -17,8 +21,8 @@ To start using cython-blis, load one of these modules using a `module load` comm module load cython-blis/0.9.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|cython-blis/0.9.1-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|cython-blis/0.9.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dask.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dask.md index fdbb5df85ba2..69692b67e11e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dask.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dask.md @@ -6,6 +6,10 @@ hide: dask ==== + +Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love. + +https://dask.org/ # Available modules @@ -14,20 +18,88 @@ The overview below shows which dask installations are available per HPC-UGent Ti To start using dask, load one of these modules using a `module load` command like: ```shell -module load dask/2022.10.0-foss-2022a +module load dask/2023.12.1-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dask/2022.10.0-foss-2022a|x|x|x|x|x|x|x|x| -|dask/2022.1.0-foss-2021b|x|x|x|x|x|x|x|x| -|dask/2021.9.1-foss-2021a|x|x|x|-|x|x|x|x| -|dask/2021.2.0-intel-2020b|-|x|x|-|x|x|x|x| -|dask/2021.2.0-fosscuda-2020b|x|-|-|-|x|-|-|-| -|dask/2021.2.0-foss-2020b|-|x|x|x|x|x|x|x| -|dask/2.18.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|dask/2.18.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|dask/2.8.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|dask/2.8.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dask/2023.12.1-foss-2023a|x|x|x|x|x|x| +|dask/2022.10.0-foss-2022a|x|x|x|x|x|x| +|dask/2022.1.0-foss-2021b|x|x|x|x|x|x| +|dask/2021.9.1-foss-2021a|x|x|x|-|x|x| +|dask/2021.2.0-intel-2020b|-|x|x|-|x|x| +|dask/2021.2.0-fosscuda-2020b|x|-|-|-|x|-| +|dask/2021.2.0-foss-2020b|-|x|x|x|x|x| +|dask/2.18.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|dask/2.18.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|dask/2.8.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|dask/2.8.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### dask/2023.12.1-foss-2023a + +This is a list of extensions included in the module: + +dask-2023.12.1, dask-jobqueue-0.8.2, dask-mpi-2022.4.0, distributed-2023.12.1, docrep-0.3.2, HeapDict-1.0.1, locket-1.0.0, partd-1.4.1, tblib-3.0.0, toolz-0.12.0, zict-3.0.0 + +### dask/2022.10.0-foss-2022a + +This is a list of extensions included in the module: + +cloudpickle-2.2.0, dask-2022.10.0, dask-jobqueue-0.8.1, dask-mpi-2022.4.0, distributed-2022.10.0, docrep-0.3.2, fsspec-2021.7.0, HeapDict-1.0.1, locket-1.0.0, partd-1.3.0, tblib-1.7.0, toolz-0.12.0, zict-2.2.0 + +### dask/2022.1.0-foss-2021b + +This is a list of extensions included in the module: + +cloudpickle-2.0.0, dask-2022.1.0, dask-jobqueue-0.7.3, dask-mpi-2021.11.0, distributed-2022.1.0, docrep-0.3.2, HeapDict-1.0.1, locket-0.2.1, partd-1.2.0, tblib-1.7.0, toolz-0.11.2, zict-2.0.0 + +### dask/2021.9.1-foss-2021a + +This is a list of extensions included in the module: + +cloudpickle-2.0.0, dask-2021.9.1, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.9.1, docrep-0.3.2, fsspec-2021.10.1, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.2.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0 + +### dask/2021.2.0-intel-2020b + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, dask-2021.2.0, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.2.0, docrep-0.3.2, fsspec-0.8.7, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.1.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0 + +### dask/2021.2.0-fosscuda-2020b + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, dask-2021.2.0, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.2.0, docrep-0.3.2, fsspec-0.8.7, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.1.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0 + +### dask/2021.2.0-foss-2020b + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, dask-2021.2.0, dask-jobqueue-0.7.2, dask-mpi-2.21.0, distributed-2021.2.0, docrep-0.3.2, fsspec-0.8.7, HeapDict-1.0.1, locket-0.2.1, msgpack-1.0.2, partd-1.1.0, tblib-1.7.0, toolz-0.11.1, zict-2.0.0 + +### dask/2.18.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +cloudpickle-1.4.1, contextvars-2.4, dask-2.18.1, dask-jobqueue-0.7.1, dask-mpi-2.0.0, distributed-2.18.0, docrep-0.2.7, fsspec-0.7.4, HeapDict-1.0.1, immutables-0.14, locket-0.2.0, msgpack-1.0.0, partd-1.1.0, tblib-1.6.0, toolz-0.10.0, zict-2.0.0 + +### dask/2.18.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +cloudpickle-1.4.1, contextvars-2.4, dask-2.18.1, dask-jobqueue-0.7.1, dask-mpi-2.0.0, distributed-2.18.0, docrep-0.2.7, fsspec-0.7.4, HeapDict-1.0.1, immutables-0.14, locket-0.2.0, msgpack-1.0.0, partd-1.1.0, tblib-1.6.0, toolz-0.10.0, zict-2.0.0 + +### dask/2.8.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cloudpickle-1.2.2, dask-2.8.0, dask-jobqueue-0.7.0, dask-mpi-2.0.0, distributed-2.8.0, docrep-0.2.7, fsspec-0.6.0, HeapDict-1.0.1, locket-0.2.0, msgpack-0.6.2, partd-1.0.0, tblib-1.5.0, toolz-0.10.0, zict-1.0.0 + +### dask/2.8.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cloudpickle-1.2.2, dask-2.8.0, dask-jobqueue-0.7.0, dask-mpi-2.0.0, distributed-2.8.0, docrep-0.2.7, fsspec-0.6.0, HeapDict-1.0.1, locket-0.2.0, msgpack-0.6.2, partd-1.0.0, tblib-1.5.0, toolz-0.10.0, zict-1.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dbus-glib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dbus-glib.md index c621a827dbd4..6cfeed043876 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dbus-glib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dbus-glib.md @@ -6,6 +6,10 @@ hide: dbus-glib ========= + +D-Bus is a message bus system, a simple way for applications to talk to one another. + +https://dbus.freedesktop.org/doc/dbus-glib # Available modules @@ -17,9 +21,9 @@ To start using dbus-glib, load one of these modules using a `module load` comman module load dbus-glib/0.112-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dbus-glib/0.112-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|dbus-glib/0.112-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dbus-glib/0.112-GCCcore-11.2.0|x|x|x|x|x|x| +|dbus-glib/0.112-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dclone.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dclone.md index bcdd00366bfb..3b7b93d9bd17 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dclone.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dclone.md @@ -6,6 +6,10 @@ hide: dclone ====== + +Low level functions for implementing maximum likelihood estimating procedures for complex models using data cloning and Bayesian Markov chain Monte Carlo methods + +https://cran.r-project.org/web/packages/dclone # Available modules @@ -17,8 +21,8 @@ To start using dclone, load one of these modules using a `module load` command l module load dclone/2.3-0-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dclone/2.3-0-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dclone/2.3-0-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/deal.II.md b/mkdocs/docs/HPC/only/gent/available_software/detail/deal.II.md index e1ab061d9dc6..02b90f874b45 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/deal.II.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/deal.II.md @@ -6,6 +6,10 @@ hide: deal.II ======= + +deal.II is a C++ program library targeted at the computational solution of partial differential equations using adaptive finite elements. + +https://www.dealii.org # Available modules @@ -17,8 +21,8 @@ To start using deal.II, load one of these modules using a `module load` command module load deal.II/9.3.3-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|deal.II/9.3.3-foss-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|deal.II/9.3.3-foss-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/decona.md b/mkdocs/docs/HPC/only/gent/available_software/detail/decona.md index b8f49dac583f..cbd895eaef21 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/decona.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/decona.md @@ -6,6 +6,10 @@ hide: decona ====== + +fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads + +https://github.com/Saskia-Oosterbroek/decona # Available modules @@ -17,8 +21,8 @@ To start using decona, load one of these modules using a `module load` command l module load decona/0.1.2-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|decona/0.1.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|decona/0.1.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/deepTools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/deepTools.md index e262541c654e..aace08fc2673 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/deepTools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/deepTools.md @@ -6,6 +6,10 @@ hide: deepTools ========= + +deepTools is a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq. + +https://deeptools.readthedocs.io/ # Available modules @@ -17,9 +21,22 @@ To start using deepTools, load one of these modules using a `module load` comman module load deepTools/3.5.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|deepTools/3.5.1-foss-2021b|x|x|x|-|x|x| +|deepTools/3.3.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### deepTools/3.5.1-foss-2021b + +This is a list of extensions included in the module: + +deepTools-3.5.1, deeptoolsintervals-0.1.9, numpydoc-1.2, py2bit-0.3.0 + +### deepTools/3.3.1-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|deepTools/3.5.1-foss-2021b|x|x|x|-|x|x|x|x| -|deepTools/3.3.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +deepTools-3.3.1, deeptoolsintervals-0.1.9, numpydoc-0.9.1, py2bit-0.3.0, pyBigWig-0.3.17 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/deepdiff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/deepdiff.md index 3c360f38caca..7d200f97a33e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/deepdiff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/deepdiff.md @@ -6,6 +6,10 @@ hide: deepdiff ======== + +DeepDiff: Deep Difference of dictionaries, iterables and almost any other object recursively. + +https://zepworks.com/deepdiff/current/ # Available modules @@ -14,11 +18,32 @@ The overview below shows which deepdiff installations are available per HPC-UGen To start using deepdiff, load one of these modules using a `module load` command like: ```shell -module load deepdiff/5.8.1-GCCcore-11.3.0 +module load deepdiff/6.7.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|deepdiff/6.7.1-GCCcore-12.3.0|x|x|x|x|x|x| +|deepdiff/6.7.1-GCCcore-12.2.0|x|x|x|x|x|x| +|deepdiff/5.8.1-GCCcore-11.3.0|x|x|x|x|x|x| + + +### deepdiff/6.7.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +deepdiff-6.7.1, jsonpickle-3.0.2, ordered-set-4.1.0 + +### deepdiff/6.7.1-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +deepdiff-6.7.1, jsonpickle-3.0.2, ordered-set-4.1.0 + +### deepdiff/5.8.1-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|deepdiff/5.8.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +deepdiff-5.8.1, jsonpickle-2.2.0, ordered-set-4.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/detectron2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/detectron2.md index 4156f2f09bba..d5a0068665ce 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/detectron2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/detectron2.md @@ -6,6 +6,10 @@ hide: detectron2 ========== + +Detectron2 is a platform for object detection, segmentation and other visual recognition tasks. + +https://github.com/facebookresearch/detectron2 # Available modules @@ -17,8 +21,15 @@ To start using detectron2, load one of these modules using a `module load` comma module load detectron2/0.6-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|detectron2/0.6-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### detectron2/0.6-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|detectron2/0.6-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| +black-21.4b2, CacheControl-0.12.11, cloudpickle-2.0.0, detectron2-0.6, editables-0.3, fvcore-0.1.5.post20220414, hatch-vcs-0.2.0, hatchling-0.23.0, iopath-0.1.9, mypy-extensions-0.4.3, packaging-21.3, pathspec-0.9.0, platformdirs-2.5.2, pluggy-1.0.0, poetry-1.1.13, poetry-core-1.0.8, portalocker-2.4.0, pytest-7.1.2, setuptools-scm-6.4.2, termcolor-1.1.0, tomli-2.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/devbio-napari.md b/mkdocs/docs/HPC/only/gent/available_software/detail/devbio-napari.md new file mode 100644 index 000000000000..af62e2eab5d0 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/devbio-napari.md @@ -0,0 +1,42 @@ +--- +hide: + - toc +--- + +devbio-napari +============= + + +A bundle of napari plugins useful for 3D+t image processing and analysis for studying developmental biology. + +https://github.com/haesleinhuepf/devbio-napari +# Available modules + + +The overview below shows which devbio-napari installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using devbio-napari, load one of these modules using a `module load` command like: + +```shell +module load devbio-napari/0.10.1-foss-2022a-CUDA-11.7.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|devbio-napari/0.10.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|devbio-napari/0.10.1-foss-2022a|x|x|x|x|x|x| + + +### devbio-napari/0.10.1-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +apoc-0.12.0, comm-0.2.0, czifile-2019.7.2, debugpy-1.8.0, devbio-napari-0.10.1, funcsigs-1.0.2, imageio-ffmpeg-0.4.9, ipycanvas-0.13.1, ipyevents-2.0.2, ipykernel-6.27.1, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-5.5.0, jupytext-1.15.2, loguru-0.7.2, mdit_py_plugins-0.4.0, napari-accelerated-pixel-and-object-classification-0.14.1, napari-assistant-0.4.7, napari-blob-detection-0.0.2, napari-brightness-contrast-0.1.8, napari-clusters-plotter-0.7.3, napari-crop-0.1.9, napari-curtain-0.1.1, napari-czifile2-0.2.7, napari-folder-browser-0.1.3, napari-layer-details-display-0.1.5, napari-mouse-controls-0.1.3, napari-plot-profile-0.2.2, napari-plugin-search-0.1.4, napari-roi-0.1.8, napari-segment-blobs-and-things-with-membranes-0.3.7, napari-simpleitk-image-processing-0.4.5, napari-skimage-regionprops-0.10.1, napari-tabu-0.1.5, napari-time-slicer-0.5.0, napari-tools-menu-0.1.19, napari-workflow-inspector-0.2.2, napari-workflow-optimizer-0.1.4, napari-workflows-0.2.10, napari_animation-0.0.7, napari_pyclesperanto_assistant-0.22.1, napari_pystackreg-0.1.4, platformdirs-2.6.2, PlatyMatch-0.0.3, pyclesperanto_prototype-0.24.1, pyperclip-1.8.2, pystackreg-0.2.7, RedLionfish-0.9, reikna-0.8.0, stackview-0.7.2, the-segmentation-game-0.2.0, traitlets-5.14.0, transforms3d-0.4.1 + +### devbio-napari/0.10.1-foss-2022a + +This is a list of extensions included in the module: + +apoc-0.12.0, comm-0.2.0, czifile-2019.7.2, debugpy-1.8.0, devbio-napari-0.10.1, funcsigs-1.0.2, imageio-ffmpeg-0.4.9, ipycanvas-0.13.1, ipyevents-2.0.2, ipykernel-6.27.1, jupyter-1.0.0, jupyter_console-6.6.3, jupyter_core-5.5.0, jupytext-1.15.2, loguru-0.7.2, mdit_py_plugins-0.4.0, napari-accelerated-pixel-and-object-classification-0.14.1, napari-assistant-0.4.7, napari-blob-detection-0.0.2, napari-brightness-contrast-0.1.8, napari-clusters-plotter-0.7.3, napari-crop-0.1.9, napari-curtain-0.1.1, napari-czifile2-0.2.7, napari-folder-browser-0.1.3, napari-layer-details-display-0.1.5, napari-mouse-controls-0.1.3, napari-plot-profile-0.2.2, napari-plugin-search-0.1.4, napari-roi-0.1.8, napari-segment-blobs-and-things-with-membranes-0.3.7, napari-simpleitk-image-processing-0.4.5, napari-skimage-regionprops-0.10.1, napari-tabu-0.1.5, napari-time-slicer-0.5.0, napari-tools-menu-0.1.19, napari-workflow-inspector-0.2.2, napari-workflow-optimizer-0.1.4, napari-workflows-0.2.10, napari_animation-0.0.7, napari_pyclesperanto_assistant-0.22.1, napari_pystackreg-0.1.4, platformdirs-2.6.2, PlatyMatch-0.0.3, pyclesperanto_prototype-0.24.1, pyperclip-1.8.2, pystackreg-0.2.7, RedLionfish-0.9, reikna-0.8.0, stackview-0.7.2, the-segmentation-game-0.2.0, traitlets-5.14.0, transforms3d-0.4.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dicom2nifti.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dicom2nifti.md index b96a2348b0e8..f1395943247f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dicom2nifti.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dicom2nifti.md @@ -6,6 +6,10 @@ hide: dicom2nifti =========== + +Python library for converting dicom files to nifti + +https://github.com/icometrix/dicom2nifti # Available modules @@ -17,9 +21,9 @@ To start using dicom2nifti, load one of these modules using a `module load` comm module load dicom2nifti/2.3.0-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dicom2nifti/2.3.0-fosscuda-2020b|x|-|-|-|x|-|-|-| -|dicom2nifti/2.3.0-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dicom2nifti/2.3.0-fosscuda-2020b|x|-|-|-|x|-| +|dicom2nifti/2.3.0-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dijitso.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dijitso.md index 17de78abc24a..ed515a180e95 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dijitso.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dijitso.md @@ -6,6 +6,10 @@ hide: dijitso ======= + +dijitso is a Python module for distributed just-in-time shared library building. + +https://bitbucket.org/fenics-project/dijitso # Available modules @@ -17,8 +21,8 @@ To start using dijitso, load one of these modules using a `module load` command module load dijitso/2019.1.0-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dijitso/2019.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dijitso/2019.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dill.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dill.md index 6caa8ba7033c..a37828393f30 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dill.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dill.md @@ -6,6 +6,10 @@ hide: dill ==== + +dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy. + +https://pypi.org/project/dill/ # Available modules @@ -14,15 +18,17 @@ The overview below shows which dill installations are available per HPC-UGent Ti To start using dill, load one of these modules using a `module load` command like: ```shell -module load dill/0.3.6-GCCcore-11.3.0 +module load dill/0.3.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dill/0.3.6-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|dill/0.3.4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|dill/0.3.4-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|dill/0.3.3-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|dill/0.3.3-GCCcore-9.3.0|-|x|x|-|-|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dill/0.3.7-GCCcore-12.3.0|x|x|x|x|x|x| +|dill/0.3.7-GCCcore-12.2.0|x|x|x|x|x|x| +|dill/0.3.6-GCCcore-11.3.0|x|x|x|x|x|x| +|dill/0.3.4-GCCcore-11.2.0|x|x|x|x|x|x| +|dill/0.3.4-GCCcore-10.3.0|x|x|x|-|x|x| +|dill/0.3.3-GCCcore-10.2.0|-|x|x|x|x|x| +|dill/0.3.3-GCCcore-9.3.0|-|x|x|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dlib.md index bc60fdfdc071..02c1ddde2096 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dlib.md @@ -6,6 +6,10 @@ hide: dlib ==== + +Dlib is a modern C++ toolkit containing machine learningalgorithms and tools for creating complex software in C++ to solve real worldproblems. It is used in both industry and academia in a wide range of domainsincluding robotics, embedded devices, mobile phones, and large high performancecomputing environments. + +https://github.com/davisking/dlib # Available modules @@ -17,9 +21,9 @@ To start using dlib, load one of these modules using a `module load` command lik module load dlib/19.22-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dlib/19.22-foss-2021a-CUDA-11.3.1|-|-|-|-|x|-|-|-| -|dlib/19.22-foss-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dlib/19.22-foss-2021a-CUDA-11.3.1|-|-|-|-|x|-| +|dlib/19.22-foss-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dm-haiku.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dm-haiku.md index 37d52316bd86..ddd562f17302 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dm-haiku.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dm-haiku.md @@ -6,6 +6,10 @@ hide: dm-haiku ======== + +Haiku is a simple neural network library for JAX developed by some of the authors of Sonnet, a neuralnetwork library for TensorFlow. + +https://github.com/deepmind/dm-haiku # Available modules @@ -17,8 +21,15 @@ To start using dm-haiku, load one of these modules using a `module load` command module load dm-haiku/0.0.9-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dm-haiku/0.0.9-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| + + +### dm-haiku/0.0.9-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dm-haiku/0.0.9-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| +dm-haiku-0.0.9, jmp-0.0.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dm-tree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dm-tree.md index ff8e3dbf510a..fd8a5700a4ea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dm-tree.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dm-tree.md @@ -6,6 +6,10 @@ hide: dm-tree ======= + +dm-tree provides tree, a library for working with nested data structures. In a way,tree generalizes the builtin map function which only supports flat sequences, andallows to apply a function to each "leaf" preserving the overall structure. + +https://github.com/deepmind/tree # Available modules @@ -17,11 +21,11 @@ To start using dm-tree, load one of these modules using a `module load` command module load dm-tree/0.1.8-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dm-tree/0.1.8-GCCcore-11.3.0|-|-|x|-|x|-|-|-| -|dm-tree/0.1.6-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|dm-tree/0.1.5-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|dm-tree/0.1.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dm-tree/0.1.8-GCCcore-11.3.0|x|x|x|x|x|x| +|dm-tree/0.1.6-GCCcore-10.3.0|x|x|x|x|x|x| +|dm-tree/0.1.5-GCCcore-10.2.0|x|x|x|x|x|x| +|dm-tree/0.1.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dorado.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dorado.md index 3f65d1068c3b..a672e35c905d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dorado.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dorado.md @@ -6,6 +6,10 @@ hide: dorado ====== + +Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads. + +https://github.com/nanoporetech/dorado # Available modules @@ -14,13 +18,14 @@ The overview below shows which dorado installations are available per HPC-UGent To start using dorado, load one of these modules using a `module load` command like: ```shell -module load dorado/0.3.1-foss-2022a-CUDA-11.7.0 +module load dorado/0.5.1-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dorado/0.3.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|dorado/0.3.0-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|dorado/0.1.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dorado/0.5.1-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|dorado/0.3.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|dorado/0.3.0-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|dorado/0.1.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/double-conversion.md b/mkdocs/docs/HPC/only/gent/available_software/detail/double-conversion.md index d4ef48278f39..8376cce9564a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/double-conversion.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/double-conversion.md @@ -6,6 +6,10 @@ hide: double-conversion ================= + +Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles. + +https://github.com/google/double-conversion # Available modules @@ -14,17 +18,18 @@ The overview below shows which double-conversion installations are available per To start using double-conversion, load one of these modules using a `module load` command like: ```shell -module load double-conversion/3.2.1-GCCcore-12.2.0 +module load double-conversion/3.3.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|double-conversion/3.2.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|double-conversion/3.2.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|double-conversion/3.1.5-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|double-conversion/3.1.5-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|double-conversion/3.1.5-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|double-conversion/3.1.5-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|double-conversion/3.1.4-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|double-conversion/3.3.0-GCCcore-12.3.0|x|x|x|x|x|x| +|double-conversion/3.2.1-GCCcore-12.2.0|x|x|x|x|x|x| +|double-conversion/3.2.0-GCCcore-11.3.0|x|x|x|x|x|x| +|double-conversion/3.1.5-GCCcore-11.2.0|x|x|x|x|x|x| +|double-conversion/3.1.5-GCCcore-10.3.0|x|x|x|x|x|x| +|double-conversion/3.1.5-GCCcore-10.2.0|x|x|x|x|x|x| +|double-conversion/3.1.5-GCCcore-9.3.0|-|x|x|-|x|x| +|double-conversion/3.1.4-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/drmaa-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/drmaa-python.md new file mode 100644 index 000000000000..5ac19f58ac08 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/drmaa-python.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +drmaa-python +============ + + +Distributed Resource Management Application API (DRMAA) bindings for Python. + +https://github.com/pygridtools/drmaa-python +# Available modules + + +The overview below shows which drmaa-python installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using drmaa-python, load one of these modules using a `module load` command like: + +```shell +module load drmaa-python/0.7.9-GCCcore-12.2.0-slurm +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|drmaa-python/0.7.9-GCCcore-12.2.0-slurm|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dtcwt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dtcwt.md index 347c2e4f79a8..5d2df7f4b92a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/dtcwt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dtcwt.md @@ -6,6 +6,10 @@ hide: dtcwt ===== + +Dual-Tree Complex Wavelet Transform library for Python + +https://github.com/rjw57/dtcwt # Available modules @@ -17,8 +21,8 @@ To start using dtcwt, load one of these modules using a `module load` command li module load dtcwt/0.12.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|dtcwt/0.12.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dtcwt/0.12.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/duplex-tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/duplex-tools.md index 0272aeba8526..fcc2ce363f14 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/duplex-tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/duplex-tools.md @@ -6,6 +6,10 @@ hide: duplex-tools ============ + +Duplex Tools contains a set of utilities for dealing with Duplex sequencing data. Tools are provided to identify and prepare duplex pairs for basecalling by Dorado (recommended) and Guppy, and for recovering simplex basecalls from incorrectly concatenated pairs. + +https://github.com/nanoporetech/duplex-tools # Available modules @@ -17,9 +21,22 @@ To start using duplex-tools, load one of these modules using a `module load` com module load duplex-tools/0.3.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|duplex-tools/0.3.3-foss-2022a|x|x|x|x|x|x| +|duplex-tools/0.3.1-foss-2022a|x|x|x|x|x|x| + + +### duplex-tools/0.3.3-foss-2022a + +This is a list of extensions included in the module: + +duplex-tools-0.3.3, iso8601-1.1.0, mappy-2.24, natsort-8.4.0, pyfastx-1.1.0, vbz-h5py-plugin-1.0.1 + +### duplex-tools/0.3.1-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|duplex-tools/0.3.3-foss-2022a|x|x|x|x|x|x|x|x| -|duplex-tools/0.3.1-foss-2022a|x|x|x|x|x|x|x|x| +duplex-tools-0.3.1, iso8601-1.1.0, lib-pod5-0.1.5, mappy-2.24, natsort-8.3.1, pod5-0.1.5, pyfastx-0.9.1, vbz-h5py-plugin-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/dynesty.md b/mkdocs/docs/HPC/only/gent/available_software/detail/dynesty.md new file mode 100644 index 000000000000..4d98d607812f --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/dynesty.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +dynesty +======= + + +dynesty is a Pure Python, MIT-licensed Dynamic Nested Sampling packagefor estimating Bayesian posteriors and evidences. + +https://dynesty.readthedocs.io/ +# Available modules + + +The overview below shows which dynesty installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using dynesty, load one of these modules using a `module load` command like: + +```shell +module load dynesty/2.1.3-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|dynesty/2.1.3-foss-2023a|x|x|x|x|x|x| + + +### dynesty/2.1.3-foss-2023a + +This is a list of extensions included in the module: + +coverage-6.5.0, coveralls-3.3.1, dynesty-2.1.3, pytest-cov-4.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/eSpeak-NG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/eSpeak-NG.md index 77e64c3942a5..cb852ccffb86 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/eSpeak-NG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/eSpeak-NG.md @@ -6,6 +6,10 @@ hide: eSpeak-NG ========= + +The eSpeak NG is a compact open source software text-to-speech synthesizerfor Linux, Windows, Android and other operating systems.It supports more than 100 languages and accents.It is based on the eSpeak engine created by Jonathan Duddington. + +https://github.com/espeak-ng/espeak-ng # Available modules @@ -17,8 +21,8 @@ To start using eSpeak-NG, load one of these modules using a `module load` comman module load eSpeak-NG/1.50-gompi-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|eSpeak-NG/1.50-gompi-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|eSpeak-NG/1.50-gompi-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ebGSEA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ebGSEA.md new file mode 100644 index 000000000000..428778b76db8 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ebGSEA.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +ebGSEA +====== + + +Gene Set Enrichment Analysis is one of the most common tasks in the analysis of omic data, and is critical for biological interpretation. In the context of Epigenome Wide Association Studies (EWAS), which typically rank individual cytosines according to the level of differential methylation, enrichment analysis of biological pathways is challenging due to differences in CpG/probe density between genes. + +https://github.com/aet21/ebGSEA +# Available modules + + +The overview below shows which ebGSEA installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using ebGSEA, load one of these modules using a `module load` command like: + +```shell +module load ebGSEA/0.1.0-foss-2022a-R-4.2.1 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ebGSEA/0.1.0-foss-2022a-R-4.2.1|x|x|x|x|x|x| + + +### ebGSEA/0.1.0-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +ebGSEA-0.1.0, kpmt-0.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ecCodes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ecCodes.md index 633a884eb831..61ba63795d3b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ecCodes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ecCodes.md @@ -6,6 +6,10 @@ hide: ecCodes ======= + +ecCodes is a package developed by ECMWF which provides an application programming interface and a set of tools for decoding and encoding messages in the following formats: WMO FM-92 GRIB edition 1 and edition 2, WMO FM-94 BUFR edition 3 and edition 4, WMO GTS abbreviated header (only decoding). + +https://software.ecmwf.int/wiki/display/ECC/ecCodes+Home # Available modules @@ -17,10 +21,10 @@ To start using ecCodes, load one of these modules using a `module load` command module load ecCodes/2.24.2-gompi-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ecCodes/2.24.2-gompi-2021b|x|x|x|x|x|x|x|x| -|ecCodes/2.22.1-gompi-2021a|x|x|x|-|x|x|x|x| -|ecCodes/2.15.0-iimpi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ecCodes/2.24.2-gompi-2021b|x|x|x|x|x|x| +|ecCodes/2.22.1-gompi-2021a|x|x|x|-|x|x| +|ecCodes/2.15.0-iimpi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/edlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/edlib.md index 185cb95cbac6..566f591f1ec9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/edlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/edlib.md @@ -6,6 +6,10 @@ hide: edlib ===== + +Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance. + +https://martinsos.github.io/edlib # Available modules @@ -17,15 +21,15 @@ To start using edlib, load one of these modules using a `module load` command li module load edlib/1.3.9-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|edlib/1.3.9-GCC-11.3.0|x|x|x|x|x|x|x|x| -|edlib/1.3.9-GCC-11.2.0|x|x|x|-|x|x|x|x| -|edlib/1.3.9-GCC-10.3.0|x|x|x|-|x|x|x|x| -|edlib/1.3.9-GCC-10.2.0|-|x|x|x|x|x|x|x| -|edlib/1.3.8.post2-iccifort-2020.1.217-Python-3.8.2|-|x|x|-|x|-|-|-| -|edlib/1.3.8.post1-iccifort-2019.5.281-Python-3.7.4|-|x|x|-|x|-|-|-| -|edlib/1.3.8.post1-GCC-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| -|edlib/1.3.8.post1-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|edlib/1.3.9-GCC-11.3.0|x|x|x|x|x|x| +|edlib/1.3.9-GCC-11.2.0|x|x|x|-|x|x| +|edlib/1.3.9-GCC-10.3.0|x|x|x|-|x|x| +|edlib/1.3.9-GCC-10.2.0|-|x|x|x|x|x| +|edlib/1.3.8.post2-iccifort-2020.1.217-Python-3.8.2|-|x|x|-|x|-| +|edlib/1.3.8.post1-iccifort-2019.5.281-Python-3.7.4|-|x|x|-|x|-| +|edlib/1.3.8.post1-GCC-9.3.0-Python-3.8.2|-|x|x|-|x|x| +|edlib/1.3.8.post1-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/eggnog-mapper.md b/mkdocs/docs/HPC/only/gent/available_software/detail/eggnog-mapper.md index e18b461b6261..f9e8e298ee65 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/eggnog-mapper.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/eggnog-mapper.md @@ -6,6 +6,10 @@ hide: eggnog-mapper ============= + +EggNOG-mapper is a tool for fast functional annotation of novelsequences. It uses precomputed orthologous groups and phylogenies from theeggNOG database (http://eggnog5.embl.de) to transfer functional information fromfine-grained orthologs only. Common uses of eggNOG-mapper include the annotationof novel genomes, transcriptomes or even metagenomic gene catalogs. + +https://github.com/eggnogdb/eggnog-mapper # Available modules @@ -17,9 +21,9 @@ To start using eggnog-mapper, load one of these modules using a `module load` co module load eggnog-mapper/2.1.10-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|eggnog-mapper/2.1.10-foss-2020b|x|x|x|x|x|x|x|x| -|eggnog-mapper/2.1.4-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|eggnog-mapper/2.1.10-foss-2020b|x|x|x|x|x|x| +|eggnog-mapper/2.1.4-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/einops.md b/mkdocs/docs/HPC/only/gent/available_software/detail/einops.md index a317baa5dc75..cce50abb5c3c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/einops.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/einops.md @@ -6,6 +6,10 @@ hide: einops ====== + +Flexible and powerful tensor operations for readable and reliable code.Supports numpy, pytorch, tensorflow, jax, and others. + +https://einops.rocks/ # Available modules @@ -17,9 +21,9 @@ To start using einops, load one of these modules using a `module load` command l module load einops/0.4.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|einops/0.4.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|einops/0.4.1-GCCcore-10.3.0|x|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|einops/0.4.1-GCCcore-11.3.0|x|x|x|x|x|x| +|einops/0.4.1-GCCcore-10.3.0|x|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/elfutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/elfutils.md index f6ca592ec64a..c5307126c779 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/elfutils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/elfutils.md @@ -6,6 +6,10 @@ hide: elfutils ======== + +The elfutils project provides libraries and tools for ELF files and DWARF data. + +https://elfutils.org/ # Available modules @@ -17,12 +21,12 @@ To start using elfutils, load one of these modules using a `module load` command module load elfutils/0.187-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|elfutils/0.187-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|elfutils/0.185-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|elfutils/0.185-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|elfutils/0.185-GCCcore-8.3.0|x|-|-|-|x|-|-|-| -|elfutils/0.183-GCCcore-10.2.0|-|-|x|x|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|elfutils/0.187-GCCcore-11.3.0|x|x|x|x|x|x| +|elfutils/0.185-GCCcore-11.2.0|x|x|x|x|x|x| +|elfutils/0.185-GCCcore-10.3.0|x|x|x|x|x|x| +|elfutils/0.185-GCCcore-8.3.0|x|-|-|-|x|-| +|elfutils/0.183-GCCcore-10.2.0|-|-|x|x|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/elprep.md b/mkdocs/docs/HPC/only/gent/available_software/detail/elprep.md index 1f489ca92052..9485c04193a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/elprep.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/elprep.md @@ -6,6 +6,10 @@ hide: elprep ====== + +elPrep is a high-performance tool for analyzing .sam/.bam files (up to and including variant calling) in sequencing pipelines. + +https://github.com/ExaScience/elprep # Available modules @@ -17,8 +21,8 @@ To start using elprep, load one of these modules using a `module load` command l module load elprep/5.1.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|elprep/5.1.1|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|elprep/5.1.1|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/enchant-2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/enchant-2.md index d4b13d832d0c..0ac1d3c034c6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/enchant-2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/enchant-2.md @@ -6,6 +6,10 @@ hide: enchant-2 ========= + +Enchant aims to provide a simple but comprehensive abstraction for dealingwith different spell checking libraries in a consistent way. A client, suchas a text editor or word processor, need not know anything about a specificspell-checker, and since all back-ends are plugins, new spell-checkers canbe added without needing any change to the program using Enchant. + +https://github.com/AbiWord/enchant # Available modules @@ -17,8 +21,8 @@ To start using enchant-2, load one of these modules using a `module load` comman module load enchant-2/2.3.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|enchant-2/2.3.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|enchant-2/2.3.3-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/epiScanpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/epiScanpy.md index 48e7d9ed8ac3..b844cb1db96d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/epiScanpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/epiScanpy.md @@ -6,6 +6,10 @@ hide: epiScanpy ========= + +EpiScanpy is a toolkit to analyse single-cell open chromatin(scATAC-seq) and single-cell DNA methylation (for example scBS-seq)data. EpiScanpy is the epigenomic extension of the very popular scRNA-seqanalysis tool Scanpy (Genome Biology, 2018) [Wolf18]. + +https://github.com/colomemaria/episcanpy # Available modules @@ -17,9 +21,22 @@ To start using epiScanpy, load one of these modules using a `module load` comman module load epiScanpy/0.4.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|epiScanpy/0.4.0-foss-2022a|x|x|x|x|x|x| +|epiScanpy/0.3.1-foss-2021a|-|x|x|-|x|x| + + +### epiScanpy/0.4.0-foss-2022a + +This is a list of extensions included in the module: + +bamnostic-1.1.8, dunamai-1.16.0, episcanpy-0.4.0, get_version-3.5.4, kneed-0.8.2, legacy-api-wrap-1.2, pyliftover-0.4, python-louvain-0.16 + +### epiScanpy/0.3.1-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|epiScanpy/0.4.0-foss-2022a|x|x|x|x|x|x|x|x| -|epiScanpy/0.3.1-foss-2021a|-|x|x|-|x|x|x|x| +bamnostic-1.1.7, episcanpy-0.3.1, get_version-3.2, legacy-api-wrap-1.2, pyliftover-0.4, python-louvain-0.15 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/exiv2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/exiv2.md index 02fe3c01a201..91396b9480f7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/exiv2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/exiv2.md @@ -6,6 +6,10 @@ hide: exiv2 ===== + +Exiv2 is a Cross-platform C++ library and a command line utility to manage image metadata. + +https://exiv2.org # Available modules @@ -17,9 +21,9 @@ To start using exiv2, load one of these modules using a `module load` command li module load exiv2/0.27.5-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|exiv2/0.27.5-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|exiv2/0.27.4-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|exiv2/0.27.5-GCCcore-11.2.0|x|x|x|x|x|x| +|exiv2/0.27.4-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/expat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/expat.md index ab29ba23a85f..86c0052fb3f9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/expat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/expat.md @@ -6,6 +6,10 @@ hide: expat ===== + +Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags) + +https://libexpat.github.io # Available modules @@ -14,19 +18,20 @@ The overview below shows which expat installations are available per HPC-UGent T To start using expat, load one of these modules using a `module load` command like: ```shell -module load expat/2.5.0-GCCcore-12.3.0 +module load expat/2.5.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|expat/2.5.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|expat/2.4.9-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|expat/2.4.8-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|expat/2.4.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|expat/2.2.9-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|expat/2.2.9-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|expat/2.2.9-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|expat/2.2.7-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|expat/2.2.6-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|expat/2.5.0-GCCcore-13.2.0|x|x|x|x|x|x| +|expat/2.5.0-GCCcore-12.3.0|x|x|x|x|x|x| +|expat/2.4.9-GCCcore-12.2.0|x|x|x|x|x|x| +|expat/2.4.8-GCCcore-11.3.0|x|x|x|x|x|x| +|expat/2.4.1-GCCcore-11.2.0|x|x|x|x|x|x| +|expat/2.2.9-GCCcore-10.3.0|x|x|x|x|x|x| +|expat/2.2.9-GCCcore-10.2.0|x|x|x|x|x|x| +|expat/2.2.9-GCCcore-9.3.0|x|x|x|x|x|x| +|expat/2.2.7-GCCcore-8.3.0|x|x|x|x|x|x| +|expat/2.2.6-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/expecttest.md b/mkdocs/docs/HPC/only/gent/available_software/detail/expecttest.md index 56ac1dfadef8..145c7af36c83 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/expecttest.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/expecttest.md @@ -6,6 +6,10 @@ hide: expecttest ========== + +This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output. + +https://github.com/ezyang/expecttest # Available modules @@ -14,14 +18,16 @@ The overview below shows which expecttest installations are available per HPC-UG To start using expecttest, load one of these modules using a `module load` command like: ```shell -module load expecttest/0.1.3-GCCcore-11.3.0 +module load expecttest/0.1.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|expecttest/0.1.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|expecttest/0.1.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|expecttest/0.1.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|expecttest/0.1.3-GCCcore-10.2.0|x|-|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|expecttest/0.1.5-GCCcore-12.3.0|x|x|x|x|x|x| +|expecttest/0.1.3-GCCcore-12.2.0|x|x|x|x|x|x| +|expecttest/0.1.3-GCCcore-11.3.0|x|x|x|x|x|x| +|expecttest/0.1.3-GCCcore-11.2.0|x|x|x|x|x|x| +|expecttest/0.1.3-GCCcore-10.3.0|x|x|x|x|x|x| +|expecttest/0.1.3-GCCcore-10.2.0|x|-|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fasta-reader.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fasta-reader.md new file mode 100644 index 000000000000..fe8d73f0f6d3 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fasta-reader.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +fasta-reader +============ + + +FASTA file reader + +https://github.com/EBI-Metagenomics/fasta-reader-py +# Available modules + + +The overview below shows which fasta-reader installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using fasta-reader, load one of these modules using a `module load` command like: + +```shell +module load fasta-reader/3.0.2-GCC-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|fasta-reader/3.0.2-GCC-12.3.0|x|x|x|x|x|x| + + +### fasta-reader/3.0.2-GCC-12.3.0 + +This is a list of extensions included in the module: + +fasta-reader-3.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fastahack.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fastahack.md index 7d045a74c501..66c5ca155304 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fastahack.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fastahack.md @@ -6,6 +6,10 @@ hide: fastahack ========= + +Utilities for indexing and sequence extraction from FASTA files. + +https://github.com/ekg/fastahack # Available modules @@ -14,11 +18,12 @@ The overview below shows which fastahack installations are available per HPC-UGe To start using fastahack, load one of these modules using a `module load` command like: ```shell -module load fastahack/1.0.0-GCCcore-10.2.0 +module load fastahack/1.0.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|fastahack/1.0.0-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|fastahack/1.0.0-GCCcore-11.3.0|x|x|x|x|x|x| +|fastahack/1.0.0-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fastai.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fastai.md index bf0ca93af6de..8cc7961a7ad1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fastai.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fastai.md @@ -6,6 +6,10 @@ hide: fastai ====== + +The fastai deep learning library. + +https://www.fast.ai/ # Available modules @@ -17,8 +21,15 @@ To start using fastai, load one of these modules using a `module load` command l module load fastai/2.7.10-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|fastai/2.7.10-foss-2022a|x|x|x|x|x|x| + + +### fastai/2.7.10-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|fastai/2.7.10-foss-2022a|x|x|x|x|x|x|x|x| +fastai-2.7.10, fastcore-1.5.27, fastdownload-0.0.7, fastprogress-1.0.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fastp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fastp.md index edaa9a2fd257..76280a7c699b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fastp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fastp.md @@ -6,6 +6,10 @@ hide: fastp ===== + +A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance. + +https://github.com/OpenGene/fastp # Available modules @@ -17,11 +21,11 @@ To start using fastp, load one of these modules using a `module load` command li module load fastp/0.23.2-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|fastp/0.23.2-GCC-11.2.0|x|x|x|-|x|x|x|x| -|fastp/0.20.1-iccifort-2020.1.217|-|x|x|-|x|-|-|-| -|fastp/0.20.0-iccifort-2019.5.281|-|x|-|-|-|-|-|-| -|fastp/0.20.0-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|fastp/0.23.2-GCC-11.2.0|x|x|x|-|x|x| +|fastp/0.20.1-iccifort-2020.1.217|-|x|x|-|x|-| +|fastp/0.20.0-iccifort-2019.5.281|-|x|-|-|-|-| +|fastp/0.20.0-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fermi-lite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fermi-lite.md index a28b95eb43e8..26b22903408b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fermi-lite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fermi-lite.md @@ -6,6 +6,10 @@ hide: fermi-lite ========== + +Standalone C library for assembling Illumina short reads in small regions. + +https://github.com/lh3/fermi-lite # Available modules @@ -17,8 +21,8 @@ To start using fermi-lite, load one of these modules using a `module load` comma module load fermi-lite/20190320-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|fermi-lite/20190320-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|fermi-lite/20190320-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/festival.md b/mkdocs/docs/HPC/only/gent/available_software/detail/festival.md index d085501652f8..3c0934d4563a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/festival.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/festival.md @@ -6,6 +6,10 @@ hide: festival ======== + +University of Edinburgh's Festival Speech Synthesis Systems is a free softwaremulti-lingual speech synthesis workbench that runs on multiple-platformsoffering black box text to speech, as well as an open architecture forresearch in speech synthesis.It designed as a component of large speech technology systems. + +['http://festvox.org/festival/'] # Available modules @@ -17,8 +21,8 @@ To start using festival, load one of these modules using a `module load` command module load festival/2.5.0-GCCcore-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|festival/2.5.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|festival/2.5.0-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fetchMG.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fetchMG.md index 9cca152d652d..28a816a1fa91 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fetchMG.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fetchMG.md @@ -6,6 +6,10 @@ hide: fetchMG ======= + +The program “fetchMG” was written to extract the 40 MGs from genomes and metagenomes in an easy and accurate manner. + +https://vm-lux.embl.de/~mende/fetchMG/about.html # Available modules @@ -17,8 +21,8 @@ To start using fetchMG, load one of these modules using a `module load` command module load fetchMG/1.0-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|fetchMG/1.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|fetchMG/1.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ffnvcodec.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ffnvcodec.md index 2a885ff078c8..76c58b843d22 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ffnvcodec.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ffnvcodec.md @@ -6,6 +6,10 @@ hide: ffnvcodec ========= + +FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present(picked up dynamically). + +https://git.videolan.org/?p=ffmpeg/nv-codec-headers.git # Available modules @@ -14,11 +18,12 @@ The overview below shows which ffnvcodec installations are available per HPC-UGe To start using ffnvcodec, load one of these modules using a `module load` command like: ```shell -module load ffnvcodec/11.1.5.2 +module load ffnvcodec/12.0.16.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ffnvcodec/11.1.5.2|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ffnvcodec/12.0.16.0|x|x|x|x|x|x| +|ffnvcodec/11.1.5.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/file.md b/mkdocs/docs/HPC/only/gent/available_software/detail/file.md index 39928f0a1bb4..3cc4f130ce40 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/file.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/file.md @@ -6,6 +6,10 @@ hide: file ==== + +The file command is 'a file type guesser', that is, a command-line tool that tells you in words what kind of data a file contains. + +https://www.darwinsys.com/file/ # Available modules @@ -17,12 +21,12 @@ To start using file, load one of these modules using a `module load` command lik module load file/5.43-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|file/5.43-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|file/5.41-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|file/5.39-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|file/5.38-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|file/5.38-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|file/5.43-GCCcore-11.3.0|x|x|x|x|x|x| +|file/5.41-GCCcore-11.2.0|x|x|x|x|x|x| +|file/5.39-GCCcore-10.2.0|-|x|x|x|x|x| +|file/5.38-GCCcore-9.3.0|-|x|x|-|x|x| +|file/5.38-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/filevercmp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/filevercmp.md index 1dfebbc63253..d1341ee474dd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/filevercmp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/filevercmp.md @@ -6,6 +6,10 @@ hide: filevercmp ========== + +filevercmp function as in sort --version-sort. + +https://github.com/ekg/filevercmp # Available modules @@ -14,11 +18,12 @@ The overview below shows which filevercmp installations are available per HPC-UG To start using filevercmp, load one of these modules using a `module load` command like: ```shell -module load filevercmp/20191210-GCCcore-10.2.0 +module load filevercmp/20191210-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|filevercmp/20191210-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|filevercmp/20191210-GCCcore-11.3.0|x|x|x|x|x|x| +|filevercmp/20191210-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/finder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/finder.md index 9b421581a031..d66968683df0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/finder.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/finder.md @@ -6,6 +6,10 @@ hide: finder ====== + +finder is a gene annotator pipeline which automates the process of downloading short reads,aligning them and using the assembled transcripts to generate gene annotations. + +https://github.com/sagnikbanerjee15/Finder/ # Available modules @@ -17,8 +21,8 @@ To start using finder, load one of these modules using a `module load` command l module load finder/1.1.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|finder/1.1.0-foss-2021b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|finder/1.1.0-foss-2021b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flair-NLP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flair-NLP.md index 57bf319081ad..8a19c99b2000 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flair-NLP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flair-NLP.md @@ -6,6 +6,10 @@ hide: flair-NLP ========= + +A very simple framework for state-of-the-art NLP + +https://github.com/flairNLP/flair # Available modules @@ -17,9 +21,22 @@ To start using flair-NLP, load one of these modules using a `module load` comman module load flair-NLP/0.11.3-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|flair-NLP/0.11.3-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|flair-NLP/0.11.3-foss-2021a|x|x|x|-|x|x| + + +### flair-NLP/0.11.3-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +bpemb-0.3.3, conllu-4.4.2, Deprecated-1.2.13, flair-0.11.3, ftfy-6.1.1, gdown-4.4.0, huggingface_hub-0.7.0, importlib_metadata-3.10.1, Janome-0.4.2, konoha-4.6.5, langdetect-1.0.9, mpld3-0.5.8, overrides-3.1.0, pptree-3.1, segtok-1.5.11, sqlitedict-2.0.0, transformers-4.19.2, Wikipedia-API-0.5.4, wrapt-1.14.1 + +### flair-NLP/0.11.3-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|flair-NLP/0.11.3-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|flair-NLP/0.11.3-foss-2021a|x|x|x|-|x|x|x|x| +bpemb-0.3.3, conllu-4.4.2, Deprecated-1.2.13, flair-0.11.3, ftfy-6.1.1, gdown-4.4.0, huggingface_hub-0.7.0, importlib_metadata-3.10.1, Janome-0.4.2, konoha-4.6.5, langdetect-1.0.9, mpld3-0.5.8, overrides-3.1.0, pptree-3.1, segtok-1.5.11, sqlitedict-2.0.0, transformers-4.19.2, Wikipedia-API-0.5.4, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers-python.md index ddc81e564f54..e525a85e5359 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers-python.md @@ -6,6 +6,10 @@ hide: flatbuffers-python ================== + +Python Flatbuffers runtime library. + +https://github.com/google/flatbuffers/ # Available modules @@ -14,14 +18,16 @@ The overview below shows which flatbuffers-python installations are available pe To start using flatbuffers-python, load one of these modules using a `module load` command like: ```shell -module load flatbuffers-python/2.0-GCCcore-11.3.0 +module load flatbuffers-python/23.5.26-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|flatbuffers-python/2.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|flatbuffers-python/2.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|flatbuffers-python/2.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|flatbuffers-python/1.12-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|flatbuffers-python/23.5.26-GCCcore-12.3.0|x|x|x|x|x|x| +|flatbuffers-python/23.1.4-GCCcore-12.2.0|x|x|x|x|x|x| +|flatbuffers-python/2.0-GCCcore-11.3.0|x|x|x|x|x|x| +|flatbuffers-python/2.0-GCCcore-11.2.0|x|x|x|x|x|x| +|flatbuffers-python/2.0-GCCcore-10.3.0|x|x|x|x|x|x| +|flatbuffers-python/1.12-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers.md index f789c2832fcf..9ad08dbad93f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flatbuffers.md @@ -6,6 +6,10 @@ hide: flatbuffers =========== + +FlatBuffers: Memory Efficient Serialization Library + +https://github.com/google/flatbuffers/ # Available modules @@ -14,16 +18,25 @@ The overview below shows which flatbuffers installations are available per HPC-U To start using flatbuffers, load one of these modules using a `module load` command like: ```shell -module load flatbuffers/2.0.7-GCCcore-11.3.0 +module load flatbuffers/23.5.26-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|flatbuffers/23.5.26-GCCcore-12.3.0|x|x|x|x|x|x| +|flatbuffers/23.1.4-GCCcore-12.2.0|x|x|x|x|x|x| +|flatbuffers/2.0.7-GCCcore-11.3.0|x|x|x|x|x|x| +|flatbuffers/2.0.0-GCCcore-11.2.0|x|x|x|x|x|x| +|flatbuffers/2.0.0-GCCcore-10.3.0|x|x|x|x|x|x| +|flatbuffers/1.12.0-GCCcore-10.2.0|x|x|x|x|x|x| +|flatbuffers/1.12.0-GCCcore-9.3.0|-|x|x|-|x|x| +|flatbuffers/1.12.0-GCCcore-8.3.0|-|x|x|-|x|x| + + +### flatbuffers/2.0.7-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|flatbuffers/2.0.7-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|flatbuffers/2.0.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|flatbuffers/2.0.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|flatbuffers/1.12.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|flatbuffers/1.12.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|flatbuffers/1.12.0-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +flatbuffers-2.0.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flex.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flex.md index 5a19c03cfda0..ef9878b5d5db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flex.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flex.md @@ -6,6 +6,10 @@ hide: flex ==== + +Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. + +http://flex.sourceforge.net/ # Available modules @@ -14,22 +18,23 @@ The overview below shows which flex installations are available per HPC-UGent Ti To start using flex, load one of these modules using a `module load` command like: ```shell -module load flex/2.6.4-GCCcore-12.3.0 +module load flex/2.6.4-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|flex/2.6.4-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|flex/2.6.4-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|flex/2.6.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|flex/2.6.4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|flex/2.6.4-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|flex/2.6.4-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|flex/2.6.4-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|flex/2.6.4-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|flex/2.6.4-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|flex/2.6.4|x|x|x|x|x|x|x|x| -|flex/2.6.3|-|-|-|-|-|x|-|x| -|flex/2.5.39-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|flex/2.6.4-GCCcore-13.2.0|x|x|x|x|x|x| +|flex/2.6.4-GCCcore-12.3.0|x|x|x|x|x|x| +|flex/2.6.4-GCCcore-12.2.0|x|x|x|x|x|x| +|flex/2.6.4-GCCcore-11.3.0|x|x|x|x|x|x| +|flex/2.6.4-GCCcore-11.2.0|x|x|x|x|x|x| +|flex/2.6.4-GCCcore-10.3.0|x|x|x|x|x|x| +|flex/2.6.4-GCCcore-10.2.0|x|x|x|x|x|x| +|flex/2.6.4-GCCcore-9.3.0|x|x|x|x|x|x| +|flex/2.6.4-GCCcore-8.3.0|x|x|x|x|x|x| +|flex/2.6.4-GCCcore-8.2.0|-|x|-|-|-|-| +|flex/2.6.4|x|x|x|x|x|x| +|flex/2.6.3|x|x|x|x|x|x| +|flex/2.5.39-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flit.md index 5b303d958040..8bd914682fa2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flit.md @@ -6,6 +6,10 @@ hide: flit ==== + +A simple packaging tool for simple packages. + +https://github.com/pypa/flit # Available modules @@ -14,11 +18,25 @@ The overview below shows which flit installations are available per HPC-UGent Ti To start using flit, load one of these modules using a `module load` command like: ```shell -module load flit/3.9.0-GCCcore-12.3.0 +module load flit/3.9.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|flit/3.9.0-GCCcore-13.2.0|x|x|x|x|x|x| +|flit/3.9.0-GCCcore-12.3.0|x|x|x|x|x|x| + + +### flit/3.9.0-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +certifi-2023.7.22, charset-normalizer-3.3.1, docutils-0.20.1, flit-3.9.0, flit_scm-1.7.0, idna-3.4, packaging-23.2, requests-2.31.0, setuptools-scm-8.0.4, tomli_w-1.0.0, typing_extensions-4.8.0, urllib3-2.0.7 + +### flit/3.9.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|flit/3.9.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| +certifi-2023.5.7, charset-normalizer-3.1.0, docutils-0.20.1, flit-3.9.0, flit_scm-1.7.0, idna-3.4, packaging-23.1, requests-2.31.0, setuptools_scm-7.1.0, tomli_w-1.0.0, typing_extensions-4.6.3, urllib3-1.26.16 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/flowFDA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/flowFDA.md index 84a40c4fbbca..a4ee4901df1f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/flowFDA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/flowFDA.md @@ -6,6 +6,10 @@ hide: flowFDA ======= + +R package for analysing flow cytometry experiments with model based clustering, functional principal component analysis + +https://github.com/FMKerckhof/flowFDA # Available modules @@ -17,8 +21,8 @@ To start using flowFDA, load one of these modules using a `module load` command module load flowFDA/0.99-20220602-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|flowFDA/0.99-20220602-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|flowFDA/0.99-20220602-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fmt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fmt.md index 36c746b34916..d344d146a84d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fmt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fmt.md @@ -6,6 +6,10 @@ hide: fmt === + +fmt (formerly cppformat) is an open-source formatting library. + +http://fmtlib.net/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which fmt installations are available per HPC-UGent Tie To start using fmt, load one of these modules using a `module load` command like: ```shell -module load fmt/8.1.1-GCCcore-11.2.0 +module load fmt/10.1.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|fmt/8.1.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|fmt/7.1.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|fmt/10.1.0-GCCcore-12.3.0|x|x|x|x|x|x| +|fmt/8.1.1-GCCcore-11.2.0|x|x|x|-|x|x| +|fmt/7.1.1-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fontconfig.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fontconfig.md index 9a938c95f31a..7a70a22e35fe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fontconfig.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fontconfig.md @@ -6,6 +6,10 @@ hide: fontconfig ========== + +Fontconfig is a library designed to provide system-wide font configuration, customization and application access. + +http://www.freedesktop.org/software/fontconfig # Available modules @@ -17,16 +21,16 @@ To start using fontconfig, load one of these modules using a `module load` comma module load fontconfig/2.14.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|fontconfig/2.14.2-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|fontconfig/2.14.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|fontconfig/2.14.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|fontconfig/2.13.94-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|fontconfig/2.13.93-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|fontconfig/2.13.92-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|fontconfig/2.13.92-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|fontconfig/2.13.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|fontconfig/2.13.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|fontconfig/2.14.2-GCCcore-12.3.0|x|x|x|x|x|x| +|fontconfig/2.14.1-GCCcore-12.2.0|x|x|x|x|x|x| +|fontconfig/2.14.0-GCCcore-11.3.0|x|x|x|x|x|x| +|fontconfig/2.13.94-GCCcore-11.2.0|x|x|x|x|x|x| +|fontconfig/2.13.93-GCCcore-10.3.0|x|x|x|x|x|x| +|fontconfig/2.13.92-GCCcore-10.2.0|x|x|x|x|x|x| +|fontconfig/2.13.92-GCCcore-9.3.0|x|x|x|x|x|x| +|fontconfig/2.13.1-GCCcore-8.3.0|x|x|x|-|x|x| +|fontconfig/2.13.1-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/foss.md b/mkdocs/docs/HPC/only/gent/available_software/detail/foss.md index 97f46a14cbad..174d8a236bc0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/foss.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/foss.md @@ -6,6 +6,10 @@ hide: foss ==== + +GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. + +https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain # Available modules @@ -14,18 +18,19 @@ The overview below shows which foss installations are available per HPC-UGent Ti To start using foss, load one of these modules using a `module load` command like: ```shell -module load foss/2023a +module load foss/2023b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|foss/2023a|x|x|x|x|x|x|x|x| -|foss/2022b|x|x|x|x|x|x|x|x| -|foss/2022a|x|x|x|x|x|x|x|x| -|foss/2021b|x|x|x|x|x|x|x|x| -|foss/2021a|x|x|x|x|x|x|x|x| -|foss/2020b|x|x|x|x|x|x|x|x| -|foss/2020a|-|x|x|-|x|x|x|x| -|foss/2019b|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|foss/2023b|x|x|x|x|x|x| +|foss/2023a|x|x|x|x|x|x| +|foss/2022b|x|x|x|x|x|x| +|foss/2022a|x|x|x|x|x|x| +|foss/2021b|x|x|x|x|x|x| +|foss/2021a|x|x|x|x|x|x| +|foss/2020b|x|x|x|x|x|x| +|foss/2020a|-|x|x|-|x|x| +|foss/2019b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fosscuda.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fosscuda.md index 75d772b15cf8..76ef3bd174f7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fosscuda.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fosscuda.md @@ -6,6 +6,10 @@ hide: fosscuda ======== + +GCC based compiler toolchain __with CUDA support__, and including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. + +(none) # Available modules @@ -17,8 +21,8 @@ To start using fosscuda, load one of these modules using a `module load` command module load fosscuda/2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|fosscuda/2020b|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|fosscuda/2020b|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/freebayes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/freebayes.md index 0b0ec140f495..54cd8be9a892 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/freebayes.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/freebayes.md @@ -6,6 +6,10 @@ hide: freebayes ========= + +Bayesian haplotype-based genetic polymorphism discovery and genotyping. + +https://github.com/freebayes/freebayes # Available modules @@ -17,8 +21,8 @@ To start using freebayes, load one of these modules using a `module load` comman module load freebayes/1.3.5-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|freebayes/1.3.5-GCC-10.2.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|freebayes/1.3.5-GCC-10.2.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/freeglut.md b/mkdocs/docs/HPC/only/gent/available_software/detail/freeglut.md index baa1ddfd3c7d..4b7b58956ced 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/freeglut.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/freeglut.md @@ -6,6 +6,10 @@ hide: freeglut ======== + +freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library. + +http://freeglut.sourceforge.net/ # Available modules @@ -17,13 +21,13 @@ To start using freeglut, load one of these modules using a `module load` command module load freeglut/3.2.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|freeglut/3.2.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|freeglut/3.2.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|freeglut/3.2.1-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|freeglut/3.2.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|freeglut/3.2.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|freeglut/3.2.1-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|freeglut/3.2.2-GCCcore-11.3.0|x|x|x|x|x|x| +|freeglut/3.2.1-GCCcore-11.2.0|x|x|x|x|x|x| +|freeglut/3.2.1-GCCcore-10.3.0|-|x|x|-|x|x| +|freeglut/3.2.1-GCCcore-10.2.0|-|x|x|x|x|x| +|freeglut/3.2.1-GCCcore-9.3.0|-|x|x|-|x|x| +|freeglut/3.2.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/freetype-py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/freetype-py.md index 783005594c64..54368a182dcc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/freetype-py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/freetype-py.md @@ -6,6 +6,10 @@ hide: freetype-py =========== + +Python binding for the freetype library + +https://github.com/rougier/freetype-py # Available modules @@ -17,8 +21,8 @@ To start using freetype-py, load one of these modules using a `module load` comm module load freetype-py/2.2.0-GCCcore-8.3.0-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|freetype-py/2.2.0-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|freetype-py/2.2.0-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/freetype.md b/mkdocs/docs/HPC/only/gent/available_software/detail/freetype.md index 1e4a80544a31..492b5f3ba5c6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/freetype.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/freetype.md @@ -6,6 +6,10 @@ hide: freetype ======== + +FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well. + +http://freetype.org # Available modules @@ -14,19 +18,20 @@ The overview below shows which freetype installations are available per HPC-UGen To start using freetype, load one of these modules using a `module load` command like: ```shell -module load freetype/2.13.0-GCCcore-12.3.0 +module load freetype/2.13.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|freetype/2.13.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|freetype/2.12.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|freetype/2.12.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|freetype/2.11.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|freetype/2.10.4-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|freetype/2.10.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|freetype/2.10.1-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|freetype/2.10.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|freetype/2.9.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|freetype/2.13.2-GCCcore-13.2.0|x|x|x|x|x|x| +|freetype/2.13.0-GCCcore-12.3.0|x|x|x|x|x|x| +|freetype/2.12.1-GCCcore-12.2.0|x|x|x|x|x|x| +|freetype/2.12.1-GCCcore-11.3.0|x|x|x|x|x|x| +|freetype/2.11.0-GCCcore-11.2.0|x|x|x|x|x|x| +|freetype/2.10.4-GCCcore-10.3.0|x|x|x|x|x|x| +|freetype/2.10.3-GCCcore-10.2.0|x|x|x|x|x|x| +|freetype/2.10.1-GCCcore-9.3.0|x|x|x|x|x|x| +|freetype/2.10.1-GCCcore-8.3.0|x|x|x|-|x|x| +|freetype/2.9.1-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/fsom.md b/mkdocs/docs/HPC/only/gent/available_software/detail/fsom.md index 73cac69101bb..d5b232ff51d6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/fsom.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/fsom.md @@ -6,6 +6,10 @@ hide: fsom ==== + +A tiny C library for managing SOM (Self-Organizing Maps) neural networks. + +https://github.com/ekg/fsom # Available modules @@ -14,11 +18,12 @@ The overview below shows which fsom installations are available per HPC-UGent Ti To start using fsom, load one of these modules using a `module load` command like: ```shell -module load fsom/20141119-GCCcore-10.2.0 +module load fsom/20151117-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|fsom/20141119-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|fsom/20151117-GCCcore-11.3.0|x|x|x|x|x|x| +|fsom/20141119-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/funannotate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/funannotate.md index 476d960c6b20..4474006c70c6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/funannotate.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/funannotate.md @@ -6,6 +6,10 @@ hide: funannotate =========== + +funannotate is a pipeline for genome annotation (built specifically for fungi, but will also work with higher eukaryotes) + +https://funannotate.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using funannotate, load one of these modules using a `module load` comm module load funannotate/1.8.13-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|funannotate/1.8.13-foss-2021b|x|x|x|x|x|x| + + +### funannotate/1.8.13-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|funannotate/1.8.13-foss-2021b|x|x|x|x|x|x|x|x| +distro-1.8.0, funannotate-1.8.13, natsort-8.3.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/g2clib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/g2clib.md index fe2d4556e92a..f15bf0b5f928 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/g2clib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/g2clib.md @@ -6,6 +6,10 @@ hide: g2clib ====== + +Library contains GRIB2 encoder/decoder ('C' version). + +https://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/ # Available modules @@ -17,9 +21,9 @@ To start using g2clib, load one of these modules using a `module load` command l module load g2clib/1.6.0-GCCcore-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|g2clib/1.6.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|g2clib/1.6.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|g2clib/1.6.0-GCCcore-9.3.0|-|x|x|-|x|x| +|g2clib/1.6.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/g2lib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/g2lib.md index 5c5d3314203c..6a892d301ddb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/g2lib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/g2lib.md @@ -6,6 +6,10 @@ hide: g2lib ===== + +Library contains GRIB2 encoder/decoder and search/indexing routines. + +https://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/ # Available modules @@ -17,8 +21,8 @@ To start using g2lib, load one of these modules using a `module load` command li module load g2lib/3.1.0-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|g2lib/3.1.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|g2lib/3.1.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/g2log.md b/mkdocs/docs/HPC/only/gent/available_software/detail/g2log.md index d470b3aad766..af027cbed3c1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/g2log.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/g2log.md @@ -6,6 +6,10 @@ hide: g2log ===== + +g2log, efficient asynchronous logger using C++11 + +https://sites.google.com/site/kjellhedstrom2//g2log-efficient-background-io-processign-with-c11 # Available modules @@ -17,8 +21,8 @@ To start using g2log, load one of these modules using a `module load` command li module load g2log/1.0-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|g2log/1.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|g2log/1.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/garnett.md b/mkdocs/docs/HPC/only/gent/available_software/detail/garnett.md index bc4ad433f093..fc6145a0fccf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/garnett.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/garnett.md @@ -6,6 +6,10 @@ hide: garnett ======= + +Garnett is a software package that faciliates automated cell type classification from single-cellexpression data. + +https://cole-trapnell-lab.github.io/garnett # Available modules @@ -17,8 +21,15 @@ To start using garnett, load one of these modules using a `module load` command module load garnett/0.1.20-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|garnett/0.1.20-foss-2020b-R-4.0.3|-|x|x|x|x|x| + + +### garnett/0.1.20-foss-2020b-R-4.0.3 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|garnett/0.1.20-foss-2020b-R-4.0.3|-|x|x|x|x|x|x|x| +garnett-0.1.20, rly-1.6.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gawk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gawk.md index 65171d88638a..e7608c9a9a36 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gawk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gawk.md @@ -6,6 +6,10 @@ hide: gawk ==== + +The awk utility interprets a special-purpose programming language that makes it possible to handlesimple data-reformatting jobs with just a few lines of code. + +https://www.gnu.org/software/gawk # Available modules @@ -17,8 +21,8 @@ To start using gawk, load one of these modules using a `module load` command lik module load gawk/5.1.0-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gawk/5.1.0-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gawk/5.1.0-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gbasis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gbasis.md index b7ad13316223..b2c574b9e64e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gbasis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gbasis.md @@ -6,6 +6,10 @@ hide: gbasis ====== + +Python library for analytical evaluation and integration of Gaussian-type basis functions and related quantities. + +https://github.com/theochem/gbasis # Available modules @@ -17,8 +21,8 @@ To start using gbasis, load one of these modules using a `module load` command l module load gbasis/20210904-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gbasis/20210904-intel-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gbasis/20210904-intel-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gc.md index 0ebddf93e4fb..3f0752ade9ef 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gc.md @@ -6,6 +6,10 @@ hide: gc == + +The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new. + +https://hboehm.info/gc/ # Available modules @@ -17,11 +21,11 @@ To start using gc, load one of these modules using a `module load` command like: module load gc/8.2.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gc/8.2.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|gc/8.0.4-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|gc/7.6.12-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|gc/7.6.12-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gc/8.2.0-GCCcore-11.2.0|x|x|x|x|x|x| +|gc/8.0.4-GCCcore-10.3.0|-|x|x|-|x|x| +|gc/7.6.12-GCCcore-9.3.0|-|x|x|-|x|x| +|gc/7.6.12-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gcccuda.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gcccuda.md index 7d7589e20059..a726fbba5484 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gcccuda.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gcccuda.md @@ -6,6 +6,10 @@ hide: gcccuda ======= + +GNU Compiler Collection (GCC) based compiler toolchain, along with CUDA toolkit. + +(none) # Available modules @@ -17,9 +21,9 @@ To start using gcccuda, load one of these modules using a `module load` command module load gcccuda/2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gcccuda/2020b|x|x|x|x|x|x|x|x| -|gcccuda/2019b|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gcccuda/2020b|x|x|x|x|x|x| +|gcccuda/2019b|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gcloud.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gcloud.md index 6562ccd8e348..9812fb4c2eea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gcloud.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gcloud.md @@ -6,6 +6,10 @@ hide: gcloud ====== + +Libraries and tools for interacting with Google Cloud products and services. + +https://cloud.google.com/sdk # Available modules @@ -17,8 +21,8 @@ To start using gcloud, load one of these modules using a `module load` command l module load gcloud/382.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gcloud/382.0.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gcloud/382.0.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gcsfs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gcsfs.md new file mode 100644 index 000000000000..9a2ed7da0c94 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gcsfs.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +gcsfs +===== + + +Pythonic file-system interface for Google Cloud Storage. + +https://github.com/fsspec/gcsfs +# Available modules + + +The overview below shows which gcsfs installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using gcsfs, load one of these modules using a `module load` command like: + +```shell +module load gcsfs/2023.12.2.post1-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gcsfs/2023.12.2.post1-foss-2023a|x|x|x|x|x|x| + + +### gcsfs/2023.12.2.post1-foss-2023a + +This is a list of extensions included in the module: + +cachetools-5.3.2, decorator-5.1.1, fsspec-2023.12.2, g-0.0.3, gcsfs-2023.12.2.post1, google-api-core-2.15.0, google-auth-2.26.2, google-auth-oauthlib-1.2.0, google-cloud-core-2.4.1, google-cloud-storage-2.14.0, google-crc32c-1.5.0, google-resumable-media-2.7.0, googleapis-common-protos-1.62.0, oauthlib-3.2.2, pyasn1-modules-0.3.0, requests-2.31.0, requests-oauthlib-1.3.1, rsa-4.9 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gdbm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gdbm.md index e0d2db4e8221..3dc9d0472894 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gdbm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gdbm.md @@ -6,6 +6,10 @@ hide: gdbm ==== + +GNU dbm (or GDBM, for short) is a library of database functions that use extensible hashing and work similar to the standard UNIX dbm. These routines are provided to a programmer needing to create and manipulate a hashed database. + +https://www.gnu.org.ua/software/gdbm/ # Available modules @@ -17,8 +21,8 @@ To start using gdbm, load one of these modules using a `module load` command lik module load gdbm/1.18.1-foss-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gdbm/1.18.1-foss-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gdbm/1.18.1-foss-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gdc-client.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gdc-client.md index 599f007c0c53..682bf63b012b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gdc-client.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gdc-client.md @@ -6,6 +6,10 @@ hide: gdc-client ========== + +The gdc-client provides several convenience functions over the GDC API which provides general download/upload via HTTPS. + +https://gdc.nci.nih.gov/access-data/gdc-data-transfer-tool # Available modules @@ -17,8 +21,15 @@ To start using gdc-client, load one of these modules using a `module load` comma module load gdc-client/1.6.0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gdc-client/1.6.0-GCCcore-10.2.0|x|x|x|x|-|x| + + +### gdc-client/1.6.0-GCCcore-10.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gdc-client/1.6.0-GCCcore-10.2.0|x|x|x|x|-|x|x|x| +cryptography-2.8, gdc-client-1.6.0, idna-2.8, intervaltree-3.0.2, jsonschema-2.6.0, lxml-4.4.2, ndg-httpsclient-0.5.0, progressbar2-3.43.1, pyasn1-0.4.3, pyOpenSSL-18.0.0, python-utils-2.5.6, PyYAML-3.13, requests-2.22.0, termcolor-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gengetopt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gengetopt.md index 3325af58b2f8..a3b88bfe808d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gengetopt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gengetopt.md @@ -6,6 +6,10 @@ hide: gengetopt ========= + +Gengetopt is a tool to write command line option parsing code for C programs. + +https://www.gnu.org/software/gengetopt/gengetopt.html # Available modules @@ -17,9 +21,9 @@ To start using gengetopt, load one of these modules using a `module load` comman module load gengetopt/2.23-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gengetopt/2.23-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|gengetopt/2.23-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gengetopt/2.23-GCCcore-10.2.0|-|x|x|x|x|x| +|gengetopt/2.23-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/genomepy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/genomepy.md index 1dbb33a2dfd0..3c8f26ab1519 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/genomepy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/genomepy.md @@ -6,6 +6,10 @@ hide: genomepy ======== + +genomepy is designed to provide a simple and straightforward way to download and use genomic data + +https://github.com/vanheeringen-lab/genomepy # Available modules @@ -17,8 +21,15 @@ To start using genomepy, load one of these modules using a `module load` command module load genomepy/0.15.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|genomepy/0.15.0-foss-2022a|x|x|x|x|x|x| + + +### genomepy/0.15.0-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|genomepy/0.15.0-foss-2022a|x|x|x|x|x|x|x|x| +diskcache-5.4.0, genomepy-0.15.0, loguru-0.6.0, mysql-connector-python-8.0.32, norns-0.1.6, pyfaidx-0.7.2.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/genozip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/genozip.md index fdc62bd1f8dd..9e2764945bb2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/genozip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/genozip.md @@ -6,6 +6,10 @@ hide: genozip ======= + +Genozip is a compressor for genomic files - it compresses FASTQ, SAM/BAM/CRAM, VCF, FASTA and others. + +https://genozip.com # Available modules @@ -17,8 +21,8 @@ To start using genozip, load one of these modules using a `module load` command module load genozip/13.0.5-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|genozip/13.0.5-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|genozip/13.0.5-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gensim.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gensim.md index 39c1a117349c..f995b9f00d8b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gensim.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gensim.md @@ -6,6 +6,10 @@ hide: gensim ====== + +Gensim is a Python library for topic modelling, document indexing and similarity retrieval with large corpora. + +https://radimrehurek.com/gensim # Available modules @@ -17,10 +21,29 @@ To start using gensim, load one of these modules using a `module load` command l module load gensim/4.2.0-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gensim/4.2.0-foss-2021a|x|x|x|-|x|x| +|gensim/3.8.3-intel-2020b|-|x|x|-|x|x| +|gensim/3.8.3-foss-2020b|-|x|x|x|x|x| + + +### gensim/4.2.0-foss-2021a + +This is a list of extensions included in the module: + +gensim-4.2.0, smart_open-6.0.0 + +### gensim/3.8.3-intel-2020b + +This is a list of extensions included in the module: + +gensim-3.8.3, smart_open-4.1.2 + +### gensim/3.8.3-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gensim/4.2.0-foss-2021a|x|x|x|-|x|x|x|x| -|gensim/3.8.3-intel-2020b|-|x|x|-|x|x|x|x| -|gensim/3.8.3-foss-2020b|-|x|x|x|x|x|x|x| +gensim-3.8.3, smart_open-4.1.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/geopandas.md b/mkdocs/docs/HPC/only/gent/available_software/detail/geopandas.md index 8a3f0f6080a7..103a9e9b4f1e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/geopandas.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/geopandas.md @@ -6,6 +6,10 @@ hide: geopandas ========= + +GeoPandas is a project to add support for geographic data to pandas objects.It currently implements GeoSeries and GeoDataFrame types which are subclasses of pandas.Seriesand pandas.DataFrame respectively. GeoPandas objects can act on shapely geometry objects andperform geometric operations. + +https://github.com/geopandas/geopandas # Available modules @@ -17,10 +21,29 @@ To start using geopandas, load one of these modules using a `module load` comman module load geopandas/0.12.2-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|geopandas/0.12.2-foss-2022b|x|x|x|x|x|x| +|geopandas/0.8.1-intel-2019b-Python-3.7.4|-|-|x|-|x|x| +|geopandas/0.8.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### geopandas/0.12.2-foss-2022b + +This is a list of extensions included in the module: + +geopandas-0.12.2, mapclassify-2.4.3 + +### geopandas/0.8.1-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +Deprecated-1.2.10, descartes-1.1.0, geopandas-0.8.1, mapclassify-2.2.0, wrapt-1.12.1 + +### geopandas/0.8.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|geopandas/0.12.2-foss-2022b|x|x|x|x|x|x|x|x| -|geopandas/0.8.1-intel-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| -|geopandas/0.8.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +Deprecated-1.2.10, descartes-1.1.0, geopandas-0.8.1, mapclassify-2.3.0, wrapt-1.12.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gettext.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gettext.md index 92cdc5f8c647..da6a6973fd32 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gettext.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gettext.md @@ -6,6 +6,10 @@ hide: gettext ======= + +GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we maybuild many other steps. This package offers to programmers, translators, and even users, a well integrated set of toolsand documentation + +http://www.gnu.org/software/gettext/ # Available modules @@ -14,23 +18,25 @@ The overview below shows which gettext installations are available per HPC-UGent To start using gettext, load one of these modules using a `module load` command like: ```shell -module load gettext/0.21.1-GCCcore-12.3.0 +module load gettext/0.22-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gettext/0.21.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|gettext/0.21.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|gettext/0.21.1|x|x|x|x|x|x|x|x| -|gettext/0.21-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|gettext/0.21-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|gettext/0.21-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|gettext/0.21-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|gettext/0.21|x|x|x|x|x|x|x|x| -|gettext/0.20.1-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|gettext/0.20.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|gettext/0.20.1|x|x|x|x|x|x|x|x| -|gettext/0.19.8.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|gettext/0.19.8.1|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gettext/0.22-GCCcore-13.2.0|x|x|x|x|x|x| +|gettext/0.22|x|x|x|x|x|x| +|gettext/0.21.1-GCCcore-12.3.0|x|x|x|x|x|x| +|gettext/0.21.1-GCCcore-12.2.0|x|x|x|x|x|x| +|gettext/0.21.1|x|x|x|x|x|x| +|gettext/0.21-GCCcore-11.3.0|x|x|x|x|x|x| +|gettext/0.21-GCCcore-11.2.0|x|x|x|x|x|x| +|gettext/0.21-GCCcore-10.3.0|x|x|x|x|x|x| +|gettext/0.21-GCCcore-10.2.0|x|x|x|x|x|x| +|gettext/0.21|x|x|x|x|x|x| +|gettext/0.20.1-GCCcore-9.3.0|x|x|x|x|x|x| +|gettext/0.20.1-GCCcore-8.3.0|x|x|x|-|x|x| +|gettext/0.20.1|x|x|x|x|x|x| +|gettext/0.19.8.1-GCCcore-8.2.0|-|x|-|-|-|-| +|gettext/0.19.8.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gexiv2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gexiv2.md index 1cd118f6094c..311192cfa0a7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gexiv2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gexiv2.md @@ -6,6 +6,10 @@ hide: gexiv2 ====== + +gexiv2 is a GObject wrapper around the Exiv2 photo metadata library. + +https://wiki.gnome.org/Projects/gexiv2 # Available modules @@ -17,8 +21,8 @@ To start using gexiv2, load one of these modules using a `module load` command l module load gexiv2/0.12.2-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gexiv2/0.12.2-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gexiv2/0.12.2-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gfbf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gfbf.md index e24efca40e86..ba45465e933d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gfbf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gfbf.md @@ -6,6 +6,10 @@ hide: gfbf ==== + +GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW. + +(none) # Available modules @@ -14,12 +18,13 @@ The overview below shows which gfbf installations are available per HPC-UGent Ti To start using gfbf, load one of these modules using a `module load` command like: ```shell -module load gfbf/2023a +module load gfbf/2023b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gfbf/2023a|x|x|x|x|x|x|x|x| -|gfbf/2022b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gfbf/2023b|x|x|x|x|x|x| +|gfbf/2023a|x|x|x|x|x|x| +|gfbf/2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md index b38f22b79652..dbbdfbdaccd0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gffread.md @@ -6,6 +6,10 @@ hide: gffread ======= + +GFF/GTF parsing utility providing format conversions,region filtering, FASTA sequence extraction and more. + +https://ccb.jhu.edu/software/stringtie/gff.shtml#gffread # Available modules @@ -17,8 +21,8 @@ To start using gffread, load one of these modules using a `module load` command module load gffread/0.12.7-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gffread/0.12.7-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gffread/0.12.7-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gffutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gffutils.md index 13a898bd2e6a..2a5067d6dd8e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gffutils.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gffutils.md @@ -6,6 +6,10 @@ hide: gffutils ======== + +Gffutils is a Python package for working with and manipulating the GFF and GTF format files typically used for genomic annotations. + +https://github.com/daler/gffutils # Available modules @@ -17,8 +21,15 @@ To start using gffutils, load one of these modules using a `module load` command module load gffutils/0.12-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gffutils/0.12-foss-2022b|x|x|x|x|x|x| + + +### gffutils/0.12-foss-2022b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gffutils/0.12-foss-2022b|x|x|x|x|x|x|x|x| +argcomplete-3.1.1, argh-0.28.1, gffutils-0.12, simplejson-3.19.1, six-1.16.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gflags.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gflags.md index 24a7f5bf672d..331bbca093e2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gflags.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gflags.md @@ -6,6 +6,10 @@ hide: gflags ====== + +The gflags package contains a C++ library that implements commandline flagsprocessing. It includes built-in support for standard types such as stringand the ability to define flags in the source file in which they are used. + +https://github.com/gflags/gflags # Available modules @@ -14,11 +18,13 @@ The overview below shows which gflags installations are available per HPC-UGent To start using gflags, load one of these modules using a `module load` command like: ```shell -module load gflags/2.2.2-GCCcore-8.3.0 +module load gflags/2.2.2-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gflags/2.2.2-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gflags/2.2.2-GCCcore-12.2.0|x|x|x|x|x|x| +|gflags/2.2.2-GCCcore-11.3.0|x|x|x|x|x|x| +|gflags/2.2.2-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/giflib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/giflib.md index 12fdacbe8516..4c438ffd662b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/giflib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/giflib.md @@ -6,6 +6,10 @@ hide: giflib ====== + +giflib is a library for reading and writing gif images.It is API and ABI compatible with libungif which was in wide use whilethe LZW compression algorithm was patented. + +http://giflib.sourceforge.net/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which giflib installations are available per HPC-UGent To start using giflib, load one of these modules using a `module load` command like: ```shell -module load giflib/5.2.1-GCCcore-12.2.0 +module load giflib/5.2.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|giflib/5.2.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|giflib/5.2.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|giflib/5.2.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|giflib/5.2.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|giflib/5.2.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|giflib/5.2.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|giflib/5.2.1-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|giflib/5.2.1-GCCcore-12.3.0|x|x|x|x|x|x| +|giflib/5.2.1-GCCcore-12.2.0|x|x|x|x|x|x| +|giflib/5.2.1-GCCcore-11.3.0|x|x|x|x|x|x| +|giflib/5.2.1-GCCcore-11.2.0|x|x|x|x|x|x| +|giflib/5.2.1-GCCcore-10.3.0|x|x|x|x|x|x| +|giflib/5.2.1-GCCcore-10.2.0|x|x|x|x|x|x| +|giflib/5.2.1-GCCcore-9.3.0|-|x|x|-|x|x| +|giflib/5.2.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/git-lfs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/git-lfs.md index 202e9b7b8896..ca763f12201e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/git-lfs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/git-lfs.md @@ -6,6 +6,10 @@ hide: git-lfs ======= + +Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com + +https://git-lfs.github.com # Available modules @@ -17,8 +21,8 @@ To start using git-lfs, load one of these modules using a `module load` command module load git-lfs/3.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|git-lfs/3.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|git-lfs/3.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/git.md b/mkdocs/docs/HPC/only/gent/available_software/detail/git.md index 119f6890a4ea..9db7fc83724f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/git.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/git.md @@ -6,6 +6,10 @@ hide: git === + +Git is a free and open source distributed version control system designedto handle everything from small to very large projects with speed and efficiency. + +https://git-scm.com/ # Available modules @@ -14,19 +18,20 @@ The overview below shows which git installations are available per HPC-UGent Tie To start using git, load one of these modules using a `module load` command like: ```shell -module load git/2.41.0-GCCcore-12.3.0-nodocs +module load git/2.42.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|git/2.41.0-GCCcore-12.3.0-nodocs|x|x|x|x|x|x|x|x| -|git/2.38.1-GCCcore-12.2.0-nodocs|x|x|x|x|x|x|x|x| -|git/2.36.0-GCCcore-11.3.0-nodocs|x|x|x|x|x|x|x|x| -|git/2.33.1-GCCcore-11.2.0-nodocs|x|x|x|x|x|x|x|x| -|git/2.32.0-GCCcore-10.3.0-nodocs|x|x|x|x|x|x|x|x| -|git/2.28.0-GCCcore-10.2.0-nodocs|x|x|x|x|x|x|x|x| -|git/2.23.0-GCCcore-9.3.0-nodocs|x|x|x|x|x|x|x|x| -|git/2.23.0-GCCcore-8.3.0-nodocs|-|x|x|-|x|x|x|x| -|git/2.23.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|git/2.42.0-GCCcore-13.2.0|x|x|x|x|x|x| +|git/2.41.0-GCCcore-12.3.0-nodocs|x|x|x|x|x|x| +|git/2.38.1-GCCcore-12.2.0-nodocs|x|x|x|x|x|x| +|git/2.36.0-GCCcore-11.3.0-nodocs|x|x|x|x|x|x| +|git/2.33.1-GCCcore-11.2.0-nodocs|x|x|x|x|x|x| +|git/2.32.0-GCCcore-10.3.0-nodocs|x|x|x|x|x|x| +|git/2.28.0-GCCcore-10.2.0-nodocs|x|x|x|x|x|x| +|git/2.23.0-GCCcore-9.3.0-nodocs|x|x|x|x|x|x| +|git/2.23.0-GCCcore-8.3.0-nodocs|-|x|x|-|x|x| +|git/2.23.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/glew.md b/mkdocs/docs/HPC/only/gent/available_software/detail/glew.md index d88357e7d68a..619a5a49ea76 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/glew.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/glew.md @@ -6,6 +6,10 @@ hide: glew ==== + +The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-sourceC/C++ extension loading library. GLEW provides efficient run-time mechanismsfor determining which OpenGL extensions are supported on the target platform. + +http://glew.sourceforge.net/ # Available modules @@ -17,13 +21,14 @@ To start using glew, load one of these modules using a `module load` command lik module load glew/2.2.0-GCCcore-12.3.0-osmesa ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|glew/2.2.0-GCCcore-12.3.0-osmesa|x|x|x|x|x|x|x|x| -|glew/2.2.0-GCCcore-11.2.0-osmesa|x|x|x|x|x|x|x|x| -|glew/2.2.0-GCCcore-11.2.0-egl|x|x|x|x|x|x|x|x| -|glew/2.1.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|glew/2.1.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|glew/2.1.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|glew/2.2.0-GCCcore-12.3.0-osmesa|x|x|x|x|x|x| +|glew/2.2.0-GCCcore-12.2.0-egl|x|x|x|x|x|x| +|glew/2.2.0-GCCcore-11.2.0-osmesa|x|x|x|x|x|x| +|glew/2.2.0-GCCcore-11.2.0-egl|x|x|x|x|x|x| +|glew/2.1.0-GCCcore-10.2.0|x|x|x|x|x|x| +|glew/2.1.0-GCCcore-9.3.0|-|x|x|-|x|x| +|glew/2.1.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/glib-networking.md b/mkdocs/docs/HPC/only/gent/available_software/detail/glib-networking.md index b36076210318..289cf45e5cb6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/glib-networking.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/glib-networking.md @@ -6,6 +6,10 @@ hide: glib-networking =============== + +Network extensions for GLib + +https://gitlab.gnome.org/GNOME/glib-networking # Available modules @@ -17,9 +21,9 @@ To start using glib-networking, load one of these modules using a `module load` module load glib-networking/2.72.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|glib-networking/2.72.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|glib-networking/2.68.1-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|glib-networking/2.72.1-GCCcore-11.2.0|x|x|x|x|x|x| +|glib-networking/2.68.1-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/glibc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/glibc.md index 3075ade8ef82..eafbb816eed2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/glibc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/glibc.md @@ -6,6 +6,10 @@ hide: glibc ===== + +The GNU C Library project provides the core libraries for the GNU system and GNU/Linux systems, as well as many other systems that use Linux as the kernel. + +https://www.gnu.org/software/libc/ # Available modules @@ -17,8 +21,8 @@ To start using glibc, load one of these modules using a `module load` command li module load glibc/2.30-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|glibc/2.30-GCCcore-8.3.0|-|x|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|glibc/2.30-GCCcore-8.3.0|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/glog.md b/mkdocs/docs/HPC/only/gent/available_software/detail/glog.md index 815d9964a08c..dabe17a91999 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/glog.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/glog.md @@ -6,6 +6,10 @@ hide: glog ==== + +A C++ implementation of the Google logging module. + +https://github.com/google/glog # Available modules @@ -14,11 +18,13 @@ The overview below shows which glog installations are available per HPC-UGent Ti To start using glog, load one of these modules using a `module load` command like: ```shell -module load glog/0.4.0-GCCcore-8.3.0 +module load glog/0.6.0-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|glog/0.4.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|glog/0.6.0-GCCcore-12.2.0|x|x|x|x|x|x| +|glog/0.6.0-GCCcore-11.3.0|x|x|x|x|x|x| +|glog/0.4.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gmpy2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gmpy2.md index 29dd45327d01..795788f7f9ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gmpy2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gmpy2.md @@ -6,6 +6,10 @@ hide: gmpy2 ===== + +GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x + +https://github.com/aleaxit/gmpy # Available modules @@ -14,17 +18,19 @@ The overview below shows which gmpy2 installations are available per HPC-UGent T To start using gmpy2, load one of these modules using a `module load` command like: ```shell -module load gmpy2/2.1.2-intel-compilers-2022.1.0 +module load gmpy2/2.1.5-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gmpy2/2.1.2-intel-compilers-2022.1.0|x|x|x|x|x|x|x|x| -|gmpy2/2.1.2-intel-compilers-2021.4.0|x|x|x|x|x|x|x|x| -|gmpy2/2.1.2-GCC-11.3.0|x|x|x|x|x|x|x|x| -|gmpy2/2.1.2-GCC-11.2.0|x|x|x|-|x|x|x|x| -|gmpy2/2.1.0b5-GCC-10.2.0|-|x|x|x|x|x|x|x| -|gmpy2/2.1.0b5-GCC-9.3.0|-|x|x|-|x|x|x|x| -|gmpy2/2.1.0b4-GCC-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gmpy2/2.1.5-GCC-12.3.0|x|x|x|x|x|x| +|gmpy2/2.1.5-GCC-12.2.0|x|x|x|x|x|x| +|gmpy2/2.1.2-intel-compilers-2022.1.0|x|x|x|x|x|x| +|gmpy2/2.1.2-intel-compilers-2021.4.0|x|x|x|x|x|x| +|gmpy2/2.1.2-GCC-11.3.0|x|x|x|x|x|x| +|gmpy2/2.1.2-GCC-11.2.0|x|x|x|-|x|x| +|gmpy2/2.1.0b5-GCC-10.2.0|-|x|x|x|x|x| +|gmpy2/2.1.0b5-GCC-9.3.0|-|x|x|-|x|x| +|gmpy2/2.1.0b4-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gmsh.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gmsh.md index 962ac0678342..aaad70ead386 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gmsh.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gmsh.md @@ -6,6 +6,10 @@ hide: gmsh ==== + +Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor. + +https://gmsh.info # Available modules @@ -17,9 +21,9 @@ To start using gmsh, load one of these modules using a `module load` command lik module load gmsh/4.5.6-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gmsh/4.5.6-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| -|gmsh/4.5.6-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gmsh/4.5.6-intel-2019b-Python-2.7.16|-|x|x|-|x|x| +|gmsh/4.5.6-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gnuplot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gnuplot.md index bb43484bc596..1545d4b84879 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gnuplot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gnuplot.md @@ -6,6 +6,10 @@ hide: gnuplot ======= + +Portable interactive, function plotting utility + +http://gnuplot.sourceforge.net/ # Available modules @@ -14,16 +18,17 @@ The overview below shows which gnuplot installations are available per HPC-UGent To start using gnuplot, load one of these modules using a `module load` command like: ```shell -module load gnuplot/5.4.4-GCCcore-11.3.0 +module load gnuplot/5.4.8-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gnuplot/5.4.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|gnuplot/5.4.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|gnuplot/5.4.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|gnuplot/5.4.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|gnuplot/5.2.8-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|gnuplot/5.2.8-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gnuplot/5.4.8-GCCcore-12.3.0|x|x|x|x|x|x| +|gnuplot/5.4.4-GCCcore-11.3.0|x|x|x|x|x|x| +|gnuplot/5.4.2-GCCcore-11.2.0|x|x|x|x|x|x| +|gnuplot/5.4.2-GCCcore-10.3.0|x|x|x|x|x|x| +|gnuplot/5.4.1-GCCcore-10.2.0|x|x|x|x|x|x| +|gnuplot/5.2.8-GCCcore-9.3.0|-|x|x|-|x|x| +|gnuplot/5.2.8-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/goalign.md b/mkdocs/docs/HPC/only/gent/available_software/detail/goalign.md index ddc6e7e07a2a..d60f5a159c6d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/goalign.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/goalign.md @@ -6,6 +6,10 @@ hide: goalign ======= + +Goalign is a set of command line tools to manipulate multiple alignments. + +https://github.com/evolbioinfo/goalign # Available modules @@ -17,8 +21,8 @@ To start using goalign, load one of these modules using a `module load` command module load goalign/0.3.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|goalign/0.3.2|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|goalign/0.3.2|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gobff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gobff.md index b1a5d6944d4a..4d628e94fa87 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gobff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gobff.md @@ -6,6 +6,10 @@ hide: gobff ===== + +GCC and GFortran based compiler toolchain with OpenMPI, BLIS, libFLAME, ScaLAPACK and FFTW. + +(none) # Available modules @@ -17,8 +21,8 @@ To start using gobff, load one of these modules using a `module load` command li module load gobff/2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gobff/2020b|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gobff/2020b|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gomkl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gomkl.md index 7e414353d928..0d7e1a8ef4ea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gomkl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gomkl.md @@ -6,6 +6,10 @@ hide: gomkl ===== + +GNU Compiler Collection (GCC) based compiler toolchain with OpenMPI and MKL + +(none) # Available modules @@ -14,12 +18,13 @@ The overview below shows which gomkl installations are available per HPC-UGent T To start using gomkl, load one of these modules using a `module load` command like: ```shell -module load gomkl/2021a +module load gomkl/2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gomkl/2021a|x|x|x|x|x|x|x|x| -|gomkl/2020a|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gomkl/2023a|x|x|x|x|x|x| +|gomkl/2021a|x|x|x|x|x|x| +|gomkl/2020a|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gompi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gompi.md index 0c492b5d4e5c..309a4c7c770c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gompi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gompi.md @@ -6,6 +6,10 @@ hide: gompi ===== + +GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support. + +(none) # Available modules @@ -14,18 +18,19 @@ The overview below shows which gompi installations are available per HPC-UGent T To start using gompi, load one of these modules using a `module load` command like: ```shell -module load gompi/2023a +module load gompi/2023b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gompi/2023a|x|x|x|x|x|x|x|x| -|gompi/2022b|x|x|x|x|x|x|x|x| -|gompi/2022a|x|x|x|x|x|x|x|x| -|gompi/2021b|x|x|x|x|x|x|x|x| -|gompi/2021a|x|x|x|x|x|x|x|x| -|gompi/2020b|x|x|x|x|x|x|x|x| -|gompi/2020a|-|x|x|x|x|x|x|x| -|gompi/2019b|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gompi/2023b|x|x|x|x|x|x| +|gompi/2023a|x|x|x|x|x|x| +|gompi/2022b|x|x|x|x|x|x| +|gompi/2022a|x|x|x|x|x|x| +|gompi/2021b|x|x|x|x|x|x| +|gompi/2021a|x|x|x|x|x|x| +|gompi/2020b|x|x|x|x|x|x| +|gompi/2020a|-|x|x|x|x|x| +|gompi/2019b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gompic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gompic.md index ecb06f0c998d..5c13a91db6df 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gompic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gompic.md @@ -6,6 +6,10 @@ hide: gompic ====== + +GNU Compiler Collection (GCC) based compiler toolchain along with CUDA toolkit, including OpenMPI for MPI support with CUDA features enabled. + +(none) # Available modules @@ -17,8 +21,8 @@ To start using gompic, load one of these modules using a `module load` command l module load gompic/2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gompic/2020b|x|x|-|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gompic/2020b|x|x|-|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/googletest.md b/mkdocs/docs/HPC/only/gent/available_software/detail/googletest.md index 1bad33dceab4..40cddbe1a2f2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/googletest.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/googletest.md @@ -6,6 +6,10 @@ hide: googletest ========== + +Google's framework for writing C++ tests on a variety of platforms + +https://github.com/google/googletest # Available modules @@ -14,14 +18,15 @@ The overview below shows which googletest installations are available per HPC-UG To start using googletest, load one of these modules using a `module load` command like: ```shell -module load googletest/1.12.1-GCCcore-12.2.0 +module load googletest/1.13.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|googletest/1.12.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|googletest/1.11.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|googletest/1.11.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|googletest/1.10.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|googletest/1.13.0-GCCcore-12.3.0|x|x|x|x|x|x| +|googletest/1.12.1-GCCcore-12.2.0|x|x|x|x|x|x| +|googletest/1.11.0-GCCcore-11.3.0|x|x|x|x|x|x| +|googletest/1.11.0-GCCcore-11.2.0|x|x|x|-|x|x| +|googletest/1.10.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gotree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gotree.md index b1fbeeae43f7..1ff2b8f7d8a8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gotree.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gotree.md @@ -6,6 +6,10 @@ hide: gotree ====== + +GoTree is a set of command line tools to manipulate phylogenetic trees. + +https://github.com/evolbioinfo/gotree # Available modules @@ -17,8 +21,8 @@ To start using gotree, load one of these modules using a `module load` command l module load gotree/0.4.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gotree/0.4.0|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gotree/0.4.0|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gperf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gperf.md index 6e6feea91df9..325c30291448 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gperf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gperf.md @@ -6,6 +6,10 @@ hide: gperf ===== + +GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only. + +http://www.gnu.org/software/gperf/ # Available modules @@ -17,16 +21,16 @@ To start using gperf, load one of these modules using a `module load` command li module load gperf/3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gperf/3.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|gperf/3.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|gperf/3.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|gperf/3.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|gperf/3.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|gperf/3.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|gperf/3.1-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|gperf/3.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|gperf/3.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gperf/3.1-GCCcore-12.3.0|x|x|x|x|x|x| +|gperf/3.1-GCCcore-12.2.0|x|x|x|x|x|x| +|gperf/3.1-GCCcore-11.3.0|x|x|x|x|x|x| +|gperf/3.1-GCCcore-11.2.0|x|x|x|x|x|x| +|gperf/3.1-GCCcore-10.3.0|x|x|x|x|x|x| +|gperf/3.1-GCCcore-10.2.0|x|x|x|x|x|x| +|gperf/3.1-GCCcore-9.3.0|x|x|x|x|x|x| +|gperf/3.1-GCCcore-8.3.0|x|x|x|-|x|x| +|gperf/3.1-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gperftools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gperftools.md index 9b786a5fe9e8..4e7016b55128 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gperftools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gperftools.md @@ -6,6 +6,10 @@ hide: gperftools ========== + +gperftools are for use by developers so that they can create more robust applications. Especially of use to those developing multi-threaded applications in C++ with templates. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler. + +https://github.com/gperftools/gperftools # Available modules @@ -14,13 +18,14 @@ The overview below shows which gperftools installations are available per HPC-UG To start using gperftools, load one of these modules using a `module load` command like: ```shell -module load gperftools/2.10-GCCcore-11.3.0 +module load gperftools/2.14-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gperftools/2.10-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|gperftools/2.9.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|gperftools/2.7.90-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gperftools/2.14-GCCcore-12.2.0|x|x|x|x|x|x| +|gperftools/2.10-GCCcore-11.3.0|x|x|x|x|x|x| +|gperftools/2.9.1-GCCcore-10.3.0|x|x|x|-|x|x| +|gperftools/2.7.90-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gpustat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gpustat.md index d6eb98d4c49d..3c83abfec664 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gpustat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gpustat.md @@ -6,6 +6,10 @@ hide: gpustat ======= + +dstat-like utilization monitor for NVIDIA GPUs + +https://github.com/wookayin/gpustat # Available modules @@ -17,8 +21,15 @@ To start using gpustat, load one of these modules using a `module load` command module load gpustat/0.6.0-gcccuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gpustat/0.6.0-gcccuda-2020b|-|-|-|-|x|-| + + +### gpustat/0.6.0-gcccuda-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gpustat/0.6.0-gcccuda-2020b|-|-|-|-|x|-|-|-| +blessings-1.7, gpustat-0.6.0, nvidia-ml-py3-7.352.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/graphite2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/graphite2.md index 91d1164bde31..e5774ec1ba4f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/graphite2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/graphite2.md @@ -6,6 +6,10 @@ hide: graphite2 ========= + +Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world. + +https://scripts.sil.org/cms/scripts/page.php?site_id=projects&item_id=graphite_home # Available modules @@ -14,13 +18,14 @@ The overview below shows which graphite2 installations are available per HPC-UGe To start using graphite2, load one of these modules using a `module load` command like: ```shell -module load graphite2/1.3.14-GCCcore-12.2.0 +module load graphite2/1.3.14-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|graphite2/1.3.14-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|graphite2/1.3.14-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|graphite2/1.3.14-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|graphite2/1.3.14-GCCcore-12.3.0|x|x|x|x|x|x| +|graphite2/1.3.14-GCCcore-12.2.0|x|x|x|x|x|x| +|graphite2/1.3.14-GCCcore-11.3.0|x|x|x|x|x|x| +|graphite2/1.3.14-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/graphviz-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/graphviz-python.md index cd11e3f39e27..cc8fc95a1c24 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/graphviz-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/graphviz-python.md @@ -6,6 +6,10 @@ hide: graphviz-python =============== + +Simple Python interface for Graphviz + +https://pypi.python.org/pypi/graphviz # Available modules @@ -14,11 +18,12 @@ The overview below shows which graphviz-python installations are available per H To start using graphviz-python, load one of these modules using a `module load` command like: ```shell -module load graphviz-python/0.20.1-GCCcore-11.3.0 +module load graphviz-python/0.20.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|graphviz-python/0.20.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|graphviz-python/0.20.1-GCCcore-12.3.0|x|x|x|x|x|x| +|graphviz-python/0.20.1-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/grid.md b/mkdocs/docs/HPC/only/gent/available_software/detail/grid.md index f352ca1359be..0e13dda4fcb4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/grid.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/grid.md @@ -6,6 +6,10 @@ hide: grid ==== + +Grid is a free and open-source Python library for numerical integration, interpolation and differentiation of interest for the quantum chemistry community. + +https://grid.qcdevs.org/ # Available modules @@ -17,8 +21,8 @@ To start using grid, load one of these modules using a `module load` command lik module load grid/20220610-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|grid/20220610-intel-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|grid/20220610-intel-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/groff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/groff.md index 411aad80ccf6..e4daecd2f765 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/groff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/groff.md @@ -6,6 +6,10 @@ hide: groff ===== + +Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output. + +https://www.gnu.org/software/groff # Available modules @@ -17,15 +21,15 @@ To start using groff, load one of these modules using a `module load` command li module load groff/1.22.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|groff/1.22.4-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|groff/1.22.4-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|groff/1.22.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|groff/1.22.4-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|groff/1.22.4-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|groff/1.22.4-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|groff/1.22.4-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|groff/1.22.4-GCCcore-8.3.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|groff/1.22.4-GCCcore-12.3.0|x|x|x|x|x|x| +|groff/1.22.4-GCCcore-12.2.0|x|x|x|x|x|x| +|groff/1.22.4-GCCcore-11.3.0|x|x|x|x|x|x| +|groff/1.22.4-GCCcore-11.2.0|x|x|x|x|x|x| +|groff/1.22.4-GCCcore-10.3.0|x|x|x|x|x|x| +|groff/1.22.4-GCCcore-10.2.0|x|x|x|x|x|x| +|groff/1.22.4-GCCcore-9.3.0|x|x|x|x|x|x| +|groff/1.22.4-GCCcore-8.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/gzip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/gzip.md index 7646f7fe313c..4feeb77dee63 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/gzip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/gzip.md @@ -6,6 +6,10 @@ hide: gzip ==== + +gzip (GNU zip) is a popular data compression program as a replacement for compress + +https://www.gnu.org/software/gzip/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which gzip installations are available per HPC-UGent Ti To start using gzip, load one of these modules using a `module load` command like: ```shell -module load gzip/1.12-GCCcore-12.3.0 +module load gzip/1.13-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|gzip/1.12-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|gzip/1.12-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|gzip/1.12-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|gzip/1.10-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|gzip/1.10-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|gzip/1.10-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|gzip/1.10-GCCcore-9.3.0|-|x|x|x|x|x|x|x| -|gzip/1.10-GCCcore-8.3.0|x|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|gzip/1.13-GCCcore-13.2.0|x|x|x|x|x|x| +|gzip/1.12-GCCcore-12.3.0|x|x|x|x|x|x| +|gzip/1.12-GCCcore-12.2.0|x|x|x|x|x|x| +|gzip/1.12-GCCcore-11.3.0|x|x|x|x|x|x| +|gzip/1.10-GCCcore-11.2.0|x|x|x|x|x|x| +|gzip/1.10-GCCcore-10.3.0|x|x|x|x|x|x| +|gzip/1.10-GCCcore-10.2.0|x|x|x|x|x|x| +|gzip/1.10-GCCcore-9.3.0|-|x|x|x|x|x| +|gzip/1.10-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/h5netcdf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/h5netcdf.md new file mode 100644 index 000000000000..c2c4d3280439 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/h5netcdf.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +h5netcdf +======== + + +A Python interface for the netCDF4 file-format that reads and writes local orremote HDF5 files directly via h5py or h5pyd, without relying on the UnidatanetCDF library. + +https://h5netcdf.org/ +# Available modules + + +The overview below shows which h5netcdf installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using h5netcdf, load one of these modules using a `module load` command like: + +```shell +module load h5netcdf/1.2.0-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|h5netcdf/1.2.0-foss-2023a|x|x|x|x|x|x| + + +### h5netcdf/1.2.0-foss-2023a + +This is a list of extensions included in the module: + +h5netcdf-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/h5py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/h5py.md index 1dd52f41b780..dd6bdeab1813 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/h5py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/h5py.md @@ -6,6 +6,10 @@ hide: h5py ==== + +HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data. + +https://www.h5py.org/ # Available modules @@ -14,25 +18,26 @@ The overview below shows which h5py installations are available per HPC-UGent Ti To start using h5py, load one of these modules using a `module load` command like: ```shell -module load h5py/3.8.0-foss-2022b +module load h5py/3.9.0-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|h5py/3.8.0-foss-2022b|x|x|x|x|x|x|x|x| -|h5py/3.7.0-intel-2022a|x|x|x|x|x|x|x|x| -|h5py/3.7.0-foss-2022a|x|x|x|x|x|x|x|x| -|h5py/3.6.0-intel-2021b|x|x|x|-|x|x|x|x| -|h5py/3.6.0-foss-2021b|x|x|x|x|x|x|x|x| -|h5py/3.2.1-gomkl-2021a|x|x|x|-|x|x|x|x| -|h5py/3.2.1-foss-2021a|x|x|x|x|x|x|x|x| -|h5py/3.1.0-intel-2020b|-|x|x|-|x|x|x|x| -|h5py/3.1.0-fosscuda-2020b|x|-|-|-|x|-|-|-| -|h5py/3.1.0-foss-2020b|x|x|x|x|x|x|x|x| -|h5py/2.10.0-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|h5py/2.10.0-intel-2020a-Python-2.7.18|-|x|x|-|x|x|x|x| -|h5py/2.10.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|h5py/2.10.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|h5py/2.10.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|h5py/3.9.0-foss-2023a|x|x|x|x|x|x| +|h5py/3.8.0-foss-2022b|x|x|x|x|x|x| +|h5py/3.7.0-intel-2022a|x|x|x|x|x|x| +|h5py/3.7.0-foss-2022a|x|x|x|x|x|x| +|h5py/3.6.0-intel-2021b|x|x|x|-|x|x| +|h5py/3.6.0-foss-2021b|x|x|x|x|x|x| +|h5py/3.2.1-gomkl-2021a|x|x|x|-|x|x| +|h5py/3.2.1-foss-2021a|x|x|x|x|x|x| +|h5py/3.1.0-intel-2020b|-|x|x|-|x|x| +|h5py/3.1.0-fosscuda-2020b|x|-|-|-|x|-| +|h5py/3.1.0-foss-2020b|x|x|x|x|x|x| +|h5py/2.10.0-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|h5py/2.10.0-intel-2020a-Python-2.7.18|-|x|x|-|x|x| +|h5py/2.10.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|h5py/2.10.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|h5py/2.10.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/harmony.md b/mkdocs/docs/HPC/only/gent/available_software/detail/harmony.md index f2feb1e7e843..7a600b7d752f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/harmony.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/harmony.md @@ -6,6 +6,10 @@ hide: harmony ======= + +Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. + +https://portals.broadinstitute.org/harmony # Available modules @@ -17,9 +21,9 @@ To start using harmony, load one of these modules using a `module load` command module load harmony/1.0.0-20200224-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|harmony/1.0.0-20200224-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| -|harmony/0.1.0-20210528-foss-2020b-R-4.0.3|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|harmony/1.0.0-20200224-foss-2020a-R-4.0.0|-|x|x|-|x|x| +|harmony/0.1.0-20210528-foss-2020b-R-4.0.3|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hatchling.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hatchling.md index bbc4a7bcfd7b..a48e0a907441 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hatchling.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hatchling.md @@ -6,6 +6,10 @@ hide: hatchling ========= + +Extensible, standards compliant build backend used by Hatch,a modern, extensible Python project manager. + +https://hatch.pypa.io # Available modules @@ -14,11 +18,25 @@ The overview below shows which hatchling installations are available per HPC-UGe To start using hatchling, load one of these modules using a `module load` command like: ```shell -module load hatchling/1.18.0-GCCcore-12.3.0 +module load hatchling/1.18.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|hatchling/1.18.0-GCCcore-13.2.0|x|x|x|x|x|x| +|hatchling/1.18.0-GCCcore-12.3.0|x|x|x|x|x|x| + + +### hatchling/1.18.0-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +editables-0.5, hatch_fancy_pypi_readme-23.1.0, hatch_vcs-0.3.0, hatchling-1.18.0, packaging-23.2, pathspec-0.11.2, pluggy-1.3.0, setuptools-scm-8.0.4, tomli-2.0.1, trove_classifiers-2023.10.18, typing_extensions-4.8.0 + +### hatchling/1.18.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|hatchling/1.18.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| +editables-0.3, hatch_fancy_pypi_readme-23.1.0, hatch_vcs-0.3.0, hatchling-1.18.0, packaging-23.1, pathspec-0.11.1, pluggy-1.2.0, setuptools_scm-7.1.0, tomli-2.0.1, trove_classifiers-2023.5.24, typing_extensions-4.6.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/help2man.md b/mkdocs/docs/HPC/only/gent/available_software/detail/help2man.md index 719da8659845..eadc842772d0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/help2man.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/help2man.md @@ -6,6 +6,10 @@ hide: help2man ======== + +help2man produces simple manual pages from the '--help' and '--version' output of other commands. + +https://www.gnu.org/software/help2man/ # Available modules @@ -14,20 +18,21 @@ The overview below shows which help2man installations are available per HPC-UGen To start using help2man, load one of these modules using a `module load` command like: ```shell -module load help2man/1.49.3-GCCcore-12.3.0 +module load help2man/1.49.3-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|help2man/1.49.3-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|help2man/1.49.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|help2man/1.49.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|help2man/1.48.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|help2man/1.48.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|help2man/1.47.16-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|help2man/1.47.12-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|help2man/1.47.8-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|help2man/1.47.7-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|help2man/1.47.4|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|help2man/1.49.3-GCCcore-13.2.0|x|x|x|x|x|x| +|help2man/1.49.3-GCCcore-12.3.0|x|x|x|x|x|x| +|help2man/1.49.2-GCCcore-12.2.0|x|x|x|x|x|x| +|help2man/1.49.2-GCCcore-11.3.0|x|x|x|x|x|x| +|help2man/1.48.3-GCCcore-11.2.0|x|x|x|x|x|x| +|help2man/1.48.3-GCCcore-10.3.0|x|x|x|x|x|x| +|help2man/1.47.16-GCCcore-10.2.0|x|x|x|x|x|x| +|help2man/1.47.12-GCCcore-9.3.0|x|x|x|x|x|x| +|help2man/1.47.8-GCCcore-8.3.0|x|x|x|x|x|x| +|help2man/1.47.7-GCCcore-8.2.0|-|x|-|-|-|-| +|help2man/1.47.4|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hierfstat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hierfstat.md index f51b5e8a304f..db37a7ae677c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hierfstat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hierfstat.md @@ -6,6 +6,10 @@ hide: hierfstat ========= + +Estimates hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels inthe hierarchy. + +https://cran.r-project.org/package=hierfstat # Available modules @@ -17,8 +21,15 @@ To start using hierfstat, load one of these modules using a `module load` comman module load hierfstat/0.5-7-foss-2020a-R-4.0.0-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|hierfstat/0.5-7-foss-2020a-R-4.0.0-Python-3.8.2|-|x|x|-|x|x| + + +### hierfstat/0.5-7-foss-2020a-R-4.0.0-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|hierfstat/0.5-7-foss-2020a-R-4.0.0-Python-3.8.2|-|x|x|-|x|x|x|x| +adegenet-2.1.3, gaston-1.5.6, hierfstat-0.5-7, RcppParallel-5.0.2, spdep-1.1-5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hifiasm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hifiasm.md new file mode 100644 index 000000000000..8a8e8f87eba2 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hifiasm.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +hifiasm +======= + + +Hifiasm: a haplotype-resolved assembler for accurate Hifi reads. + +https://github.com/chhylp123/hifiasm +# Available modules + + +The overview below shows which hifiasm installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using hifiasm, load one of these modules using a `module load` command like: + +```shell +module load hifiasm/0.19.7-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|hifiasm/0.19.7-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hiredis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hiredis.md index c03b1a89c954..90d546007d22 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hiredis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hiredis.md @@ -6,6 +6,10 @@ hide: hiredis ======= + +Hiredis is a minimalistic C client library for the Redis database.It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command. + +https://github.com/redis/hiredis # Available modules @@ -17,8 +21,8 @@ To start using hiredis, load one of these modules using a `module load` command module load hiredis/1.0.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|hiredis/1.0.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|hiredis/1.0.2-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/histolab.md b/mkdocs/docs/HPC/only/gent/available_software/detail/histolab.md index 321c9c4268f4..54f4fc4cdf27 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/histolab.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/histolab.md @@ -6,6 +6,10 @@ hide: histolab ======== + +Library for Digital Pathology Image Processing + +https://github.com/histolab/histolab # Available modules @@ -17,9 +21,9 @@ To start using histolab, load one of these modules using a `module load` command module load histolab/0.4.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|histolab/0.4.1-foss-2021b|x|x|x|-|x|x|x|x| -|histolab/0.4.1-foss-2021a|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|histolab/0.4.1-foss-2021b|x|x|x|-|x|x| +|histolab/0.4.1-foss-2021a|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hmmlearn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hmmlearn.md new file mode 100644 index 000000000000..141a34041d76 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hmmlearn.md @@ -0,0 +1,29 @@ +--- +hide: + - toc +--- + +hmmlearn +======== + + +hmmlearn is a set of algorithms for unsupervised learning and inference of Hidden Markov Models + +https://github.com/hmmlearn/hmmlearn +# Available modules + + +The overview below shows which hmmlearn installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using hmmlearn, load one of these modules using a `module load` command like: + +```shell +module load hmmlearn/0.3.0-gfbf-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|hmmlearn/0.3.0-gfbf-2023a|x|x|x|x|x|x| +|hmmlearn/0.3.0-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/horton.md b/mkdocs/docs/HPC/only/gent/available_software/detail/horton.md index 87e714da94a7..c3f598fe1d7f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/horton.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/horton.md @@ -6,6 +6,10 @@ hide: horton ====== + +HORTON is a Helpful Open-source Research TOol for N-fermion systems, written primarily in the Python programming language. (HORTON is named after the helpful pachyderm, not the Canadian caffeine supply store.) The ultimate goal of HORTON is to provide a platform for testing new ideas on the quantum many-body problem at a reasonable computational cost. Although HORTON is primarily designed to be a quantum-chemistry program, it can perform computations involving model Hamiltonians, and could be extended for computations in nuclear physics. + +https://theochem.github.io/horton # Available modules @@ -17,8 +21,8 @@ To start using horton, load one of these modules using a `module load` command l module load horton/2.1.1-intel-2020a-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|horton/2.1.1-intel-2020a-Python-2.7.18|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|horton/2.1.1-intel-2020a-Python-2.7.18|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/how_are_we_stranded_here.md b/mkdocs/docs/HPC/only/gent/available_software/detail/how_are_we_stranded_here.md index 2696eba8e3ae..bd1991b98d47 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/how_are_we_stranded_here.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/how_are_we_stranded_here.md @@ -6,6 +6,10 @@ hide: how_are_we_stranded_here ======================== + +Python package for testing strandedness of RNA-Seq fastq files + +https://github.com/signalbash/how_are_we_stranded_here # Available modules @@ -17,8 +21,8 @@ To start using how_are_we_stranded_here, load one of these modules using a `modu module load how_are_we_stranded_here/1.0.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|how_are_we_stranded_here/1.0.1-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|how_are_we_stranded_here/1.0.1-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/humann.md b/mkdocs/docs/HPC/only/gent/available_software/detail/humann.md new file mode 100644 index 000000000000..aea32b3dd0a0 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/humann.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +humann +====== + + +HUMAnN v3 is a pipeline for efficiently and accurately determining the coverage and abundance of microbial pathways in a community from metagenomic data.Sequencing a metagenome typically produces millions of short DNA/RNA reads. This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question: What are the microbes in my community-of-interest doing (or capable of doing)? + +http://huttenhower.sph.harvard.edu/humann +# Available modules + + +The overview below shows which humann installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using humann, load one of these modules using a `module load` command like: + +```shell +module load humann/3.6-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|humann/3.6-foss-2022a|x|x|x|x|x|x| + + +### humann/3.6-foss-2022a + +This is a list of extensions included in the module: + +humann-3.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hunspell.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hunspell.md index 4ac6c7b73f80..e004a90c0866 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hunspell.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hunspell.md @@ -6,6 +6,10 @@ hide: hunspell ======== + +Hunspell is a spell checker and morphological analyzer library and program designed for languageswith rich morphology and complex word compounding or character encoding. + +http://hunspell.github.io/ # Available modules @@ -17,8 +21,8 @@ To start using hunspell, load one of these modules using a `module load` command module load hunspell/1.7.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|hunspell/1.7.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|hunspell/1.7.1-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hwloc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hwloc.md index ae7aa2058bb6..259dd7d03833 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hwloc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hwloc.md @@ -6,6 +6,10 @@ hide: hwloc ===== + +The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently. + +https://www.open-mpi.org/projects/hwloc/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which hwloc installations are available per HPC-UGent T To start using hwloc, load one of these modules using a `module load` command like: ```shell -module load hwloc/2.9.1-GCCcore-12.3.0 +module load hwloc/2.9.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|hwloc/2.9.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|hwloc/2.8.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|hwloc/2.7.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|hwloc/2.5.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|hwloc/2.4.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|hwloc/2.2.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|hwloc/2.2.0-GCCcore-9.3.0|-|x|x|x|x|x|x|x| -|hwloc/1.11.12-GCCcore-8.3.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|hwloc/2.9.2-GCCcore-13.2.0|x|x|x|x|x|x| +|hwloc/2.9.1-GCCcore-12.3.0|x|x|x|x|x|x| +|hwloc/2.8.0-GCCcore-12.2.0|x|x|x|x|x|x| +|hwloc/2.7.1-GCCcore-11.3.0|x|x|x|x|x|x| +|hwloc/2.5.0-GCCcore-11.2.0|x|x|x|x|x|x| +|hwloc/2.4.1-GCCcore-10.3.0|x|x|x|x|x|x| +|hwloc/2.2.0-GCCcore-10.2.0|x|x|x|x|x|x| +|hwloc/2.2.0-GCCcore-9.3.0|x|x|x|x|x|x| +|hwloc/1.11.12-GCCcore-8.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hyperopt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hyperopt.md index cac6e6705198..497966242949 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hyperopt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hyperopt.md @@ -6,6 +6,10 @@ hide: hyperopt ======== + +Distributed Asynchronous Hyperparameter Optimization in Python + +https://github.com/hyperopt/hyperopt # Available modules @@ -17,9 +21,22 @@ To start using hyperopt, load one of these modules using a `module load` command module load hyperopt/0.2.5-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|hyperopt/0.2.5-fosscuda-2020b|-|-|-|-|x|-| +|hyperopt/0.2.4-intel-2019b-Python-3.7.4-Java-1.8|-|x|x|-|x|-| + + +### hyperopt/0.2.5-fosscuda-2020b + +This is a list of extensions included in the module: + +cloudpickle-1.6.0, hyperopt-0.2.5, lightgbm-3.2.0, py4j-0.10.9.2, pymongo-3.11.3 + +### hyperopt/0.2.4-intel-2019b-Python-3.7.4-Java-1.8 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|hyperopt/0.2.5-fosscuda-2020b|-|-|-|-|x|-|-|-| -|hyperopt/0.2.4-intel-2019b-Python-3.7.4-Java-1.8|-|x|x|-|x|-|-|-| +cloudpickle-1.4.1, hyperopt-0.2.4, lightgbm-2.3.1, pymongo-3.10.1, tqdm-4.46.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/hypothesis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/hypothesis.md index f74c2670fa09..f20e96ed5e09 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/hypothesis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/hypothesis.md @@ -6,6 +6,10 @@ hide: hypothesis ========== + +Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work. + +https://github.com/HypothesisWorks/hypothesis # Available modules @@ -14,19 +18,27 @@ The overview below shows which hypothesis installations are available per HPC-UG To start using hypothesis, load one of these modules using a `module load` command like: ```shell -module load hypothesis/6.82.0-GCCcore-12.3.0 +module load hypothesis/6.90.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|hypothesis/6.82.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|hypothesis/6.68.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|hypothesis/6.46.7-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|hypothesis/6.14.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|hypothesis/6.13.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|hypothesis/5.41.5-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|hypothesis/5.41.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|hypothesis/4.57.1-GCCcore-11.2.0-Python-2.7.18|x|x|x|x|x|x|x|x| -|hypothesis/4.44.2-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|hypothesis/6.90.0-GCCcore-13.2.0|x|x|x|x|x|x| +|hypothesis/6.82.0-GCCcore-12.3.0|x|x|x|x|x|x| +|hypothesis/6.68.2-GCCcore-12.2.0|x|x|x|x|x|x| +|hypothesis/6.46.7-GCCcore-11.3.0|x|x|x|x|x|x| +|hypothesis/6.14.6-GCCcore-11.2.0|x|x|x|x|x|x| +|hypothesis/6.13.1-GCCcore-10.3.0|x|x|x|x|x|x| +|hypothesis/5.41.5-GCCcore-10.2.0|x|x|x|x|x|x| +|hypothesis/5.41.2-GCCcore-10.2.0|x|x|x|x|x|x| +|hypothesis/4.57.1-GCCcore-11.2.0-Python-2.7.18|x|x|x|x|x|x| +|hypothesis/4.44.2-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| + + +### hypothesis/4.44.2-GCCcore-8.3.0-Python-3.7.4 + +This is a list of extensions included in the module: + +attrs-19.3.0, hypothesis-4.44.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iccifort.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iccifort.md index a0079e58ac0d..1f38ba365b55 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iccifort.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iccifort.md @@ -6,6 +6,10 @@ hide: iccifort ======== + +Intel C, C++ & Fortran compilers + +https://software.intel.com/en-us/intel-compilers/ # Available modules @@ -17,10 +21,10 @@ To start using iccifort, load one of these modules using a `module load` command module load iccifort/2020.4.304 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|iccifort/2020.4.304|x|x|x|x|x|x|x|x| -|iccifort/2020.1.217|x|x|x|x|x|x|x|x| -|iccifort/2019.5.281|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|iccifort/2020.4.304|x|x|x|x|x|x| +|iccifort/2020.1.217|x|x|x|x|x|x| +|iccifort/2019.5.281|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iccifortcuda.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iccifortcuda.md index 1f7887899d51..093d41b7dc72 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iccifortcuda.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iccifortcuda.md @@ -6,6 +6,10 @@ hide: iccifortcuda ============ + +Intel C, C++ & Fortran compilers with CUDA toolkit + +(none) # Available modules @@ -17,10 +21,10 @@ To start using iccifortcuda, load one of these modules using a `module load` com module load iccifortcuda/2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|iccifortcuda/2020b|-|-|-|-|x|-|-|-| -|iccifortcuda/2020a|-|-|-|-|x|-|-|-| -|iccifortcuda/2019b|-|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|iccifortcuda/2020b|-|-|-|-|x|-| +|iccifortcuda/2020a|-|-|-|-|x|-| +|iccifortcuda/2019b|-|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ichorCNA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ichorCNA.md index 06a042103cf0..07fc3aacfbab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ichorCNA.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ichorCNA.md @@ -6,6 +6,10 @@ hide: ichorCNA ======== + +ichorCNA is a tool for estimating the fraction of tumor in cell-free DNA from ultra-low-pass wholegenome sequencing + +https://github.com/broadinstitute/ichorCNA/wiki # Available modules @@ -17,8 +21,8 @@ To start using ichorCNA, load one of these modules using a `module load` command module load ichorCNA/0.3.2-20191219-foss-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ichorCNA/0.3.2-20191219-foss-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ichorCNA/0.3.2-20191219-foss-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/idemux.md b/mkdocs/docs/HPC/only/gent/available_software/detail/idemux.md index 19151e5ecf22..4585de25cc82 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/idemux.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/idemux.md @@ -6,6 +6,10 @@ hide: idemux ====== + +idemux - inline barcode demultiplexingIdemux is a command line tool designed to demultiplex paired-end FASTQ files from QuantSeq-Pool. + +https://github.com/Lexogen-Tools/idemux # Available modules @@ -17,8 +21,15 @@ To start using idemux, load one of these modules using a `module load` command l module load idemux/0.1.6-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|idemux/0.1.6-GCCcore-10.2.0|-|x|x|-|x|x| + + +### idemux/0.1.6-GCCcore-10.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|idemux/0.1.6-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +idemux-0.1.6, pytest-runner-5.3.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/igraph.md b/mkdocs/docs/HPC/only/gent/available_software/detail/igraph.md index 81a47f7d752e..8c08255be3df 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/igraph.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/igraph.md @@ -6,6 +6,10 @@ hide: igraph ====== + +igraph is a collection of network analysis tools with the emphasis on efficiency, portability and ease of use. igraph is open source and free. igraph can be programmed in R, Python and C/C++. + +https://igraph.org # Available modules @@ -14,16 +18,17 @@ The overview below shows which igraph installations are available per HPC-UGent To start using igraph, load one of these modules using a `module load` command like: ```shell -module load igraph/0.10.3-foss-2022a +module load igraph/0.10.10-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|igraph/0.10.3-foss-2022a|x|x|x|x|x|x|x|x| -|igraph/0.9.5-foss-2021b|x|x|x|x|x|x|x|x| -|igraph/0.9.4-foss-2021a|x|x|x|x|x|x|x|x| -|igraph/0.9.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|igraph/0.9.1-foss-2020b|-|x|x|x|x|x|x|x| -|igraph/0.8.2-foss-2020a|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|igraph/0.10.10-foss-2023a|x|x|x|x|x|x| +|igraph/0.10.3-foss-2022a|x|x|x|x|x|x| +|igraph/0.9.5-foss-2021b|x|x|x|x|x|x| +|igraph/0.9.4-foss-2021a|x|x|x|x|x|x| +|igraph/0.9.1-fosscuda-2020b|-|-|-|-|x|-| +|igraph/0.9.1-foss-2020b|-|x|x|x|x|x| +|igraph/0.8.2-foss-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/igvShiny.md b/mkdocs/docs/HPC/only/gent/available_software/detail/igvShiny.md new file mode 100644 index 000000000000..728ed60a0b99 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/igvShiny.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +igvShiny +======== + + +An htmlwidget version of igv, for RStudio and Shiny apps + +https://github.com/gladkia/igvShiny +# Available modules + + +The overview below shows which igvShiny installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using igvShiny, load one of these modules using a `module load` command like: + +```shell +module load igvShiny/20240112-foss-2022a-R-4.2.1 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|igvShiny/20240112-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iibff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iibff.md index 374762e59a1d..be84a158f6c9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iibff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iibff.md @@ -6,6 +6,10 @@ hide: iibff ===== + +GCC and GFortran based compiler toolchain with OpenMPI, BLIS, libFLAME, ScaLAPACK and FFTW. + +(none) # Available modules @@ -17,8 +21,8 @@ To start using iibff, load one of these modules using a `module load` command li module load iibff/2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|iibff/2020b|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|iibff/2020b|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iimpi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iimpi.md index 099fc4c26411..a6feffa01112 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iimpi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iimpi.md @@ -6,6 +6,10 @@ hide: iimpi ===== + +Intel C/C++ and Fortran compilers, alongside Intel MPI. + +https://software.intel.com/parallel-studio-xe # Available modules @@ -17,14 +21,15 @@ To start using iimpi, load one of these modules using a `module load` command li module load iimpi/2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|iimpi/2023a|x|x|x|x|x|x|x|x| -|iimpi/2022a|x|x|x|x|x|x|x|x| -|iimpi/2021b|x|x|x|x|x|x|x|x| -|iimpi/2021a|-|x|x|-|x|x|x|x| -|iimpi/2020b|x|x|x|x|x|x|x|x| -|iimpi/2020a|x|x|x|x|x|x|x|x| -|iimpi/2019b|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|iimpi/2023a|x|x|x|x|x|x| +|iimpi/2022b|x|x|x|x|x|x| +|iimpi/2022a|x|x|x|x|x|x| +|iimpi/2021b|x|x|x|x|x|x| +|iimpi/2021a|-|x|x|-|x|x| +|iimpi/2020b|x|x|x|x|x|x| +|iimpi/2020a|x|x|x|x|x|x| +|iimpi/2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iimpic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iimpic.md index 18bd636973d1..caa552b52575 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iimpic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iimpic.md @@ -6,6 +6,10 @@ hide: iimpic ====== + +Intel C/C++ and Fortran compilers, alongside Intel MPI and CUDA. + +(none) # Available modules @@ -17,10 +21,10 @@ To start using iimpic, load one of these modules using a `module load` command l module load iimpic/2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|iimpic/2020b|-|-|-|-|x|-|-|-| -|iimpic/2020a|-|-|-|-|x|-|-|-| -|iimpic/2019b|-|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|iimpic/2020b|-|-|-|-|x|-| +|iimpic/2020a|-|-|-|-|x|-| +|iimpic/2019b|-|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imagecodecs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imagecodecs.md index 34318a767187..398a9143cfc8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imagecodecs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imagecodecs.md @@ -6,6 +6,10 @@ hide: imagecodecs =========== + +Imagecodecs is a Python library that provides block-oriented, in-memory buffer transformation,compression, and decompression functions for use in the tifffile, czifile, zarr, and otherscientific image input/output modules. + +https://github.com/cgohlke/imagecodecs # Available modules @@ -17,8 +21,15 @@ To start using imagecodecs, load one of these modules using a `module load` comm module load imagecodecs/2022.9.26-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|imagecodecs/2022.9.26-foss-2022a|x|x|x|x|x|x| + + +### imagecodecs/2022.9.26-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|imagecodecs/2022.9.26-foss-2022a|x|x|x|x|x|x|x|x| +bitshuffle-0.5.1, imagecodecs-2022.9.26 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imageio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imageio.md index 9723516e1135..04b27ae7f24f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imageio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imageio.md @@ -6,6 +6,10 @@ hide: imageio ======= + +Imageio is a Python library that provides an easy interface to read and write a wide range of image data, including animated images, video, volumetric data, and scientific formats. + +https://imageio.github.io # Available modules @@ -17,11 +21,11 @@ To start using imageio, load one of these modules using a `module load` command module load imageio/2.22.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|imageio/2.22.2-foss-2022a|x|x|x|x|x|x|x|x| -|imageio/2.13.5-foss-2021b|x|x|x|x|x|x|x|x| -|imageio/2.10.5-foss-2021a|x|x|x|-|x|x|x|x| -|imageio/2.9.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|imageio/2.22.2-foss-2022a|x|x|x|x|x|x| +|imageio/2.13.5-foss-2021b|x|x|x|x|x|x| +|imageio/2.10.5-foss-2021a|x|x|x|-|x|x| +|imageio/2.9.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imbalanced-learn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imbalanced-learn.md index 865bf4f31ea0..28808c728db7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imbalanced-learn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imbalanced-learn.md @@ -6,6 +6,10 @@ hide: imbalanced-learn ================ + +imbalanced-learn is a Python package offering a number of re-sampling techniques commonly used in datasets showing strong between-class imbalance. + +https://github.com/scikit-learn-contrib/imbalanced-learn # Available modules @@ -17,8 +21,15 @@ To start using imbalanced-learn, load one of these modules using a `module load` module load imbalanced-learn/0.10.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|imbalanced-learn/0.10.1-foss-2022a|x|x|x|x|x|x| + + +### imbalanced-learn/0.10.1-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|imbalanced-learn/0.10.1-foss-2022a|x|x|x|x|x|x|x|x| +imbalanced-learn-0.10.1, joblib-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imgaug.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imgaug.md index fee486f3dabc..bb7a4ab6f340 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imgaug.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imgaug.md @@ -6,6 +6,10 @@ hide: imgaug ====== + +This python library helps you with augmenting images for your machine learning projects. It converts a set of input images into a new, much larger set of slightly altered images. + +https://imgaug.readthedocs.io/en/latest/ # Available modules @@ -17,9 +21,9 @@ To start using imgaug, load one of these modules using a `module load` command l module load imgaug/0.4.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|imgaug/0.4.0-foss-2021b|x|x|x|-|x|x|x|x| -|imgaug/0.4.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|imgaug/0.4.0-foss-2021b|x|x|x|-|x|x| +|imgaug/0.4.0-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imkl-FFTW.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imkl-FFTW.md index 04efef37f18b..6f789decf72f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imkl-FFTW.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imkl-FFTW.md @@ -6,6 +6,10 @@ hide: imkl-FFTW ========= + +FFTW interfaces using Intel oneAPI Math Kernel Library + +https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/onemkl.html # Available modules @@ -17,10 +21,11 @@ To start using imkl-FFTW, load one of these modules using a `module load` comman module load imkl-FFTW/2023.1.0-iimpi-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|imkl-FFTW/2023.1.0-iimpi-2023a|x|x|x|x|x|x|x|x| -|imkl-FFTW/2022.1.0-iimpi-2022a|x|x|x|x|x|x|x|x| -|imkl-FFTW/2021.4.0-iimpi-2021b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|imkl-FFTW/2023.1.0-iimpi-2023a|x|x|x|x|x|x| +|imkl-FFTW/2022.2.1-iimpi-2022b|x|x|x|x|x|x| +|imkl-FFTW/2022.1.0-iimpi-2022a|x|x|x|x|x|x| +|imkl-FFTW/2021.4.0-iimpi-2021b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imkl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imkl.md index 8150f9e918fb..45f10492ddef 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/imkl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imkl.md @@ -6,6 +6,10 @@ hide: imkl ==== + +Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more. + +https://software.intel.com/mkl # Available modules @@ -14,36 +18,40 @@ The overview below shows which imkl installations are available per HPC-UGent Ti To start using imkl, load one of these modules using a `module load` command like: ```shell -module load imkl/2023.1.0 +module load imkl/2023.1.0-gompi-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|imkl/2023.1.0|x|x|x|x|x|x|x|x| -|imkl/2022.1.0|x|x|x|x|x|x|x|x| -|imkl/2021.4.0|x|x|x|x|x|x|x|x| -|imkl/2021.2.0-iimpi-2021a|-|x|x|-|x|x|x|x| -|imkl/2021.2.0-gompi-2021a|x|-|x|-|x|x|x|x| -|imkl/2020.4.304-iompi-2020b|x|-|x|x|x|x|x|x| -|imkl/2020.4.304-iimpic-2020b|-|-|-|-|x|-|-|-| -|imkl/2020.4.304-iimpi-2020b|-|-|x|x|x|x|x|x| -|imkl/2020.4.304-NVHPC-21.2|-|-|x|-|x|-|-|-| -|imkl/2020.1.217-iimpic-2020a|-|-|-|-|x|-|-|-| -|imkl/2020.1.217-iimpi-2020a|x|-|x|-|x|x|x|x| -|imkl/2020.1.217-gompi-2020a|-|-|x|-|x|x|x|x| -|imkl/2020.0.166-iompi-2020a|-|x|-|-|-|-|-|-| -|imkl/2020.0.166-iimpi-2020b|x|x|-|x|-|-|-|-| -|imkl/2020.0.166-iimpi-2020a|-|x|-|-|-|-|-|-| -|imkl/2020.0.166-gompi-2020a|-|x|-|-|-|-|-|-| -|imkl/2019.5.281-iimpic-2019b|-|-|-|-|x|-|-|-| -|imkl/2019.5.281-iimpi-2019b|-|x|x|-|x|x|x|x| -|imkl/2018.4.274-iompi-2020b|-|x|-|x|-|-|-|-| -|imkl/2018.4.274-iompi-2020a|-|x|-|-|-|-|-|-| -|imkl/2018.4.274-iimpi-2020b|-|x|-|x|-|-|-|-| -|imkl/2018.4.274-iimpi-2020a|x|x|-|x|-|-|-|-| -|imkl/2018.4.274-iimpi-2019b|-|x|-|-|-|-|-|-| -|imkl/2018.4.274-gompi-2021a|-|x|-|x|-|-|-|-| -|imkl/2018.4.274-gompi-2020a|-|x|-|x|-|-|-|-| -|imkl/2018.4.274-NVHPC-21.2|x|-|-|-|-|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|imkl/2023.1.0-gompi-2023a|-|-|x|-|x|x| +|imkl/2023.1.0|x|x|x|x|x|x| +|imkl/2022.2.1|x|x|x|x|x|x| +|imkl/2022.1.0|x|x|x|x|x|x| +|imkl/2021.4.0|x|x|x|x|x|x| +|imkl/2021.2.0-iompi-2021a|x|x|x|x|x|x| +|imkl/2021.2.0-iimpi-2021a|-|x|x|-|x|x| +|imkl/2021.2.0-gompi-2021a|x|-|x|-|x|x| +|imkl/2020.4.304-iompi-2020b|x|-|x|x|x|x| +|imkl/2020.4.304-iimpic-2020b|-|-|-|-|x|-| +|imkl/2020.4.304-iimpi-2020b|-|-|x|x|x|x| +|imkl/2020.4.304-NVHPC-21.2|-|-|x|-|x|-| +|imkl/2020.1.217-iimpic-2020a|-|-|-|-|x|-| +|imkl/2020.1.217-iimpi-2020a|x|-|x|-|x|x| +|imkl/2020.1.217-gompi-2020a|-|-|x|-|x|x| +|imkl/2020.0.166-iompi-2020a|-|x|-|-|-|-| +|imkl/2020.0.166-iimpi-2020b|x|x|-|x|-|-| +|imkl/2020.0.166-iimpi-2020a|-|x|-|-|-|-| +|imkl/2020.0.166-gompi-2023a|x|x|-|x|-|-| +|imkl/2020.0.166-gompi-2020a|-|x|-|-|-|-| +|imkl/2019.5.281-iimpic-2019b|-|-|-|-|x|-| +|imkl/2019.5.281-iimpi-2019b|-|x|x|-|x|x| +|imkl/2018.4.274-iompi-2020b|-|x|-|x|-|-| +|imkl/2018.4.274-iompi-2020a|-|x|-|-|-|-| +|imkl/2018.4.274-iimpi-2020b|-|x|-|x|-|-| +|imkl/2018.4.274-iimpi-2020a|x|x|-|x|-|-| +|imkl/2018.4.274-iimpi-2019b|-|x|-|-|-|-| +|imkl/2018.4.274-gompi-2021a|-|x|-|x|-|-| +|imkl/2018.4.274-gompi-2020a|-|x|-|x|-|-| +|imkl/2018.4.274-NVHPC-21.2|x|-|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/impi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/impi.md index 38ce8a899a3e..c0bf4ee90990 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/impi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/impi.md @@ -6,6 +6,10 @@ hide: impi ==== + +Intel MPI Library, compatible with MPICH ABI + +https://software.intel.com/en-us/intel-mpi-library/ # Available modules @@ -17,18 +21,19 @@ To start using impi, load one of these modules using a `module load` command lik module load impi/2021.9.0-intel-compilers-2023.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|impi/2021.9.0-intel-compilers-2023.1.0|x|x|x|x|x|x|x|x| -|impi/2021.6.0-intel-compilers-2022.1.0|x|x|x|x|x|x|x|x| -|impi/2021.4.0-intel-compilers-2021.4.0|x|x|x|x|x|x|x|x| -|impi/2021.2.0-intel-compilers-2021.2.0|-|x|x|-|x|x|x|x| -|impi/2019.9.304-iccifortcuda-2020b|-|-|-|-|x|-|-|-| -|impi/2019.9.304-iccifort-2020.4.304|x|x|x|x|x|x|x|x| -|impi/2019.9.304-iccifort-2020.1.217|x|x|x|x|x|x|x|x| -|impi/2019.9.304-iccifort-2019.5.281|-|x|x|-|x|x|x|x| -|impi/2019.7.217-iccifortcuda-2020a|-|-|-|-|x|-|-|-| -|impi/2019.7.217-iccifort-2020.1.217|-|x|x|-|x|x|x|x| -|impi/2019.7.217-iccifort-2019.5.281|-|x|x|-|x|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|impi/2021.9.0-intel-compilers-2023.1.0|x|x|x|x|x|x| +|impi/2021.7.1-intel-compilers-2022.2.1|x|x|x|x|x|x| +|impi/2021.6.0-intel-compilers-2022.1.0|x|x|x|x|x|x| +|impi/2021.4.0-intel-compilers-2021.4.0|x|x|x|x|x|x| +|impi/2021.2.0-intel-compilers-2021.2.0|-|x|x|-|x|x| +|impi/2019.9.304-iccifortcuda-2020b|-|-|-|-|x|-| +|impi/2019.9.304-iccifort-2020.4.304|x|x|x|x|x|x| +|impi/2019.9.304-iccifort-2020.1.217|x|x|x|x|x|x| +|impi/2019.9.304-iccifort-2019.5.281|-|x|x|-|x|x| +|impi/2019.7.217-iccifortcuda-2020a|-|-|-|-|x|-| +|impi/2019.7.217-iccifort-2020.1.217|-|x|x|-|x|x| +|impi/2019.7.217-iccifort-2019.5.281|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/imutils.md b/mkdocs/docs/HPC/only/gent/available_software/detail/imutils.md new file mode 100644 index 000000000000..2b18425a3c77 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/imutils.md @@ -0,0 +1,29 @@ +--- +hide: + - toc +--- + +imutils +======= + + +A series of convenience functions to make basic image processing operations such as translation,rotation, resizing, skeletonization, and displaying Matplotlib images easier with OpenCV and Python. + +https://github.com/jrosebr1/imutils +# Available modules + + +The overview below shows which imutils installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using imutils, load one of these modules using a `module load` command like: + +```shell +module load imutils/0.5.4-fosscuda-2020b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|imutils/0.5.4-fosscuda-2020b|x|-|-|-|x|-| +|imutils/0.5.4-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/inferCNV.md b/mkdocs/docs/HPC/only/gent/available_software/detail/inferCNV.md index d2831a0eece5..c92e9097be2f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/inferCNV.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/inferCNV.md @@ -6,6 +6,10 @@ hide: inferCNV ======== + +InferCNV is used to explore tumor single cell RNA-Seq data to identify evidence for somatic large-scale chromosomal copy number alterations, such as gains or deletions of entire chromosomes or large segments of chromosomes. + +https://github.com/broadinstitute/inferCNV/wiki # Available modules @@ -17,10 +21,23 @@ To start using inferCNV, load one of these modules using a `module load` command module load inferCNV/1.12.0-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|inferCNV/1.12.0-foss-2022a-R-4.2.1|x|x|x|x|x|x| +|inferCNV/1.12.0-foss-2021b-R-4.2.0|x|x|x|-|x|x| +|inferCNV/1.3.3-foss-2020b|x|x|x|x|x|x| + + +### inferCNV/1.12.0-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: + +infercnv-1.12.0, phyclust-0.1-33 + +### inferCNV/1.12.0-foss-2021b-R-4.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|inferCNV/1.12.0-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| -|inferCNV/1.12.0-foss-2021b-R-4.2.0|x|x|x|-|x|x|x|x| -|inferCNV/1.3.3-foss-2020b|x|x|x|x|x|x|x|x| +infercnv-1.12.0, parallelDist-0.2.6, phyclust-0.1-30 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/infercnvpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/infercnvpy.md index 990ac7f7975a..594a18f647e2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/infercnvpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/infercnvpy.md @@ -6,6 +6,10 @@ hide: infercnvpy ========== + +Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy. + +https://github.com/icbi-lab/infercnvpy # Available modules @@ -17,9 +21,22 @@ To start using infercnvpy, load one of these modules using a `module load` comma module load infercnvpy/0.4.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|infercnvpy/0.4.2-foss-2022a|x|x|x|x|x|x| +|infercnvpy/0.4.0-foss-2021b|x|x|x|-|x|x| + + +### infercnvpy/0.4.2-foss-2022a + +This is a list of extensions included in the module: + +gtfparse-2.0.1, infercnvpy-0.4.2, pyreadr-0.4.7, session-info-1.0.0, setuptools-67.6.1 + +### infercnvpy/0.4.0-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|infercnvpy/0.4.2-foss-2022a|x|x|x|x|x|x|x|x| -|infercnvpy/0.4.0-foss-2021b|x|x|x|-|x|x|x|x| +gtfparse-1.2.1, infercnvpy-0.4.0, pyreadr-0.4.7, session_info-1.0.0, setuptools-65.6.0, tqdm-4.64.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/inflection.md b/mkdocs/docs/HPC/only/gent/available_software/detail/inflection.md new file mode 100644 index 000000000000..b48bbeb1000d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/inflection.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +inflection +========== + + +inflection is a package that finds the inflection point of a planar curve which is given as a data frame of discrete (xi,yi) points + +https://github.com/dchristop/inflection +# Available modules + + +The overview below shows which inflection installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using inflection, load one of these modules using a `module load` command like: + +```shell +module load inflection/1.3.5-foss-2023a-R-4.3.2 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|inflection/1.3.5-foss-2023a-R-4.3.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intel-compilers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intel-compilers.md index 831c8abc0fa6..012695deb32c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intel-compilers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intel-compilers.md @@ -6,6 +6,10 @@ hide: intel-compilers =============== + +Intel C, C++ & Fortran compilers (classic and oneAPI) + +https://software.intel.com/content/www/us/en/develop/tools/oneapi/hpc-toolkit.html # Available modules @@ -17,11 +21,12 @@ To start using intel-compilers, load one of these modules using a `module load` module load intel-compilers/2023.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|intel-compilers/2023.1.0|x|x|x|x|x|x|x|x| -|intel-compilers/2022.1.0|x|x|x|x|x|x|x|x| -|intel-compilers/2021.4.0|x|x|x|x|x|x|x|x| -|intel-compilers/2021.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|intel-compilers/2023.1.0|x|x|x|x|x|x| +|intel-compilers/2022.2.1|x|x|x|x|x|x| +|intel-compilers/2022.1.0|x|x|x|x|x|x| +|intel-compilers/2021.4.0|x|x|x|x|x|x| +|intel-compilers/2021.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intel.md index d236cc73f53a..a4ca165cd2b2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intel.md @@ -6,6 +6,10 @@ hide: intel ===== + +Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL). + +https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain # Available modules @@ -17,14 +21,15 @@ To start using intel, load one of these modules using a `module load` command li module load intel/2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|intel/2023a|x|x|x|x|x|x|x|x| -|intel/2022a|x|x|x|x|x|x|x|x| -|intel/2021b|x|x|x|x|x|x|x|x| -|intel/2021a|-|x|x|-|x|x|x|x| -|intel/2020b|-|x|x|x|x|x|x|x| -|intel/2020a|x|x|x|x|x|x|x|x| -|intel/2019b|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|intel/2023a|x|x|x|x|x|x| +|intel/2022b|x|x|x|x|x|x| +|intel/2022a|x|x|x|x|x|x| +|intel/2021b|x|x|x|x|x|x| +|intel/2021a|-|x|x|-|x|x| +|intel/2020b|-|x|x|x|x|x| +|intel/2020a|x|x|x|x|x|x| +|intel/2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intelcuda.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intelcuda.md index f2299e3c72f3..1222bf4a6c24 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intelcuda.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intelcuda.md @@ -6,6 +6,10 @@ hide: intelcuda ========= + +Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL, with CUDA toolkit + +(none) # Available modules @@ -17,10 +21,10 @@ To start using intelcuda, load one of these modules using a `module load` comman module load intelcuda/2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|intelcuda/2020b|-|-|-|-|x|-|-|-| -|intelcuda/2020a|-|-|-|-|x|-|-|-| -|intelcuda/2019b|-|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|intelcuda/2020b|-|-|-|-|x|-| +|intelcuda/2020a|-|-|-|-|x|-| +|intelcuda/2019b|-|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree-python.md index 8ce018b8f3f4..1a0636b4f895 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree-python.md @@ -6,6 +6,10 @@ hide: intervaltree-python =================== + +A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment. + +https://github.com/chaimleib/intervaltree # Available modules @@ -17,10 +21,10 @@ To start using intervaltree-python, load one of these modules using a `module lo module load intervaltree-python/3.1.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|intervaltree-python/3.1.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|intervaltree-python/3.1.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|intervaltree-python/3.1.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|intervaltree-python/3.1.0-GCCcore-11.3.0|x|x|x|x|x|x| +|intervaltree-python/3.1.0-GCCcore-11.2.0|x|x|x|-|x|x| +|intervaltree-python/3.1.0-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree.md index c99b0d3a0315..a371be77956d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intervaltree.md @@ -6,6 +6,10 @@ hide: intervaltree ============ + +An interval tree can be used to efficiently find a set of numeric intervals overlapping or containing another interval. This library provides a basic implementation of an interval tree using C++ templates, allowing the insertion of arbitrary types into the tree. + +https://github.com/ekg/intervaltree # Available modules @@ -14,11 +18,12 @@ The overview below shows which intervaltree installations are available per HPC- To start using intervaltree, load one of these modules using a `module load` command like: ```shell -module load intervaltree/0.1-GCCcore-10.2.0 +module load intervaltree/0.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|intervaltree/0.1-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|intervaltree/0.1-GCCcore-11.3.0|x|x|x|x|x|x| +|intervaltree/0.1-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/intltool.md b/mkdocs/docs/HPC/only/gent/available_software/detail/intltool.md index 417cbdb387bd..99ced856e250 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/intltool.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/intltool.md @@ -6,6 +6,10 @@ hide: intltool ======== + +intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files. + +http://freedesktop.org/wiki/Software/intltool/ # Available modules @@ -17,16 +21,16 @@ To start using intltool, load one of these modules using a `module load` command module load intltool/0.51.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|intltool/0.51.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|intltool/0.51.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|intltool/0.51.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|intltool/0.51.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|intltool/0.51.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|intltool/0.51.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|intltool/0.51.0-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|intltool/0.51.0-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|intltool/0.51.0-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|intltool/0.51.0-GCCcore-12.3.0|x|x|x|x|x|x| +|intltool/0.51.0-GCCcore-12.2.0|x|x|x|x|x|x| +|intltool/0.51.0-GCCcore-11.3.0|x|x|x|x|x|x| +|intltool/0.51.0-GCCcore-11.2.0|x|x|x|x|x|x| +|intltool/0.51.0-GCCcore-10.3.0|x|x|x|x|x|x| +|intltool/0.51.0-GCCcore-10.2.0|x|x|x|x|x|x| +|intltool/0.51.0-GCCcore-9.3.0|x|x|x|x|x|x| +|intltool/0.51.0-GCCcore-8.3.0|x|x|x|-|x|x| +|intltool/0.51.0-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iodata.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iodata.md index f1e9fd669d8f..136cc9048694 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iodata.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iodata.md @@ -6,6 +6,10 @@ hide: iodata ====== + +Python library for reading, writing, and converting computational chemistry file formats and generating input files. + +https://github.com/theochem/iodata # Available modules @@ -17,8 +21,8 @@ To start using iodata, load one of these modules using a `module load` command l module load iodata/1.0.0a2-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|iodata/1.0.0a2-intel-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|iodata/1.0.0a2-intel-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iomkl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iomkl.md index 61ccadc283bb..1187bacc2244 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iomkl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iomkl.md @@ -6,6 +6,10 @@ hide: iomkl ===== + +Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI. + +https://software.intel.com/en-us/intel-cluster-toolkit-compiler/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which iomkl installations are available per HPC-UGent T To start using iomkl, load one of these modules using a `module load` command like: ```shell -module load iomkl/2020b +module load iomkl/2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|iomkl/2020b|x|x|x|x|x|x|x|x| -|iomkl/2020a|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|iomkl/2021a|x|x|x|x|x|x| +|iomkl/2020b|x|x|x|x|x|x| +|iomkl/2020a|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/iompi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/iompi.md index 8b140271f072..bc7ec261afcc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/iompi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/iompi.md @@ -6,6 +6,10 @@ hide: iompi ===== + +Intel C/C++ and Fortran compilers, alongside Open MPI. + +https://software.intel.com/en-us/intel-cluster-toolkit-compiler/ # Available modules @@ -17,10 +21,10 @@ To start using iompi, load one of these modules using a `module load` command li module load iompi/2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|iompi/2021a|-|-|x|-|x|x|x|x| -|iompi/2020b|x|x|x|x|x|x|x|x| -|iompi/2020a|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|iompi/2021a|x|x|x|x|x|x| +|iompi/2020b|x|x|x|x|x|x| +|iompi/2020a|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/isoCirc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/isoCirc.md index c62326eba601..2bb36be30022 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/isoCirc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/isoCirc.md @@ -6,6 +6,10 @@ hide: isoCirc ======= + +isoCirc: computational pipeline to identify high-confidenceBSJs and full-length circRNA isoforms from isoCirc long-read data + +https://github.com/Xinglab/isoCirc # Available modules @@ -17,8 +21,15 @@ To start using isoCirc, load one of these modules using a `module load` command module load isoCirc/1.0.4-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|isoCirc/1.0.4-foss-2020b|-|x|x|x|x|x| + + +### isoCirc/1.0.4-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|isoCirc/1.0.4-foss-2020b|-|x|x|x|x|x|x|x| +argcomplete-1.12.3, argh-0.26.2, crlibm-1.0.3, gffutils-0.10.1, isoCirc-1.0.4, mappy-2.20, pyinterval-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jax.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jax.md index dd06390298ca..ca8645498e90 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jax.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jax.md @@ -6,6 +6,10 @@ hide: jax === + +Composable transformations of Python+NumPy programs:differentiate, vectorize, JIT to GPU/TPU, and more + +https://pypi.python.org/pypi/jax # Available modules @@ -17,16 +21,71 @@ To start using jax, load one of these modules using a `module load` command like module load jax/0.3.25-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|jax/0.3.25-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|jax/0.3.25-foss-2022a|x|x|x|x|x|x|x|x| -|jax/0.3.23-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-|-|-| -|jax/0.3.9-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|jax/0.3.9-foss-2021a|x|x|x|x|x|x|x|x| -|jax/0.2.24-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|jax/0.2.24-foss-2021a|-|x|x|-|x|x|x|x| -|jax/0.2.19-fosscuda-2020b|x|-|-|-|x|-|-|-| -|jax/0.2.19-foss-2020b|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|jax/0.3.25-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|jax/0.3.25-foss-2022a|x|x|x|x|x|x| +|jax/0.3.23-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-| +|jax/0.3.9-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|jax/0.3.9-foss-2021a|x|x|x|x|x|x| +|jax/0.2.24-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|jax/0.2.24-foss-2021a|-|x|x|-|x|x| +|jax/0.2.19-fosscuda-2020b|x|-|-|-|x|-| +|jax/0.2.19-foss-2020b|x|x|x|x|x|x| + + +### jax/0.3.25-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +etils-0.8.0, jax-0.3.25, opt_einsum-3.3.0 + +### jax/0.3.25-foss-2022a + +This is a list of extensions included in the module: + +etils-0.8.0, jax-0.3.25, opt_einsum-3.3.0 + +### jax/0.3.23-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +etils-0.8.0, jax-0.3.23, opt_einsum-3.3.0 + +### jax/0.3.9-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +jax-0.3.9, opt_einsum-3.3.0 + +### jax/0.3.9-foss-2021a + +This is a list of extensions included in the module: + +jax-0.3.9, opt_einsum-3.3.0 + +### jax/0.2.24-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +jax-0.2.24, opt_einsum-3.3.0 + +### jax/0.2.24-foss-2021a + +This is a list of extensions included in the module: + +jax-0.2.24, opt_einsum-3.3.0 + +### jax/0.2.19-fosscuda-2020b + +This is a list of extensions included in the module: + +jax-0.2.19, opt_einsum-3.3.0 + +### jax/0.2.19-foss-2020b + +This is a list of extensions included in the module: + +jax-0.2.19, opt_einsum-3.3.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jbigkit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jbigkit.md index 8537854f6c3b..1b396ba33e2b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jbigkit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jbigkit.md @@ -6,6 +6,10 @@ hide: jbigkit ======= + +JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents. + +https://www.cl.cam.ac.uk/~mgk25/jbigkit/ # Available modules @@ -14,16 +18,18 @@ The overview below shows which jbigkit installations are available per HPC-UGent To start using jbigkit, load one of these modules using a `module load` command like: ```shell -module load jbigkit/2.1-GCCcore-12.2.0 +module load jbigkit/2.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|jbigkit/2.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|jbigkit/2.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|jbigkit/2.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|jbigkit/2.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|jbigkit/2.1-GCCcore-10.2.0|x|-|x|x|x|x|x|x| -|jbigkit/2.1-GCCcore-9.3.0|-|-|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|jbigkit/2.1-GCCcore-13.2.0|x|x|x|x|x|x| +|jbigkit/2.1-GCCcore-12.3.0|x|x|x|x|x|x| +|jbigkit/2.1-GCCcore-12.2.0|x|x|x|x|x|x| +|jbigkit/2.1-GCCcore-11.3.0|x|x|x|x|x|x| +|jbigkit/2.1-GCCcore-11.2.0|x|x|x|x|x|x| +|jbigkit/2.1-GCCcore-10.3.0|x|x|x|x|x|x| +|jbigkit/2.1-GCCcore-10.2.0|x|-|x|x|x|x| +|jbigkit/2.1-GCCcore-9.3.0|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jemalloc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jemalloc.md index e9e891fc8c06..28fd2e0b2db5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jemalloc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jemalloc.md @@ -6,6 +6,10 @@ hide: jemalloc ======== + +jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support. + +http://jemalloc.net # Available modules @@ -17,13 +21,13 @@ To start using jemalloc, load one of these modules using a `module load` command module load jemalloc/5.3.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|jemalloc/5.3.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|jemalloc/5.2.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|jemalloc/5.2.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|jemalloc/5.2.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|jemalloc/5.2.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|jemalloc/5.2.1-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|jemalloc/5.3.0-GCCcore-11.3.0|x|x|x|x|x|x| +|jemalloc/5.2.1-GCCcore-11.3.0|x|x|x|x|x|x| +|jemalloc/5.2.1-GCCcore-11.2.0|x|x|x|x|x|x| +|jemalloc/5.2.1-GCCcore-10.3.0|x|x|x|-|x|x| +|jemalloc/5.2.1-GCCcore-10.2.0|-|x|x|x|x|x| +|jemalloc/5.2.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jobcli.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jobcli.md index ce758efbe701..f17d43ee42f4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jobcli.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jobcli.md @@ -6,6 +6,10 @@ hide: jobcli ====== + +Resource manager agnostic tool for submitting & managing jobs on HPC clusters + +https://github.com/hpcugent/jobcli # Available modules @@ -17,8 +21,8 @@ To start using jobcli, load one of these modules using a `module load` command l module load jobcli/0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|jobcli/0.0|-|x|-|-|-|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|jobcli/0.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/joypy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/joypy.md index e130c963854c..2f4cbdda4efa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/joypy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/joypy.md @@ -6,6 +6,10 @@ hide: joypy ===== + +Joyplots in Python with matplotlib & pandas + +https://github.com/sbebo/joypy # Available modules @@ -17,9 +21,9 @@ To start using joypy, load one of these modules using a `module load` command li module load joypy/0.2.4-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|joypy/0.2.4-intel-2020b|-|x|x|-|x|x|x|x| -|joypy/0.2.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|joypy/0.2.4-intel-2020b|-|x|x|-|x|x| +|joypy/0.2.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/json-c.md b/mkdocs/docs/HPC/only/gent/available_software/detail/json-c.md index abea65e6f633..98a3986914ec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/json-c.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/json-c.md @@ -6,6 +6,10 @@ hide: json-c ====== + +JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSONobjects. + +https://github.com/json-c/json-c # Available modules @@ -14,13 +18,14 @@ The overview below shows which json-c installations are available per HPC-UGent To start using json-c, load one of these modules using a `module load` command like: ```shell -module load json-c/0.16-GCCcore-12.2.0 +module load json-c/0.16-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|json-c/0.16-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|json-c/0.15-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|json-c/0.15-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|json-c/0.16-GCCcore-12.3.0|x|x|x|x|x|x| +|json-c/0.16-GCCcore-12.2.0|x|x|x|x|x|x| +|json-c/0.15-GCCcore-10.3.0|-|x|x|-|x|x| +|json-c/0.15-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-contrib-nbextensions.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-contrib-nbextensions.md new file mode 100644 index 000000000000..0f24c9252b5a --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-contrib-nbextensions.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +jupyter-contrib-nbextensions +============================ + + +A collection of various notebook extensions for Jupyter + +https://github.com/ipython-contrib/jupyter_contrib_nbextensions +# Available modules + + +The overview below shows which jupyter-contrib-nbextensions installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using jupyter-contrib-nbextensions, load one of these modules using a `module load` command like: + +```shell +module load jupyter-contrib-nbextensions/0.7.0-GCCcore-11.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|jupyter-contrib-nbextensions/0.7.0-GCCcore-11.3.0|x|x|x|x|x|x| + + +### jupyter-contrib-nbextensions/0.7.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +jupyter_contrib_core-0.4.2, jupyter_contrib_nbextensions-0.7.0, jupyter_highlight_selected_word-0.2.0, jupyter_nbextensions_configurator-0.6.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server-proxy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server-proxy.md new file mode 100644 index 000000000000..6de6413a0c72 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server-proxy.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +jupyter-server-proxy +==================== + + +Jupyter Server Proxy lets you run arbitrary external processes(such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc)alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the pythonpackage that provides the main functionality, the JupyterLab extension(@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher windowto get to RStudio for example. + +https://github.com/jupyterhub/jupyter-server-proxy +# Available modules + + +The overview below shows which jupyter-server-proxy installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using jupyter-server-proxy, load one of these modules using a `module load` command like: + +```shell +module load jupyter-server-proxy/3.2.2-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|jupyter-server-proxy/3.2.2-GCCcore-12.2.0|x|x|x|x|x|x| + + +### jupyter-server-proxy/3.2.2-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +jupyter-server-proxy-3.2.2, simpervisor-0.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server.md index 8308e68940c3..f444df926e04 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jupyter-server.md @@ -6,6 +6,10 @@ hide: jupyter-server ============== + +The Jupyter Server provides the backend (i.e. the core services, APIs, and RESTendpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, andVoila. + +https://jupyter.org/ # Available modules @@ -14,11 +18,32 @@ The overview below shows which jupyter-server installations are available per HP To start using jupyter-server, load one of these modules using a `module load` command like: ```shell -module load jupyter-server/1.21.0-GCCcore-11.3.0 +module load jupyter-server/2.7.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|jupyter-server/2.7.2-GCCcore-12.3.0|x|x|x|x|x|x| +|jupyter-server/2.7.0-GCCcore-12.2.0|x|x|x|x|x|x| +|jupyter-server/1.21.0-GCCcore-11.3.0|x|x|x|x|x|x| + + +### jupyter-server/2.7.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +anyio-3.7.1, argon2-cffi-bindings-21.2.0, argon2_cffi-23.1.0, arrow-1.2.3, bleach-6.0.0, comm-0.1.4, debugpy-1.6.7.post1, defusedxml-0.7.1, deprecation-2.1.0, fastjsonschema-2.18.0, hatch_jupyter_builder-0.8.3, hatch_nodejs_version-0.3.1, ipykernel-6.25.1, ipython_genutils-0.2.0, ipywidgets-8.1.0, jsonschema-4.18.0, jsonschema_specifications-2023.7.1, jupyter_client-8.3.0, jupyter_core-5.3.1, jupyter_events-0.7.0, jupyter_packaging-0.12.3, jupyter_server-2.7.2, jupyter_server_terminals-0.4.4, jupyterlab_pygments-0.2.2, jupyterlab_widgets-3.0.8, mistune-3.0.1, nbclient-0.8.0, nbconvert-7.7.4, nbformat-5.9.2, nest_asyncio-1.5.7, notebook_shim-0.2.3, overrides-7.4.0, pandocfilters-1.5.0, prometheus_client-0.17.1, python-json-logger-2.0.7, referencing-0.30.2, rfc3339_validator-0.1.4, rfc3986_validator-0.1.1, rpds_py-0.9.2, Send2Trash-1.8.2, sniffio-1.3.0, terminado-0.17.1, tinycss2-1.2.1, websocket-client-1.6.1, widgetsnbextension-4.0.8 + +### jupyter-server/2.7.0-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +anyio-3.7.1, argon2-cffi-21.3.0, argon2-cffi-bindings-21.2.0, arrow-1.2.3, bleach-6.0.0, comm-0.1.3, debugpy-1.6.7, defusedxml-0.7.1, deprecation-2.1.0, fastjsonschema-2.17.1, hatch_jupyter_builder-0.8.3, hatch_nodejs_version-0.3.1, ipykernel-6.25.0, ipython_genutils-0.2.0, ipywidgets-8.0.7, jupyter_client-8.3.0, jupyter_core-5.3.1, jupyter_events-0.6.3, jupyter_packaging-0.12.3, jupyter_server-2.7.0, jupyter_server_terminals-0.4.4, jupyterlab_pygments-0.2.2, jupyterlab_widgets-3.0.8, mistune-3.0.1, nbclassic-1.0.0, nbclient-0.8.0, nbconvert-7.7.2, nbformat-5.9.1, nest_asyncio-1.5.7, notebook_shim-0.2.3, overrides-7.3.1, pandocfilters-1.5.0, prometheus_client-0.17.1, python-json-logger-2.0.7, pyzmq-25.1.0, rfc3339_validator-0.1.4, rfc3986_validator-0.1.1, Send2Trash-1.8.2, sniffio-1.3.0, terminado-0.17.1, tinycss2-1.2.1, tornado-6.3.2, websocket-client-1.6.1, widgetsnbextension-4.0.8 + +### jupyter-server/1.21.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|jupyter-server/1.21.0-GCCcore-11.3.0|-|-|x|-|x|-|-|-| +anyio-3.6.1, jupyter_server-1.21.0, nbclassic-0.4.8, notebook_shim-0.1.0, sniffio-1.3.0, websocket-client-1.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/jxrlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/jxrlib.md index 51bc0509df40..1f15d080aa4e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/jxrlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/jxrlib.md @@ -6,6 +6,10 @@ hide: jxrlib ====== + +Open source implementation of jpegxr + +https://github.com/4creators/jxrlib # Available modules @@ -17,8 +21,8 @@ To start using jxrlib, load one of these modules using a `module load` command l module load jxrlib/1.1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|jxrlib/1.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|jxrlib/1.1-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kallisto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kallisto.md index fc663dbf37f9..50603dd1d413 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kallisto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kallisto.md @@ -6,6 +6,10 @@ hide: kallisto ======== + +kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. + +https://pachterlab.github.io/kallisto/ # Available modules @@ -17,12 +21,12 @@ To start using kallisto, load one of these modules using a `module load` command module load kallisto/0.48.0-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|kallisto/0.48.0-gompi-2022a|x|x|x|x|x|x|x|x| -|kallisto/0.46.1-intel-2020a|-|x|-|-|-|-|-|-| -|kallisto/0.46.1-iimpi-2020b|-|x|x|x|x|x|x|x| -|kallisto/0.46.1-iimpi-2020a|-|x|x|-|x|x|x|x| -|kallisto/0.46.1-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|kallisto/0.48.0-gompi-2022a|x|x|x|x|x|x| +|kallisto/0.46.1-intel-2020a|-|x|-|-|-|-| +|kallisto/0.46.1-iimpi-2020b|-|x|x|x|x|x| +|kallisto/0.46.1-iimpi-2020a|-|x|x|-|x|x| +|kallisto/0.46.1-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kb-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kb-python.md index fc9101428240..ad3a773bbb82 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kb-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kb-python.md @@ -6,6 +6,10 @@ hide: kb-python ========= + +kallisto | bustools is a workflow for pre-processing single-cell RNA-seq data. Pre-processing single-cell RNA-seq involves: (1) association of reads with their cells of origin, (2) collapsing of reads according to unique molecular identifiers (UMIs), and (3) generation of gene or feature counts from the reads to generate a cell x gene matrix. + +https://www.kallistobus.tools/ # Available modules @@ -17,8 +21,15 @@ To start using kb-python, load one of these modules using a `module load` comman module load kb-python/0.27.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|kb-python/0.27.3-foss-2022a|x|x|x|x|x|x| + + +### kb-python/0.27.3-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|kb-python/0.27.3-foss-2022a|x|x|x|x|x|x|x|x| +kb-python-0.27.3, ngs-tools-1.8.3, plotly-5.15.0, shortuuid-1.0.11, tenacity-8.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kim-api.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kim-api.md index 5941c5fab4c3..e0d2e1d585c3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kim-api.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kim-api.md @@ -6,6 +6,10 @@ hide: kim-api ======= + +Open Knowledgebase of Interatomic Models.KIM is an API and OpenKIM is a collection of interatomic models (potentials) foratomistic simulations. This is a library that can be used by simulation programsto get access to the models in the OpenKIM database.This EasyBuild only installs the API, the models can be installed with thepackage openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAMEor kim-api-collections-management install user OpenKIMto install them all. + +https://openkim.org/ # Available modules @@ -17,12 +21,12 @@ To start using kim-api, load one of these modules using a `module load` command module load kim-api/2.3.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|kim-api/2.3.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|kim-api/2.2.1-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|kim-api/2.1.3-intel-2020a|-|x|x|-|x|x|x|x| -|kim-api/2.1.3-intel-2019b|-|x|x|-|x|x|-|x| -|kim-api/2.1.3-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|kim-api/2.3.0-GCCcore-11.2.0|x|x|x|-|x|x| +|kim-api/2.2.1-GCCcore-10.3.0|-|x|x|-|x|x| +|kim-api/2.1.3-intel-2020a|-|x|x|-|x|x| +|kim-api/2.1.3-intel-2019b|-|x|x|-|x|x| +|kim-api/2.1.3-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kineto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kineto.md index 3aacff6ce9ad..1ab5d1b1a3d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kineto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kineto.md @@ -6,6 +6,10 @@ hide: kineto ====== + +A CPU+GPU Profiling library that provides access to timeline traces and hardware performance counters + +https://github.com/pytorch/kineto # Available modules @@ -17,8 +21,8 @@ To start using kineto, load one of these modules using a `module load` command l module load kineto/0.4.0-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|kineto/0.4.0-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|kineto/0.4.0-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kma.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kma.md index ce659026e0c3..18634b7b718b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/kma.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kma.md @@ -6,6 +6,10 @@ hide: kma === + +KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. + +https://bitbucket.org/genomicepidemiology/kma # Available modules @@ -17,8 +21,8 @@ To start using kma, load one of these modules using a `module load` command like module load kma/1.2.22-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|kma/1.2.22-intel-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|kma/1.2.22-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/kneaddata.md b/mkdocs/docs/HPC/only/gent/available_software/detail/kneaddata.md new file mode 100644 index 000000000000..0bdee4cacbfc --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/kneaddata.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +kneaddata +========= + + +KneadData is a tool designed to perform quality control on metagenomic andmetatranscriptomic sequencing data, especially data from microbiome experiments. + +http://huttenhower.sph.harvard.edu/kneaddata +# Available modules + + +The overview below shows which kneaddata installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using kneaddata, load one of these modules using a `module load` command like: + +```shell +module load kneaddata/0.12.0-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|kneaddata/0.12.0-foss-2022a|x|x|x|x|x|x| + + +### kneaddata/0.12.0-foss-2022a + +This is a list of extensions included in the module: + +kneaddata-0.12.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/krbalancing.md b/mkdocs/docs/HPC/only/gent/available_software/detail/krbalancing.md index fe6abe849c62..3ffd8892d284 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/krbalancing.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/krbalancing.md @@ -6,6 +6,10 @@ hide: krbalancing =========== + +A C++ extension for Python which computes K.R. balanced matrices. + +https://github.com/deeptools/Knight-Ruiz-Matrix-balancing-algorithm # Available modules @@ -17,8 +21,15 @@ To start using krbalancing, load one of these modules using a `module load` comm module load krbalancing/0.5.0b0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|krbalancing/0.5.0b0-GCCcore-11.3.0|x|x|x|x|x|x| + + +### krbalancing/0.5.0b0-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|krbalancing/0.5.0b0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +krbalancing-0.5.0b0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lancet.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lancet.md index 1e5af64b2b72..c7311727a081 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lancet.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lancet.md @@ -6,6 +6,10 @@ hide: lancet ====== + +Lancet is a somatic variant caller (SNVs and indels) for short read data. + +https://github.com/nygenome/lancet # Available modules @@ -17,8 +21,8 @@ To start using lancet, load one of these modules using a `module load` command l module load lancet/1.1.0-iccifort-2019.5.281 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|lancet/1.1.0-iccifort-2019.5.281|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|lancet/1.1.0-iccifort-2019.5.281|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lavaan.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lavaan.md index b64e7808de0f..ba822932590a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lavaan.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lavaan.md @@ -6,6 +6,10 @@ hide: lavaan ====== + +Fit a variety of latent variable models, including confirmatory factor analysis, structural equation modeling and latent growth curve models. + +https://cran.r-project.org/web/packages/lavaan # Available modules @@ -17,8 +21,8 @@ To start using lavaan, load one of these modules using a `module load` command l module load lavaan/0.6-9-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|lavaan/0.6-9-foss-2021a-R-4.1.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|lavaan/0.6-9-foss-2021a-R-4.1.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/leafcutter.md b/mkdocs/docs/HPC/only/gent/available_software/detail/leafcutter.md index 7e8924f57713..83cb90d8371b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/leafcutter.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/leafcutter.md @@ -6,6 +6,10 @@ hide: leafcutter ========== + +Leafcutter quantifies RNA splicing variation using short-read RNA-seq data. The core idea is to leverage spliced reads (reads that span an intron) to quantify (differential) intron usage across samples. The advantages of this approach include: easy detection of novel introns, modeling of more complex splicing events than exonic PSI, avoiding the challenge of isoform abundance estimation, simple, computationally efficient algorithms scaling to 100s or even 1000s of samples. For details please see our bioRxiv preprint and corresponding Nature Genetics publication. + +http://davidaknowles.github.io/leafcutter/index.html # Available modules @@ -17,8 +21,8 @@ To start using leafcutter, load one of these modules using a `module load` comma module load leafcutter/0.2.9-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|leafcutter/0.2.9-foss-2022b-R-4.2.2|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|leafcutter/0.2.9-foss-2022b-R-4.2.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/legacy-job-wrappers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/legacy-job-wrappers.md index ce65ba96718f..103ade574f0d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/legacy-job-wrappers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/legacy-job-wrappers.md @@ -6,6 +6,8 @@ hide: legacy-job-wrappers =================== + +Legacy wrappers for job commands (qsub, qstat, ...) # Available modules @@ -17,8 +19,8 @@ To start using legacy-job-wrappers, load one of these modules using a `module lo module load legacy-job-wrappers/0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|legacy-job-wrappers/0.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|legacy-job-wrappers/0.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/leidenalg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/leidenalg.md index a2ebd77e2162..221f3897f610 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/leidenalg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/leidenalg.md @@ -6,6 +6,10 @@ hide: leidenalg ========= + +Implementation of the Leiden algorithm for various qualityfunctions to be used with igraph in Python. + +https://github.com/vtraag/leidenalg # Available modules @@ -14,16 +18,60 @@ The overview below shows which leidenalg installations are available per HPC-UGe To start using leidenalg, load one of these modules using a `module load` command like: ```shell -module load leidenalg/0.9.1-foss-2022a +module load leidenalg/0.10.2-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|leidenalg/0.10.2-foss-2023a|x|x|x|x|x|x| +|leidenalg/0.9.1-foss-2022a|x|x|x|x|x|x| +|leidenalg/0.8.8-foss-2021b|x|x|x|x|x|x| +|leidenalg/0.8.7-foss-2021a|x|x|x|x|x|x| +|leidenalg/0.8.3-fosscuda-2020b|-|-|-|-|x|-| +|leidenalg/0.8.3-foss-2020b|-|x|x|x|x|x| +|leidenalg/0.8.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### leidenalg/0.10.2-foss-2023a + +This is a list of extensions included in the module: + +ddt-1.7.2, leidenalg-0.10.2 + +### leidenalg/0.9.1-foss-2022a + +This is a list of extensions included in the module: + +ddt-1.6.0, leidenalg-0.9.1 + +### leidenalg/0.8.8-foss-2021b + +This is a list of extensions included in the module: + +ddt-1.4.4, leidenalg-0.8.8 + +### leidenalg/0.8.7-foss-2021a + +This is a list of extensions included in the module: + +ddt-1.4.2, leidenalg-0.8.7 + +### leidenalg/0.8.3-fosscuda-2020b + +This is a list of extensions included in the module: + +ddt-1.4.2, leidenalg-0.8.3 + +### leidenalg/0.8.3-foss-2020b + +This is a list of extensions included in the module: + +ddt-1.4.2, leidenalg-0.8.3 + +### leidenalg/0.8.2-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|leidenalg/0.9.1-foss-2022a|x|x|x|x|x|x|x|x| -|leidenalg/0.8.8-foss-2021b|x|x|x|x|x|x|x|x| -|leidenalg/0.8.7-foss-2021a|x|x|x|x|x|x|x|x| -|leidenalg/0.8.3-fosscuda-2020b|-|-|-|-|x|-|-|-| -|leidenalg/0.8.3-foss-2020b|-|x|x|x|x|x|x|x| -|leidenalg/0.8.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +ddt-1.4.1, leidenalg-0.8.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lftp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lftp.md index d9a160f84754..efa30c57276a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lftp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lftp.md @@ -6,6 +6,10 @@ hide: lftp ==== + +LFTP is a sophisticated ftp/http client, and a file transfer program supportinga number of network protocols. Like BASH, it has job control and uses the readline library forinput. It has bookmarks, a built-in mirror command, and can transfer several files in parallel.It was designed with reliability in mind. + +https://lftp.yar.ru # Available modules @@ -17,8 +21,8 @@ To start using lftp, load one of these modules using a `module load` command lik module load lftp/4.9.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|lftp/4.9.2-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|lftp/4.9.2-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libBigWig.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libBigWig.md index f0111a084406..a207ba6bdf5d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libBigWig.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libBigWig.md @@ -6,6 +6,10 @@ hide: libBigWig ========= + +A C library for handling bigWig files + +https://github.com/dpryan79/libBigWig # Available modules @@ -17,8 +21,8 @@ To start using libBigWig, load one of these modules using a `module load` comman module load libBigWig/0.4.4-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libBigWig/0.4.4-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libBigWig/0.4.4-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libFLAME.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libFLAME.md index e905e403e050..a58e29a21c55 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libFLAME.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libFLAME.md @@ -6,6 +6,10 @@ hide: libFLAME ======== + +libFLAME is a portable library for dense matrix computations,providing much of the functionality present in LAPACK. + +https://developer.amd.com/amd-cpu-libraries/blas-library/#libflame # Available modules @@ -17,8 +21,8 @@ To start using libFLAME, load one of these modules using a `module load` command module load libFLAME/5.2.0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libFLAME/5.2.0-GCCcore-10.2.0|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libFLAME/5.2.0-GCCcore-10.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libGLU.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libGLU.md index 9f73c9e0f8db..5722e460802d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libGLU.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libGLU.md @@ -6,6 +6,10 @@ hide: libGLU ====== + +The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. + +https://mesa.freedesktop.org/archive/glu/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which libGLU installations are available per HPC-UGent To start using libGLU, load one of these modules using a `module load` command like: ```shell -module load libGLU/9.0.2-GCCcore-12.2.0 +module load libGLU/9.0.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libGLU/9.0.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libGLU/9.0.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libGLU/9.0.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libGLU/9.0.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libGLU/9.0.1-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libGLU/9.0.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libGLU/9.0.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|libGLU/9.0.0-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libGLU/9.0.3-GCCcore-12.3.0|x|x|x|x|x|x| +|libGLU/9.0.2-GCCcore-12.2.0|x|x|x|x|x|x| +|libGLU/9.0.2-GCCcore-11.3.0|x|x|x|x|x|x| +|libGLU/9.0.2-GCCcore-11.2.0|x|x|x|x|x|x| +|libGLU/9.0.1-GCCcore-10.3.0|x|x|x|x|x|x| +|libGLU/9.0.1-GCCcore-10.2.0|x|x|x|x|x|x| +|libGLU/9.0.1-GCCcore-9.3.0|-|x|x|-|x|x| +|libGLU/9.0.1-GCCcore-8.3.0|x|x|x|-|x|x| +|libGLU/9.0.0-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libRmath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libRmath.md index b20e9a5590ac..7d46377ccfc9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libRmath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libRmath.md @@ -6,6 +6,10 @@ hide: libRmath ======== + +The routines supporting the distribution and special functions in R and a few others are declared in C header file Rmath.h. These can be compiled into a standalone library for linking to other applications. + +https://cran.r-project.org/doc/manuals/r-release/R-admin.html#The-standalone-Rmath-library # Available modules @@ -17,8 +21,8 @@ To start using libRmath, load one of these modules using a `module load` command module load libRmath/4.1.0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libRmath/4.1.0-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libRmath/4.1.0-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libaec.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libaec.md index e4b8f35442f7..43e719e82c92 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libaec.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libaec.md @@ -6,6 +6,10 @@ hide: libaec ====== + +Libaec provides fast lossless compression of 1 up to 32 bit wide signed or unsigned integers(samples). The library achieves best results for low entropy data as often encountered in space imaginginstrument data or numerical model output from weather or climate simulations. While floating point representationsare not directly supported, they can also be efficiently coded by grouping exponents and mantissa. + +https://gitlab.dkrz.de/k202009/libaec # Available modules @@ -17,8 +21,8 @@ To start using libaec, load one of these modules using a `module load` command l module load libaec/1.0.6-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libaec/1.0.6-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libaec/1.0.6-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libaio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libaio.md index 4d6661b18383..7b7a1ec53aa2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libaio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libaio.md @@ -6,6 +6,10 @@ hide: libaio ====== + +Asynchronous input/output library that uses the kernels native interface. + +https://pagure.io/libaio # Available modules @@ -17,13 +21,13 @@ To start using libaio, load one of these modules using a `module load` command l module load libaio/0.3.113-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libaio/0.3.113-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libaio/0.3.112-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libaio/0.3.112-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|libaio/0.3.112-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|libaio/0.3.112-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|libaio/0.3.111-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libaio/0.3.113-GCCcore-12.3.0|x|x|x|x|x|x| +|libaio/0.3.112-GCCcore-11.3.0|x|x|x|x|x|x| +|libaio/0.3.112-GCCcore-11.2.0|x|x|x|x|x|x| +|libaio/0.3.112-GCCcore-10.3.0|x|x|x|-|x|x| +|libaio/0.3.112-GCCcore-10.2.0|-|x|x|x|x|x| +|libaio/0.3.111-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libarchive.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libarchive.md index 16daa63014f0..dcbc0361f4a5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libarchive.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libarchive.md @@ -6,6 +6,10 @@ hide: libarchive ========== + +Multi-format archive and compression library + +https://www.libarchive.org/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which libarchive installations are available per HPC-UG To start using libarchive, load one of these modules using a `module load` command like: ```shell -module load libarchive/3.6.2-GCCcore-12.3.0 +module load libarchive/3.7.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libarchive/3.6.2-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libarchive/3.6.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libarchive/3.6.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libarchive/3.5.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libarchive/3.5.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libarchive/3.5.1-GCCcore-8.3.0|x|-|-|-|x|-|-|-| -|libarchive/3.4.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libarchive/3.7.2-GCCcore-13.2.0|x|x|x|x|x|x| +|libarchive/3.6.2-GCCcore-12.3.0|x|x|x|x|x|x| +|libarchive/3.6.1-GCCcore-12.2.0|x|x|x|x|x|x| +|libarchive/3.6.1-GCCcore-11.3.0|x|x|x|x|x|x| +|libarchive/3.5.1-GCCcore-11.2.0|x|x|x|x|x|x| +|libarchive/3.5.1-GCCcore-10.3.0|x|x|x|x|x|x| +|libarchive/3.5.1-GCCcore-8.3.0|x|-|-|-|x|-| +|libarchive/3.4.3-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libavif.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libavif.md index 159d3a351885..cd41f9a8b917 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libavif.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libavif.md @@ -6,6 +6,10 @@ hide: libavif ======= + +This library aims to be a friendly, portable C implementation of the AV1 Image File Format,as described here: https://aomediacodec.github.io/av1-avif/ + +https://github.com/AOMediaCodec/libavif # Available modules @@ -17,8 +21,8 @@ To start using libavif, load one of these modules using a `module load` command module load libavif/0.11.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libavif/0.11.1-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libavif/0.11.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libcdms.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libcdms.md index 5051a44bd099..277422f10386 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libcdms.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libcdms.md @@ -6,6 +6,10 @@ hide: libcdms ======= + +Climate Data Management System Library. + +https://github.com/CDAT/libcdms/ # Available modules @@ -17,8 +21,8 @@ To start using libcdms, load one of these modules using a `module load` command module load libcdms/3.1.2-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libcdms/3.1.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libcdms/3.1.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libcerf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libcerf.md index bfacbbeab54d..4ff5bf596c40 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libcerf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libcerf.md @@ -6,6 +6,10 @@ hide: libcerf ======= + +libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions. + +https://jugit.fz-juelich.de/mlz/libcerf # Available modules @@ -14,16 +18,17 @@ The overview below shows which libcerf installations are available per HPC-UGent To start using libcerf, load one of these modules using a `module load` command like: ```shell -module load libcerf/2.1-GCCcore-11.3.0 +module load libcerf/2.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libcerf/2.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libcerf/1.17-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libcerf/1.17-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libcerf/1.14-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libcerf/1.13-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libcerf/1.13-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libcerf/2.3-GCCcore-12.3.0|x|x|x|x|x|x| +|libcerf/2.1-GCCcore-11.3.0|x|x|x|x|x|x| +|libcerf/1.17-GCCcore-11.2.0|x|x|x|x|x|x| +|libcerf/1.17-GCCcore-10.3.0|x|x|x|x|x|x| +|libcerf/1.14-GCCcore-10.2.0|x|x|x|x|x|x| +|libcerf/1.13-GCCcore-9.3.0|-|x|x|-|x|x| +|libcerf/1.13-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libcint.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libcint.md index 81d89727b6fd..7c3e90bca4d2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libcint.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libcint.md @@ -6,6 +6,10 @@ hide: libcint ======= + +libcint is an open source library for analytical Gaussian integrals. + +https://github.com/sunqm/libcint # Available modules @@ -14,13 +18,14 @@ The overview below shows which libcint installations are available per HPC-UGent To start using libcint, load one of these modules using a `module load` command like: ```shell -module load libcint/5.1.6-foss-2022a +module load libcint/5.5.0-gfbf-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libcint/5.1.6-foss-2022a|-|x|x|x|x|x|x|x| -|libcint/4.4.0-gomkl-2021a|x|x|x|-|x|x|x|x| -|libcint/4.4.0-foss-2021a|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libcint/5.5.0-gfbf-2022b|x|x|x|x|x|x| +|libcint/5.1.6-foss-2022a|-|x|x|x|x|x| +|libcint/4.4.0-gomkl-2021a|x|x|x|-|x|x| +|libcint/4.4.0-foss-2021a|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libdap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libdap.md index 9815f6b96968..69b798d631e0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libdap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libdap.md @@ -6,6 +6,10 @@ hide: libdap ====== + +A C++ SDK which contains an implementation of DAP 2.0 and DAP4.0. This includes both Client- and Server-side support classes. + +https://www.opendap.org/software/libdap # Available modules @@ -17,9 +21,9 @@ To start using libdap, load one of these modules using a `module load` command l module load libdap/3.20.7-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libdap/3.20.7-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|libdap/3.20.6-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libdap/3.20.7-GCCcore-10.3.0|-|x|x|-|x|x| +|libdap/3.20.6-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libde265.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libde265.md index ac6c85966a71..8a161341a87a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libde265.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libde265.md @@ -6,6 +6,10 @@ hide: libde265 ======== + +libde265 is an open source implementation of the h.265 video codec + +https://github.com/strukturag/libde265 # Available modules @@ -17,9 +21,9 @@ To start using libde265, load one of these modules using a `module load` command module load libde265/1.0.11-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libde265/1.0.11-GCC-11.3.0|x|x|x|x|x|x|x|x| -|libde265/1.0.8-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libde265/1.0.11-GCC-11.3.0|x|x|x|x|x|x| +|libde265/1.0.8-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libdeflate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libdeflate.md index 54f9b413ceef..62030fb206e8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libdeflate.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libdeflate.md @@ -6,6 +6,10 @@ hide: libdeflate ========== + +Heavily optimized library for DEFLATE/zlib/gzip compression and decompression. + +https://github.com/ebiggers/libdeflate # Available modules @@ -14,14 +18,16 @@ The overview below shows which libdeflate installations are available per HPC-UG To start using libdeflate, load one of these modules using a `module load` command like: ```shell -module load libdeflate/1.15-GCCcore-12.2.0 +module load libdeflate/1.19-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libdeflate/1.15-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libdeflate/1.10-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libdeflate/1.8-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|libdeflate/1.7-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libdeflate/1.19-GCCcore-13.2.0|x|x|x|x|x|x| +|libdeflate/1.18-GCCcore-12.3.0|x|x|x|x|x|x| +|libdeflate/1.15-GCCcore-12.2.0|x|x|x|x|x|x| +|libdeflate/1.10-GCCcore-11.3.0|x|x|x|x|x|x| +|libdeflate/1.8-GCCcore-11.2.0|x|x|x|x|x|x| +|libdeflate/1.7-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libdrm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libdrm.md index 94f5e68b0cb5..5b41cfffd540 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libdrm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libdrm.md @@ -6,6 +6,10 @@ hide: libdrm ====== + +Direct Rendering Manager runtime library. + +https://dri.freedesktop.org # Available modules @@ -17,16 +21,16 @@ To start using libdrm, load one of these modules using a `module load` command l module load libdrm/2.4.115-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libdrm/2.4.115-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libdrm/2.4.114-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libdrm/2.4.110-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libdrm/2.4.107-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libdrm/2.4.106-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libdrm/2.4.102-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libdrm/2.4.100-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libdrm/2.4.99-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|libdrm/2.4.97-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libdrm/2.4.115-GCCcore-12.3.0|x|x|x|x|x|x| +|libdrm/2.4.114-GCCcore-12.2.0|x|x|x|x|x|x| +|libdrm/2.4.110-GCCcore-11.3.0|x|x|x|x|x|x| +|libdrm/2.4.107-GCCcore-11.2.0|x|x|x|x|x|x| +|libdrm/2.4.106-GCCcore-10.3.0|x|x|x|x|x|x| +|libdrm/2.4.102-GCCcore-10.2.0|x|x|x|x|x|x| +|libdrm/2.4.100-GCCcore-9.3.0|-|x|x|-|x|x| +|libdrm/2.4.99-GCCcore-8.3.0|x|x|x|-|x|x| +|libdrm/2.4.97-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libdrs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libdrs.md index dd677aa830a3..cc9c0480dd65 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libdrs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libdrs.md @@ -6,6 +6,10 @@ hide: libdrs ====== + +PCMDI's old DRS format implementation + +https://github.com/CDAT/libdrs/ # Available modules @@ -17,8 +21,8 @@ To start using libdrs, load one of these modules using a `module load` command l module load libdrs/3.1.2-foss-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libdrs/3.1.2-foss-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libdrs/3.1.2-foss-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libepoxy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libepoxy.md index 6bd9db1a67ba..a6a0f96fba6b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libepoxy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libepoxy.md @@ -6,6 +6,10 @@ hide: libepoxy ======== + +Epoxy is a library for handling OpenGL function pointer management for you + +https://github.com/anholt/libepoxy # Available modules @@ -14,16 +18,17 @@ The overview below shows which libepoxy installations are available per HPC-UGen To start using libepoxy, load one of these modules using a `module load` command like: ```shell -module load libepoxy/1.5.10-GCCcore-12.2.0 +module load libepoxy/1.5.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libepoxy/1.5.10-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libepoxy/1.5.10-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libepoxy/1.5.8-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libepoxy/1.5.8-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|libepoxy/1.5.4-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|libepoxy/1.5.4-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libepoxy/1.5.10-GCCcore-12.3.0|x|x|x|x|x|x| +|libepoxy/1.5.10-GCCcore-12.2.0|x|x|x|x|x|x| +|libepoxy/1.5.10-GCCcore-11.3.0|x|x|x|x|x|x| +|libepoxy/1.5.8-GCCcore-11.2.0|x|x|x|x|x|x| +|libepoxy/1.5.8-GCCcore-10.3.0|x|x|x|-|x|x| +|libepoxy/1.5.4-GCCcore-10.2.0|x|x|x|x|x|x| +|libepoxy/1.5.4-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libev.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libev.md index 39b396764fb8..42703ee40635 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libev.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libev.md @@ -6,6 +6,10 @@ hide: libev ===== + +A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and bugs. It is used in GNU Virtual Private Ethernet, rxvt-unicode, auditd, the Deliantra MORPG Server and Client, and many other programs. + +http://software.schmorp.de/pkg/libev.html # Available modules @@ -17,8 +21,8 @@ To start using libev, load one of these modules using a `module load` command li module load libev/4.33-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libev/4.33-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libev/4.33-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libevent.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libevent.md index 8c72b5e07623..831d6f90387d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libevent.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libevent.md @@ -6,6 +6,10 @@ hide: libevent ======== + +The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts. + +https://libevent.org # Available modules @@ -14,19 +18,20 @@ The overview below shows which libevent installations are available per HPC-UGen To start using libevent, load one of these modules using a `module load` command like: ```shell -module load libevent/2.1.12-GCCcore-12.3.0 +module load libevent/2.1.12-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libevent/2.1.12-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libevent/2.1.12-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libevent/2.1.12-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libevent/2.1.12-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libevent/2.1.12-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libevent/2.1.12-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libevent/2.1.12|-|x|x|-|x|x|x|x| -|libevent/2.1.11-GCCcore-9.3.0|-|x|x|x|x|x|x|x| -|libevent/2.1.11-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libevent/2.1.12-GCCcore-13.2.0|x|x|x|x|x|x| +|libevent/2.1.12-GCCcore-12.3.0|x|x|x|x|x|x| +|libevent/2.1.12-GCCcore-12.2.0|x|x|x|x|x|x| +|libevent/2.1.12-GCCcore-11.3.0|x|x|x|x|x|x| +|libevent/2.1.12-GCCcore-11.2.0|x|x|x|x|x|x| +|libevent/2.1.12-GCCcore-10.3.0|x|x|x|x|x|x| +|libevent/2.1.12-GCCcore-10.2.0|x|x|x|x|x|x| +|libevent/2.1.12|-|x|x|-|x|x| +|libevent/2.1.11-GCCcore-9.3.0|x|x|x|x|x|x| +|libevent/2.1.11-GCCcore-8.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libfabric.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libfabric.md index dcb03dab79e0..2064c30b419d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libfabric.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libfabric.md @@ -6,6 +6,10 @@ hide: libfabric ========= + +Libfabric is a core component of OFI. It is the library that defines and exportsthe user-space API of OFI, and is typically the only software that applicationsdeal with directly. It works in conjunction with provider libraries, which areoften integrated directly into libfabric. + +https://ofiwg.github.io/libfabric/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which libfabric installations are available per HPC-UGe To start using libfabric, load one of these modules using a `module load` command like: ```shell -module load libfabric/1.18.0-GCCcore-12.3.0 +module load libfabric/1.19.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libfabric/1.18.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libfabric/1.16.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libfabric/1.15.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libfabric/1.13.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libfabric/1.12.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libfabric/1.11.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libfabric/1.11.0-GCCcore-9.3.0|-|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libfabric/1.19.0-GCCcore-13.2.0|x|x|x|x|x|x| +|libfabric/1.18.0-GCCcore-12.3.0|x|x|x|x|x|x| +|libfabric/1.16.1-GCCcore-12.2.0|x|x|x|x|x|x| +|libfabric/1.15.1-GCCcore-11.3.0|x|x|x|x|x|x| +|libfabric/1.13.2-GCCcore-11.2.0|x|x|x|x|x|x| +|libfabric/1.12.1-GCCcore-10.3.0|x|x|x|x|x|x| +|libfabric/1.11.0-GCCcore-10.2.0|x|x|x|x|x|x| +|libfabric/1.11.0-GCCcore-9.3.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libffi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libffi.md index fbee4443e576..7bad81dc63f6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libffi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libffi.md @@ -6,6 +6,10 @@ hide: libffi ====== + +The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time. + +http://sourceware.org/libffi/ # Available modules @@ -14,19 +18,20 @@ The overview below shows which libffi installations are available per HPC-UGent To start using libffi, load one of these modules using a `module load` command like: ```shell -module load libffi/3.4.4-GCCcore-12.3.0 +module load libffi/3.4.4-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libffi/3.4.4-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libffi/3.4.4-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libffi/3.4.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libffi/3.4.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libffi/3.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libffi/3.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libffi/3.3-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|libffi/3.2.1-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|libffi/3.2.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libffi/3.4.4-GCCcore-13.2.0|x|x|x|x|x|x| +|libffi/3.4.4-GCCcore-12.3.0|x|x|x|x|x|x| +|libffi/3.4.4-GCCcore-12.2.0|x|x|x|x|x|x| +|libffi/3.4.2-GCCcore-11.3.0|x|x|x|x|x|x| +|libffi/3.4.2-GCCcore-11.2.0|x|x|x|x|x|x| +|libffi/3.3-GCCcore-10.3.0|x|x|x|x|x|x| +|libffi/3.3-GCCcore-10.2.0|x|x|x|x|x|x| +|libffi/3.3-GCCcore-9.3.0|x|x|x|x|x|x| +|libffi/3.2.1-GCCcore-8.3.0|x|x|x|x|x|x| +|libffi/3.2.1-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgcrypt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgcrypt.md index ca572d5e6ae0..575b90a48e95 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgcrypt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgcrypt.md @@ -6,6 +6,10 @@ hide: libgcrypt ========= + +Libgcrypt is a general purpose cryptographic library originally based on code from GnuPG + +https://gnupg.org/related_software/libgcrypt/index.html # Available modules @@ -17,9 +21,9 @@ To start using libgcrypt, load one of these modules using a `module load` comman module load libgcrypt/1.9.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libgcrypt/1.9.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libgcrypt/1.9.2-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libgcrypt/1.9.3-GCCcore-11.2.0|x|x|x|x|x|x| +|libgcrypt/1.9.2-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgd.md index 1a7822304aff..f25c921b85db 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgd.md @@ -6,6 +6,10 @@ hide: libgd ===== + +GD is an open source code library for the dynamic creation of images by programmers. + +https://libgd.github.io/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which libgd installations are available per HPC-UGent T To start using libgd, load one of these modules using a `module load` command like: ```shell -module load libgd/2.3.3-GCCcore-12.2.0 +module load libgd/2.3.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libgd/2.3.3-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libgd/2.3.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libgd/2.3.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libgd/2.3.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libgd/2.3.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libgd/2.3.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libgd/2.2.5-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libgd/2.3.3-GCCcore-12.3.0|x|x|x|x|x|x| +|libgd/2.3.3-GCCcore-12.2.0|x|x|x|x|x|x| +|libgd/2.3.3-GCCcore-11.3.0|x|x|x|x|x|x| +|libgd/2.3.3-GCCcore-11.2.0|x|x|x|x|x|x| +|libgd/2.3.1-GCCcore-10.3.0|x|x|x|x|x|x| +|libgd/2.3.0-GCCcore-10.2.0|x|x|x|x|x|x| +|libgd/2.3.0-GCCcore-9.3.0|-|x|x|-|x|x| +|libgd/2.2.5-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgeotiff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgeotiff.md index f93f411f9ce4..a184cf8ce80b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgeotiff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgeotiff.md @@ -6,6 +6,10 @@ hide: libgeotiff ========== + +Library for reading and writing coordinate system information from/to GeoTIFF files + +https://directory.fsf.org/wiki/Libgeotiff # Available modules @@ -14,17 +18,18 @@ The overview below shows which libgeotiff installations are available per HPC-UG To start using libgeotiff, load one of these modules using a `module load` command like: ```shell -module load libgeotiff/1.7.1-GCCcore-12.2.0 +module load libgeotiff/1.7.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libgeotiff/1.7.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libgeotiff/1.7.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libgeotiff/1.7.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libgeotiff/1.6.0-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|libgeotiff/1.6.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|libgeotiff/1.5.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libgeotiff/1.5.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libgeotiff/1.7.1-GCCcore-12.3.0|x|x|x|x|x|x| +|libgeotiff/1.7.1-GCCcore-12.2.0|x|x|x|x|x|x| +|libgeotiff/1.7.1-GCCcore-11.3.0|x|x|x|x|x|x| +|libgeotiff/1.7.0-GCCcore-11.2.0|x|x|x|x|x|x| +|libgeotiff/1.6.0-GCCcore-10.3.0|x|x|x|x|x|x| +|libgeotiff/1.6.0-GCCcore-10.2.0|-|x|x|x|x|x| +|libgeotiff/1.5.1-GCCcore-9.3.0|-|x|x|-|x|x| +|libgeotiff/1.5.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgit2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgit2.md index dd23c7a529f5..19e367623c5b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgit2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgit2.md @@ -6,6 +6,10 @@ hide: libgit2 ======= + +libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrantlinkable library with a solid API, allowing you to write native speed custom Git applications in any languagewhich supports C bindings. + +https://libgit2.org/ # Available modules @@ -14,14 +18,15 @@ The overview below shows which libgit2 installations are available per HPC-UGent To start using libgit2, load one of these modules using a `module load` command like: ```shell -module load libgit2/1.5.0-GCCcore-12.2.0 +module load libgit2/1.7.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libgit2/1.5.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libgit2/1.4.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libgit2/1.1.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libgit2/1.1.0-GCCcore-10.3.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libgit2/1.7.1-GCCcore-12.3.0|x|x|x|x|x|x| +|libgit2/1.5.0-GCCcore-12.2.0|x|x|x|x|x|x| +|libgit2/1.4.3-GCCcore-11.3.0|x|x|x|x|x|x| +|libgit2/1.1.1-GCCcore-11.2.0|x|x|x|x|x|x| +|libgit2/1.1.0-GCCcore-10.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libglvnd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libglvnd.md index 8f88baaead00..4f23cb7ee57e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libglvnd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libglvnd.md @@ -6,6 +6,10 @@ hide: libglvnd ======== + +libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. + +https://github.com/NVIDIA/libglvnd # Available modules @@ -17,16 +21,16 @@ To start using libglvnd, load one of these modules using a `module load` command module load libglvnd/1.6.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libglvnd/1.6.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libglvnd/1.6.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libglvnd/1.4.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libglvnd/1.3.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libglvnd/1.3.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libglvnd/1.3.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libglvnd/1.2.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libglvnd/1.2.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| -|libglvnd/1.2.0-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libglvnd/1.6.0-GCCcore-12.3.0|x|x|x|x|x|x| +|libglvnd/1.6.0-GCCcore-12.2.0|x|x|x|x|x|x| +|libglvnd/1.4.0-GCCcore-11.3.0|x|x|x|x|x|x| +|libglvnd/1.3.3-GCCcore-11.2.0|x|x|x|x|x|x| +|libglvnd/1.3.3-GCCcore-10.3.0|x|x|x|x|x|x| +|libglvnd/1.3.2-GCCcore-10.2.0|x|x|x|x|x|x| +|libglvnd/1.2.0-GCCcore-9.3.0|-|x|x|-|x|x| +|libglvnd/1.2.0-GCCcore-8.3.0|-|x|x|-|x|x| +|libglvnd/1.2.0-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgpg-error.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgpg-error.md index 2cda6080610a..0fd2af562d46 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgpg-error.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgpg-error.md @@ -6,6 +6,10 @@ hide: libgpg-error ============ + +Libgpg-error is a small library that defines common error values for all GnuPG components. + +https://gnupg.org/related_software/libgpg-error/index.html # Available modules @@ -17,9 +21,9 @@ To start using libgpg-error, load one of these modules using a `module load` com module load libgpg-error/1.42-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libgpg-error/1.42-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libgpg-error/1.42-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libgpg-error/1.42-GCCcore-11.2.0|x|x|x|x|x|x| +|libgpg-error/1.42-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libgpuarray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libgpuarray.md index 3265e0fcf4e3..99f92f462e8c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libgpuarray.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libgpuarray.md @@ -6,6 +6,10 @@ hide: libgpuarray =========== + +Library to manipulate tensors on the GPU. + +http://deeplearning.net/software/libgpuarray/ # Available modules @@ -17,8 +21,15 @@ To start using libgpuarray, load one of these modules using a `module load` comm module load libgpuarray/0.7.6-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libgpuarray/0.7.6-fosscuda-2020b|x|-|-|-|x|-| + + +### libgpuarray/0.7.6-fosscuda-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libgpuarray/0.7.6-fosscuda-2020b|x|-|-|-|x|-|-|-| +libgpuarray-0.7.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libharu.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libharu.md index e1e7e7667852..55f92c56c232 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libharu.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libharu.md @@ -6,6 +6,10 @@ hide: libharu ======= + +libHaru is a free, cross platform, open source library forgenerating PDF files. + +https://github.com/libharu/libharu/ # Available modules @@ -17,10 +21,10 @@ To start using libharu, load one of these modules using a `module load` command module load libharu/2.3.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libharu/2.3.0-foss-2021b|x|x|x|-|x|x|x|x| -|libharu/2.3.0-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|libharu/2.3.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libharu/2.3.0-foss-2021b|x|x|x|-|x|x| +|libharu/2.3.0-GCCcore-10.3.0|-|x|x|-|x|x| +|libharu/2.3.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libheif.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libheif.md index 25162fd9b926..1ea2812d0d54 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libheif.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libheif.md @@ -6,6 +6,10 @@ hide: libheif ======= + +libheif is an HEIF and AVIF file format decoder and encoder + +https://github.com/strukturag/libheif # Available modules @@ -17,9 +21,9 @@ To start using libheif, load one of these modules using a `module load` command module load libheif/1.16.2-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libheif/1.16.2-GCC-11.3.0|x|x|x|x|x|x|x|x| -|libheif/1.12.0-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libheif/1.16.2-GCC-11.3.0|x|x|x|x|x|x| +|libheif/1.12.0-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libiconv.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libiconv.md index 5ce4638e8d93..865347bed98a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libiconv.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libiconv.md @@ -6,6 +6,10 @@ hide: libiconv ======== + +Libiconv converts from one character encoding to another through Unicode conversion + +https://www.gnu.org/software/libiconv # Available modules @@ -14,18 +18,19 @@ The overview below shows which libiconv installations are available per HPC-UGen To start using libiconv, load one of these modules using a `module load` command like: ```shell -module load libiconv/1.17-GCCcore-12.3.0 +module load libiconv/1.17-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libiconv/1.17-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libiconv/1.17-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libiconv/1.17-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libiconv/1.16-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libiconv/1.16-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libiconv/1.16-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libiconv/1.16-GCCcore-9.3.0|-|x|x|x|x|x|x|x| -|libiconv/1.16-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libiconv/1.17-GCCcore-13.2.0|x|x|x|x|x|x| +|libiconv/1.17-GCCcore-12.3.0|x|x|x|x|x|x| +|libiconv/1.17-GCCcore-12.2.0|x|x|x|x|x|x| +|libiconv/1.17-GCCcore-11.3.0|x|x|x|x|x|x| +|libiconv/1.16-GCCcore-11.2.0|x|x|x|x|x|x| +|libiconv/1.16-GCCcore-10.3.0|x|x|x|x|x|x| +|libiconv/1.16-GCCcore-10.2.0|x|x|x|x|x|x| +|libiconv/1.16-GCCcore-9.3.0|x|x|x|x|x|x| +|libiconv/1.16-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libidn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libidn.md index 3a53e99bd7f1..88f82d706687 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libidn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libidn.md @@ -6,6 +6,10 @@ hide: libidn ====== + +GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications.Libidn's purpose is to encode and decode internationalized domain names. + +http://www.gnu.org/software/libidn # Available modules @@ -17,10 +21,10 @@ To start using libidn, load one of these modules using a `module load` command l module load libidn/1.38-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libidn/1.38-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libidn/1.36-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|libidn/1.35-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libidn/1.38-GCCcore-11.2.0|x|x|x|x|x|x| +|libidn/1.36-GCCcore-10.3.0|-|x|x|-|x|x| +|libidn/1.35-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libidn2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libidn2.md index f76130f2a502..a12ba31fa177 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libidn2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libidn2.md @@ -6,6 +6,10 @@ hide: libidn2 ======= + +GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications.Libidn's purpose is to encode and decode internationalized domain names. + +https://www.gnu.org/software/libidn # Available modules @@ -17,11 +21,11 @@ To start using libidn2, load one of these modules using a `module load` command module load libidn2/2.3.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libidn2/2.3.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libidn2/2.3.0-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|libidn2/2.3.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libidn2/2.3.0-GCCcore-9.3.0|-|-|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libidn2/2.3.2-GCCcore-11.2.0|x|x|x|x|x|x| +|libidn2/2.3.0-GCCcore-10.3.0|-|x|x|x|x|x| +|libidn2/2.3.0-GCCcore-10.2.0|x|x|x|x|x|x| +|libidn2/2.3.0-GCCcore-9.3.0|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libjpeg-turbo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libjpeg-turbo.md index 59696283b2d0..6cd80086e05d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libjpeg-turbo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libjpeg-turbo.md @@ -6,6 +6,10 @@ hide: libjpeg-turbo ============= + +libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. + +https://sourceforge.net/projects/libjpeg-turbo/ # Available modules @@ -14,18 +18,20 @@ The overview below shows which libjpeg-turbo installations are available per HPC To start using libjpeg-turbo, load one of these modules using a `module load` command like: ```shell -module load libjpeg-turbo/2.1.4-GCCcore-12.2.0 +module load libjpeg-turbo/3.0.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libjpeg-turbo/2.1.4-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libjpeg-turbo/2.1.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libjpeg-turbo/2.0.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libjpeg-turbo/2.0.6-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libjpeg-turbo/2.0.5-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libjpeg-turbo/2.0.4-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libjpeg-turbo/2.0.3-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|libjpeg-turbo/2.0.2-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libjpeg-turbo/3.0.1-GCCcore-13.2.0|x|x|x|x|x|x| +|libjpeg-turbo/2.1.5.1-GCCcore-12.3.0|x|x|x|x|x|x| +|libjpeg-turbo/2.1.4-GCCcore-12.2.0|x|x|x|x|x|x| +|libjpeg-turbo/2.1.3-GCCcore-11.3.0|x|x|x|x|x|x| +|libjpeg-turbo/2.0.6-GCCcore-11.2.0|x|x|x|x|x|x| +|libjpeg-turbo/2.0.6-GCCcore-10.3.0|x|x|x|x|x|x| +|libjpeg-turbo/2.0.5-GCCcore-10.2.0|x|x|x|x|x|x| +|libjpeg-turbo/2.0.4-GCCcore-9.3.0|-|x|x|-|x|x| +|libjpeg-turbo/2.0.3-GCCcore-8.3.0|x|x|x|-|x|x| +|libjpeg-turbo/2.0.2-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libjxl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libjxl.md index a85a3ba0b742..89a6acdc212f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libjxl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libjxl.md @@ -6,6 +6,10 @@ hide: libjxl ====== + +JPEG XL image format reference implementation + +https://github.com/libjxl/libjxl # Available modules @@ -17,8 +21,8 @@ To start using libjxl, load one of these modules using a `module load` command l module load libjxl/0.8.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libjxl/0.8.1-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libjxl/0.8.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libleidenalg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libleidenalg.md new file mode 100644 index 000000000000..df2e573c7792 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libleidenalg.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +libleidenalg +============ + + +Implements the Leiden algorithm in C++ + +https://github.com/vtraag/libleidenalg +# Available modules + + +The overview below shows which libleidenalg installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using libleidenalg, load one of these modules using a `module load` command like: + +```shell +module load libleidenalg/0.11.1-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libleidenalg/0.11.1-foss-2023a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libmad.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libmad.md index 0f849f42a63b..b6610314a71c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libmad.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libmad.md @@ -6,6 +6,10 @@ hide: libmad ====== + +MAD is a high-quality MPEG audio decoder. + +https://www.underbit.com/products/mad/ # Available modules @@ -17,8 +21,8 @@ To start using libmad, load one of these modules using a `module load` command l module load libmad/0.15.1b-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libmad/0.15.1b-GCCcore-11.3.0|x|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libmad/0.15.1b-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libmatheval.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libmatheval.md index 225eba559ad3..e2a1d220d02c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libmatheval.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libmatheval.md @@ -6,6 +6,10 @@ hide: libmatheval =========== + +GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text. + +https://www.gnu.org/software/libmatheval/ # Available modules @@ -17,9 +21,9 @@ To start using libmatheval, load one of these modules using a `module load` comm module load libmatheval/1.1.11-GCCcore-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libmatheval/1.1.11-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libmatheval/1.1.11-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libmatheval/1.1.11-GCCcore-9.3.0|-|x|x|-|x|x| +|libmatheval/1.1.11-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libmaus2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libmaus2.md index 855534722b78..49ff53e9eb0e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libmaus2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libmaus2.md @@ -6,6 +6,10 @@ hide: libmaus2 ======== + +libmaus2 is a collection of data structures and algorithms. + +https://github.com/gt1/libmaus2 # Available modules @@ -14,11 +18,12 @@ The overview below shows which libmaus2 installations are available per HPC-UGen To start using libmaus2, load one of these modules using a `module load` command like: ```shell -module load libmaus2/2.0.499-GCC-11.3.0 +module load libmaus2/2.0.813-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libmaus2/2.0.499-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libmaus2/2.0.813-GCC-12.3.0|x|x|x|x|x|x| +|libmaus2/2.0.499-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libmypaint.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libmypaint.md index 89249f62e185..9a15a9cad4b8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libmypaint.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libmypaint.md @@ -6,6 +6,10 @@ hide: libmypaint ========== + +libmypaint, a.k.a. "brushlib", is a library for making brushstrokes which is used by MyPaint and other projects + +https://github.com/mypaint/libmypaint # Available modules @@ -17,8 +21,8 @@ To start using libmypaint, load one of these modules using a `module load` comma module load libmypaint/1.6.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libmypaint/1.6.1-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libmypaint/1.6.1-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libobjcryst.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libobjcryst.md index 1f1e481036ae..a567e16eb6f0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libobjcryst.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libobjcryst.md @@ -6,6 +6,10 @@ hide: libobjcryst =========== + +ObjCryst++ is Object-Oriented Crystallographic Library for C++ + +https://github.com/diffpy/libobjcryst # Available modules @@ -17,10 +21,10 @@ To start using libobjcryst, load one of these modules using a `module load` comm module load libobjcryst/2021.1.2-intel-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libobjcryst/2021.1.2-intel-2020a|-|-|-|-|-|x|-|x| -|libobjcryst/2021.1.2-foss-2021b|x|x|x|-|x|x|x|x| -|libobjcryst/2017.2.3-intel-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libobjcryst/2021.1.2-intel-2020a|-|-|-|-|-|x| +|libobjcryst/2021.1.2-foss-2021b|x|x|x|-|x|x| +|libobjcryst/2017.2.3-intel-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libogg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libogg.md index 216f54cf1769..d59b5ce72c2a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libogg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libogg.md @@ -6,6 +6,10 @@ hide: libogg ====== + +Ogg is a multimedia container format, and the native file and stream format for the Xiph.orgmultimedia codecs. + +https://xiph.org/ogg/ # Available modules @@ -14,15 +18,16 @@ The overview below shows which libogg installations are available per HPC-UGent To start using libogg, load one of these modules using a `module load` command like: ```shell -module load libogg/1.3.5-GCCcore-12.2.0 +module load libogg/1.3.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libogg/1.3.5-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libogg/1.3.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libogg/1.3.5-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libogg/1.3.4-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|libogg/1.3.4-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libogg/1.3.5-GCCcore-12.3.0|x|x|x|x|x|x| +|libogg/1.3.5-GCCcore-12.2.0|x|x|x|x|x|x| +|libogg/1.3.5-GCCcore-11.3.0|x|x|x|x|x|x| +|libogg/1.3.5-GCCcore-11.2.0|x|x|x|x|x|x| +|libogg/1.3.4-GCCcore-10.3.0|x|x|x|x|x|x| +|libogg/1.3.4-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libopus.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libopus.md index 7f8f42723c0e..cde4588091e8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libopus.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libopus.md @@ -6,6 +6,10 @@ hide: libopus ======= + +Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec. + +https://www.opus-codec.org/ # Available modules @@ -14,12 +18,13 @@ The overview below shows which libopus installations are available per HPC-UGent To start using libopus, load one of these modules using a `module load` command like: ```shell -module load libopus/1.3.1-GCCcore-12.2.0 +module load libopus/1.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libopus/1.3.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libopus/1.3.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libopus/1.4-GCCcore-12.3.0|x|x|x|x|x|x| +|libopus/1.3.1-GCCcore-12.2.0|x|x|x|x|x|x| +|libopus/1.3.1-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libpciaccess.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libpciaccess.md index 279dc73dac8c..ae9b1fa2fc96 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libpciaccess.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libpciaccess.md @@ -6,6 +6,10 @@ hide: libpciaccess ============ + +Generic PCI access library. + +https://cgit.freedesktop.org/xorg/lib/libpciaccess/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which libpciaccess installations are available per HPC- To start using libpciaccess, load one of these modules using a `module load` command like: ```shell -module load libpciaccess/0.17-GCCcore-12.3.0 +module load libpciaccess/0.17-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libpciaccess/0.17-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libpciaccess/0.17-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libpciaccess/0.16-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libpciaccess/0.16-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libpciaccess/0.16-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libpciaccess/0.16-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libpciaccess/0.16-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|libpciaccess/0.14-GCCcore-8.3.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libpciaccess/0.17-GCCcore-13.2.0|x|x|x|x|x|x| +|libpciaccess/0.17-GCCcore-12.3.0|x|x|x|x|x|x| +|libpciaccess/0.17-GCCcore-12.2.0|x|x|x|x|x|x| +|libpciaccess/0.16-GCCcore-11.3.0|x|x|x|x|x|x| +|libpciaccess/0.16-GCCcore-11.2.0|x|x|x|x|x|x| +|libpciaccess/0.16-GCCcore-10.3.0|x|x|x|x|x|x| +|libpciaccess/0.16-GCCcore-10.2.0|x|x|x|x|x|x| +|libpciaccess/0.16-GCCcore-9.3.0|x|x|x|x|x|x| +|libpciaccess/0.14-GCCcore-8.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libpng.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libpng.md index 1f8e96d7a0cb..1c571d21c1c9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libpng.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libpng.md @@ -6,6 +6,10 @@ hide: libpng ====== + +libpng is the official PNG reference library + +http://www.libpng.org/pub/png/libpng.html # Available modules @@ -14,20 +18,21 @@ The overview below shows which libpng installations are available per HPC-UGent To start using libpng, load one of these modules using a `module load` command like: ```shell -module load libpng/1.6.39-GCCcore-12.3.0 +module load libpng/1.6.40-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libpng/1.6.39-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libpng/1.6.38-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libpng/1.6.37-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libpng/1.6.37-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libpng/1.6.37-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libpng/1.6.37-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libpng/1.6.37-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|libpng/1.6.37-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|libpng/1.6.36-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|libpng/1.2.58|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libpng/1.6.40-GCCcore-13.2.0|x|x|x|x|x|x| +|libpng/1.6.39-GCCcore-12.3.0|x|x|x|x|x|x| +|libpng/1.6.38-GCCcore-12.2.0|x|x|x|x|x|x| +|libpng/1.6.37-GCCcore-11.3.0|x|x|x|x|x|x| +|libpng/1.6.37-GCCcore-11.2.0|x|x|x|x|x|x| +|libpng/1.6.37-GCCcore-10.3.0|x|x|x|x|x|x| +|libpng/1.6.37-GCCcore-10.2.0|x|x|x|x|x|x| +|libpng/1.6.37-GCCcore-9.3.0|x|x|x|x|x|x| +|libpng/1.6.37-GCCcore-8.3.0|x|x|x|-|x|x| +|libpng/1.6.36-GCCcore-8.2.0|-|x|-|-|-|-| +|libpng/1.2.58|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libpsl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libpsl.md index 6d6e8ab3a581..2b51198f935f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libpsl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libpsl.md @@ -6,6 +6,10 @@ hide: libpsl ====== + +C library for the Public Suffix List + +https://rockdaboot.github.io/libpsl # Available modules @@ -17,9 +21,9 @@ To start using libpsl, load one of these modules using a `module load` command l module load libpsl/0.21.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libpsl/0.21.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libpsl/0.21.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libpsl/0.21.1-GCCcore-11.2.0|x|x|x|x|x|x| +|libpsl/0.21.1-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libreadline.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libreadline.md index 9800159d7dc8..62f0bdf61c0a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libreadline.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libreadline.md @@ -6,6 +6,10 @@ hide: libreadline =========== + +The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands. + +http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html # Available modules @@ -14,19 +18,20 @@ The overview below shows which libreadline installations are available per HPC-U To start using libreadline, load one of these modules using a `module load` command like: ```shell -module load libreadline/8.2-GCCcore-12.3.0 +module load libreadline/8.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libreadline/8.2-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libreadline/8.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libreadline/8.1.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libreadline/8.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libreadline/8.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libreadline/8.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libreadline/8.0-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|libreadline/8.0-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|libreadline/8.0-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libreadline/8.2-GCCcore-13.2.0|x|x|x|x|x|x| +|libreadline/8.2-GCCcore-12.3.0|x|x|x|x|x|x| +|libreadline/8.2-GCCcore-12.2.0|x|x|x|x|x|x| +|libreadline/8.1.2-GCCcore-11.3.0|x|x|x|x|x|x| +|libreadline/8.1-GCCcore-11.2.0|x|x|x|x|x|x| +|libreadline/8.1-GCCcore-10.3.0|x|x|x|x|x|x| +|libreadline/8.0-GCCcore-10.2.0|x|x|x|x|x|x| +|libreadline/8.0-GCCcore-9.3.0|x|x|x|x|x|x| +|libreadline/8.0-GCCcore-8.3.0|x|x|x|x|x|x| +|libreadline/8.0-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/librosa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/librosa.md index 31122957e2b2..bd13b77192eb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/librosa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/librosa.md @@ -6,6 +6,10 @@ hide: librosa ======= + +Python module for audio and music processing + +https://librosa.github.io # Available modules @@ -17,8 +21,15 @@ To start using librosa, load one of these modules using a `module load` command module load librosa/0.7.2-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|librosa/0.7.2-foss-2019b-Python-3.7.4|-|-|x|-|x|x| + + +### librosa/0.7.2-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|librosa/0.7.2-foss-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| +audioread-2.1.8, librosa-0.7.2, resampy-0.2.2, SoundFile-0.10.3.post1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/librsvg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/librsvg.md index 3929cce702ee..201223f28941 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/librsvg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/librsvg.md @@ -6,6 +6,10 @@ hide: librsvg ======= + +Librsvg is a library to render SVG files using cairo. + +https://wiki.gnome.org/Projects/LibRsvg # Available modules @@ -17,8 +21,8 @@ To start using librsvg, load one of these modules using a `module load` command module load librsvg/2.51.2-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|librsvg/2.51.2-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|librsvg/2.51.2-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/librttopo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/librttopo.md index 30848115a0df..2a5bb27c402a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/librttopo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/librttopo.md @@ -6,6 +6,10 @@ hide: librttopo ========= + +The RT Topology Library exposes an API to create andmanage standard (ISO 13249 aka SQL/MM) topologies using user-provideddata stores. + +https://git.osgeo.org/gitea/rttopo/librttopo # Available modules @@ -17,8 +21,8 @@ To start using librttopo, load one of these modules using a `module load` comman module load librttopo/1.1.0-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|librttopo/1.1.0-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|librttopo/1.1.0-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libsigc++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libsigc++.md index ebb7f696e53c..715a1e32c443 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libsigc++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libsigc++.md @@ -6,6 +6,10 @@ hide: libsigc++ ========= + +The libsigc++ package implements a typesafe callback system for standard C++. + +https://libsigcplusplus.github.io/libsigcplusplus/ # Available modules @@ -17,9 +21,9 @@ To start using libsigc++, load one of these modules using a `module load` comman module load libsigc++/2.10.8-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libsigc++/2.10.8-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|libsigc++/2.10.2-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libsigc++/2.10.8-GCCcore-10.3.0|-|x|x|-|x|x| +|libsigc++/2.10.2-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libsndfile.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libsndfile.md index 2fbc82e5ee5b..3519899805d2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libsndfile.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libsndfile.md @@ -6,6 +6,10 @@ hide: libsndfile ========== + +Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface. + +http://www.mega-nerd.com/libsndfile # Available modules @@ -14,17 +18,18 @@ The overview below shows which libsndfile installations are available per HPC-UG To start using libsndfile, load one of these modules using a `module load` command like: ```shell -module load libsndfile/1.2.0-GCCcore-12.2.0 +module load libsndfile/1.2.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libsndfile/1.2.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libsndfile/1.1.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libsndfile/1.0.31-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libsndfile/1.0.31-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|libsndfile/1.0.28-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libsndfile/1.0.28-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libsndfile/1.0.28-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libsndfile/1.2.2-GCCcore-12.3.0|x|x|x|x|x|x| +|libsndfile/1.2.0-GCCcore-12.2.0|x|x|x|x|x|x| +|libsndfile/1.1.0-GCCcore-11.3.0|x|x|x|x|x|x| +|libsndfile/1.0.31-GCCcore-11.2.0|x|x|x|x|x|x| +|libsndfile/1.0.31-GCCcore-10.3.0|x|x|x|x|x|x| +|libsndfile/1.0.28-GCCcore-10.2.0|x|x|x|x|x|x| +|libsndfile/1.0.28-GCCcore-9.3.0|-|x|x|-|x|x| +|libsndfile/1.0.28-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libsodium.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libsodium.md index 6be8e99ce2f9..dcd1d3de018f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libsodium.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libsodium.md @@ -6,6 +6,10 @@ hide: libsodium ========= + +Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. + +https://doc.libsodium.org/ # Available modules @@ -14,16 +18,18 @@ The overview below shows which libsodium installations are available per HPC-UGe To start using libsodium, load one of these modules using a `module load` command like: ```shell -module load libsodium/1.0.18-GCCcore-11.3.0 +module load libsodium/1.0.18-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libsodium/1.0.18-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libsodium/1.0.18-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libsodium/1.0.18-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libsodium/1.0.18-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libsodium/1.0.18-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|libsodium/1.0.18-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libsodium/1.0.18-GCCcore-12.3.0|x|x|x|x|x|x| +|libsodium/1.0.18-GCCcore-12.2.0|x|x|x|x|x|x| +|libsodium/1.0.18-GCCcore-11.3.0|x|x|x|x|x|x| +|libsodium/1.0.18-GCCcore-11.2.0|x|x|x|x|x|x| +|libsodium/1.0.18-GCCcore-10.3.0|x|x|x|x|x|x| +|libsodium/1.0.18-GCCcore-10.2.0|x|x|x|x|x|x| +|libsodium/1.0.18-GCCcore-9.3.0|x|x|x|x|x|x| +|libsodium/1.0.18-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialindex.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialindex.md index 836813b1929b..079b795b4fa3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialindex.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialindex.md @@ -6,6 +6,10 @@ hide: libspatialindex =============== + +C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API + +https://libspatialindex.org # Available modules @@ -17,8 +21,8 @@ To start using libspatialindex, load one of these modules using a `module load` module load libspatialindex/1.9.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libspatialindex/1.9.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libspatialindex/1.9.3-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialite.md index 859f00e6a925..37b27b70ea92 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libspatialite.md @@ -6,6 +6,10 @@ hide: libspatialite ============= + +SpatiaLite is an open source library intended to extend the SQLite core to support fully fledged Spatial SQL capabilities. + +https://www.gaia-gis.it/fossil/libspatialite/home # Available modules @@ -17,8 +21,8 @@ To start using libspatialite, load one of these modules using a `module load` co module load libspatialite/5.0.1-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libspatialite/5.0.1-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libspatialite/5.0.1-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libtasn1.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libtasn1.md index c6178e258499..35b69b926e95 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libtasn1.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libtasn1.md @@ -6,6 +6,10 @@ hide: libtasn1 ======== + +Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package. + +https://www.gnu.org/software/libtasn1/ # Available modules @@ -17,9 +21,9 @@ To start using libtasn1, load one of these modules using a `module load` command module load libtasn1/4.18.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libtasn1/4.18.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libtasn1/4.17.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libtasn1/4.18.0-GCCcore-11.2.0|x|x|x|x|x|x| +|libtasn1/4.17.0-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libtirpc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libtirpc.md index 71d9146ad582..0a80c1253dd4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libtirpc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libtirpc.md @@ -6,6 +6,10 @@ hide: libtirpc ======== + +Libtirpc is a port of Suns Transport-Independent RPC library to Linux. + +https://sourceforge.net/projects/libtirpc/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which libtirpc installations are available per HPC-UGen To start using libtirpc, load one of these modules using a `module load` command like: ```shell -module load libtirpc/1.3.3-GCCcore-12.2.0 +module load libtirpc/1.3.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libtirpc/1.3.3-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libtirpc/1.3.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libtirpc/1.3.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libtirpc/1.3.2-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|libtirpc/1.3.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|libtirpc/1.2.6-GCCcore-9.3.0|-|-|x|-|x|x|x|x| -|libtirpc/1.2.6-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libtirpc/1.3.3-GCCcore-12.3.0|x|x|x|x|x|x| +|libtirpc/1.3.3-GCCcore-12.2.0|x|x|x|x|x|x| +|libtirpc/1.3.2-GCCcore-11.3.0|x|x|x|x|x|x| +|libtirpc/1.3.2-GCCcore-11.2.0|x|x|x|x|x|x| +|libtirpc/1.3.2-GCCcore-10.3.0|x|x|x|x|x|x| +|libtirpc/1.3.1-GCCcore-10.2.0|-|x|x|x|x|x| +|libtirpc/1.2.6-GCCcore-9.3.0|-|-|x|-|x|x| +|libtirpc/1.2.6-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libtool.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libtool.md index 11d79edbfb55..f03e23d8080f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libtool.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libtool.md @@ -6,6 +6,10 @@ hide: libtool ======= + +GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface. + +http://www.gnu.org/software/libtool # Available modules @@ -14,20 +18,21 @@ The overview below shows which libtool installations are available per HPC-UGent To start using libtool, load one of these modules using a `module load` command like: ```shell -module load libtool/2.4.7-GCCcore-12.3.0 +module load libtool/2.4.7-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libtool/2.4.7-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libtool/2.4.7-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libtool/2.4.7-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libtool/2.4.7|x|x|x|x|x|x|x|x| -|libtool/2.4.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libtool/2.4.6-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libtool/2.4.6-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libtool/2.4.6-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|libtool/2.4.6-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|libtool/2.4.6-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libtool/2.4.7-GCCcore-13.2.0|x|x|x|x|x|x| +|libtool/2.4.7-GCCcore-12.3.0|x|x|x|x|x|x| +|libtool/2.4.7-GCCcore-12.2.0|x|x|x|x|x|x| +|libtool/2.4.7-GCCcore-11.3.0|x|x|x|x|x|x| +|libtool/2.4.7|x|x|x|x|x|x| +|libtool/2.4.6-GCCcore-11.2.0|x|x|x|x|x|x| +|libtool/2.4.6-GCCcore-10.3.0|x|x|x|x|x|x| +|libtool/2.4.6-GCCcore-10.2.0|x|x|x|x|x|x| +|libtool/2.4.6-GCCcore-9.3.0|x|x|x|x|x|x| +|libtool/2.4.6-GCCcore-8.3.0|x|x|x|x|x|x| +|libtool/2.4.6-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libunistring.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libunistring.md index 0a4e896f74e4..ad19e5142256 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libunistring.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libunistring.md @@ -6,6 +6,10 @@ hide: libunistring ============ + +This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard. + +https://www.gnu.org/software/libunistring/ # Available modules @@ -17,11 +21,11 @@ To start using libunistring, load one of these modules using a `module load` com module load libunistring/1.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libunistring/1.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libunistring/0.9.10-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|libunistring/0.9.10-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libunistring/0.9.10-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libunistring/1.0-GCCcore-11.2.0|x|x|x|x|x|x| +|libunistring/0.9.10-GCCcore-10.3.0|x|x|x|-|x|x| +|libunistring/0.9.10-GCCcore-9.3.0|-|x|x|-|x|x| +|libunistring/0.9.10-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libunwind.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libunwind.md index e88f97cb29d1..230558086b6c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libunwind.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libunwind.md @@ -6,6 +6,10 @@ hide: libunwind ========= + +The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications + +https://www.nongnu.org/libunwind/ # Available modules @@ -17,16 +21,16 @@ To start using libunwind, load one of these modules using a `module load` comman module load libunwind/1.6.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libunwind/1.6.2-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libunwind/1.6.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libunwind/1.6.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libunwind/1.5.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libunwind/1.4.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libunwind/1.4.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libunwind/1.3.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libunwind/1.3.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|libunwind/1.3.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libunwind/1.6.2-GCCcore-12.3.0|x|x|x|x|x|x| +|libunwind/1.6.2-GCCcore-12.2.0|x|x|x|x|x|x| +|libunwind/1.6.2-GCCcore-11.3.0|x|x|x|x|x|x| +|libunwind/1.5.0-GCCcore-11.2.0|x|x|x|x|x|x| +|libunwind/1.4.0-GCCcore-10.3.0|x|x|x|x|x|x| +|libunwind/1.4.0-GCCcore-10.2.0|x|x|x|x|x|x| +|libunwind/1.3.1-GCCcore-9.3.0|-|x|x|-|x|x| +|libunwind/1.3.1-GCCcore-8.3.0|x|x|x|-|x|x| +|libunwind/1.3.1-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libvdwxc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libvdwxc.md index fb8885531f34..46762ea91f74 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libvdwxc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libvdwxc.md @@ -6,6 +6,10 @@ hide: libvdwxc ======== + +libvdwxc is a general library for evaluating energy and potential forexchange-correlation (XC) functionals from the vdW-DF family that can be used with variousof density functional theory (DFT) codes. + +https://libvdwxc.org # Available modules @@ -17,9 +21,9 @@ To start using libvdwxc, load one of these modules using a `module load` command module load libvdwxc/0.4.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libvdwxc/0.4.0-foss-2021b|x|x|x|-|x|x|x|x| -|libvdwxc/0.4.0-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libvdwxc/0.4.0-foss-2021b|x|x|x|-|x|x| +|libvdwxc/0.4.0-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libvorbis.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libvorbis.md index 6fffa0fde031..72e9cfeb67e3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libvorbis.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libvorbis.md @@ -6,6 +6,10 @@ hide: libvorbis ========= + +Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressedaudio format + +https://xiph.org/vorbis/ # Available modules @@ -14,15 +18,16 @@ The overview below shows which libvorbis installations are available per HPC-UGe To start using libvorbis, load one of these modules using a `module load` command like: ```shell -module load libvorbis/1.3.7-GCCcore-12.2.0 +module load libvorbis/1.3.7-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libvorbis/1.3.7-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libvorbis/1.3.7-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libvorbis/1.3.7-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libvorbis/1.3.7-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|libvorbis/1.3.7-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libvorbis/1.3.7-GCCcore-12.3.0|x|x|x|x|x|x| +|libvorbis/1.3.7-GCCcore-12.2.0|x|x|x|x|x|x| +|libvorbis/1.3.7-GCCcore-11.3.0|x|x|x|x|x|x| +|libvorbis/1.3.7-GCCcore-11.2.0|x|x|x|x|x|x| +|libvorbis/1.3.7-GCCcore-10.3.0|x|x|x|x|x|x| +|libvorbis/1.3.7-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libvori.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libvori.md index bafb87184509..9b8e214e4446 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libvori.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libvori.md @@ -6,6 +6,10 @@ hide: libvori ======= + +C++ library implementing the Voronoi integration as well as the compressed bqbfile format. The present version of libvori is a very early developmentversion, which is hard-coded to work with the CP2k program package. + +https://brehm-research.de/libvori.php # Available modules @@ -14,11 +18,12 @@ The overview below shows which libvori installations are available per HPC-UGent To start using libvori, load one of these modules using a `module load` command like: ```shell -module load libvori/220621-GCCcore-12.2.0 +module load libvori/220621-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libvori/220621-GCCcore-12.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libvori/220621-GCCcore-12.3.0|x|x|x|x|x|x| +|libvori/220621-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libwebp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libwebp.md index 948f4be24275..a2b5879c474f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libwebp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libwebp.md @@ -6,6 +6,10 @@ hide: libwebp ======= + +WebP is a modern image format that provides superiorlossless and lossy compression for images on the web. Using WebP,webmasters and web developers can create smaller, richer images thatmake the web faster. + +https://developers.google.com/speed/webp/ # Available modules @@ -14,14 +18,16 @@ The overview below shows which libwebp installations are available per HPC-UGent To start using libwebp, load one of these modules using a `module load` command like: ```shell -module load libwebp/1.2.4-GCCcore-11.3.0 +module load libwebp/1.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libwebp/1.2.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libwebp/1.2.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libwebp/1.2.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|libwebp/1.1.0-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libwebp/1.3.1-GCCcore-12.3.0|x|x|x|x|x|x| +|libwebp/1.3.1-GCCcore-12.2.0|x|x|x|x|x|x| +|libwebp/1.2.4-GCCcore-11.3.0|x|x|x|x|x|x| +|libwebp/1.2.0-GCCcore-11.2.0|x|x|x|x|x|x| +|libwebp/1.2.0-GCCcore-10.3.0|x|x|x|-|x|x| +|libwebp/1.1.0-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libwpe.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libwpe.md index 13d990ed0cab..a78660bf4183 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libwpe.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libwpe.md @@ -6,6 +6,10 @@ hide: libwpe ====== + +WPE is the reference WebKit port for embedded andlow-consumption computer devices. It has been designed from theground-up with performance, small footprint, accelerated contentrendering, and simplicity of deployment in mind, bringing theexcellence of the WebKit engine to countless platforms and target devices. + +https://webkit.org/wpe # Available modules @@ -17,8 +21,8 @@ To start using libwpe, load one of these modules using a `module load` command l module load libwpe/1.13.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libwpe/1.13.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libwpe/1.13.3-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libxc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libxc.md index c59a40207979..0df98b3ac171 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libxc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libxc.md @@ -6,6 +6,10 @@ hide: libxc ===== + +Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals. + +https://www.tddft.org/programs/libxc # Available modules @@ -14,28 +18,29 @@ The overview below shows which libxc installations are available per HPC-UGent T To start using libxc, load one of these modules using a `module load` command like: ```shell -module load libxc/6.1.0-GCC-12.2.0 +module load libxc/6.2.2-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libxc/6.1.0-GCC-12.2.0|x|x|x|x|x|x|x|x| -|libxc/5.2.3-intel-compilers-2022.1.0|x|x|x|x|x|x|x|x| -|libxc/5.2.3-GCC-11.3.0|x|x|x|x|x|x|x|x| -|libxc/5.1.6-intel-compilers-2021.4.0|x|x|x|x|x|x|x|x| -|libxc/5.1.6-GCC-11.2.0|x|x|x|-|x|x|x|x| -|libxc/5.1.5-intel-compilers-2021.2.0|-|x|x|-|x|x|x|x| -|libxc/5.1.5-GCC-10.3.0|x|x|x|x|x|x|x|x| -|libxc/5.1.2-GCC-10.2.0|-|x|x|x|x|x|x|x| -|libxc/4.3.4-iccifort-2020.4.304|-|x|x|x|x|x|x|x| -|libxc/4.3.4-iccifort-2020.1.217|-|x|x|-|x|x|x|x| -|libxc/4.3.4-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|libxc/4.3.4-GCC-10.2.0|-|x|x|x|x|x|x|x| -|libxc/4.3.4-GCC-9.3.0|-|x|x|-|x|x|x|x| -|libxc/4.3.4-GCC-8.3.0|-|x|x|-|x|x|-|x| -|libxc/3.0.1-iomkl-2020a|-|x|-|-|-|-|-|-| -|libxc/3.0.1-intel-2020a|-|x|x|-|x|x|x|x| -|libxc/3.0.1-intel-2019b|-|x|-|-|-|-|-|-| -|libxc/3.0.1-foss-2020a|-|x|-|-|-|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libxc/6.2.2-GCC-12.3.0|x|x|x|x|x|x| +|libxc/6.1.0-GCC-12.2.0|x|x|x|x|x|x| +|libxc/5.2.3-intel-compilers-2022.1.0|x|x|x|x|x|x| +|libxc/5.2.3-GCC-11.3.0|x|x|x|x|x|x| +|libxc/5.1.6-intel-compilers-2021.4.0|x|x|x|x|x|x| +|libxc/5.1.6-GCC-11.2.0|x|x|x|-|x|x| +|libxc/5.1.5-intel-compilers-2021.2.0|-|x|x|-|x|x| +|libxc/5.1.5-GCC-10.3.0|x|x|x|x|x|x| +|libxc/5.1.2-GCC-10.2.0|-|x|x|x|x|x| +|libxc/4.3.4-iccifort-2020.4.304|-|x|x|x|x|x| +|libxc/4.3.4-iccifort-2020.1.217|-|x|x|-|x|x| +|libxc/4.3.4-iccifort-2019.5.281|-|x|x|-|x|x| +|libxc/4.3.4-GCC-10.2.0|-|x|x|x|x|x| +|libxc/4.3.4-GCC-9.3.0|-|x|x|-|x|x| +|libxc/4.3.4-GCC-8.3.0|-|x|x|-|x|x| +|libxc/3.0.1-iomkl-2020a|-|x|-|-|-|-| +|libxc/3.0.1-intel-2020a|-|x|x|-|x|x| +|libxc/3.0.1-intel-2019b|-|x|-|-|-|-| +|libxc/3.0.1-foss-2020a|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libxml++.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libxml++.md index 481194f0c6a9..a286533e15f9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libxml++.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libxml++.md @@ -6,6 +6,10 @@ hide: libxml++ ======== + +libxml++ is a C++ wrapper for the libxml XML parser library. + +http://libxmlplusplus.sourceforge.net # Available modules @@ -17,9 +21,9 @@ To start using libxml++, load one of these modules using a `module load` command module load libxml++/2.42.1-GCC-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libxml++/2.42.1-GCC-10.3.0|-|x|x|-|x|x|x|x| -|libxml++/2.40.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libxml++/2.42.1-GCC-10.3.0|-|x|x|-|x|x| +|libxml++/2.40.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libxml2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libxml2.md index c386262ff7e1..9ab7addb055b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libxml2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libxml2.md @@ -6,6 +6,10 @@ hide: libxml2 ======= + +Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform). + +http://xmlsoft.org/ # Available modules @@ -14,19 +18,20 @@ The overview below shows which libxml2 installations are available per HPC-UGent To start using libxml2, load one of these modules using a `module load` command like: ```shell -module load libxml2/2.11.4-GCCcore-12.3.0 +module load libxml2/2.11.5-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libxml2/2.11.4-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|libxml2/2.10.3-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libxml2/2.9.13-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libxml2/2.9.10-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libxml2/2.9.10-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libxml2/2.9.10-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libxml2/2.9.10-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|libxml2/2.9.9-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|libxml2/2.9.8-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libxml2/2.11.5-GCCcore-13.2.0|x|x|x|x|x|x| +|libxml2/2.11.4-GCCcore-12.3.0|x|x|x|x|x|x| +|libxml2/2.10.3-GCCcore-12.2.0|x|x|x|x|x|x| +|libxml2/2.9.13-GCCcore-11.3.0|x|x|x|x|x|x| +|libxml2/2.9.10-GCCcore-11.2.0|x|x|x|x|x|x| +|libxml2/2.9.10-GCCcore-10.3.0|x|x|x|x|x|x| +|libxml2/2.9.10-GCCcore-10.2.0|x|x|x|x|x|x| +|libxml2/2.9.10-GCCcore-9.3.0|x|x|x|x|x|x| +|libxml2/2.9.9-GCCcore-8.3.0|x|x|x|x|x|x| +|libxml2/2.9.8-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libxslt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libxslt.md index 6f2c2d670d8e..ac07edc45b43 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libxslt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libxslt.md @@ -6,6 +6,10 @@ hide: libxslt ======= + +Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform). + +http://xmlsoft.org/ # Available modules @@ -14,17 +18,19 @@ The overview below shows which libxslt installations are available per HPC-UGent To start using libxslt, load one of these modules using a `module load` command like: ```shell -module load libxslt/1.1.37-GCCcore-12.2.0 +module load libxslt/1.1.38-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libxslt/1.1.37-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libxslt/1.1.34-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libxslt/1.1.34-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libxslt/1.1.34-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libxslt/1.1.34-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libxslt/1.1.34-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|libxslt/1.1.34-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libxslt/1.1.38-GCCcore-13.2.0|x|x|x|x|x|x| +|libxslt/1.1.38-GCCcore-12.3.0|x|x|x|x|x|x| +|libxslt/1.1.37-GCCcore-12.2.0|x|x|x|x|x|x| +|libxslt/1.1.34-GCCcore-11.3.0|x|x|x|x|x|x| +|libxslt/1.1.34-GCCcore-11.2.0|x|x|x|x|x|x| +|libxslt/1.1.34-GCCcore-10.3.0|x|x|x|x|x|x| +|libxslt/1.1.34-GCCcore-10.2.0|x|x|x|x|x|x| +|libxslt/1.1.34-GCCcore-9.3.0|-|x|x|-|x|x| +|libxslt/1.1.34-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libxsmm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libxsmm.md index 109a904f131c..0a8f01783203 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libxsmm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libxsmm.md @@ -6,6 +6,10 @@ hide: libxsmm ======= + +LIBXSMM is a library for small dense and small sparse matrix-matrix multiplicationstargeting Intel Architecture (x86). + +https://github.com/hfp/libxsmm # Available modules @@ -14,18 +18,19 @@ The overview below shows which libxsmm installations are available per HPC-UGent To start using libxsmm, load one of these modules using a `module load` command like: ```shell -module load libxsmm/1.17-GCC-12.2.0 +module load libxsmm/1.17-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libxsmm/1.17-GCC-12.2.0|x|x|x|x|x|x|x|x| -|libxsmm/1.17-GCC-11.3.0|x|x|x|x|x|x|x|x| -|libxsmm/1.16.2-GCC-10.3.0|-|x|x|x|x|x|x|x| -|libxsmm/1.16.1-iccifort-2020.4.304|-|x|x|-|x|-|-|-| -|libxsmm/1.16.1-iccifort-2020.1.217|-|x|x|-|x|x|x|x| -|libxsmm/1.16.1-iccifort-2019.5.281|-|x|-|-|-|-|-|-| -|libxsmm/1.16.1-GCC-10.2.0|-|x|x|x|x|x|x|x| -|libxsmm/1.16.1-GCC-9.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libxsmm/1.17-GCC-12.3.0|x|x|x|x|x|x| +|libxsmm/1.17-GCC-12.2.0|x|x|x|x|x|x| +|libxsmm/1.17-GCC-11.3.0|x|x|x|x|x|x| +|libxsmm/1.16.2-GCC-10.3.0|-|x|x|x|x|x| +|libxsmm/1.16.1-iccifort-2020.4.304|-|x|x|-|x|-| +|libxsmm/1.16.1-iccifort-2020.1.217|-|x|x|-|x|x| +|libxsmm/1.16.1-iccifort-2019.5.281|-|x|-|-|-|-| +|libxsmm/1.16.1-GCC-10.2.0|-|x|x|x|x|x| +|libxsmm/1.16.1-GCC-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libyaml.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libyaml.md index db62d679c8a6..e137661c9f8d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libyaml.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libyaml.md @@ -6,6 +6,10 @@ hide: libyaml ======= + +LibYAML is a YAML parser and emitter written in C. + +https://pyyaml.org/wiki/LibYAML # Available modules @@ -14,17 +18,18 @@ The overview below shows which libyaml installations are available per HPC-UGent To start using libyaml, load one of these modules using a `module load` command like: ```shell -module load libyaml/0.2.5-GCCcore-12.2.0 +module load libyaml/0.2.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libyaml/0.2.5-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|libyaml/0.2.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|libyaml/0.2.5-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|libyaml/0.2.5-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|libyaml/0.2.5-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|libyaml/0.2.2-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|libyaml/0.2.2-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libyaml/0.2.5-GCCcore-12.3.0|x|x|x|x|x|x| +|libyaml/0.2.5-GCCcore-12.2.0|x|x|x|x|x|x| +|libyaml/0.2.5-GCCcore-11.3.0|x|x|x|x|x|x| +|libyaml/0.2.5-GCCcore-11.2.0|x|x|x|x|x|x| +|libyaml/0.2.5-GCCcore-10.3.0|x|x|x|x|x|x| +|libyaml/0.2.5-GCCcore-10.2.0|x|x|x|x|x|x| +|libyaml/0.2.2-GCCcore-9.3.0|x|x|x|x|x|x| +|libyaml/0.2.2-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/libzip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/libzip.md index 253e232b2f02..e111c1dd85d2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/libzip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/libzip.md @@ -6,6 +6,10 @@ hide: libzip ====== + +libzip is a C library for reading, creating, and modifying zip archives. + +https://libzip.org/ # Available modules @@ -17,8 +21,8 @@ To start using libzip, load one of these modules using a `module load` command l module load libzip/1.7.3-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|libzip/1.7.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|libzip/1.7.3-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lifelines.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lifelines.md index 3acfadec332e..18771ff1fcea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lifelines.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lifelines.md @@ -6,6 +6,10 @@ hide: lifelines ========= + +lifelines is a complete survival analysis library, written in pure Python. + +https://lifelines.readthedocs.io/en/latest/ # Available modules @@ -17,8 +21,15 @@ To start using lifelines, load one of these modules using a `module load` comman module load lifelines/0.27.4-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|lifelines/0.27.4-foss-2022a|x|x|x|x|x|x| + + +### lifelines/0.27.4-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|lifelines/0.27.4-foss-2022a|x|x|x|x|x|x|x|x| +astor-0.8.1, autograd-1.5, autograd-gamma-0.5.0, formulaic-0.4.0, interface_meta-1.3.0, lifelines-0.27.4, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/likwid.md b/mkdocs/docs/HPC/only/gent/available_software/detail/likwid.md index 0c378631cff0..6c82971c6958 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/likwid.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/likwid.md @@ -6,6 +6,10 @@ hide: likwid ====== + +Likwid stands for Like I knew what I am doing. This project contributes easy to use command line tools for Linux to support programmers in developing high performance multi threaded programs. + +https://github.com/RRZE-HPC/likwid # Available modules @@ -17,8 +21,8 @@ To start using likwid, load one of these modules using a `module load` command l module load likwid/5.0.1-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|likwid/5.0.1-GCCcore-8.3.0|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|likwid/5.0.1-GCCcore-8.3.0|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lmoments3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lmoments3.md new file mode 100644 index 000000000000..a486c13b0a29 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lmoments3.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +lmoments3 +========= + + +Estimate linear moments for statistical distribution functions. + +https://github.com/OpenHydrology/lmoments3 +# Available modules + + +The overview below shows which lmoments3 installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using lmoments3, load one of these modules using a `module load` command like: + +```shell +module load lmoments3/1.0.6-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|lmoments3/1.0.6-foss-2022a|x|x|x|x|x|x| + + +### lmoments3/1.0.6-foss-2022a + +This is a list of extensions included in the module: + +lmoments3-1.0.6, versioneer-0.29 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/longread_umi.md b/mkdocs/docs/HPC/only/gent/available_software/detail/longread_umi.md index f09ce9cb64cb..f422dbfc0ae4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/longread_umi.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/longread_umi.md @@ -6,6 +6,10 @@ hide: longread_umi ============ + +A collection of scripts for processing longread UMI data. + +https://github.com/SorenKarst/longread_umi # Available modules @@ -17,8 +21,8 @@ To start using longread_umi, load one of these modules using a `module load` com module load longread_umi/0.3.2-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|longread_umi/0.3.2-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|longread_umi/0.3.2-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/loomR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/loomR.md index 986057939471..f65a7d4cb127 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/loomR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/loomR.md @@ -6,6 +6,10 @@ hide: loomR ===== + +An R interface for loom files + +https://github.com/mojaveazure/loomR # Available modules @@ -14,11 +18,13 @@ The overview below shows which loomR installations are available per HPC-UGent T To start using loomR, load one of these modules using a `module load` command like: ```shell -module load loomR/0.2.0-20180425-foss-2022a-R-4.2.1 +module load loomR/0.2.0-20180425-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|loomR/0.2.0-20180425-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|loomR/0.2.0-20180425-foss-2023a-R-4.3.2|x|x|x|x|x|x| +|loomR/0.2.0-20180425-foss-2022b-R-4.2.2|x|x|x|x|x|x| +|loomR/0.2.0-20180425-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/loompy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/loompy.md index 4a786fd6fdbf..5a99dfd2bf7e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/loompy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/loompy.md @@ -6,6 +6,10 @@ hide: loompy ====== + +Python implementation of the Loom file format, an efficient file format for large omics datasets + +https://loompy.org/ # Available modules @@ -17,12 +21,43 @@ To start using loompy, load one of these modules using a `module load` command l module load loompy/3.0.7-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|loompy/3.0.7-intel-2021b|x|x|x|-|x|x| +|loompy/3.0.7-foss-2022a|x|x|x|x|x|x| +|loompy/3.0.7-foss-2021b|x|x|x|-|x|x| +|loompy/3.0.7-foss-2021a|x|x|x|x|x|x| +|loompy/3.0.6-intel-2020b|-|x|x|-|x|x| + + +### loompy/3.0.7-intel-2021b + +This is a list of extensions included in the module: + +loompy-3.0.7, numpy_groupies-0.9.14 + +### loompy/3.0.7-foss-2022a + +This is a list of extensions included in the module: + +loompy-3.0.7, numpy-groupies-0.9.20 + +### loompy/3.0.7-foss-2021b + +This is a list of extensions included in the module: + +loompy-3.0.7, numpy_groupies-0.9.14 + +### loompy/3.0.7-foss-2021a + +This is a list of extensions included in the module: + +loompy-3.0.7, numpy_groupies-0.9.14 + +### loompy/3.0.6-intel-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|loompy/3.0.7-intel-2021b|x|x|x|-|x|x|x|x| -|loompy/3.0.7-foss-2022a|x|x|x|x|x|x|x|x| -|loompy/3.0.7-foss-2021b|x|x|x|-|x|x|x|x| -|loompy/3.0.7-foss-2021a|x|x|x|x|x|x|x|x| -|loompy/3.0.6-intel-2020b|-|x|x|-|x|x|x|x| +loompy-3.0.6, numpy_groupies-0.9.13 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/louvain.md b/mkdocs/docs/HPC/only/gent/available_software/detail/louvain.md index 5dd22f7c1297..0a1592478dfe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/louvain.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/louvain.md @@ -6,6 +6,10 @@ hide: louvain ======= + +louvain is a general algorithm for methods of community detection in large networks + +https://pypi.org/project/louvain # Available modules @@ -17,8 +21,15 @@ To start using louvain, load one of these modules using a `module load` command module load louvain/0.8.0-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|louvain/0.8.0-foss-2021a|x|x|x|x|x|x| + + +### louvain/0.8.0-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|louvain/0.8.0-foss-2021a|x|x|x|x|x|x|x|x| +igraph-0.10.2, louvain-0.8.0, texttable-1.6.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lpsolve.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lpsolve.md index 97fd1dcc0733..e09bdfbe136c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lpsolve.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lpsolve.md @@ -6,6 +6,10 @@ hide: lpsolve ======= + +Mixed Integer Linear Programming (MILP) solver + +https://sourceforge.net/projects/lpsolve/ # Available modules @@ -17,11 +21,11 @@ To start using lpsolve, load one of these modules using a `module load` command module load lpsolve/5.5.2.11-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|lpsolve/5.5.2.11-GCC-11.2.0|x|x|x|x|x|x|x|x| -|lpsolve/5.5.2.11-GCC-10.2.0|x|x|x|x|x|x|x|x| -|lpsolve/5.5.2.5-iccifort-2019.5.281|-|x|x|-|x|x|-|x| -|lpsolve/5.5.2.5-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|lpsolve/5.5.2.11-GCC-11.2.0|x|x|x|x|x|x| +|lpsolve/5.5.2.11-GCC-10.2.0|x|x|x|x|x|x| +|lpsolve/5.5.2.5-iccifort-2019.5.281|-|x|x|-|x|x| +|lpsolve/5.5.2.5-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lxml.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lxml.md index 26c01e35bcd5..e99e36db3699 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lxml.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lxml.md @@ -6,6 +6,10 @@ hide: lxml ==== + +The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt. + +https://lxml.de/ # Available modules @@ -14,17 +18,19 @@ The overview below shows which lxml installations are available per HPC-UGent Ti To start using lxml, load one of these modules using a `module load` command like: ```shell -module load lxml/4.9.2-GCCcore-12.2.0 +module load lxml/4.9.3-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|lxml/4.9.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|lxml/4.9.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|lxml/4.6.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|lxml/4.6.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|lxml/4.6.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|lxml/4.5.2-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|lxml/4.4.2-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|lxml/4.9.3-GCCcore-13.2.0|x|x|x|x|x|x| +|lxml/4.9.2-GCCcore-12.3.0|x|x|x|x|x|x| +|lxml/4.9.2-GCCcore-12.2.0|x|x|x|x|x|x| +|lxml/4.9.1-GCCcore-11.3.0|x|x|x|x|x|x| +|lxml/4.6.3-GCCcore-11.2.0|x|x|x|x|x|x| +|lxml/4.6.3-GCCcore-10.3.0|x|x|x|x|x|x| +|lxml/4.6.2-GCCcore-10.2.0|x|x|x|x|x|x| +|lxml/4.5.2-GCCcore-9.3.0|-|x|x|-|x|x| +|lxml/4.4.2-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/lz4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/lz4.md index 0fea25ff43b8..0ebf4d09708d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/lz4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/lz4.md @@ -6,6 +6,10 @@ hide: lz4 === + +LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core. + +https://lz4.github.io/lz4/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which lz4 installations are available per HPC-UGent Tie To start using lz4, load one of these modules using a `module load` command like: ```shell -module load lz4/1.9.4-GCCcore-12.3.0 +module load lz4/1.9.4-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|lz4/1.9.4-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|lz4/1.9.4-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|lz4/1.9.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|lz4/1.9.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|lz4/1.9.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|lz4/1.9.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|lz4/1.9.2-GCCcore-9.3.0|-|x|x|x|x|x|x|x| -|lz4/1.9.2-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|lz4/1.9.4-GCCcore-13.2.0|x|x|x|x|x|x| +|lz4/1.9.4-GCCcore-12.3.0|x|x|x|x|x|x| +|lz4/1.9.4-GCCcore-12.2.0|x|x|x|x|x|x| +|lz4/1.9.3-GCCcore-11.3.0|x|x|x|x|x|x| +|lz4/1.9.3-GCCcore-11.2.0|x|x|x|x|x|x| +|lz4/1.9.3-GCCcore-10.3.0|x|x|x|x|x|x| +|lz4/1.9.2-GCCcore-10.2.0|x|x|x|x|x|x| +|lz4/1.9.2-GCCcore-9.3.0|-|x|x|x|x|x| +|lz4/1.9.2-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/maeparser.md b/mkdocs/docs/HPC/only/gent/available_software/detail/maeparser.md index 0d81b697ce75..2f684669dfd6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/maeparser.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/maeparser.md @@ -6,6 +6,10 @@ hide: maeparser ========= + +maeparser is a parser for Schrodinger Maestro files. + +https://github.com/schrodinger/maeparser # Available modules @@ -17,8 +21,8 @@ To start using maeparser, load one of these modules using a `module load` comman module load maeparser/1.3.0-iimpi-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|maeparser/1.3.0-iimpi-2020a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|maeparser/1.3.0-iimpi-2020a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/magma.md b/mkdocs/docs/HPC/only/gent/available_software/detail/magma.md index 5654c9f66144..444569d5b510 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/magma.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/magma.md @@ -6,6 +6,10 @@ hide: magma ===== + +The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems. + +https://icl.cs.utk.edu/magma/ # Available modules @@ -14,13 +18,14 @@ The overview below shows which magma installations are available per HPC-UGent T To start using magma, load one of these modules using a `module load` command like: ```shell -module load magma/2.6.2-foss-2022a-CUDA-11.7.0 +module load magma/2.7.2-foss-2023a-CUDA-12.1.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|magma/2.6.2-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-|-|-| -|magma/2.6.1-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|magma/2.5.4-fosscuda-2020b|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|magma/2.7.2-foss-2023a-CUDA-12.1.1|x|-|x|-|x|-| +|magma/2.6.2-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|magma/2.6.1-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|magma/2.5.4-fosscuda-2020b|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mahotas.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mahotas.md index 00e0a0561148..870850bb155c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mahotas.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mahotas.md @@ -6,6 +6,10 @@ hide: mahotas ======= + +Mahotas is a computer vision and image processing library for Python + +https://mahotas.readthedocs.io/ # Available modules @@ -17,8 +21,8 @@ To start using mahotas, load one of these modules using a `module load` command module load mahotas/1.4.13-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mahotas/1.4.13-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mahotas/1.4.13-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/make.md b/mkdocs/docs/HPC/only/gent/available_software/detail/make.md index de7a84ea3552..cddb4799077c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/make.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/make.md @@ -6,6 +6,10 @@ hide: make ==== + +GNU version of make utility + +https://www.gnu.org/software/make/make.html # Available modules @@ -14,18 +18,19 @@ The overview below shows which make installations are available per HPC-UGent Ti To start using make, load one of these modules using a `module load` command like: ```shell -module load make/4.4.1-GCCcore-12.3.0 +module load make/4.4.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|make/4.4.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|make/4.3-GCCcore-12.2.0|-|x|x|-|x|-|-|-| -|make/4.3-GCCcore-11.3.0|x|x|x|-|x|-|-|-| -|make/4.3-GCCcore-11.2.0|-|x|-|x|-|-|-|-| -|make/4.3-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|make/4.3-GCCcore-10.2.0|-|x|-|-|-|-|-|-| -|make/4.3-GCCcore-9.3.0|-|x|x|-|x|x|-|x| -|make/4.2.1-GCCcore-8.3.0|-|x|-|-|-|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|make/4.4.1-GCCcore-13.2.0|x|x|x|x|x|x| +|make/4.4.1-GCCcore-12.3.0|x|x|x|x|x|x| +|make/4.3-GCCcore-12.2.0|-|x|x|-|x|-| +|make/4.3-GCCcore-11.3.0|x|x|x|-|x|-| +|make/4.3-GCCcore-11.2.0|x|x|-|x|-|-| +|make/4.3-GCCcore-10.3.0|x|x|x|-|x|x| +|make/4.3-GCCcore-10.2.0|x|x|-|-|-|-| +|make/4.3-GCCcore-9.3.0|-|x|x|-|x|x| +|make/4.2.1-GCCcore-8.3.0|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/makedepend.md b/mkdocs/docs/HPC/only/gent/available_software/detail/makedepend.md index a457508ca9ec..a13116e73d6d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/makedepend.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/makedepend.md @@ -6,6 +6,10 @@ hide: makedepend ========== + +The makedepend package contains a C-preprocessor like utility to determine build-time dependencies. + +https://linux.die.net/man/1/makedepend # Available modules @@ -17,9 +21,9 @@ To start using makedepend, load one of these modules using a `module load` comma module load makedepend/1.0.6-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|makedepend/1.0.6-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|makedepend/1.0.6-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|makedepend/1.0.6-GCCcore-10.3.0|-|x|x|-|x|x| +|makedepend/1.0.6-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/makeinfo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/makeinfo.md index 4344a630e004..d8c916958145 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/makeinfo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/makeinfo.md @@ -6,6 +6,10 @@ hide: makeinfo ======== + +makeinfo is part of the Texinfo project, the official documentation format of the GNU project. + +https://www.gnu.org/software/texinfo/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which makeinfo installations are available per HPC-UGen To start using makeinfo, load one of these modules using a `module load` command like: ```shell -module load makeinfo/6.7-GCCcore-10.3.0-minimal +module load makeinfo/7.0.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|makeinfo/6.7-GCCcore-10.3.0-minimal|x|x|x|x|x|x|x|x| -|makeinfo/6.7-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|makeinfo/6.7-GCCcore-10.2.0-minimal|x|x|x|x|x|x|x|x| -|makeinfo/6.7-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|makeinfo/6.7-GCCcore-9.3.0-minimal|x|x|x|x|x|x|x|x| -|makeinfo/6.7-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|makeinfo/6.7-GCCcore-8.3.0-minimal|x|x|x|x|x|x|x|x| -|makeinfo/6.7-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|makeinfo/7.0.3-GCCcore-12.3.0|x|x|x|x|x|x| +|makeinfo/6.7-GCCcore-10.3.0-minimal|x|x|x|x|x|x| +|makeinfo/6.7-GCCcore-10.3.0|-|x|x|-|x|x| +|makeinfo/6.7-GCCcore-10.2.0-minimal|x|x|x|x|x|x| +|makeinfo/6.7-GCCcore-10.2.0|-|x|x|x|x|x| +|makeinfo/6.7-GCCcore-9.3.0-minimal|x|x|x|x|x|x| +|makeinfo/6.7-GCCcore-9.3.0|-|x|x|-|x|x| +|makeinfo/6.7-GCCcore-8.3.0-minimal|x|x|x|x|x|x| +|makeinfo/6.7-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/manta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/manta.md index ac1f0fa80d53..d1824cb6d7ca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/manta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/manta.md @@ -6,6 +6,10 @@ hide: manta ===== + +Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads.It is optimized for analysis of germline variation in small sets of individuals andsomatic variation in tumor/normal sample pairs. Manta discovers, assembles andscores large-scale SVs, medium-sized indels and large insertions within asingle efficient workflow. + +https://github.com/Illumina/manta # Available modules @@ -17,8 +21,8 @@ To start using manta, load one of these modules using a `module load` command li module load manta/1.6.0-gompi-2020a-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|manta/1.6.0-gompi-2020a-Python-2.7.18|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|manta/1.6.0-gompi-2020a-Python-2.7.18|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mapDamage.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mapDamage.md index e1f4d6ec9519..e8268e6cc3d8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mapDamage.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mapDamage.md @@ -6,6 +6,10 @@ hide: mapDamage ========= + +mapDamage2 is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms. + +https://ginolhac.github.io/mapDamage/ # Available modules @@ -17,8 +21,8 @@ To start using mapDamage, load one of these modules using a `module load` comman module load mapDamage/2.2.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mapDamage/2.2.1-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mapDamage/2.2.1-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/matplotlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/matplotlib.md index 00525b255ea3..44855c8eb346 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/matplotlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/matplotlib.md @@ -6,6 +6,10 @@ hide: matplotlib ========== + +matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits. + +https://matplotlib.org # Available modules @@ -14,29 +18,151 @@ The overview below shows which matplotlib installations are available per HPC-UG To start using matplotlib, load one of these modules using a `module load` command like: ```shell -module load matplotlib/3.7.0-gfbf-2022b +module load matplotlib/3.7.2-gfbf-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|matplotlib/3.7.0-gfbf-2022b|x|x|x|x|x|x|x|x| -|matplotlib/3.5.2-intel-2022a|x|x|x|x|x|x|x|x| -|matplotlib/3.5.2-foss-2022a|x|x|x|x|x|x|x|x| -|matplotlib/3.5.2-foss-2021b|x|-|x|-|x|-|-|-| -|matplotlib/3.4.3-intel-2021b|x|x|x|-|x|x|x|x| -|matplotlib/3.4.3-foss-2021b|x|x|x|x|x|x|x|x| -|matplotlib/3.4.2-gomkl-2021a|x|x|x|x|x|x|x|x| -|matplotlib/3.4.2-foss-2021a|x|x|x|x|x|x|x|x| -|matplotlib/3.3.3-intel-2020b|-|x|x|-|x|x|x|x| -|matplotlib/3.3.3-fosscuda-2020b|x|-|-|-|x|-|-|-| -|matplotlib/3.3.3-foss-2020b|x|x|x|x|x|x|x|x| -|matplotlib/3.2.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|matplotlib/3.2.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|matplotlib/3.1.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|matplotlib/3.1.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|matplotlib/2.2.5-intel-2020a-Python-2.7.18|-|x|x|-|x|x|x|x| -|matplotlib/2.2.5-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| -|matplotlib/2.2.4-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| -|matplotlib/2.2.4-foss-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|matplotlib/3.7.2-gfbf-2023a|x|x|x|x|x|x| +|matplotlib/3.7.0-gfbf-2022b|x|x|x|x|x|x| +|matplotlib/3.5.2-intel-2022a|x|x|x|x|x|x| +|matplotlib/3.5.2-foss-2022a|x|x|x|x|x|x| +|matplotlib/3.5.2-foss-2021b|x|-|x|-|x|-| +|matplotlib/3.4.3-intel-2021b|x|x|x|-|x|x| +|matplotlib/3.4.3-foss-2021b|x|x|x|x|x|x| +|matplotlib/3.4.2-gomkl-2021a|x|x|x|x|x|x| +|matplotlib/3.4.2-foss-2021a|x|x|x|x|x|x| +|matplotlib/3.3.3-intel-2020b|-|x|x|-|x|x| +|matplotlib/3.3.3-fosscuda-2020b|x|-|-|-|x|-| +|matplotlib/3.3.3-foss-2020b|x|x|x|x|x|x| +|matplotlib/3.2.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|matplotlib/3.2.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|matplotlib/3.1.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|matplotlib/3.1.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|matplotlib/2.2.5-intel-2020a-Python-2.7.18|-|x|x|-|x|x| +|matplotlib/2.2.5-foss-2020b-Python-2.7.18|-|x|x|x|x|x| +|matplotlib/2.2.4-intel-2019b-Python-2.7.16|-|x|x|-|x|x| +|matplotlib/2.2.4-foss-2019b-Python-2.7.16|-|x|x|-|x|x| + + +### matplotlib/3.7.2-gfbf-2023a + +This is a list of extensions included in the module: + +contourpy-1.1.0, Cycler-0.11.0, fonttools-4.42.0, kiwisolver-1.4.4, matplotlib-3.7.2 + +### matplotlib/3.7.0-gfbf-2022b + +This is a list of extensions included in the module: + +contourpy-1.0.7, Cycler-0.11.0, fonttools-4.38.0, kiwisolver-1.4.4, matplotlib-3.7.0 + +### matplotlib/3.5.2-intel-2022a + +This is a list of extensions included in the module: + +Cycler-0.11.0, fonttools-4.34.0, kiwisolver-1.4.3, matplotlib-3.5.2 + +### matplotlib/3.5.2-foss-2022a + +This is a list of extensions included in the module: + +Cycler-0.11.0, fonttools-4.34.0, kiwisolver-1.4.3, matplotlib-3.5.2 + +### matplotlib/3.5.2-foss-2021b + +This is a list of extensions included in the module: + +cppy-1.2.1, Cycler-0.11.0, fonttools-4.34.0, kiwisolver-1.4.3, matplotlib-3.5.2, Pillow-9.1.1, setuptools-62.1.0 + +### matplotlib/3.4.3-intel-2021b + +This is a list of extensions included in the module: + +Cycler-0.11.0, kiwisolver-1.3.2, matplotlib-3.4.3 + +### matplotlib/3.4.3-foss-2021b + +This is a list of extensions included in the module: + +Cycler-0.11.0, kiwisolver-1.3.2, matplotlib-3.4.3 + +### matplotlib/3.4.2-gomkl-2021a + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.3.1, matplotlib-3.4.2 + +### matplotlib/3.4.2-foss-2021a + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.3.1, matplotlib-3.4.2 + +### matplotlib/3.3.3-intel-2020b + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.3.0, matplotlib-3.3.3 + +### matplotlib/3.3.3-fosscuda-2020b + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.3.0, matplotlib-3.3.3 + +### matplotlib/3.3.3-foss-2020b + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.3.0, matplotlib-3.3.3 + +### matplotlib/3.2.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.2.1 + +### matplotlib/3.2.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.2.1 + +### matplotlib/3.1.1-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.1.1 + +### matplotlib/3.1.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-3.1.1 + +### matplotlib/2.2.5-intel-2020a-Python-2.7.18 + +This is a list of extensions included in the module: + +backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.5, subprocess32-3.5.4 + +### matplotlib/2.2.5-foss-2020b-Python-2.7.18 + +This is a list of extensions included in the module: + +backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.5, subprocess32-3.5.4 + +### matplotlib/2.2.4-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.4, subprocess32-3.5.4 + +### matplotlib/2.2.4-foss-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +backports.functools_lru_cache-1.6.1, Cycler-0.10.0, kiwisolver-1.1.0, matplotlib-2.2.4, subprocess32-3.5.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/maturin.md b/mkdocs/docs/HPC/only/gent/available_software/detail/maturin.md new file mode 100644 index 000000000000..540bf826c40d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/maturin.md @@ -0,0 +1,31 @@ +--- +hide: + - toc +--- + +maturin +======= + + +This project is meant as a zero configurationreplacement for setuptools-rust and milksnake. It supports buildingwheels for python 3.5+ on windows, linux, mac and freebsd, can uploadthem to pypi and has basic pypy and graalpy support. + +https://github.com/pyo3/maturin +# Available modules + + +The overview below shows which maturin installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using maturin, load one of these modules using a `module load` command like: + +```shell +module load maturin/1.4.0-GCCcore-12.3.0-Rust-1.75.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|maturin/1.4.0-GCCcore-12.3.0-Rust-1.75.0|x|x|x|x|x|x| +|maturin/1.4.0-GCCcore-12.2.0-Rust-1.75.0|x|x|x|x|x|x| +|maturin/1.1.0-GCCcore-12.3.0|x|x|x|x|x|x| +|maturin/1.1.0-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mauveAligner.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mauveAligner.md index f8de30111992..e83c7fedf97e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mauveAligner.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mauveAligner.md @@ -6,6 +6,10 @@ hide: mauveAligner ============ + +Mauve is a system for constructing multiple genome alignments in the presenceof large-scale evolutionary events such as rearrangement and inversion.Multiple genome alignments provide a basis for research into comparativegenomics and the study of genome-wide evolutionary dynamics.This version was built without Graphical User Interface. + +https://darlinglab.org/mauve/mauve.html # Available modules @@ -17,8 +21,8 @@ To start using mauveAligner, load one of these modules using a `module load` com module load mauveAligner/4736-gompi-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mauveAligner/4736-gompi-2020a|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mauveAligner/4736-gompi-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/maze.md b/mkdocs/docs/HPC/only/gent/available_software/detail/maze.md index 0449c4768042..dd7fd9215070 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/maze.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/maze.md @@ -6,6 +6,10 @@ hide: maze ==== + +In a similar manner to dot plots, maze highlights localsequence similarity between two DNA sequences. In particular, maximal exactsubstring matches are computed with MUMmer3 and visualised. + +https://github.com/dellytools/maze # Available modules @@ -17,8 +21,8 @@ To start using maze, load one of these modules using a `module load` command lik module load maze/20170124-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|maze/20170124-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|maze/20170124-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mcu.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mcu.md index 2f562e7946ac..1918e6087152 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mcu.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mcu.md @@ -6,6 +6,10 @@ hide: mcu === + +A package for periodic wavefunction and crystallography analysis. mcu is designed to support large scale analysis and topological descriptions for periodic wavefunction. + +https://hungqpham.com/mcu/ # Available modules @@ -17,8 +21,8 @@ To start using mcu, load one of these modules using a `module load` command like module load mcu/2021-04-06-gomkl-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mcu/2021-04-06-gomkl-2021a|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mcu/2021-04-06-gomkl-2021a|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/medImgProc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/medImgProc.md index 54261b842b5c..970c585bda06 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/medImgProc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/medImgProc.md @@ -6,6 +6,10 @@ hide: medImgProc ========== + +Motion correction, explicit spatio-temporal regularization of motion tracking, random specklesenhancement, and segmentation. + +https://github.com/WeiXuanChan/motionSegmentation # Available modules @@ -17,8 +21,15 @@ To start using medImgProc, load one of these modules using a `module load` comma module load medImgProc/2.5.7-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|medImgProc/2.5.7-foss-2019b-Python-3.7.4|-|x|-|-|-|x| + + +### medImgProc/2.5.7-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|medImgProc/2.5.7-foss-2019b-Python-3.7.4|-|x|-|-|-|x|-|x| +imageio-2.8.0, medImgProc-2.5.7, phasepack-1.5, PyWavelets-1.1.1, trimesh-3.6.15 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/medaka.md b/mkdocs/docs/HPC/only/gent/available_software/detail/medaka.md index da24b61ac261..98a6d4261608 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/medaka.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/medaka.md @@ -6,6 +6,10 @@ hide: medaka ====== + +medaka is a tool to create a consensus sequence from nanopore sequencing data. + +https://github.com/nanoporetech/medaka # Available modules @@ -14,18 +18,74 @@ The overview below shows which medaka installations are available per HPC-UGent To start using medaka, load one of these modules using a `module load` command like: ```shell -module load medaka/1.9.1-foss-2022a +module load medaka/1.11.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|medaka/1.9.1-foss-2022a|x|x|x|x|x|x|x|x| -|medaka/1.8.1-foss-2022a|x|x|x|x|x|x|x|x| -|medaka/1.6.0-foss-2021b|x|x|x|-|x|x|x|x| -|medaka/1.4.3-foss-2020b|-|x|x|x|x|x|x|x| -|medaka/1.4.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|medaka/1.2.6-foss-2019b-Python-3.7.4|-|x|-|-|-|-|x|-| -|medaka/1.1.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| -|medaka/1.1.1-foss-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|medaka/1.11.3-foss-2022a|x|x|x|x|x|x| +|medaka/1.9.1-foss-2022a|x|x|x|x|x|x| +|medaka/1.8.1-foss-2022a|x|x|x|x|x|x| +|medaka/1.6.0-foss-2021b|x|x|x|-|x|x| +|medaka/1.4.3-foss-2020b|-|x|x|x|x|x| +|medaka/1.4.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|medaka/1.2.6-foss-2019b-Python-3.7.4|-|x|-|-|-|-| +|medaka/1.1.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|medaka/1.1.1-foss-2019b-Python-3.7.4|-|-|x|-|x|x| + + +### medaka/1.11.3-foss-2022a + +This is a list of extensions included in the module: + +mappy-2.24, medaka-1.11.3, pyspoa-0.2.1, wurlitzer-3.0.3 + +### medaka/1.9.1-foss-2022a + +This is a list of extensions included in the module: + +mappy-2.24, medaka-1.9.1 + +### medaka/1.8.1-foss-2022a + +This is a list of extensions included in the module: + +mappy-2.24, medaka-1.8.1 + +### medaka/1.6.0-foss-2021b + +This is a list of extensions included in the module: + +mappy-2.22, medaka-1.6.0 + +### medaka/1.4.3-foss-2020b + +This is a list of extensions included in the module: + +intervaltree-3.1.0, mappy-2.22, medaka-1.4.3, ont-fast5-api-3.3.0, parasail-1.2.4, progressbar33-2.4, sortedcontainers-2.4.0, whatshap-1.1, xopen-1.1.0 + +### medaka/1.4.3-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +intervaltree-3.1.0, isal-0.10.0, mappy-2.20, medaka-1.4.3, parasail-1.2.4, sortedcontainers-2.4.0, whatshap-1.1, xopen-1.1.0 + +### medaka/1.2.6-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +intervaltree-3.1.0, isal-0.9.0, mappy-2.17, medaka-1.2.6, ont-fast5-api-3.3.0, parasail-1.2.4, progressbar33-2.4, pyfaidx-0.5.9.5, sortedcontainers-2.3.0, whatshap-1.0, xopen-1.1.0 + +### medaka/1.1.3-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mappy-2.17, medaka-1.1.3, ont-fast5-api-3.1.6, parasail-1.2, progressbar33-2.4, pyfaidx-0.5.9.1, whatshap-1.0, xopen-0.9.0 + +### medaka/1.1.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mappy-2.17, medaka-1.1.1, ont-fast5-api-3.1.6, parasail-1.2, progressbar33-2.4, pyfaidx-0.5.9.1, whatshap-1.0, xopen-0.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/meshalyzer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/meshalyzer.md index f182b5414948..ca4a18051e87 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/meshalyzer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/meshalyzer.md @@ -6,6 +6,10 @@ hide: meshalyzer ========== + +Graphical program for display time dependent data on 3D finite elment meshes + +https://git.opencarp.org/openCARP/meshalyzer # Available modules @@ -17,10 +21,10 @@ To start using meshalyzer, load one of these modules using a `module load` comma module load meshalyzer/20200308-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|meshalyzer/20200308-foss-2020a-Python-3.8.2|-|x|x|-|x|x|-|x| -|meshalyzer/2.2-foss-2020b|-|x|x|x|x|x|x|x| -|meshalyzer/2.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|meshalyzer/20200308-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|meshalyzer/2.2-foss-2020b|-|x|x|x|x|x| +|meshalyzer/2.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/meshtool.md b/mkdocs/docs/HPC/only/gent/available_software/detail/meshtool.md index d79563adc390..205ceb2590ee 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/meshtool.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/meshtool.md @@ -6,6 +6,10 @@ hide: meshtool ======== + +Meshtool is a comand-line tool written in C++. It is designed to apply various manipulations tovolumetric meshes. + +https://bitbucket.org/aneic/meshtool # Available modules @@ -17,9 +21,9 @@ To start using meshtool, load one of these modules using a `module load` command module load meshtool/16-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|meshtool/16-GCC-10.2.0|-|x|x|x|x|x|x|x| -|meshtool/16-GCC-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|meshtool/16-GCC-10.2.0|-|x|x|x|x|x| +|meshtool/16-GCC-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/meson-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/meson-python.md new file mode 100644 index 000000000000..9ee5da6d714d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/meson-python.md @@ -0,0 +1,42 @@ +--- +hide: + - toc +--- + +meson-python +============ + + +Python build backend (PEP 517) for Meson projects + +https://github.com/mesonbuild/meson-python +# Available modules + + +The overview below shows which meson-python installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using meson-python, load one of these modules using a `module load` command like: + +```shell +module load meson-python/0.15.0-GCCcore-13.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|meson-python/0.15.0-GCCcore-13.2.0|x|x|x|x|x|x| +|meson-python/0.13.2-GCCcore-12.3.0|x|x|x|x|x|x| + + +### meson-python/0.15.0-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +meson-python-0.15.0, pyproject-metadata-0.7.1 + +### meson-python/0.13.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +meson-python-0.13.2, pyproject-metadata-0.7.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/metaWRAP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/metaWRAP.md index a5f4c6bbfad6..4f94ef94c5d5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/metaWRAP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/metaWRAP.md @@ -6,6 +6,10 @@ hide: metaWRAP ======== + +MetaWRAP aims to be an easy-to-use metagenomic wrapper suitethat accomplishes the core tasks of metagenomic analysis from start to finish:read quality control, assembly, visualization, taxonomic profiling, extractingdraft genomes (binning), and functional annotation. + +https://github.com/bxlab/metaWRAP # Available modules @@ -17,8 +21,8 @@ To start using metaWRAP, load one of these modules using a `module load` command module load metaWRAP/1.3-foss-2020b-Python-2.7.18 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|metaWRAP/1.3-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|metaWRAP/1.3-foss-2020b-Python-2.7.18|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/metaerg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/metaerg.md index 4a9ccf2ffed2..10f73945bf9e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/metaerg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/metaerg.md @@ -6,6 +6,10 @@ hide: metaerg ======= + +MetaErg is a stand-alone and fully automated metagenomic and metaproteomic data annotation pipeline. + +https://github.com/xiaoli-dong/metaerg # Available modules @@ -17,8 +21,8 @@ To start using metaerg, load one of these modules using a `module load` command module load metaerg/1.2.3-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|metaerg/1.2.3-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|metaerg/1.2.3-intel-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/methylpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/methylpy.md index e754addf4e8a..13debb78bc60 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/methylpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/methylpy.md @@ -6,6 +6,10 @@ hide: methylpy ======== + +Bisulfite sequencing data processing and differential methylation analysis. + +https://pypi.python.org/pypi/methylpy # Available modules @@ -17,8 +21,8 @@ To start using methylpy, load one of these modules using a `module load` command module load methylpy/1.2.9-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|methylpy/1.2.9-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|methylpy/1.2.9-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mgen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mgen.md index d2aa81e1fef3..aa1b36b32747 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mgen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mgen.md @@ -6,6 +6,10 @@ hide: mgen ==== + +Convenient matrix generation functions + +https://github.com/NOhs/mgen/tree/master # Available modules @@ -17,8 +21,8 @@ To start using mgen, load one of these modules using a `module load` command lik module load mgen/1.2.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mgen/1.2.1-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mgen/1.2.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mgltools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mgltools.md index 84c274b99530..dd481d6d73f4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mgltools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mgltools.md @@ -6,6 +6,10 @@ hide: mgltools ======== + +The MGLTools software suite can be used for visualization and analysis of molecular structures and comprises the Python Molecular Viewer (PMV, a general purpose molecular viewer), AutoDockTools (ADT, a set of PMV commands specifically developed to support AutoDock users) and Vision (a visual programming environment). + +https://ccsb.scripps.edu/mgltools/ # Available modules @@ -17,8 +21,8 @@ To start using mgltools, load one of these modules using a `module load` command module load mgltools/1.5.7 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mgltools/1.5.7|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mgltools/1.5.7|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mhcnuggets.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mhcnuggets.md index 303862642e47..9d41caff2683 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mhcnuggets.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mhcnuggets.md @@ -6,6 +6,10 @@ hide: mhcnuggets ========== + +MHCnuggets: Neoantigen peptide MHC binding prediction for class I and II. + +https://github.com/KarchinLab/mhcnuggets # Available modules @@ -17,9 +21,9 @@ To start using mhcnuggets, load one of these modules using a `module load` comma module load mhcnuggets/2.3-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mhcnuggets/2.3-fosscuda-2020b|-|-|-|-|x|-|-|-| -|mhcnuggets/2.3-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mhcnuggets/2.3-fosscuda-2020b|-|-|-|-|x|-| +|mhcnuggets/2.3-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/microctools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/microctools.md index f17afcbb67a6..00f082b74b86 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/microctools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/microctools.md @@ -6,6 +6,10 @@ hide: microctools =========== + +Various worker functions for microclimc package + +https://github.com/ilyamaclean/microctools # Available modules @@ -17,8 +21,8 @@ To start using microctools, load one of these modules using a `module load` comm module load microctools/0.1.0-20201209-foss-2020b-R-4.0.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|microctools/0.1.0-20201209-foss-2020b-R-4.0.4|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|microctools/0.1.0-20201209-foss-2020b-R-4.0.4|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/minibar.md b/mkdocs/docs/HPC/only/gent/available_software/detail/minibar.md index 74d0773f79dc..7e48c28e81b7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/minibar.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/minibar.md @@ -6,6 +6,10 @@ hide: minibar ======= + +Dual barcode and primer demultiplexing for MinION sequenced reads + +https://github.com/calacademy-research/minibar # Available modules @@ -17,9 +21,9 @@ To start using minibar, load one of these modules using a `module load` command module load minibar/20200326-iccifort-2020.1.217-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|minibar/20200326-iccifort-2020.1.217-Python-3.8.2|-|x|x|-|x|-|-|-| -|minibar/20200326-iccifort-2019.5.281-Python-3.7.4|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|minibar/20200326-iccifort-2020.1.217-Python-3.8.2|-|x|x|-|x|-| +|minibar/20200326-iccifort-2019.5.281-Python-3.7.4|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md index 0ace65757936..297b03f86cd9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/minimap2.md @@ -6,6 +6,10 @@ hide: minimap2 ======== + +Minimap2 is a fast sequence mapping and alignmentprogram that can find overlaps between long noisy reads, or map longreads or their assemblies to a reference genome optionally with detailedalignment (i.e. CIGAR). At present, it works efficiently with querysequences from a few kilobases to ~100 megabases in length at an errorrate ~15%. Minimap2 outputs in the PAF or the SAM format. On limitedtest data sets, minimap2 is over 20 times faster than most otherlong-read aligners. It will replace BWA-MEM for long reads and contigalignment. + +https://github.com/lh3/minimap2 # Available modules @@ -14,19 +18,20 @@ The overview below shows which minimap2 installations are available per HPC-UGen To start using minimap2, load one of these modules using a `module load` command like: ```shell -module load minimap2/2.26-GCCcore-12.2.0 +module load minimap2/2.26-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|minimap2/2.26-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|minimap2/2.24-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|minimap2/2.24-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|minimap2/2.22-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|minimap2/2.20-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|minimap2/2.20-GCCcore-10.2.0|-|x|x|-|x|x|x|x| -|minimap2/2.18-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|minimap2/2.17-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|minimap2/2.17-GCC-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|minimap2/2.26-GCCcore-12.3.0|x|x|x|x|x|x| +|minimap2/2.26-GCCcore-12.2.0|x|x|x|x|x|x| +|minimap2/2.24-GCCcore-11.3.0|x|x|x|x|x|x| +|minimap2/2.24-GCCcore-11.2.0|x|x|x|-|x|x| +|minimap2/2.22-GCCcore-11.2.0|x|x|x|-|x|x| +|minimap2/2.20-GCCcore-10.3.0|x|x|x|-|x|x| +|minimap2/2.20-GCCcore-10.2.0|-|x|x|-|x|x| +|minimap2/2.18-GCCcore-10.2.0|-|x|x|x|x|x| +|minimap2/2.17-GCCcore-9.3.0|-|x|x|-|x|x| +|minimap2/2.17-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/minizip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/minizip.md index 73026880d875..b4b176fe76ff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/minizip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/minizip.md @@ -6,6 +6,10 @@ hide: minizip ======= + +Mini zip and unzip based on zlib + +https://www.winimage.com/zLibDll/minizip.html # Available modules @@ -17,8 +21,8 @@ To start using minizip, load one of these modules using a `module load` command module load minizip/1.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|minizip/1.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|minizip/1.1-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/misha.md b/mkdocs/docs/HPC/only/gent/available_software/detail/misha.md index 68d4bdf5f4c4..0ea2f81aaa1a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/misha.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/misha.md @@ -6,6 +6,10 @@ hide: misha ===== + +The misha package is intended to help users to efficiently analyze genomic data achieved from various experiments. + +https://github.com/tanaylab/misha # Available modules @@ -17,8 +21,8 @@ To start using misha, load one of these modules using a `module load` command li module load misha/4.0.10-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|misha/4.0.10-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|misha/4.0.10-foss-2020a-R-4.0.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mkl-service.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mkl-service.md index 770f7403e20f..658465e02d54 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mkl-service.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mkl-service.md @@ -6,6 +6,10 @@ hide: mkl-service =========== + +Python hooks for Intel(R) Math Kernel Library runtime control settings. + +https://github.com/IntelPython/mkl-service # Available modules @@ -17,10 +21,10 @@ To start using mkl-service, load one of these modules using a `module load` comm module load mkl-service/2.3.0-intel-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mkl-service/2.3.0-intel-2021b|x|x|x|-|x|x|x|x| -|mkl-service/2.3.0-intel-2020b|-|-|x|-|x|x|x|x| -|mkl-service/2.3.0-intel-2019b-Python-3.7.4|-|-|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mkl-service/2.3.0-intel-2021b|x|x|x|-|x|x| +|mkl-service/2.3.0-intel-2020b|-|-|x|-|x|x| +|mkl-service/2.3.0-intel-2019b-Python-3.7.4|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mm-common.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mm-common.md index 5cd430167671..9c0960a602f3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mm-common.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mm-common.md @@ -6,6 +6,10 @@ hide: mm-common ========= + +The mm-common module provides the build infrastructure and utilities shared among the GNOME C++ binding libraries. + +https://gitlab.gnome.org/GNOME/mm-common # Available modules @@ -17,8 +21,8 @@ To start using mm-common, load one of these modules using a `module load` comman module load mm-common/1.0.4-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mm-common/1.0.4-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mm-common/1.0.4-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/molmod.md b/mkdocs/docs/HPC/only/gent/available_software/detail/molmod.md index cf526b4152fd..7c887ea79a48 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/molmod.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/molmod.md @@ -6,6 +6,10 @@ hide: molmod ====== + +MolMod is a Python library with many compoments that are useful to write molecular modeling programs. + +https://molmod.github.io/molmod/ # Available modules @@ -17,10 +21,10 @@ To start using molmod, load one of these modules using a `module load` command l module load molmod/1.4.5-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|molmod/1.4.5-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|molmod/1.4.5-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|molmod/1.4.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|molmod/1.4.5-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|molmod/1.4.5-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|molmod/1.4.5-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mongolite.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mongolite.md index fe81f058a548..9cda9d303c30 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mongolite.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mongolite.md @@ -6,6 +6,10 @@ hide: mongolite ========= + +High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'. Includes support for aggregation, indexing, map-reduce, streaming, encryption, enterprise authentication, and GridFS. The online user manual provides an overview of the available methods in the package: . + +https://cran.r-project.org/web/packages/mongolite # Available modules @@ -17,10 +21,10 @@ To start using mongolite, load one of these modules using a `module load` comman module load mongolite/2.3.0-foss-2020b-R-4.0.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mongolite/2.3.0-foss-2020b-R-4.0.4|-|x|x|x|x|x|x|x| -|mongolite/2.3.0-foss-2020b-R-4.0.3|-|x|x|x|x|x|x|x| -|mongolite/2.3.0-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mongolite/2.3.0-foss-2020b-R-4.0.4|-|x|x|x|x|x| +|mongolite/2.3.0-foss-2020b-R-4.0.3|-|x|x|x|x|x| +|mongolite/2.3.0-foss-2020a-R-4.0.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/monitor.md b/mkdocs/docs/HPC/only/gent/available_software/detail/monitor.md index 7b73dcf8502d..d5ef5e1a63e4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/monitor.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/monitor.md @@ -6,6 +6,10 @@ hide: monitor ======= + +monitor logs cpu and memory usage of a running application + +https://github.com/gjbex/monitor # Available modules @@ -17,8 +21,15 @@ To start using monitor, load one of these modules using a `module load` command module load monitor/1.1.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|monitor/1.1.2|-|x|x|-|x|-| + + +### monitor/1.1.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|monitor/1.1.2|-|x|x|-|x|-|x|-| +Data::Dumper-2.183, Getopt::Long-2.52, IO-1.48, List::Util-1.60, Set::Scalar-1.29 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mosdepth.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mosdepth.md index 144eaa4f54dc..d033c3c9ef96 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mosdepth.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mosdepth.md @@ -6,6 +6,10 @@ hide: mosdepth ======== + +Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing + +https://github.com/brentp/mosdepth # Available modules @@ -17,8 +21,8 @@ To start using mosdepth, load one of these modules using a `module load` command module load mosdepth/0.3.3-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mosdepth/0.3.3-GCC-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mosdepth/0.3.3-GCC-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/motionSegmentation.md b/mkdocs/docs/HPC/only/gent/available_software/detail/motionSegmentation.md index 522b5a00a933..d2c623d6064a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/motionSegmentation.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/motionSegmentation.md @@ -6,6 +6,10 @@ hide: motionSegmentation ================== + +Motion correction, explicit spatio-temporal regularization of motion tracking, random specklesenhancement, and segmentation. + +https://github.com/WeiXuanChan/motionSegmentation # Available modules @@ -17,8 +21,15 @@ To start using motionSegmentation, load one of these modules using a `module loa module load motionSegmentation/2.7.9-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|motionSegmentation/2.7.9-foss-2019b-Python-3.7.4|-|x|-|-|-|x| + + +### motionSegmentation/2.7.9-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|motionSegmentation/2.7.9-foss-2019b-Python-3.7.4|-|x|-|-|-|x|-|x| +autoD-3.9.2, imageio-2.8.0, motionSegmentation-2.7.9, trimesh-3.6.15 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mpath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mpath.md new file mode 100644 index 000000000000..7233f5049dfd --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mpath.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +mpath +===== + + +For now it's quit simple and get_path_info()method returns information about given path. It can be eithera directory or a file path. + +https://pypi.org/project/mpath/ +# Available modules + + +The overview below shows which mpath installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using mpath, load one of these modules using a `module load` command like: + +```shell +module load mpath/1.1.3-GCCcore-11.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mpath/1.1.3-GCCcore-11.3.0|x|x|x|x|x|x| + + +### mpath/1.1.3-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +mclass-1.3.4, mpath-1.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mpi4py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mpi4py.md index 0ca268514a42..c5bb36d015ab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mpi4py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mpi4py.md @@ -6,6 +6,10 @@ hide: mpi4py ====== + +MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors. + +https://github.com/mpi4py/mpi4py # Available modules @@ -14,11 +18,25 @@ The overview below shows which mpi4py installations are available per HPC-UGent To start using mpi4py, load one of these modules using a `module load` command like: ```shell -module load mpi4py/3.1.4-gompi-2022b +module load mpi4py/3.1.4-gompi-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mpi4py/3.1.4-gompi-2023a|x|x|x|x|x|x| +|mpi4py/3.1.4-gompi-2022b|x|x|x|x|x|x| + + +### mpi4py/3.1.4-gompi-2023a + +This is a list of extensions included in the module: + +mpi4py-3.1.4 + +### mpi4py/3.1.4-gompi-2022b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mpi4py/3.1.4-gompi-2022b|x|x|x|x|x|x|x|x| +mpi4py-3.1.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mrcfile.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mrcfile.md index 9fc9aee01ec6..182e8e99a1fe 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mrcfile.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mrcfile.md @@ -6,6 +6,10 @@ hide: mrcfile ======= + +mrcfile is a Python implementation of the MRC2014 file format, which is used in structural biology to store image and volume data.It allows MRC files to be created and opened easily using a very simple API, which exposes the file’s header and data as numpy arrays. The code runs in Python 2 and 3 and is fully unit-tested.This library aims to allow users and developers to read and write standard-compliant MRC files in Python as easily as possible, and with no dependencies onany compiled libraries except numpy. You can use it interactively to inspect files, correct headers and so on, or in scripts and larger software packages to provide basic MRC file I/O functions. + +https://github.com/ccpem/mrcfile # Available modules @@ -17,9 +21,9 @@ To start using mrcfile, load one of these modules using a `module load` command module load mrcfile/1.3.0-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mrcfile/1.3.0-fosscuda-2020b|x|-|-|-|x|-|-|-| -|mrcfile/1.3.0-foss-2020b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mrcfile/1.3.0-fosscuda-2020b|x|-|-|-|x|-| +|mrcfile/1.3.0-foss-2020b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/muParser.md b/mkdocs/docs/HPC/only/gent/available_software/detail/muParser.md index 6b6926dda4b9..4caef6f940b7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/muParser.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/muParser.md @@ -6,6 +6,10 @@ hide: muParser ======== + +muParser is an extensible high performance math expression parser library written in C++. It works by transforming a mathematical expression into bytecode and precalculating constant parts of the expression. + +https://beltoforion.de/article.php?a=muparser # Available modules @@ -14,11 +18,12 @@ The overview below shows which muParser installations are available per HPC-UGen To start using muParser, load one of these modules using a `module load` command like: ```shell -module load muParser/2.3.2-GCCcore-10.2.0 +module load muParser/2.3.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|muParser/2.3.2-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|muParser/2.3.4-GCCcore-12.3.0|x|x|x|x|x|x| +|muParser/2.3.2-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mujoco-py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mujoco-py.md index 7ac7f4ed0bd3..b718f203fbcc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mujoco-py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mujoco-py.md @@ -6,6 +6,10 @@ hide: mujoco-py ========= + +MuJoCo Python Bindings + +https://github.com/deepmind/mujoco # Available modules @@ -17,9 +21,22 @@ To start using mujoco-py, load one of these modules using a `module load` comman module load mujoco-py/2.3.7-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mujoco-py/2.3.7-foss-2023a|x|x|x|x|x|x| +|mujoco-py/2.1.2.14-foss-2021b|x|x|x|x|x|x| + + +### mujoco-py/2.3.7-foss-2023a + +This is a list of extensions included in the module: + +absl-py-1.4.0, glfw-2.6.2, mujoco-2.3.7 + +### mujoco-py/2.1.2.14-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mujoco-py/2.3.7-foss-2023a|x|x|x|x|x|x|x|x| -|mujoco-py/2.1.2.14-foss-2021b|x|x|x|x|x|x|x|x| +fasteners-0.17.2, glfw-2.5.0, mujoco-py-2.1.2.14 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/multichoose.md b/mkdocs/docs/HPC/only/gent/available_software/detail/multichoose.md index aa302f609e3b..006850cc9fcb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/multichoose.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/multichoose.md @@ -6,6 +6,10 @@ hide: multichoose =========== + +generate multiset combinations (n multichoose k). + +https://github.com/ekg/multichoose # Available modules @@ -14,11 +18,12 @@ The overview below shows which multichoose installations are available per HPC-U To start using multichoose, load one of these modules using a `module load` command like: ```shell -module load multichoose/1.0.3-GCCcore-10.2.0 +module load multichoose/1.0.3-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|multichoose/1.0.3-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|multichoose/1.0.3-GCCcore-11.3.0|x|x|x|x|x|x| +|multichoose/1.0.3-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mygene.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mygene.md index 95c560e3a3de..a56f2d3f8073 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mygene.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mygene.md @@ -6,6 +6,10 @@ hide: mygene ====== + +Python Client for MyGene.Info services. + +https://github.com/biothings/mygene.py # Available modules @@ -14,11 +18,25 @@ The overview below shows which mygene installations are available per HPC-UGent To start using mygene, load one of these modules using a `module load` command like: ```shell -module load mygene/3.2.2-foss-2022a +module load mygene/3.2.2-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mygene/3.2.2-foss-2022b|x|x|x|x|x|x| +|mygene/3.2.2-foss-2022a|x|x|x|x|x|x| + + +### mygene/3.2.2-foss-2022b + +This is a list of extensions included in the module: + +biothings_client-0.3.1, mygene-3.2.2 + +### mygene/3.2.2-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mygene/3.2.2-foss-2022a|x|x|x|x|x|x|x|x| +biothings_client-0.2.6, mygene-3.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/mysqlclient.md b/mkdocs/docs/HPC/only/gent/available_software/detail/mysqlclient.md index ae79d7d2f57d..d532391f990c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/mysqlclient.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/mysqlclient.md @@ -6,6 +6,10 @@ hide: mysqlclient =========== + +Python interface to MySQL + +https://github.com/PyMySQL/mysqlclient-python # Available modules @@ -17,8 +21,8 @@ To start using mysqlclient, load one of these modules using a `module load` comm module load mysqlclient/2.1.1-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|mysqlclient/2.1.1-foss-2021a|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|mysqlclient/2.1.1-foss-2021a|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/n2v.md b/mkdocs/docs/HPC/only/gent/available_software/detail/n2v.md new file mode 100644 index 000000000000..0ecd98f3f95b --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/n2v.md @@ -0,0 +1,42 @@ +--- +hide: + - toc +--- + +n2v +=== + + +Learning Denoising from Single Noisy Images + +https://github.com/juglab/n2v +# Available modules + + +The overview below shows which n2v installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using n2v, load one of these modules using a `module load` command like: + +```shell +module load n2v/0.3.2-foss-2022a-CUDA-11.7.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|n2v/0.3.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|n2v/0.3.2-foss-2022a|x|x|x|x|x|x| + + +### n2v/0.3.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +n2v-0.3.2 + +### n2v/0.3.2-foss-2022a + +This is a list of extensions included in the module: + +n2v-0.3.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nanocompore.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nanocompore.md index e20a687d7cc6..4b166f98f276 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nanocompore.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nanocompore.md @@ -6,6 +6,10 @@ hide: nanocompore =========== + +Nanocompore identifies differences in ONT nanopore sequencing raw signal corresponding to RNA modifications by comparing 2 samples + +https://nanocompore.rna.rocks/ # Available modules @@ -17,8 +21,15 @@ To start using nanocompore, load one of these modules using a `module load` comm module load nanocompore/1.0.0rc3-2-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nanocompore/1.0.0rc3-2-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### nanocompore/1.0.0rc3-2-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nanocompore/1.0.0rc3-2-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +bedparse-0.2.3, nanocompore-1.0.0rc3-2, pyfaidx-0.5.9.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nanofilt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nanofilt.md index bb6b74fd737f..b63bf8676d62 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nanofilt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nanofilt.md @@ -6,6 +6,10 @@ hide: nanofilt ======== + +Filtering and trimming of long read sequencing data. + +https://github.com/wdecoster/nanofilt # Available modules @@ -17,9 +21,9 @@ To start using nanofilt, load one of these modules using a `module load` command module load nanofilt/2.6.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nanofilt/2.6.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|nanofilt/2.6.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nanofilt/2.6.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|nanofilt/2.6.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nanoget.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nanoget.md index 72376b86addf..296bbfa00746 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nanoget.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nanoget.md @@ -6,6 +6,10 @@ hide: nanoget ======= + +Functions to extract information from Oxford Nanopore sequencing data and alignments + +https://github.com/wdecoster/nanoget # Available modules @@ -17,11 +21,11 @@ To start using nanoget, load one of these modules using a `module load` command module load nanoget/1.18.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nanoget/1.18.1-foss-2022a|x|x|x|x|x|x|x|x| -|nanoget/1.18.1-foss-2021a|x|x|x|x|x|x|x|x| -|nanoget/1.15.0-intel-2020b|-|x|x|-|x|x|x|x| -|nanoget/1.12.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nanoget/1.18.1-foss-2022a|x|x|x|x|x|x| +|nanoget/1.18.1-foss-2021a|x|x|x|x|x|x| +|nanoget/1.15.0-intel-2020b|-|x|x|-|x|x| +|nanoget/1.12.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nanomath.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nanomath.md index 828e9e3dbdc8..109741698b2a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nanomath.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nanomath.md @@ -6,6 +6,10 @@ hide: nanomath ======== + +A few simple math function for other Oxford Nanopore processing scripts + +https://github.com/wdecoster/nanomath # Available modules @@ -17,11 +21,30 @@ To start using nanomath, load one of these modules using a `module load` command module load nanomath/1.3.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nanomath/1.3.0-foss-2022a|x|x|x|x|x|x| +|nanomath/1.2.1-foss-2021a|x|x|x|x|x|x| +|nanomath/1.2.0-intel-2020b|-|x|x|-|x|x| +|nanomath/0.23.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### nanomath/1.3.0-foss-2022a + +This is a list of extensions included in the module: + +nanomath-1.3.0, Python-Deprecated-1.1.0 + +### nanomath/1.2.1-foss-2021a + +This is a list of extensions included in the module: + +nanomath-1.2.1, Python-Deprecated-1.1.0 + +### nanomath/1.2.0-intel-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nanomath/1.3.0-foss-2022a|x|x|x|x|x|x|x|x| -|nanomath/1.2.1-foss-2021a|x|x|x|x|x|x|x|x| -|nanomath/1.2.0-intel-2020b|-|x|x|-|x|x|x|x| -|nanomath/0.23.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +nanomath-1.2.0, Python-Deprecated-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nanopolish.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nanopolish.md index d919d0e8bd6c..6a533e469c6b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nanopolish.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nanopolish.md @@ -6,6 +6,10 @@ hide: nanopolish ========== + +Software package for signal-level analysis of Oxford Nanopore sequencing data. + +https://github.com/jts/nanopolish # Available modules @@ -14,12 +18,13 @@ The overview below shows which nanopolish installations are available per HPC-UG To start using nanopolish, load one of these modules using a `module load` command like: ```shell -module load nanopolish/0.13.3-foss-2020b +module load nanopolish/0.14.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nanopolish/0.13.3-foss-2020b|-|x|x|x|x|x|x|x| -|nanopolish/0.13.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nanopolish/0.14.0-foss-2022a|x|x|x|x|x|x| +|nanopolish/0.13.3-foss-2020b|-|x|x|x|x|x| +|nanopolish/0.13.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/napari.md b/mkdocs/docs/HPC/only/gent/available_software/detail/napari.md index 26d47254b395..42148f72d1e5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/napari.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/napari.md @@ -6,6 +6,10 @@ hide: napari ====== + +napari is a fast, interactive, multi-dimensional image viewer for Python. It's designed for browsing, annotating, and analyzing large multi-dimensional images.It's built on top of Qt (for the GUI), vispy (for performant GPU-based rendering), and the scientific Python stack (numpy, scipy). + +https://napari.org/ # Available modules @@ -14,11 +18,25 @@ The overview below shows which napari installations are available per HPC-UGent To start using napari, load one of these modules using a `module load` command like: ```shell -module load napari/0.4.15-foss-2021b +module load napari/0.4.18-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|napari/0.4.18-foss-2022a|x|x|x|x|x|x| +|napari/0.4.15-foss-2021b|x|x|x|-|x|x| + + +### napari/0.4.18-foss-2022a + +This is a list of extensions included in the module: + +app-model-0.1.1, build-0.10.0, cachey-0.2.1, docstring_parser-0.15, in_n_out-0.1.8, lazy_loader-0.3, magicgui-0.6.1, markdown-it-py-2.1.0, mdurl-0.1.2, mypy_extensions-1.0.0, napari-0.4.18, napari-console-0.0.8, napari-plugin-engine-0.2.0, napari-svg-0.1.10, npe2-0.7.2, numpydoc-1.5.0, psygnal-0.9.2, pyproject_hooks-1.0.0, rich-13.2.0, superqt-0.5.0, tornado-6.1, typer-0.7.0 + +### napari/0.4.15-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|napari/0.4.15-foss-2021b|x|x|x|-|x|x|x|x| +beniget-0.4.1, build-0.8.0, cachey-0.2.1, docstring-parser-0.14.1, freetype_py-2.3.0, gast-0.5.3, hsluv-5.0.3, magicgui-0.5.1, napari-0.4.15, napari-console-0.0.4, napari-plugin-engine-0.2.0, napari-svg-0.1.6, npe2-0.5.0, numpydoc-1.4.0, pep517-0.12.0, Pint-0.19.2, ply-3.11, psygnal-0.3.5, pydantic-1.9.1, pythran-0.10.0, pytomlpp-1.0.10, superqt-0.3.2, tifffile-2022.5.4, tomli-2.0.1, typer-0.4.1, vispy-0.10.0, wrapt-1.12.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ncbi-vdb.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ncbi-vdb.md index 60e5d65dd6f0..e457c804deab 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ncbi-vdb.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ncbi-vdb.md @@ -6,6 +6,10 @@ hide: ncbi-vdb ======== + +The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives. + +https://github.com/ncbi/ncbi-vdb # Available modules @@ -17,12 +21,12 @@ To start using ncbi-vdb, load one of these modules using a `module load` command module load ncbi-vdb/3.0.2-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ncbi-vdb/3.0.2-gompi-2022a|x|x|x|x|x|x|x|x| -|ncbi-vdb/3.0.0-gompi-2021b|x|x|x|x|x|x|x|x| -|ncbi-vdb/2.11.2-gompi-2021b|x|x|x|-|x|x|x|x| -|ncbi-vdb/2.10.9-gompi-2020b|-|x|x|x|x|x|x|x| -|ncbi-vdb/2.10.7-gompi-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ncbi-vdb/3.0.2-gompi-2022a|x|x|x|x|x|x| +|ncbi-vdb/3.0.0-gompi-2021b|x|x|x|x|x|x| +|ncbi-vdb/2.11.2-gompi-2021b|x|x|x|x|x|x| +|ncbi-vdb/2.10.9-gompi-2020b|-|x|x|x|x|x| +|ncbi-vdb/2.10.7-gompi-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ncdf4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ncdf4.md index 975a5cc5fe60..76c7ca4cd1d9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ncdf4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ncdf4.md @@ -6,6 +6,10 @@ hide: ncdf4 ===== + +ncdf4: Interface to Unidata netCDF (version 4 or earlier) format data files + +https://cran.r-project.org/web/packages/ncdf4 # Available modules @@ -17,11 +21,11 @@ To start using ncdf4, load one of these modules using a `module load` command li module load ncdf4/1.17-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ncdf4/1.17-foss-2021a-R-4.1.0|-|x|x|-|x|x|x|x| -|ncdf4/1.17-foss-2020b-R-4.0.3|x|x|x|x|x|x|x|x| -|ncdf4/1.17-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| -|ncdf4/1.17-foss-2019b|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ncdf4/1.17-foss-2021a-R-4.1.0|-|x|x|-|x|x| +|ncdf4/1.17-foss-2020b-R-4.0.3|x|x|x|x|x|x| +|ncdf4/1.17-foss-2020a-R-4.0.0|-|x|x|-|x|x| +|ncdf4/1.17-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ncolor.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ncolor.md index 6671a9b87ef8..abb77fd8e24c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ncolor.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ncolor.md @@ -6,6 +6,10 @@ hide: ncolor ====== + +Fast remapping of instance labels 1,2,3,...,M toa smaller set of repeating, disjoint labels, 1,2,...,N. + +https://github.com/kevinjohncutler/ncolor # Available modules @@ -17,8 +21,15 @@ To start using ncolor, load one of these modules using a `module load` command l module load ncolor/1.2.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ncolor/1.2.1-foss-2022a|x|x|x|x|x|x| + + +### ncolor/1.2.1-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ncolor/1.2.1-foss-2022a|x|x|x|x|x|x|x|x| +edt-2.3.1, fastremap-1.13.5, ncolor-1.2.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ncurses.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ncurses.md index aa94c00b3086..580433983339 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ncurses.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ncurses.md @@ -6,6 +6,10 @@ hide: ncurses ======= + +The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses. + +http://www.gnu.org/software/ncurses/ # Available modules @@ -14,23 +18,25 @@ The overview below shows which ncurses installations are available per HPC-UGent To start using ncurses, load one of these modules using a `module load` command like: ```shell -module load ncurses/6.4-GCCcore-12.3.0 +module load ncurses/6.4-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ncurses/6.4-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|ncurses/6.3-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|ncurses/6.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|ncurses/6.3|x|x|x|x|x|x|x|x| -|ncurses/6.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|ncurses/6.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|ncurses/6.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|ncurses/6.2-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|ncurses/6.2|x|x|x|x|x|x|x|x| -|ncurses/6.1-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|ncurses/6.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|ncurses/6.1|x|x|x|x|x|x|x|x| -|ncurses/6.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ncurses/6.4-GCCcore-13.2.0|x|x|x|x|x|x| +|ncurses/6.4-GCCcore-12.3.0|x|x|x|x|x|x| +|ncurses/6.4|x|x|x|x|x|x| +|ncurses/6.3-GCCcore-12.2.0|x|x|x|x|x|x| +|ncurses/6.3-GCCcore-11.3.0|x|x|x|x|x|x| +|ncurses/6.3|x|x|x|x|x|x| +|ncurses/6.2-GCCcore-11.2.0|x|x|x|x|x|x| +|ncurses/6.2-GCCcore-10.3.0|x|x|x|x|x|x| +|ncurses/6.2-GCCcore-10.2.0|x|x|x|x|x|x| +|ncurses/6.2-GCCcore-9.3.0|x|x|x|x|x|x| +|ncurses/6.2|x|x|x|x|x|x| +|ncurses/6.1-GCCcore-8.3.0|x|x|x|x|x|x| +|ncurses/6.1-GCCcore-8.2.0|-|x|-|-|-|-| +|ncurses/6.1|x|x|x|x|x|x| +|ncurses/6.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ncview.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ncview.md index 6dc50ee5b1e2..14ba3eff683c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ncview.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ncview.md @@ -6,6 +6,10 @@ hide: ncview ====== + +Ncview is a visual browser for netCDF format files.Typically you would use ncview to get a quick and easy, push-buttonlook at your netCDF files. You can view simple movies of the data,view along various dimensions, take a look at the actual data values,change color maps, invert the data, etc. + +http://meteora.ucsd.edu/~pierce/ncview_home_page.html # Available modules @@ -17,8 +21,8 @@ To start using ncview, load one of these modules using a `module load` command l module load ncview/2.1.7-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ncview/2.1.7-intel-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ncview/2.1.7-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-C++4.md b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-C++4.md index 527672783d8f..7d3dbca80492 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-C++4.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-C++4.md @@ -6,6 +6,10 @@ hide: netCDF-C++4 =========== + +NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. + +https://www.unidata.ucar.edu/software/netcdf/ # Available modules @@ -17,12 +21,12 @@ To start using netCDF-C++4, load one of these modules using a `module load` comm module load netCDF-C++4/4.3.1-iimpi-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|netCDF-C++4/4.3.1-iimpi-2020b|-|x|x|x|x|x|x|x| -|netCDF-C++4/4.3.1-iimpi-2019b|-|x|x|-|x|x|x|x| -|netCDF-C++4/4.3.1-gompi-2021b|x|x|x|-|x|x|x|x| -|netCDF-C++4/4.3.1-gompi-2021a|-|x|x|-|x|x|x|x| -|netCDF-C++4/4.3.1-gompi-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|netCDF-C++4/4.3.1-iimpi-2020b|-|x|x|x|x|x| +|netCDF-C++4/4.3.1-iimpi-2019b|-|x|x|-|x|x| +|netCDF-C++4/4.3.1-gompi-2021b|x|x|x|-|x|x| +|netCDF-C++4/4.3.1-gompi-2021a|-|x|x|-|x|x| +|netCDF-C++4/4.3.1-gompi-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-Fortran.md b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-Fortran.md index b6dbaf59f30a..7a6044ae2440 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-Fortran.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF-Fortran.md @@ -6,6 +6,10 @@ hide: netCDF-Fortran ============== + +NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. + +https://www.unidata.ucar.edu/software/netcdf/ # Available modules @@ -17,16 +21,17 @@ To start using netCDF-Fortran, load one of these modules using a `module load` c module load netCDF-Fortran/4.6.0-iimpi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|netCDF-Fortran/4.6.0-iimpi-2022a|-|-|x|-|x|x|x|x| -|netCDF-Fortran/4.5.3-iimpi-2021b|x|x|x|x|x|x|x|x| -|netCDF-Fortran/4.5.3-iimpi-2020b|-|x|x|x|x|x|x|x| -|netCDF-Fortran/4.5.3-gompi-2021b|x|x|x|-|x|x|x|x| -|netCDF-Fortran/4.5.3-gompi-2021a|-|x|x|-|x|x|x|x| -|netCDF-Fortran/4.5.2-iimpi-2020a|-|x|x|-|x|x|x|x| -|netCDF-Fortran/4.5.2-iimpi-2019b|-|x|x|-|x|x|x|x| -|netCDF-Fortran/4.5.2-gompi-2020a|-|x|x|-|x|x|x|x| -|netCDF-Fortran/4.5.2-gompi-2019b|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|netCDF-Fortran/4.6.0-iimpi-2022a|-|-|x|-|x|x| +|netCDF-Fortran/4.6.0-gompi-2022a|x|-|x|-|x|-| +|netCDF-Fortran/4.5.3-iimpi-2021b|x|x|x|x|x|x| +|netCDF-Fortran/4.5.3-iimpi-2020b|-|x|x|x|x|x| +|netCDF-Fortran/4.5.3-gompi-2021b|x|x|x|x|x|x| +|netCDF-Fortran/4.5.3-gompi-2021a|-|x|x|-|x|x| +|netCDF-Fortran/4.5.2-iimpi-2020a|-|x|x|-|x|x| +|netCDF-Fortran/4.5.2-iimpi-2019b|-|x|x|-|x|x| +|netCDF-Fortran/4.5.2-gompi-2020a|-|x|x|-|x|x| +|netCDF-Fortran/4.5.2-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF.md index ebad14f5a84f..bc2d5468abfb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/netCDF.md @@ -6,6 +6,10 @@ hide: netCDF ====== + +NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data. + +https://www.unidata.ucar.edu/software/netcdf/ # Available modules @@ -14,24 +18,25 @@ The overview below shows which netCDF installations are available per HPC-UGent To start using netCDF, load one of these modules using a `module load` command like: ```shell -module load netCDF/4.9.0-iimpi-2022a +module load netCDF/4.9.2-gompi-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|netCDF/4.9.0-iimpi-2022a|-|-|x|-|x|x|x|x| -|netCDF/4.9.0-gompi-2022b|x|x|x|x|x|x|x|x| -|netCDF/4.9.0-gompi-2022a|x|x|x|x|x|x|x|x| -|netCDF/4.8.1-iimpi-2021b|x|x|x|x|x|x|x|x| -|netCDF/4.8.1-gompi-2021b|x|x|x|x|x|x|x|x| -|netCDF/4.8.0-iimpi-2021a|-|x|x|-|x|x|x|x| -|netCDF/4.8.0-gompi-2021a|x|x|x|x|x|x|x|x| -|netCDF/4.7.4-iimpi-2020b|-|x|x|x|x|x|x|x| -|netCDF/4.7.4-iimpi-2020a|-|x|x|-|x|x|x|x| -|netCDF/4.7.4-gompic-2020b|-|-|-|-|x|-|-|-| -|netCDF/4.7.4-gompi-2020b|x|x|x|x|x|x|x|x| -|netCDF/4.7.4-gompi-2020a|-|x|x|-|x|x|x|x| -|netCDF/4.7.1-iimpi-2019b|-|x|x|-|x|x|x|x| -|netCDF/4.7.1-gompi-2019b|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|netCDF/4.9.2-gompi-2023a|x|x|x|x|x|x| +|netCDF/4.9.0-iimpi-2022a|-|-|x|-|x|x| +|netCDF/4.9.0-gompi-2022b|x|x|x|x|x|x| +|netCDF/4.9.0-gompi-2022a|x|x|x|x|x|x| +|netCDF/4.8.1-iimpi-2021b|x|x|x|x|x|x| +|netCDF/4.8.1-gompi-2021b|x|x|x|x|x|x| +|netCDF/4.8.0-iimpi-2021a|-|x|x|-|x|x| +|netCDF/4.8.0-gompi-2021a|x|x|x|x|x|x| +|netCDF/4.7.4-iimpi-2020b|-|x|x|x|x|x| +|netCDF/4.7.4-iimpi-2020a|-|x|x|-|x|x| +|netCDF/4.7.4-gompic-2020b|-|-|-|-|x|-| +|netCDF/4.7.4-gompi-2020b|x|x|x|x|x|x| +|netCDF/4.7.4-gompi-2020a|-|x|x|-|x|x| +|netCDF/4.7.1-iimpi-2019b|-|x|x|-|x|x| +|netCDF/4.7.1-gompi-2019b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/netcdf4-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/netcdf4-python.md index 78518e8300fe..80e018eccce8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/netcdf4-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/netcdf4-python.md @@ -6,6 +6,10 @@ hide: netcdf4-python ============== + +Python/numpy interface to netCDF. + +https://unidata.github.io/netcdf4-python/ # Available modules @@ -14,18 +18,88 @@ The overview below shows which netcdf4-python installations are available per HP To start using netcdf4-python, load one of these modules using a `module load` command like: ```shell -module load netcdf4-python/1.5.7-intel-2021b +module load netcdf4-python/1.6.4-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|netcdf4-python/1.5.7-intel-2021b|x|x|x|-|x|x|x|x| -|netcdf4-python/1.5.7-foss-2021b|x|x|x|x|x|x|x|x| -|netcdf4-python/1.5.5.1-intel-2020b|-|x|x|-|x|x|x|x| -|netcdf4-python/1.5.5.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|netcdf4-python/1.5.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|netcdf4-python/1.5.3-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|netcdf4-python/1.5.3-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|netcdf4-python/1.5.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|netcdf4-python/1.6.4-foss-2023a|x|x|x|x|x|x| +|netcdf4-python/1.6.1-foss-2022a|x|x|x|x|x|x| +|netcdf4-python/1.5.7-intel-2021b|x|x|x|-|x|x| +|netcdf4-python/1.5.7-foss-2021b|x|x|x|x|x|x| +|netcdf4-python/1.5.7-foss-2021a|x|x|x|x|x|x| +|netcdf4-python/1.5.5.1-intel-2020b|-|x|x|-|x|x| +|netcdf4-python/1.5.5.1-fosscuda-2020b|-|-|-|-|x|-| +|netcdf4-python/1.5.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|netcdf4-python/1.5.3-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|netcdf4-python/1.5.3-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|netcdf4-python/1.5.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### netcdf4-python/1.6.4-foss-2023a + +This is a list of extensions included in the module: + +cftime-1.6.2, netcdf4-python-1.6.4 + +### netcdf4-python/1.6.1-foss-2022a + +This is a list of extensions included in the module: + +cftime-1.6.2, netcdf4-python-1.6.1 + +### netcdf4-python/1.5.7-intel-2021b + +This is a list of extensions included in the module: + +cftime-1.5.0, netcdf4-python-1.5.7 + +### netcdf4-python/1.5.7-foss-2021b + +This is a list of extensions included in the module: + +cftime-1.5.0, netcdf4-python-1.5.7 + +### netcdf4-python/1.5.7-foss-2021a + +This is a list of extensions included in the module: + +cftime-1.5.0, netcdf4-python-1.5.7 + +### netcdf4-python/1.5.5.1-intel-2020b + +This is a list of extensions included in the module: + +cftime-1.2.0, netcdf4-python-1.5.5.1 + +### netcdf4-python/1.5.5.1-fosscuda-2020b + +This is a list of extensions included in the module: + +cftime-1.4.1, netcdf4-python-1.5.5.1 + +### netcdf4-python/1.5.3-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +cftime-1.2.0, netcdf4-python-1.5.3 + +### netcdf4-python/1.5.3-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cftime-1.1.1.2, netcdf4-python-1.5.3 + +### netcdf4-python/1.5.3-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +cftime-1.2.0, netcdf4-python-1.5.3 + +### netcdf4-python/1.5.3-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +cftime-1.1.1.2, netcdf4-python-1.5.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nettle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nettle.md index a64a1298df90..77c0390ae4b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nettle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nettle.md @@ -6,6 +6,10 @@ hide: nettle ====== + +Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space. + +https://www.lysator.liu.se/~nisse/nettle/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which nettle installations are available per HPC-UGent To start using nettle, load one of these modules using a `module load` command like: ```shell -module load nettle/3.8.1-GCCcore-12.2.0 +module load nettle/3.9.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nettle/3.8.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|nettle/3.8-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|nettle/3.7.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|nettle/3.7.2-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|nettle/3.6-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|nettle/3.6-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|nettle/3.5.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|nettle/3.4.1-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nettle/3.9.1-GCCcore-12.3.0|x|x|x|x|x|x| +|nettle/3.8.1-GCCcore-12.2.0|x|x|x|x|x|x| +|nettle/3.8-GCCcore-11.3.0|x|x|x|x|x|x| +|nettle/3.7.3-GCCcore-11.2.0|x|x|x|x|x|x| +|nettle/3.7.2-GCCcore-10.3.0|x|x|x|x|x|x| +|nettle/3.6-GCCcore-10.2.0|x|x|x|x|x|x| +|nettle/3.6-GCCcore-9.3.0|-|x|x|-|x|x| +|nettle/3.5.1-GCCcore-8.3.0|x|x|x|-|x|x| +|nettle/3.4.1-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/networkx.md b/mkdocs/docs/HPC/only/gent/available_software/detail/networkx.md index cb459e6044bc..6b30736c2b29 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/networkx.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/networkx.md @@ -6,6 +6,10 @@ hide: networkx ======== + +NetworkX is a Python package for the creation, manipulation,and study of the structure, dynamics, and functions of complex networks. + +https://pypi.python.org/pypi/networkx # Available modules @@ -14,22 +18,23 @@ The overview below shows which networkx installations are available per HPC-UGen To start using networkx, load one of these modules using a `module load` command like: ```shell -module load networkx/3.0-gfbf-2022b +module load networkx/3.1-gfbf-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|networkx/3.0-gfbf-2022b|x|x|x|x|x|x|x|x| -|networkx/3.0-foss-2022b|x|x|x|x|x|x|x|x| -|networkx/2.8.4-intel-2022a|x|x|x|x|x|x|x|x| -|networkx/2.8.4-foss-2022a|x|x|x|x|x|x|x|x| -|networkx/2.6.3-foss-2021b|x|x|x|x|x|x|x|x| -|networkx/2.5.1-foss-2021a|x|x|x|x|x|x|x|x| -|networkx/2.5-fosscuda-2020b|x|-|-|-|x|-|-|-| -|networkx/2.5-foss-2020b|-|x|x|x|x|x|x|x| -|networkx/2.4-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|networkx/2.4-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|networkx/2.4-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|networkx/2.4-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|networkx/3.1-gfbf-2023a|x|x|x|x|x|x| +|networkx/3.0-gfbf-2022b|x|x|x|x|x|x| +|networkx/3.0-foss-2022b|x|x|x|x|x|x| +|networkx/2.8.4-intel-2022a|x|x|x|x|x|x| +|networkx/2.8.4-foss-2022a|x|x|x|x|x|x| +|networkx/2.6.3-foss-2021b|x|x|x|x|x|x| +|networkx/2.5.1-foss-2021a|x|x|x|x|x|x| +|networkx/2.5-fosscuda-2020b|x|-|-|-|x|-| +|networkx/2.5-foss-2020b|-|x|x|x|x|x| +|networkx/2.4-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|networkx/2.4-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|networkx/2.4-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|networkx/2.4-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp2.md index 6331b4454d51..64a1ceb438bc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp2.md @@ -6,6 +6,10 @@ hide: nghttp2 ======= + +This is an implementation of the Hypertext Transfer Protocol version 2 in C.The framing layer of HTTP/2 is implemented as a reusable C library. On top of that, we have implemented an HTTP/2 client, server and proxy. We have also developed load test and benchmarking tools for HTTP/2.An HPACK encoder and decoder are available as a public API. + +https://github.com/nghttp2/nghttp2 # Available modules @@ -17,8 +21,8 @@ To start using nghttp2, load one of these modules using a `module load` command module load nghttp2/1.48.0-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nghttp2/1.48.0-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nghttp2/1.48.0-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp3.md index 6d23a54f4808..d06ba44703ea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nghttp3.md @@ -6,6 +6,10 @@ hide: nghttp3 ======= + +nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 QPACK in C.It does not depend on any particular QUIC transport implementation. + +https://github.com/ngtcp2/nghttp3 # Available modules @@ -17,8 +21,8 @@ To start using nghttp3, load one of these modules using a `module load` command module load nghttp3/0.6.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nghttp3/0.6.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nghttp3/0.6.0-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nglview.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nglview.md index 32a212c430fa..0ef6b0908583 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nglview.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nglview.md @@ -6,6 +6,10 @@ hide: nglview ======= + +IPython widget to interactively view molecular structures and trajectories. + +https://github.com/arose/nglview # Available modules @@ -17,8 +21,15 @@ To start using nglview, load one of these modules using a `module load` command module load nglview/2.7.7-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nglview/2.7.7-intel-2020a-Python-3.8.2|x|x|x|x|x|x| + + +### nglview/2.7.7-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nglview/2.7.7-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| +nglview-2.7.7, widgetsnbextension-3.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ngtcp2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ngtcp2.md index 52838710ea3e..6e791efd559b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ngtcp2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ngtcp2.md @@ -6,6 +6,10 @@ hide: ngtcp2 ====== + +'Call it TCP/2. One More Time.'ngtcp2 project is an effort to implement RFC9000 QUIC protocol. + +https://github.com/ngtcp2/ngtcp2 # Available modules @@ -17,8 +21,8 @@ To start using ngtcp2, load one of these modules using a `module load` command l module load ngtcp2/0.7.0-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ngtcp2/0.7.0-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ngtcp2/0.7.0-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nichenetr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nichenetr.md index 20344563a9a2..4c3719d97e52 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nichenetr.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nichenetr.md @@ -6,6 +6,10 @@ hide: nichenetr ========= + +R implementation of the NicheNet method, to predict active ligand-target links between interacting cells + +https://github.com/saeyslab/nichenetr # Available modules @@ -14,11 +18,12 @@ The overview below shows which nichenetr installations are available per HPC-UGe To start using nichenetr, load one of these modules using a `module load` command like: ```shell -module load nichenetr/1.1.1-20230223-foss-2022a-R-4.2.1 +module load nichenetr/2.0.4-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nichenetr/1.1.1-20230223-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nichenetr/2.0.4-foss-2022b-R-4.2.2|x|x|x|x|x|x| +|nichenetr/1.1.1-20230223-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nlohmann_json.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nlohmann_json.md index 54562a33479b..2cfee645fa40 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nlohmann_json.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nlohmann_json.md @@ -6,6 +6,10 @@ hide: nlohmann_json ============= + +JSON for Modern C++ + +https://github.com/nlohmann/json # Available modules @@ -14,12 +18,13 @@ The overview below shows which nlohmann_json installations are available per HPC To start using nlohmann_json, load one of these modules using a `module load` command like: ```shell -module load nlohmann_json/3.11.2-GCCcore-12.2.0 +module load nlohmann_json/3.11.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nlohmann_json/3.11.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|nlohmann_json/3.10.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nlohmann_json/3.11.2-GCCcore-12.3.0|x|x|x|x|x|x| +|nlohmann_json/3.11.2-GCCcore-12.2.0|x|x|x|x|x|x| +|nlohmann_json/3.10.5-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nnU-Net.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nnU-Net.md index d3c302df3144..75b856f1399a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nnU-Net.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nnU-Net.md @@ -6,6 +6,10 @@ hide: nnU-Net ======= + +nnU-Net is the first segmentation method that is designed to deal with the dataset diversity found in the domain It condenses and automates the keys decisions for designing a successful segmentation pipeline for any given dataset. + +https://github.com/MIC-DKFZ/nnUNet # Available modules @@ -17,9 +21,22 @@ To start using nnU-Net, load one of these modules using a `module load` command module load nnU-Net/1.7.0-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nnU-Net/1.7.0-fosscuda-2020b|x|-|-|-|x|-| +|nnU-Net/1.7.0-foss-2020b|-|x|x|x|x|x| + + +### nnU-Net/1.7.0-fosscuda-2020b + +This is a list of extensions included in the module: + +batchgenerators-0.23, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, immutabledict-2.1.0, linecache2-1.0.0, ml_collections-0.1.0, nnunet-1.7.0, tifffile-2021.8.30, traceback2-1.4.0, unittest2-1.1.0 + +### nnU-Net/1.7.0-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nnU-Net/1.7.0-fosscuda-2020b|x|-|-|-|x|-|-|-| -|nnU-Net/1.7.0-foss-2020b|-|x|x|x|x|x|x|x| +batchgenerators-0.23, contextlib2-21.6.0, dm-haiku-0.0.4, dm-tree-0.1.6, immutabledict-2.1.0, linecache2-1.0.0, ml_collections-0.1.0, nnunet-1.7.0, tifffile-2021.8.30, traceback2-1.4.0, unittest2-1.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nodejs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nodejs.md index 60c3f6d713dc..467f42ff080d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nodejs.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nodejs.md @@ -6,6 +6,10 @@ hide: nodejs ====== + +Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices. + +https://nodejs.org # Available modules @@ -14,16 +18,17 @@ The overview below shows which nodejs installations are available per HPC-UGent To start using nodejs, load one of these modules using a `module load` command like: ```shell -module load nodejs/18.12.1-GCCcore-12.2.0 +module load nodejs/18.17.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nodejs/18.12.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|nodejs/16.15.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|nodejs/14.17.6-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|nodejs/14.17.0-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|nodejs/12.19.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|nodejs/12.16.1-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nodejs/18.17.1-GCCcore-12.3.0|x|x|x|x|x|x| +|nodejs/18.12.1-GCCcore-12.2.0|x|x|x|x|x|x| +|nodejs/16.15.1-GCCcore-11.3.0|x|x|x|x|x|x| +|nodejs/14.17.6-GCCcore-11.2.0|x|x|x|x|x|x| +|nodejs/14.17.0-GCCcore-10.3.0|x|x|x|x|x|x| +|nodejs/12.19.0-GCCcore-10.2.0|x|x|x|x|x|x| +|nodejs/12.16.1-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/noise.md b/mkdocs/docs/HPC/only/gent/available_software/detail/noise.md new file mode 100644 index 000000000000..17b90accd663 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/noise.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +noise +===== + + +Native-code and shader implementations of Perlin noise for Python + +https://github.com/caseman/noise +# Available modules + + +The overview below shows which noise installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using noise, load one of these modules using a `module load` command like: + +```shell +module load noise/1.2.2-gfbf-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|noise/1.2.2-gfbf-2023a|x|x|x|x|x|x| + + +### noise/1.2.2-gfbf-2023a + +This is a list of extensions included in the module: + +noise-1.2.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nsync.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nsync.md index 5d80fc6dd7dc..455cb8676607 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nsync.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nsync.md @@ -6,6 +6,10 @@ hide: nsync ===== + +nsync is a C library that exports various synchronization primitives, such as mutexes + +https://github.com/google/nsync # Available modules @@ -14,16 +18,18 @@ The overview below shows which nsync installations are available per HPC-UGent T To start using nsync, load one of these modules using a `module load` command like: ```shell -module load nsync/1.25.0-GCCcore-11.3.0 +module load nsync/1.26.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nsync/1.25.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|nsync/1.24.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|nsync/1.24.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|nsync/1.24.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|nsync/1.24.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|nsync/1.24.0-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nsync/1.26.0-GCCcore-12.3.0|x|x|x|x|x|x| +|nsync/1.26.0-GCCcore-12.2.0|x|x|x|x|x|x| +|nsync/1.25.0-GCCcore-11.3.0|x|x|x|x|x|x| +|nsync/1.24.0-GCCcore-11.2.0|x|x|x|x|x|x| +|nsync/1.24.0-GCCcore-10.3.0|x|x|x|x|x|x| +|nsync/1.24.0-GCCcore-10.2.0|x|x|x|x|x|x| +|nsync/1.24.0-GCCcore-9.3.0|-|x|x|-|x|x| +|nsync/1.24.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ntCard.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ntCard.md index 5636b8728ce5..1fa436029048 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ntCard.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ntCard.md @@ -6,6 +6,10 @@ hide: ntCard ====== + +ntCard is a streaming algorithm for estimating the frequencies of k-mers in genomics datasets. + +https://www.bcgsc.ca/resources/software/ntcard # Available modules @@ -14,11 +18,12 @@ The overview below shows which ntCard installations are available per HPC-UGent To start using ntCard, load one of these modules using a `module load` command like: ```shell -module load ntCard/1.2.1-GCC-8.3.0 +module load ntCard/1.2.2-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ntCard/1.2.1-GCC-8.3.0|-|x|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ntCard/1.2.2-GCC-12.3.0|x|x|x|x|x|x| +|ntCard/1.2.1-GCC-8.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/num2words.md b/mkdocs/docs/HPC/only/gent/available_software/detail/num2words.md index f40bc58f6fd8..d75ad640cd8f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/num2words.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/num2words.md @@ -6,6 +6,10 @@ hide: num2words ========= + +Modules to convert numbers to words. 42 --> forty-two + +https://github.com/savoirfairelinux/num2words # Available modules @@ -17,8 +21,8 @@ To start using num2words, load one of these modules using a `module load` comman module load num2words/0.5.10-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|num2words/0.5.10-GCCcore-10.3.0|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|num2words/0.5.10-GCCcore-10.3.0|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/numactl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/numactl.md index fcfeed6c9dcc..4349e154717a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/numactl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/numactl.md @@ -6,6 +6,10 @@ hide: numactl ======= + +The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program. + +https://github.com/numactl/numactl # Available modules @@ -14,18 +18,19 @@ The overview below shows which numactl installations are available per HPC-UGent To start using numactl, load one of these modules using a `module load` command like: ```shell -module load numactl/2.0.16-GCCcore-12.3.0 +module load numactl/2.0.16-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|numactl/2.0.16-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|numactl/2.0.16-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|numactl/2.0.14-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|numactl/2.0.14-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|numactl/2.0.14-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|numactl/2.0.13-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|numactl/2.0.13-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|numactl/2.0.12-GCCcore-8.3.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|numactl/2.0.16-GCCcore-13.2.0|x|x|x|x|x|x| +|numactl/2.0.16-GCCcore-12.3.0|x|x|x|x|x|x| +|numactl/2.0.16-GCCcore-12.2.0|x|x|x|x|x|x| +|numactl/2.0.14-GCCcore-11.3.0|x|x|x|x|x|x| +|numactl/2.0.14-GCCcore-11.2.0|x|x|x|x|x|x| +|numactl/2.0.14-GCCcore-10.3.0|x|x|x|x|x|x| +|numactl/2.0.13-GCCcore-10.2.0|x|x|x|x|x|x| +|numactl/2.0.13-GCCcore-9.3.0|x|x|x|x|x|x| +|numactl/2.0.12-GCCcore-8.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/numba.md b/mkdocs/docs/HPC/only/gent/available_software/detail/numba.md index 2e0c94ca9370..fefcb119c5be 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/numba.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/numba.md @@ -6,6 +6,10 @@ hide: numba ===== + +Numba is an Open Source NumPy-aware optimizing compiler forPython sponsored by Continuum Analytics, Inc. It uses the remarkable LLVMcompiler infrastructure to compile Python syntax to machine code. + +https://numba.pydata.org/ # Available modules @@ -14,24 +18,123 @@ The overview below shows which numba installations are available per HPC-UGent T To start using numba, load one of these modules using a `module load` command like: ```shell -module load numba/0.56.4-foss-2022a-CUDA-11.7.0 +module load numba/0.58.1-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|numba/0.56.4-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|numba/0.56.4-foss-2022a|x|x|x|x|x|x|x|x| -|numba/0.54.1-intel-2021b|x|x|x|-|x|x|x|x| -|numba/0.54.1-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-|-|-| -|numba/0.54.1-foss-2021b|x|x|x|x|x|x|x|x| -|numba/0.53.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|numba/0.53.1-foss-2021a|x|x|x|x|x|x|x|x| -|numba/0.53.1-foss-2020b|-|x|x|x|x|x|x|x| -|numba/0.52.0-intel-2020b|-|x|x|-|x|x|x|x| -|numba/0.52.0-fosscuda-2020b|-|-|-|-|x|-|-|-| -|numba/0.52.0-foss-2020b|-|x|x|x|x|x|x|x| -|numba/0.50.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|numba/0.50.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|numba/0.47.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|numba/0.58.1-foss-2023a|x|x|x|x|x|x| +|numba/0.58.1-foss-2022b|x|x|x|x|x|x| +|numba/0.56.4-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|numba/0.56.4-foss-2022a|x|x|x|x|x|x| +|numba/0.54.1-intel-2021b|x|x|x|-|x|x| +|numba/0.54.1-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-| +|numba/0.54.1-foss-2021b|x|x|x|x|x|x| +|numba/0.53.1-fosscuda-2020b|-|-|-|-|x|-| +|numba/0.53.1-foss-2021a|x|x|x|x|x|x| +|numba/0.53.1-foss-2020b|-|x|x|x|x|x| +|numba/0.52.0-intel-2020b|-|x|x|-|x|x| +|numba/0.52.0-fosscuda-2020b|-|-|-|-|x|-| +|numba/0.52.0-foss-2020b|-|x|x|x|x|x| +|numba/0.50.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|numba/0.50.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|numba/0.47.0-foss-2019b-Python-3.7.4|x|x|x|-|x|x| + + +### numba/0.58.1-foss-2023a + +This is a list of extensions included in the module: + +llvmlite-0.41.1, numba-0.58.1 + +### numba/0.58.1-foss-2022b + +This is a list of extensions included in the module: + +llvmlite-0.41.1, numba-0.58.1 + +### numba/0.56.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +llvmlite-0.39.1, numba-0.56.4 + +### numba/0.56.4-foss-2022a + +This is a list of extensions included in the module: + +llvmlite-0.39.1, numba-0.56.4 + +### numba/0.54.1-intel-2021b + +This is a list of extensions included in the module: + +llvmlite-0.37.0, numba-0.54.1 + +### numba/0.54.1-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +llvmlite-0.37.0, numba-0.54.1 + +### numba/0.54.1-foss-2021b + +This is a list of extensions included in the module: + +llvmlite-0.37.0, numba-0.54.1 + +### numba/0.53.1-fosscuda-2020b + +This is a list of extensions included in the module: + +llvmlite-0.36.0, numba-0.53.1 + +### numba/0.53.1-foss-2021a + +This is a list of extensions included in the module: + +llvmlite-0.36.0, numba-0.53.1 + +### numba/0.53.1-foss-2020b + +This is a list of extensions included in the module: + +llvmlite-0.36.0, numba-0.53.1 + +### numba/0.52.0-intel-2020b + +This is a list of extensions included in the module: + +llvmlite-0.35.0, numba-0.52.0 + +### numba/0.52.0-fosscuda-2020b + +This is a list of extensions included in the module: + +llvmlite-0.35.0, numba-0.52.0 + +### numba/0.52.0-foss-2020b + +This is a list of extensions included in the module: + +llvmlite-0.35.0, numba-0.52.0 + +### numba/0.50.0-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +llvmlite-0.33.0, numba-0.50.0 + +### numba/0.50.0-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +llvmlite-0.33.0, numba-0.50.0 + +### numba/0.47.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +llvmlite-0.31.0, numba-0.47.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/numexpr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/numexpr.md index 92433eab0a69..1e0a7c849fc7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/numexpr.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/numexpr.md @@ -6,6 +6,10 @@ hide: numexpr ======= + +The numexpr package evaluates multiple-operator array expressions many times faster than NumPy can. It accepts the expression as a string, analyzes it, rewrites it more efficiently, and compiles it on the fly into code for its internal virtual machine (VM). Due to its integrated just-in-time (JIT) compiler, it does not require a compiler at runtime. + +https://numexpr.readthedocs.io/en/latest/ # Available modules @@ -17,11 +21,11 @@ To start using numexpr, load one of these modules using a `module load` command module load numexpr/2.7.1-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|numexpr/2.7.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|numexpr/2.7.1-intel-2019b-Python-2.7.16|-|x|-|-|-|x|-|x| -|numexpr/2.7.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|numexpr/2.7.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|numexpr/2.7.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|numexpr/2.7.1-intel-2019b-Python-2.7.16|-|x|-|-|-|x| +|numexpr/2.7.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|numexpr/2.7.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/nvtop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/nvtop.md index 790ba138061b..6864461a1854 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/nvtop.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/nvtop.md @@ -6,6 +6,10 @@ hide: nvtop ===== + +htop-like GPU usage monitor + +https://github.com/Syllo/nvtop # Available modules @@ -17,8 +21,8 @@ To start using nvtop, load one of these modules using a `module load` command li module load nvtop/1.2.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|nvtop/1.2.1-GCCcore-10.3.0|x|-|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|nvtop/1.2.1-GCCcore-10.3.0|x|-|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/olaFlow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/olaFlow.md index 0217a1454b17..7505ebff75e5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/olaFlow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/olaFlow.md @@ -6,6 +6,10 @@ hide: olaFlow ======= + +olaFlow CFD Suite is a free and open source project committed to bringing the latestadvances for the simulation of wave dynamics to the OpenFOAM® and FOAM-extend communities. + +https://olaflow.github.io/ # Available modules @@ -17,8 +21,8 @@ To start using olaFlow, load one of these modules using a `module load` command module load olaFlow/20210820-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|olaFlow/20210820-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|olaFlow/20210820-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/olego.md b/mkdocs/docs/HPC/only/gent/available_software/detail/olego.md index 5fecc2b323f1..b32df5b4d311 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/olego.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/olego.md @@ -6,6 +6,10 @@ hide: olego ===== + +OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adoptsa seed-and-extend scheme, and does not rely on a separate external mapper. + +https://github.com/chaolinzhanglab/olego # Available modules @@ -17,8 +21,8 @@ To start using olego, load one of these modules using a `module load` command li module load olego/1.1.9-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|olego/1.1.9-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|olego/1.1.9-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/onedrive.md b/mkdocs/docs/HPC/only/gent/available_software/detail/onedrive.md index 85c92c640af4..580cd0b0285e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/onedrive.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/onedrive.md @@ -6,6 +6,10 @@ hide: onedrive ======== + +A free Microsoft OneDrive Client which supports OneDrive Personal, OneDrive for Business,OneDrive for Office365 and SharePoint. + +https://abraunegg.github.io/ # Available modules @@ -17,8 +21,8 @@ To start using onedrive, load one of these modules using a `module load` command module load onedrive/2.4.21-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|onedrive/2.4.21-GCCcore-11.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|onedrive/2.4.21-GCCcore-11.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ont-fast5-api.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ont-fast5-api.md index 866d135baf82..32f84041dd24 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ont-fast5-api.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ont-fast5-api.md @@ -6,6 +6,10 @@ hide: ont-fast5-api ============= + +ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore .fast5 file format. + +https://github.com/nanoporetech/ont_fast5_api # Available modules @@ -17,14 +21,57 @@ To start using ont-fast5-api, load one of these modules using a `module load` co module load ont-fast5-api/4.1.1-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ont-fast5-api/4.1.1-foss-2022b|x|x|x|x|x|x|x|x| -|ont-fast5-api/4.1.1-foss-2022a|x|x|x|x|x|x|x|x| -|ont-fast5-api/4.0.2-foss-2021b|x|x|x|-|x|x|x|x| -|ont-fast5-api/4.0.0-foss-2021a|x|x|x|-|x|x|x|x| -|ont-fast5-api/3.3.0-fosscuda-2020b|-|-|-|-|x|-|-|-| -|ont-fast5-api/3.3.0-foss-2020b|-|x|x|x|x|x|x|x| -|ont-fast5-api/3.3.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ont-fast5-api/4.1.1-foss-2022b|x|x|x|x|x|x| +|ont-fast5-api/4.1.1-foss-2022a|x|x|x|x|x|x| +|ont-fast5-api/4.0.2-foss-2021b|x|x|x|-|x|x| +|ont-fast5-api/4.0.0-foss-2021a|x|x|x|-|x|x| +|ont-fast5-api/3.3.0-fosscuda-2020b|-|-|-|-|x|-| +|ont-fast5-api/3.3.0-foss-2020b|-|x|x|x|x|x| +|ont-fast5-api/3.3.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### ont-fast5-api/4.1.1-foss-2022b + +This is a list of extensions included in the module: + +ont-fast5-api-4.1.1, progressbar33-2.4 + +### ont-fast5-api/4.1.1-foss-2022a + +This is a list of extensions included in the module: + +ont-fast5-api-4.1.1, progressbar33-2.4 + +### ont-fast5-api/4.0.2-foss-2021b + +This is a list of extensions included in the module: + +ont-fast5-api-4.0.2, progressbar33-2.4 + +### ont-fast5-api/4.0.0-foss-2021a + +This is a list of extensions included in the module: + +ont-fast5-api-4.0.0, progressbar33-2.4 + +### ont-fast5-api/3.3.0-fosscuda-2020b + +This is a list of extensions included in the module: + +ont-fast5-api-3.3.0, progressbar33-2.4 + +### ont-fast5-api/3.3.0-foss-2020b + +This is a list of extensions included in the module: + +ont-fast5-api-3.3.0, progressbar33-2.4 + +### ont-fast5-api/3.3.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +ont-fast5-api-3.3.0, progressbar33-2.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/openCARP.md b/mkdocs/docs/HPC/only/gent/available_software/detail/openCARP.md index a23c57ef8a3b..1631ca88c097 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/openCARP.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/openCARP.md @@ -6,6 +6,10 @@ hide: openCARP ======== + +openCARP is an open cardiac electrophysiology simulator for in-silico experiments. + +https://opencarp.org # Available modules @@ -17,9 +21,9 @@ To start using openCARP, load one of these modules using a `module load` command module load openCARP/6.0-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|openCARP/6.0-foss-2020b|-|x|x|x|x|x|x|x| -|openCARP/3.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|openCARP/6.0-foss-2020b|-|x|x|x|x|x| +|openCARP/3.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/openkim-models.md b/mkdocs/docs/HPC/only/gent/available_software/detail/openkim-models.md index 5f031cdba756..ed4ada7346a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/openkim-models.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/openkim-models.md @@ -6,6 +6,10 @@ hide: openkim-models ============== + +Open Knowledgebase of Interatomic Models.OpenKIM is an API and a collection of interatomic models (potentials) foratomistic simulations. It is a library that can be used by simulation programsto get access to the models in the OpenKIM database.This EasyBuild installs the models. The API itself is in the kim-apipackage. + +https://openkim.org/ # Available modules @@ -17,9 +21,9 @@ To start using openkim-models, load one of these modules using a `module load` c module load openkim-models/20190725-intel-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|openkim-models/20190725-intel-2019b|-|x|x|-|x|x|-|x| -|openkim-models/20190725-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|openkim-models/20190725-intel-2019b|-|x|x|-|x|x| +|openkim-models/20190725-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/openpyxl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/openpyxl.md index 4331ceaf56b6..26fc15dbb796 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/openpyxl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/openpyxl.md @@ -6,6 +6,10 @@ hide: openpyxl ======== + +A Python library to read/write Excel 2010 xlsx/xlsm files + +https://openpyxl.readthedocs.io # Available modules @@ -14,15 +18,60 @@ The overview below shows which openpyxl installations are available per HPC-UGen To start using openpyxl, load one of these modules using a `module load` command like: ```shell -module load openpyxl/3.1.2-GCCcore-12.2.0 +module load openpyxl/3.1.2-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|openpyxl/3.1.2-GCCcore-13.2.0|x|x|x|x|x|x| +|openpyxl/3.1.2-GCCcore-12.3.0|x|x|x|x|x|x| +|openpyxl/3.1.2-GCCcore-12.2.0|x|x|x|x|x|x| +|openpyxl/3.0.10-GCCcore-11.3.0|x|x|x|x|x|x| +|openpyxl/3.0.9-GCCcore-11.2.0|x|x|x|x|x|x| +|openpyxl/3.0.7-GCCcore-10.3.0|x|x|x|x|x|x| +|openpyxl/2.6.4-GCCcore-8.3.0-Python-2.7.16|-|x|x|-|x|x| + + +### openpyxl/3.1.2-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.1.2 + +### openpyxl/3.1.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.1.2 + +### openpyxl/3.1.2-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.1.2 + +### openpyxl/3.0.10-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.0.10 + +### openpyxl/3.0.9-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.0.9 + +### openpyxl/3.0.7-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +et_xmlfile-1.1.0, jdcal-1.4.1, openpyxl-3.0.7 + +### openpyxl/2.6.4-GCCcore-8.3.0-Python-2.7.16 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|openpyxl/3.1.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|openpyxl/3.0.10-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|openpyxl/3.0.9-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|openpyxl/3.0.7-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|openpyxl/2.6.4-GCCcore-8.3.0-Python-2.7.16|-|x|x|-|x|x|-|x| +et_xmlfile-1.0.1, jdcal-1.4.1, openpyxl-2.6.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/openslide-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/openslide-python.md index b4633895d792..bb484b855bcd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/openslide-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/openslide-python.md @@ -6,6 +6,10 @@ hide: openslide-python ================ + +OpenSlide Python is a Python interface to the OpenSlide library. + +https://github.com/openslide/openslide-python # Available modules @@ -14,12 +18,13 @@ The overview below shows which openslide-python installations are available per To start using openslide-python, load one of these modules using a `module load` command like: ```shell -module load openslide-python/1.1.2-GCCcore-11.2.0 +module load openslide-python/1.2.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|openslide-python/1.1.2-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|openslide-python/1.1.2-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|openslide-python/1.2.0-GCCcore-11.3.0|x|-|x|-|x|-| +|openslide-python/1.1.2-GCCcore-11.2.0|x|x|x|-|x|x| +|openslide-python/1.1.2-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/orca.md b/mkdocs/docs/HPC/only/gent/available_software/detail/orca.md index c24a35dd1156..c8ff75f04bc3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/orca.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/orca.md @@ -6,6 +6,10 @@ hide: orca ==== + +Orca is an Electron app that generates images and reports of Plotly things like plotly.js graphs, dash apps, dashboards from the command line. + +https://github.com/plotly/orca # Available modules @@ -17,9 +21,9 @@ To start using orca, load one of these modules using a `module load` command lik module load orca/1.3.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|orca/1.3.1-GCCcore-10.2.0|-|x|-|-|-|-|-|-| -|orca/1.3.0-GCCcore-8.3.0|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|orca/1.3.1-GCCcore-10.2.0|-|x|-|-|-|-| +|orca/1.3.0-GCCcore-8.3.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/p11-kit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/p11-kit.md index 62cf5f20a088..34ae53f47716 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/p11-kit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/p11-kit.md @@ -6,6 +6,10 @@ hide: p11-kit ======= + +Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process. + +https://p11-glue.freedesktop.org/p11-kit.html # Available modules @@ -17,9 +21,9 @@ To start using p11-kit, load one of these modules using a `module load` command module load p11-kit/0.24.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|p11-kit/0.24.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|p11-kit/0.24.0-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|p11-kit/0.24.1-GCCcore-11.2.0|x|x|x|x|x|x| +|p11-kit/0.24.0-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/p4est.md b/mkdocs/docs/HPC/only/gent/available_software/detail/p4est.md index c93271887f9c..70ec1f6ebaff 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/p4est.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/p4est.md @@ -6,6 +6,10 @@ hide: p4est ===== + +p4est is a C library to manage a collection (a forest) of multipleconnected adaptive quadtrees or octrees in parallel. + +https://www.p4est.org # Available modules @@ -17,8 +21,8 @@ To start using p4est, load one of these modules using a `module load` command li module load p4est/2.8-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|p4est/2.8-foss-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|p4est/2.8-foss-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/p7zip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/p7zip.md index db96f23a5cc8..5a9c01a5c8d1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/p7zip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/p7zip.md @@ -6,6 +6,10 @@ hide: p7zip ===== + +p7zip is a quick port of 7z.exe and 7za.exe (CLI version of7zip) for Unix. 7-Zip is a file archiver with highest compression ratio. + +https://github.com/jinfeihan57/p7zip/ # Available modules @@ -17,8 +21,8 @@ To start using p7zip, load one of these modules using a `module load` command li module load p7zip/17.03-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|p7zip/17.03-GCCcore-10.2.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|p7zip/17.03-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pIRS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pIRS.md index ebc96a6b8948..fdd6ac762704 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pIRS.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pIRS.md @@ -6,6 +6,10 @@ hide: pIRS ==== + +pIRS (profile based Illumina pair-end Reads Simulator) is a program for simulating paired-end readsfrom a reference genome. It is optimized for simulating reads similar to those generated from the Illumina platform. + +https://github.com/galaxy001/pirs # Available modules @@ -17,8 +21,8 @@ To start using pIRS, load one of these modules using a `module load` command lik module load pIRS/2.0.2-gompi-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pIRS/2.0.2-gompi-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pIRS/2.0.2-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/packmol.md b/mkdocs/docs/HPC/only/gent/available_software/detail/packmol.md index b12379e54071..0ef19bde0e12 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/packmol.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/packmol.md @@ -6,6 +6,10 @@ hide: packmol ======= + +Packing Optimization for Molecular Dynamics Simulations + +http://m3g.iqm.unicamp.br/packmol # Available modules @@ -17,8 +21,8 @@ To start using packmol, load one of these modules using a `module load` command module load packmol/v20.2.2-iccifort-2020.1.217 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|packmol/v20.2.2-iccifort-2020.1.217|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|packmol/v20.2.2-iccifort-2020.1.217|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pagmo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pagmo.md index 785bef6d78bc..202ff9377bbd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pagmo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pagmo.md @@ -6,6 +6,10 @@ hide: pagmo ===== + +pagmo is a C++ scientific library for massively parallel optimization. + +https://esa.github.io/pagmo2 # Available modules @@ -17,8 +21,8 @@ To start using pagmo, load one of these modules using a `module load` command li module load pagmo/2.17.0-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pagmo/2.17.0-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pagmo/2.17.0-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pairtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pairtools.md index 82138ad4e129..4f6bacdab42a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pairtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pairtools.md @@ -6,6 +6,10 @@ hide: pairtools ========= + +pairtools is a simple and fast command-line framework to process sequencing data from a Hi-C experiment. + +https://github.com/mirnylab/pairtools # Available modules @@ -17,8 +21,8 @@ To start using pairtools, load one of these modules using a `module load` comman module load pairtools/0.3.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pairtools/0.3.0-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pairtools/0.3.0-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/panaroo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/panaroo.md index 62b8fa0b18c6..9fa4633d1360 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/panaroo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/panaroo.md @@ -6,6 +6,10 @@ hide: panaroo ======= + +A pangenome analysis pipeline. + +https://gtonkinhill.github.io/panaroo/ # Available modules @@ -17,8 +21,15 @@ To start using panaroo, load one of these modules using a `module load` command module load panaroo/1.2.8-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|panaroo/1.2.8-foss-2020b|-|x|x|x|x|x| + + +### panaroo/1.2.8-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|panaroo/1.2.8-foss-2020b|-|x|x|x|x|x|x|x| +argcomplete-1.12.3, argh-0.26.2, gffutils-0.10.1, intbitset-2.4.1, panaroo-1.2.8, sklearn-0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pandas.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pandas.md index 932263d6d966..3e874a5a0d8c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pandas.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pandas.md @@ -6,6 +6,10 @@ hide: pandas ====== + +pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language. + +https://pypi.python.org/pypi/pandas/ # Available modules @@ -17,8 +21,8 @@ To start using pandas, load one of these modules using a `module load` command l module load pandas/1.1.2-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pandas/1.1.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pandas/1.1.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/parallel-fastq-dump.md b/mkdocs/docs/HPC/only/gent/available_software/detail/parallel-fastq-dump.md index d896a2e5c53c..ba80d697f76a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/parallel-fastq-dump.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/parallel-fastq-dump.md @@ -6,6 +6,10 @@ hide: parallel-fastq-dump =================== + +parallel fastq-dump wrapper + +https://github.com/rvalieris/parallel-fastq-dump # Available modules @@ -17,11 +21,11 @@ To start using parallel-fastq-dump, load one of these modules using a `module lo module load parallel-fastq-dump/0.6.7-gompi-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|parallel-fastq-dump/0.6.7-gompi-2022a|x|x|x|x|x|x|x|x| -|parallel-fastq-dump/0.6.7-gompi-2020b|-|x|x|-|x|x|x|x| -|parallel-fastq-dump/0.6.6-GCCcore-9.3.0-SRA-Toolkit-3.0.0-Python-3.8.2|x|x|x|-|x|x|x|x| -|parallel-fastq-dump/0.6.6-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|parallel-fastq-dump/0.6.7-gompi-2022a|x|x|x|x|x|x| +|parallel-fastq-dump/0.6.7-gompi-2020b|-|x|x|-|x|x| +|parallel-fastq-dump/0.6.6-GCCcore-9.3.0-SRA-Toolkit-3.0.0-Python-3.8.2|x|x|x|-|x|x| +|parallel-fastq-dump/0.6.6-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/parallel.md b/mkdocs/docs/HPC/only/gent/available_software/detail/parallel.md index fe3e7825e172..64849b29b6dc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/parallel.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/parallel.md @@ -6,6 +6,10 @@ hide: parallel ======== + +parallel: Build and execute shell commands in parallel + +https://savannah.gnu.org/projects/parallel/ # Available modules @@ -17,14 +21,14 @@ To start using parallel, load one of these modules using a `module load` command module load parallel/20230722-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|parallel/20230722-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|parallel/20220722-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|parallel/20210722-GCCcore-11.2.0|-|x|x|x|x|x|x|x| -|parallel/20210622-GCCcore-10.3.0|-|x|x|x|x|x|x|x| -|parallel/20210322-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|parallel/20200522-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|parallel/20190922-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|parallel/20230722-GCCcore-12.2.0|x|x|x|x|x|x| +|parallel/20220722-GCCcore-11.3.0|x|x|x|x|x|x| +|parallel/20210722-GCCcore-11.2.0|-|x|x|x|x|x| +|parallel/20210622-GCCcore-10.3.0|-|x|x|x|x|x| +|parallel/20210322-GCCcore-10.2.0|-|x|x|x|x|x| +|parallel/20200522-GCCcore-9.3.0|-|x|x|-|x|x| +|parallel/20190922-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/parasail.md b/mkdocs/docs/HPC/only/gent/available_software/detail/parasail.md index 53f937536386..13f36eb67a6a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/parasail.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/parasail.md @@ -6,6 +6,10 @@ hide: parasail ======== + +parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and semi-global pairwise sequence alignment algorithms. + +https://github.com/jeffdaily/parasail # Available modules @@ -17,15 +21,15 @@ To start using parasail, load one of these modules using a `module load` command module load parasail/2.6-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|parasail/2.6-GCC-11.3.0|x|x|x|x|x|x|x|x| -|parasail/2.5-GCC-11.2.0|x|x|x|-|x|x|x|x| -|parasail/2.4.3-GCC-10.3.0|x|x|x|-|x|x|x|x| -|parasail/2.4.3-GCC-10.2.0|-|-|x|-|x|-|-|-| -|parasail/2.4.2-iccifort-2020.1.217|-|x|x|-|x|x|x|x| -|parasail/2.4.1-intel-2019b|-|x|x|-|x|x|-|x| -|parasail/2.4.1-foss-2019b|-|x|-|-|-|-|-|-| -|parasail/2.4.1-GCC-8.3.0|-|-|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|parasail/2.6-GCC-11.3.0|x|x|x|x|x|x| +|parasail/2.5-GCC-11.2.0|x|x|x|-|x|x| +|parasail/2.4.3-GCC-10.3.0|x|x|x|-|x|x| +|parasail/2.4.3-GCC-10.2.0|-|-|x|-|x|-| +|parasail/2.4.2-iccifort-2020.1.217|-|x|x|-|x|x| +|parasail/2.4.1-intel-2019b|-|x|x|-|x|x| +|parasail/2.4.1-foss-2019b|-|x|-|-|-|-| +|parasail/2.4.1-GCC-8.3.0|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/patchelf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/patchelf.md index c1763787da49..677f03b0e876 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/patchelf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/patchelf.md @@ -6,6 +6,10 @@ hide: patchelf ======== + +PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables. + +https://github.com/NixOS/patchelf # Available modules @@ -14,16 +18,18 @@ The overview below shows which patchelf installations are available per HPC-UGen To start using patchelf, load one of these modules using a `module load` command like: ```shell -module load patchelf/0.18.0-GCCcore-12.3.0 +module load patchelf/0.18.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|patchelf/0.18.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|patchelf/0.15.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|patchelf/0.13-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|patchelf/0.12-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|patchelf/0.12-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|patchelf/0.10-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|patchelf/0.18.0-GCCcore-13.2.0|x|x|x|x|x|x| +|patchelf/0.18.0-GCCcore-12.3.0|x|x|x|x|x|x| +|patchelf/0.17.2-GCCcore-12.2.0|x|x|x|x|x|x| +|patchelf/0.15.0-GCCcore-11.3.0|x|x|x|x|x|x| +|patchelf/0.13-GCCcore-11.2.0|x|x|x|x|x|x| +|patchelf/0.12-GCCcore-10.3.0|-|x|x|-|x|x| +|patchelf/0.12-GCCcore-9.3.0|-|x|x|-|x|x| +|patchelf/0.10-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pauvre.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pauvre.md index c2a903529f52..d024a5278142 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pauvre.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pauvre.md @@ -6,6 +6,10 @@ hide: pauvre ====== + +Tools for plotting Oxford Nanopore and other long-read data + +https://github.com/conchoecia/pauvre # Available modules @@ -17,9 +21,9 @@ To start using pauvre, load one of these modules using a `module load` command l module load pauvre/0.1924-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pauvre/0.1924-intel-2020b|-|x|x|-|x|x|x|x| -|pauvre/0.1923-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pauvre/0.1924-intel-2020b|-|x|x|-|x|x| +|pauvre/0.1923-intel-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pblat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pblat.md new file mode 100644 index 000000000000..b94fcde9dabf --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pblat.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +pblat +===== + + +When the query file format is fasta, you can specify many threads to process it. It can reduce run time linearly, and use almost equal memory as the original blat program. This is useful when you blat a big query file to a huge reference like human whole genome sequence. + +https://github.com/icebert/pblat +# Available modules + + +The overview below shows which pblat installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using pblat, load one of these modules using a `module load` command like: + +```shell +module load pblat/2.5.1-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pblat/2.5.1-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pdsh.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pdsh.md index c72a2a1a115d..4e10426ee049 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pdsh.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pdsh.md @@ -6,6 +6,10 @@ hide: pdsh ==== + +A high performance, parallel remote shell utility + +https://github.com/chaos/pdsh # Available modules @@ -17,10 +21,10 @@ To start using pdsh, load one of these modules using a `module load` command lik module load pdsh/2.34-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pdsh/2.34-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|pdsh/2.34-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|pdsh/2.34-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pdsh/2.34-GCCcore-12.3.0|x|x|x|x|x|x| +|pdsh/2.34-GCCcore-12.2.0|x|x|x|x|x|x| +|pdsh/2.34-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/peakdetect.md b/mkdocs/docs/HPC/only/gent/available_software/detail/peakdetect.md index 1c99180da1ba..373b3ac21402 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/peakdetect.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/peakdetect.md @@ -6,6 +6,10 @@ hide: peakdetect ========== + +Simple peak detection library for Python based on Billauer's work and this gist. + +https://github.com/avhn/peakdetect # Available modules @@ -17,8 +21,8 @@ To start using peakdetect, load one of these modules using a `module load` comma module load peakdetect/1.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|peakdetect/1.2-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|peakdetect/1.2-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/petsc4py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/petsc4py.md index 7ca4746403f4..af5d6a6bafea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/petsc4py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/petsc4py.md @@ -6,6 +6,10 @@ hide: petsc4py ======== + +petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation. + +https://bitbucket.org/petsc/petsc4py # Available modules @@ -14,12 +18,13 @@ The overview below shows which petsc4py installations are available per HPC-UGen To start using petsc4py, load one of these modules using a `module load` command like: ```shell -module load petsc4py/3.15.0-foss-2021a +module load petsc4py/3.17.4-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|petsc4py/3.15.0-foss-2021a|-|x|x|-|x|x|x|x| -|petsc4py/3.12.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|petsc4py/3.17.4-foss-2022a|x|x|x|x|x|x| +|petsc4py/3.15.0-foss-2021a|-|x|x|-|x|x| +|petsc4py/3.12.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pftoolsV3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pftoolsV3.md index 7cf747e3df1d..f3ff801a701a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pftoolsV3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pftoolsV3.md @@ -6,6 +6,10 @@ hide: pftoolsV3 ========= + +A suite of tools to build and search generalized profiles (protein and DNA). + +https://github.com/sib-swiss/pftools3 # Available modules @@ -17,8 +21,8 @@ To start using pftoolsV3, load one of these modules using a `module load` comman module load pftoolsV3/3.2.11-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pftoolsV3/3.2.11-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pftoolsV3/3.2.11-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/phonemizer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/phonemizer.md index 12595e443847..06d94a090d8f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/phonemizer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/phonemizer.md @@ -6,6 +6,10 @@ hide: phonemizer ========== + +The phonemizer allows simple phonemization of words and texts in many languages.Provides both the phonemize command-line tool and the Python function phonemizer.phonemize.It is using four backends: espeak, espeak-mbrola, festival and segments. + +https://github.com/bootphon/phonemizer # Available modules @@ -17,8 +21,15 @@ To start using phonemizer, load one of these modules using a `module load` comma module load phonemizer/2.2.1-gompi-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|phonemizer/2.2.1-gompi-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### phonemizer/2.2.1-gompi-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|phonemizer/2.2.1-gompi-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +clldutils-3.5.2, colorlog-4.2.1, csvw-1.8.0, isodate-0.6.0, phonemizer-2.2.1, regex-2020.7.14, rfc3986-1.4.0, segments-2.1.3, uritemplate-3.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md index 7018c2d65090..4593ac1fad61 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/phonopy.md @@ -6,6 +6,10 @@ hide: phonopy ======= + +Phonopy is an open source package of phonon calculations based on the supercell approach. + +https://atztogo.github.io/phonopy/ # Available modules @@ -17,8 +21,8 @@ To start using phonopy, load one of these modules using a `module load` command module load phonopy/2.7.1-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|phonopy/2.7.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|phonopy/2.7.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/phototonic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/phototonic.md index 7965d6b184aa..92e158fe0c20 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/phototonic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/phototonic.md @@ -6,6 +6,10 @@ hide: phototonic ========== + +Phototonic is an image viewer and organizer + +https://github.com/oferkv/phototonic # Available modules @@ -17,8 +21,8 @@ To start using phototonic, load one of these modules using a `module load` comma module load phototonic/2.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|phototonic/2.1-GCCcore-10.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|phototonic/2.1-GCCcore-10.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/phyluce.md b/mkdocs/docs/HPC/only/gent/available_software/detail/phyluce.md new file mode 100644 index 000000000000..67fd08904db5 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/phyluce.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +phyluce +======= + + +phyluce is a software package for working with data generated from sequence capture of UCE (ultra-conserved element) loci, as first published in [BCF2012]. Specifically, phyluce is a suite of programs to:1) assemble raw sequence reads from Illumina platforms into contigs2) determine which contigs represent UCE loci3) filter potentially paralagous UCE loci4) generate different sets of UCE loci across taxa of interest + +https://github.com/faircloth-lab/phyluce +# Available modules + + +The overview below shows which phyluce installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using phyluce, load one of these modules using a `module load` command like: + +```shell +module load phyluce/1.7.3-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|phyluce/1.7.3-foss-2023a|x|x|x|x|x|x| + + +### phyluce/1.7.3-foss-2023a + +This is a list of extensions included in the module: + +phyluce-1.7.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/picard.md b/mkdocs/docs/HPC/only/gent/available_software/detail/picard.md index 190b2895898a..4734ccec3b75 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/picard.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/picard.md @@ -6,6 +6,10 @@ hide: picard ====== + +A set of tools (in Java) for working with next generation sequencing data in the BAM format. + +http://sourceforge.net/projects/picard # Available modules @@ -17,12 +21,12 @@ To start using picard, load one of these modules using a `module load` command l module load picard/2.25.1-Java-11 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|picard/2.25.1-Java-11|x|x|x|x|x|x|x|x| -|picard/2.25.0-Java-11|-|x|x|x|x|x|x|x| -|picard/2.21.6-Java-11|-|x|x|-|x|x|-|x| -|picard/2.21.1-Java-11|-|-|x|-|x|x|-|x| -|picard/2.18.27-Java-1.8|-|-|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|picard/2.25.1-Java-11|x|x|x|x|x|x| +|picard/2.25.0-Java-11|-|x|x|x|x|x| +|picard/2.21.6-Java-11|-|x|x|-|x|x| +|picard/2.21.1-Java-11|-|-|x|-|x|x| +|picard/2.18.27-Java-1.8|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md index 4787f6f66a36..735846a609e1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pigz.md @@ -6,6 +6,10 @@ hide: pigz ==== + +pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries. + +https://zlib.net/pigz/ # Available modules @@ -14,14 +18,15 @@ The overview below shows which pigz installations are available per HPC-UGent Ti To start using pigz, load one of these modules using a `module load` command like: ```shell -module load pigz/2.7-GCCcore-11.3.0 +module load pigz/2.8-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pigz/2.7-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|pigz/2.6-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|pigz/2.6-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|pigz/2.4-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pigz/2.8-GCCcore-12.3.0|x|x|x|x|x|x| +|pigz/2.7-GCCcore-11.3.0|x|x|x|x|x|x| +|pigz/2.6-GCCcore-11.2.0|x|x|x|-|x|x| +|pigz/2.6-GCCcore-10.2.0|-|x|x|x|x|x| +|pigz/2.4-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pixman.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pixman.md index 7877d12d3780..e28b376f114b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pixman.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pixman.md @@ -6,6 +6,10 @@ hide: pixman ====== + +Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server. + +http://www.pixman.org/ # Available modules @@ -14,18 +18,19 @@ The overview below shows which pixman installations are available per HPC-UGent To start using pixman, load one of these modules using a `module load` command like: ```shell -module load pixman/0.42.2-GCCcore-12.2.0 +module load pixman/0.42.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pixman/0.42.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|pixman/0.40.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|pixman/0.40.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|pixman/0.40.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|pixman/0.40.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|pixman/0.38.4-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|pixman/0.38.4-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|pixman/0.38.0-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pixman/0.42.2-GCCcore-12.3.0|x|x|x|x|x|x| +|pixman/0.42.2-GCCcore-12.2.0|x|x|x|x|x|x| +|pixman/0.40.0-GCCcore-11.3.0|x|x|x|x|x|x| +|pixman/0.40.0-GCCcore-11.2.0|x|x|x|x|x|x| +|pixman/0.40.0-GCCcore-10.3.0|x|x|x|x|x|x| +|pixman/0.40.0-GCCcore-10.2.0|x|x|x|x|x|x| +|pixman/0.38.4-GCCcore-9.3.0|x|x|x|x|x|x| +|pixman/0.38.4-GCCcore-8.3.0|x|x|x|-|x|x| +|pixman/0.38.0-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pkg-config.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pkg-config.md index 31154a7c1b02..f0f226d96f85 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pkg-config.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pkg-config.md @@ -6,6 +6,10 @@ hide: pkg-config ========== + +pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries). + +http://www.freedesktop.org/wiki/Software/pkg-config/ # Available modules @@ -17,16 +21,16 @@ To start using pkg-config, load one of these modules using a `module load` comma module load pkg-config/0.29.2-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pkg-config/0.29.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|pkg-config/0.29.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|pkg-config/0.29.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|pkg-config/0.29.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|pkg-config/0.29.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|pkg-config/0.29.2-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|pkg-config/0.29.2-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|pkg-config/0.29.2-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|pkg-config/0.29.2|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pkg-config/0.29.2-GCCcore-12.2.0|x|x|x|x|x|x| +|pkg-config/0.29.2-GCCcore-11.3.0|x|x|x|x|x|x| +|pkg-config/0.29.2-GCCcore-11.2.0|x|x|x|x|x|x| +|pkg-config/0.29.2-GCCcore-10.3.0|x|x|x|x|x|x| +|pkg-config/0.29.2-GCCcore-10.2.0|x|x|x|x|x|x| +|pkg-config/0.29.2-GCCcore-9.3.0|x|x|x|x|x|x| +|pkg-config/0.29.2-GCCcore-8.3.0|x|x|x|-|x|x| +|pkg-config/0.29.2-GCCcore-8.2.0|-|x|-|-|-|-| +|pkg-config/0.29.2|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconf.md index 794073f5bc81..5cc7bdb8fc82 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconf.md @@ -6,6 +6,10 @@ hide: pkgconf ======= + +pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org. + +https://github.com/pkgconf/pkgconf # Available modules @@ -14,15 +18,16 @@ The overview below shows which pkgconf installations are available per HPC-UGent To start using pkgconf, load one of these modules using a `module load` command like: ```shell -module load pkgconf/1.9.5-GCCcore-12.3.0 +module load pkgconf/2.0.3-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pkgconf/1.9.5-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|pkgconf/1.9.3-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|pkgconf/1.8.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|pkgconf/1.8.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|pkgconf/1.8.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pkgconf/2.0.3-GCCcore-13.2.0|x|x|x|x|x|x| +|pkgconf/1.9.5-GCCcore-12.3.0|x|x|x|x|x|x| +|pkgconf/1.9.3-GCCcore-12.2.0|x|x|x|x|x|x| +|pkgconf/1.8.0-GCCcore-11.3.0|x|x|x|x|x|x| +|pkgconf/1.8.0-GCCcore-11.2.0|x|x|x|x|x|x| +|pkgconf/1.8.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconfig.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconfig.md index 5da300cacb6b..69d089492b5b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconfig.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pkgconfig.md @@ -6,6 +6,10 @@ hide: pkgconfig ========= + +pkgconfig is a Python module to interface with the pkg-config command line tool + +https://github.com/matze/pkgconfig # Available modules @@ -14,17 +18,25 @@ The overview below shows which pkgconfig installations are available per HPC-UGe To start using pkgconfig, load one of these modules using a `module load` command like: ```shell -module load pkgconfig/1.5.5-GCCcore-12.2.0-python +module load pkgconfig/1.5.5-GCCcore-12.3.0-python ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pkgconfig/1.5.5-GCCcore-12.2.0-python|x|x|x|x|x|x|x|x| -|pkgconfig/1.5.5-GCCcore-11.3.0-python|x|x|x|x|x|x|x|x| -|pkgconfig/1.5.5-GCCcore-11.2.0-python|x|x|x|x|x|x|x|x| -|pkgconfig/1.5.4-GCCcore-10.3.0-python|x|x|x|x|x|x|x|x| -|pkgconfig/1.5.1-GCCcore-10.2.0-python|x|x|x|x|x|x|x|x| -|pkgconfig/1.5.1-GCCcore-9.3.0-Python-3.8.2|x|x|x|x|x|x|x|x| -|pkgconfig/1.5.1-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pkgconfig/1.5.5-GCCcore-12.3.0-python|x|x|x|x|x|x| +|pkgconfig/1.5.5-GCCcore-12.2.0-python|x|x|x|x|x|x| +|pkgconfig/1.5.5-GCCcore-11.3.0-python|x|x|x|x|x|x| +|pkgconfig/1.5.5-GCCcore-11.2.0-python|x|x|x|x|x|x| +|pkgconfig/1.5.4-GCCcore-10.3.0-python|x|x|x|x|x|x| +|pkgconfig/1.5.1-GCCcore-10.2.0-python|x|x|x|x|x|x| +|pkgconfig/1.5.1-GCCcore-9.3.0-Python-3.8.2|x|x|x|x|x|x| +|pkgconfig/1.5.1-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| + + +### pkgconfig/1.5.1-GCCcore-8.3.0-Python-3.7.4 + +This is a list of extensions included in the module: + +pkgconfig-1.5.1, poetry-0.12.17 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/plot1cell.md b/mkdocs/docs/HPC/only/gent/available_software/detail/plot1cell.md index ad1529a172a1..8d139c328a91 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/plot1cell.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/plot1cell.md @@ -6,6 +6,10 @@ hide: plot1cell ========= + +plot1cell: a package for advanced single cell data visualization + +https://github.com/HaojiaWu/plot1cell # Available modules @@ -14,11 +18,12 @@ The overview below shows which plot1cell installations are available per HPC-UGe To start using plot1cell, load one of these modules using a `module load` command like: ```shell -module load plot1cell/0.0.1-foss-2022a-R-4.2.1 +module load plot1cell/0.0.1-foss-2022b-R-4.2.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|plot1cell/0.0.1-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|plot1cell/0.0.1-foss-2022b-R-4.2.2|x|x|x|x|x|x| +|plot1cell/0.0.1-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/plotly-orca.md b/mkdocs/docs/HPC/only/gent/available_software/detail/plotly-orca.md index 2afac2b478f7..ba9e17d38ee2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/plotly-orca.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/plotly-orca.md @@ -6,6 +6,10 @@ hide: plotly-orca =========== + +Orca is an Electron app that generates images and reports of Plotly things like plotly.js graphs, dash apps, dashboards from the command line. + +https://github.com/plotly/orca # Available modules @@ -17,9 +21,9 @@ To start using plotly-orca, load one of these modules using a `module load` comm module load plotly-orca/1.3.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|plotly-orca/1.3.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|plotly-orca/1.3.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|plotly-orca/1.3.1-GCCcore-10.2.0|-|x|x|x|x|x| +|plotly-orca/1.3.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/plotly.py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/plotly.py.md index f702c4e81f5a..b8a411417dd9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/plotly.py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/plotly.py.md @@ -6,6 +6,10 @@ hide: plotly.py ========= + +An open-source, interactive graphing library for Python + +https://plot.ly/python # Available modules @@ -14,18 +18,74 @@ The overview below shows which plotly.py installations are available per HPC-UGe To start using plotly.py, load one of these modules using a `module load` command like: ```shell -module load plotly.py/5.13.1-GCCcore-12.2.0 +module load plotly.py/5.16.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|plotly.py/5.13.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|plotly.py/5.12.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|plotly.py/5.10.0-GCCcore-11.3.0|x|x|x|-|x|x|x|x| -|plotly.py/5.4.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|plotly.py/5.1.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|plotly.py/4.14.3-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|plotly.py/4.8.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|plotly.py/4.4.1-intel-2019b|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|plotly.py/5.16.0-GCCcore-12.3.0|x|x|x|x|x|x| +|plotly.py/5.13.1-GCCcore-12.2.0|x|x|x|x|x|x| +|plotly.py/5.12.0-GCCcore-11.3.0|x|x|x|x|x|x| +|plotly.py/5.10.0-GCCcore-11.3.0|x|x|x|-|x|x| +|plotly.py/5.4.0-GCCcore-11.2.0|x|x|x|-|x|x| +|plotly.py/5.1.0-GCCcore-10.3.0|x|x|x|-|x|x| +|plotly.py/4.14.3-GCCcore-10.2.0|-|x|x|x|x|x| +|plotly.py/4.8.1-GCCcore-9.3.0|-|x|x|-|x|x| +|plotly.py/4.4.1-intel-2019b|-|x|x|-|x|x| + + +### plotly.py/5.16.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +packaging-23.1, plotly-5.16.0, tenacity-8.2.3 + +### plotly.py/5.13.1-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +plotly-5.13.1, tenacity-8.2.2 + +### plotly.py/5.12.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +plotly-5.12.0, tenacity-8.0.1 + +### plotly.py/5.10.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +plotly-5.10.0, tenacity-8.1.0 + +### plotly.py/5.4.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +plotly-5.4.0, tenacity-8.0.1 + +### plotly.py/5.1.0-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +plotly-5.1.0, tenacity-8.0.1 + +### plotly.py/4.14.3-GCCcore-10.2.0 + +This is a list of extensions included in the module: + +plotly-4.14.3, retrying-1.3.3 + +### plotly.py/4.8.1-GCCcore-9.3.0 + +This is a list of extensions included in the module: + +plotly-4.8.1, retrying-1.3.3 + +### plotly.py/4.4.1-intel-2019b + +This is a list of extensions included in the module: + +plotly-4.4.1, retrying-1.3.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pocl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pocl.md index d2618f1b416f..1870d3ecf122 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pocl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pocl.md @@ -6,6 +6,10 @@ hide: pocl ==== + +Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard + +https://portablecl.org # Available modules @@ -14,16 +18,18 @@ The overview below shows which pocl installations are available per HPC-UGent Ti To start using pocl, load one of these modules using a `module load` command like: ```shell -module load pocl/3.0-GCC-11.3.0 +module load pocl/4.0-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pocl/3.0-GCC-11.3.0|x|x|x|-|x|x|x|x| -|pocl/1.8-GCC-11.3.0|x|x|x|x|x|x|x|x| -|pocl/1.8-GCC-11.2.0|x|x|x|-|x|x|x|x| -|pocl/1.6-gcccuda-2020b|-|-|-|-|x|-|-|-| -|pocl/1.6-GCC-10.2.0|-|x|x|x|x|x|x|x| -|pocl/1.4-gcccuda-2019b|x|-|-|-|x|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pocl/4.0-GCC-12.3.0|x|x|x|x|x|x| +|pocl/3.0-GCC-11.3.0|x|x|x|-|x|x| +|pocl/1.8-GCC-11.3.0-CUDA-11.7.0|x|-|-|-|x|-| +|pocl/1.8-GCC-11.3.0|x|x|x|x|x|x| +|pocl/1.8-GCC-11.2.0|x|x|x|-|x|x| +|pocl/1.6-gcccuda-2020b|-|-|-|-|x|-| +|pocl/1.6-GCC-10.2.0|-|x|x|x|x|x| +|pocl/1.4-gcccuda-2019b|x|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pod5-file-format.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pod5-file-format.md index 4e8432089b15..2a1e30eca102 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pod5-file-format.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pod5-file-format.md @@ -6,6 +6,10 @@ hide: pod5-file-format ================ + +POD5 is a file format for storing nanopore dna data in an easily accessible way. The format is able to be written in a streaming manner which allows a sequencing instrument to directly write the format. + +https://github.com/nanoporetech/pod5-file-format # Available modules @@ -17,8 +21,15 @@ To start using pod5-file-format, load one of these modules using a `module load` module load pod5-file-format/0.1.8-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pod5-file-format/0.1.8-foss-2022a|x|x|x|x|x|x| + + +### pod5-file-format/0.1.8-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pod5-file-format/0.1.8-foss-2022a|x|x|x|x|x|x|x|x| +attrs-22.2.0, iso8601-1.1.0, pod5-0.1.8, vbz_h5py_plugin-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/poetry.md b/mkdocs/docs/HPC/only/gent/available_software/detail/poetry.md index ec0067d589b5..bb9839551bf6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/poetry.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/poetry.md @@ -6,6 +6,10 @@ hide: poetry ====== + +Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere. + +https://python-poetry.org # Available modules @@ -14,12 +18,39 @@ The overview below shows which poetry installations are available per HPC-UGent To start using poetry, load one of these modules using a `module load` command like: ```shell -module load poetry/1.5.1-GCCcore-12.3.0 +module load poetry/1.7.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|poetry/1.7.1-GCCcore-12.3.0|x|x|x|x|x|x| +|poetry/1.6.1-GCCcore-13.2.0|x|x|x|x|x|x| +|poetry/1.5.1-GCCcore-12.3.0|x|x|x|x|x|x| +|poetry/1.0.9-GCCcore-9.3.0-Python-3.8.2|x|x|x|x|x|x| + + +### poetry/1.7.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +attrs-23.2.0, build-1.0.3, CacheControl-0.13.1, certifi-2023.11.17, charset-normalizer-3.3.2, cleo-2.1.0, crashtest-0.4.1, dulwich-0.21.7, fastjsonschema-2.19.1, html5lib-1.1, idna-3.6, importlib_metadata-7.0.1, installer-0.7.0, jaraco.classes-3.3.0, jeepney-0.8.0, jsonschema-4.21.0, jsonschema_specifications-2023.12.1, keyring-24.3.0, lockfile-0.12.2, more-itertools-10.2.0, msgpack-1.0.7, pexpect-4.9.0, pkginfo-1.9.6, platformdirs-3.11.0, poetry-1.7.1, poetry_core-1.8.1, poetry_plugin_export-1.6.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.20.0, rapidfuzz-3.6.1, referencing-0.32.1, requests-2.31.0, requests-toolbelt-1.0.0, rpds_py-0.17.1, SecretStorage-3.3.3, shellingham-1.5.4, six-1.16.0, tomlkit-0.12.3, urllib3-2.1.0, webencodings-0.5.1, zipp-3.17.0 + +### poetry/1.6.1-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +attrs-23.1.0, build-0.10.0, cachecontrol-0.13.1, certifi-2023.7.22, charset-normalizer-3.3.1, cleo-2.0.1, crashtest-0.4.1, dulwich-0.21.6, html5lib-1.1, idna-3.4, importlib_metadata-6.8.0, installer-0.7.0, jaraco.classes-3.3.0, jeepney-0.8.0, jsonschema-4.17.3, keyring-24.2.0, lockfile-0.12.2, more-itertools-10.1.0, msgpack-1.0.7, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.11.0, poetry-1.6.1, poetry_core-1.7.0, poetry_plugin_export-1.5.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.20.0, rapidfuzz-2.15.2, requests-2.31.0, requests-toolbelt-1.0.0, SecretStorage-3.3.3, shellingham-1.5.4, six-1.16.0, tomlkit-0.12.1, urllib3-2.0.7, webencodings-0.5.1, zipp-3.17.0 + +### poetry/1.5.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +attrs-23.1.0, build-0.10.0, CacheControl-0.12.14, certifi-2023.5.7, charset-normalizer-3.1.0, cleo-2.0.1, crashtest-0.4.1, dulwich-0.21.5, html5lib-1.1, idna-3.4, importlib_metadata-6.7.0, installer-0.7.0, jaraco.classes-3.2.3, jeepney-0.8.0, jsonschema-4.17.3, keyring-23.13.1, lockfile-0.12.2, more-itertools-9.1.0, msgpack-1.0.5, pexpect-4.8.0, pkginfo-1.9.6, platformdirs-3.8.0, poetry-1.5.1, poetry_core-1.6.1, poetry_plugin_export-1.4.0, ptyprocess-0.7.0, pyproject_hooks-1.0.0, pyrsistent-0.19.3, rapidfuzz-2.15.1, requests-2.31.0, requests-toolbelt-1.0.0, SecretStorage-3.3.3, shellingham-1.5.0, six-1.16.0, tomlkit-0.11.8, urllib3-1.26.16, webencodings-0.5.1, zipp-3.15.0 + +### poetry/1.0.9-GCCcore-9.3.0-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|poetry/1.5.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|poetry/1.0.9-GCCcore-9.3.0-Python-3.8.2|x|x|x|x|x|x|x|x| +CacheControl-0.12.6, cachy-0.3.0, cleo-0.7.6, clikit-0.4.3, crashtest-0.3.0, html5lib-1.1, intreehooks-1.0, jeepney-0.4.3, jsonschema-3.2.0, keyring-20.0.1, keyrings.alt-3.4.0, lockfile-0.12.2, msgpack-1.0.0, pastel-0.2.0, pexpect-4.8.0, pkginfo-1.5.0.1, poetry-1.0.9, ptyprocess-0.6.0, pylev-1.3.0, pyrsistent-0.14.11, pytoml-0.1.21, requests-toolbelt-0.8.0, SecretStorage-3.1.2, shellingham-1.3.2, tomlkit-0.5.11, webencodings-0.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md b/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md index 7124cddb9589..fc915c2ccbc6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/polars.md @@ -6,6 +6,10 @@ hide: polars ====== + +Lightning-fast DataFrame library for Rust and Python. + +https://pola.rs/ # Available modules @@ -17,8 +21,15 @@ To start using polars, load one of these modules using a `module load` command l module load polars/0.15.6-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|polars/0.15.6-foss-2022a|x|x|x|x|x|x| + + +### polars/0.15.6-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|polars/0.15.6-foss-2022a|x|x|x|x|x|x|x|x| +connectorx-0.3.1, deltalake-0.6.4, maturin-0.14.6, polars-0.15.6, setuptools-65.6.3, setuptools-rust-1.5.2, xlsx2csv-0.8.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/poppler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/poppler.md index 6eea0bf20eb3..2e773b01fd35 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/poppler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/poppler.md @@ -6,6 +6,10 @@ hide: poppler ======= + +Poppler is a PDF rendering library + +https://poppler.freedesktop.org # Available modules @@ -14,12 +18,13 @@ The overview below shows which poppler installations are available per HPC-UGent To start using poppler, load one of these modules using a `module load` command like: ```shell -module load poppler/22.01.0-GCC-11.2.0 +module load poppler/23.09.0-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|poppler/22.01.0-GCC-11.2.0|x|x|x|-|x|x|x|x| -|poppler/21.06.1-GCC-10.3.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|poppler/23.09.0-GCC-12.3.0|x|x|x|x|x|x| +|poppler/22.01.0-GCC-11.2.0|x|x|x|-|x|x| +|poppler/21.06.1-GCC-10.3.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/popscle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/popscle.md index 91c0172413fb..a153720e6f5c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/popscle.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/popscle.md @@ -6,6 +6,10 @@ hide: popscle ======= + +A suite ofpopulation scale analysis tools for single-cell genomics data includingimplementation of Demuxlet / Freemuxlet methods and auxilary tools + +https://github.com/statgen/popscle # Available modules @@ -17,9 +21,9 @@ To start using popscle, load one of these modules using a `module load` command module load popscle/0.1-beta-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|popscle/0.1-beta-foss-2019b|-|x|x|-|x|x|-|x| -|popscle/0.1-beta-20210505-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|popscle/0.1-beta-foss-2019b|-|x|x|-|x|x| +|popscle/0.1-beta-20210505-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/porefoam.md b/mkdocs/docs/HPC/only/gent/available_software/detail/porefoam.md index 098eea323263..36fb09363d34 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/porefoam.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/porefoam.md @@ -6,6 +6,10 @@ hide: porefoam ======== + +Direct pore-scale simulation of single- and two-phase flow through confined media + +https://github.com/ImperialCollegeLondon/porefoam # Available modules @@ -17,8 +21,8 @@ To start using porefoam, load one of these modules using a `module load` command module load porefoam/2021-09-21-foss-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|porefoam/2021-09-21-foss-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|porefoam/2021-09-21-foss-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/powerlaw.md b/mkdocs/docs/HPC/only/gent/available_software/detail/powerlaw.md index 3c1dbb1220c4..8ece703e6dcc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/powerlaw.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/powerlaw.md @@ -6,6 +6,10 @@ hide: powerlaw ======== + +powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions + +http://www.github.com/jeffalstott/powerlaw # Available modules @@ -17,8 +21,8 @@ To start using powerlaw, load one of these modules using a `module load` command module load powerlaw/1.5-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|powerlaw/1.5-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|powerlaw/1.5-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pplacer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pplacer.md index 71799dfcec8e..b3059b35fc7f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pplacer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pplacer.md @@ -6,6 +6,10 @@ hide: pplacer ======= + +Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis. + +http://matsen.fhcrc.org/pplacer/ # Available modules @@ -17,8 +21,8 @@ To start using pplacer, load one of these modules using a `module load` command module load pplacer/1.1.alpha19 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pplacer/1.1.alpha19|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pplacer/1.1.alpha19|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/preseq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/preseq.md index 2cdb6165c209..b10801dacd0d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/preseq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/preseq.md @@ -6,6 +6,10 @@ hide: preseq ====== + +Software for predicting library complexity and genome coverage in high-throughput sequencing. + +https://smithlabresearch.org/software/preseq # Available modules @@ -17,8 +21,8 @@ To start using preseq, load one of these modules using a `module load` command l module load preseq/3.2.0-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|preseq/3.2.0-GCC-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|preseq/3.2.0-GCC-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/presto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/presto.md index 3d47c412f6a6..3370598e3794 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/presto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/presto.md @@ -6,6 +6,10 @@ hide: presto ====== + +Presto performs a fast Wilcoxon rank sum test and auROC analysis. + +https://github.com/immunogenomics/presto # Available modules @@ -14,12 +18,13 @@ The overview below shows which presto installations are available per HPC-UGent To start using presto, load one of these modules using a `module load` command like: ```shell -module load presto/1.0.0-20230113-foss-2022a-R-4.2.1 +module load presto/1.0.0-20230501-foss-2023a-R-4.3.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|presto/1.0.0-20230113-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| -|presto/1.0.0-20200718-foss-2021b-R-4.1.2|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|presto/1.0.0-20230501-foss-2023a-R-4.3.2|x|x|x|x|x|x| +|presto/1.0.0-20230113-foss-2022a-R-4.2.1|x|x|x|x|x|x| +|presto/1.0.0-20200718-foss-2021b-R-4.1.2|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pretty-yaml.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pretty-yaml.md index 4a3acad1659d..bde0b7118a04 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pretty-yaml.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pretty-yaml.md @@ -6,6 +6,10 @@ hide: pretty-yaml =========== + +PyYAML-based python module to produce pretty and readable YAML-serialized data.This module is for serialization only, see ruamel.yaml module for literate YAMLparsing (keeping track of comments, spacing, line/column numbers of values, etc). + +https://github.com/mk-fg/pretty-yaml # Available modules @@ -17,8 +21,8 @@ To start using pretty-yaml, load one of these modules using a `module load` comm module load pretty-yaml/21.10.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pretty-yaml/21.10.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pretty-yaml/21.10.1-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/prodigal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/prodigal.md index a1a36944db76..7dc7c10f9b28 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/prodigal.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/prodigal.md @@ -6,6 +6,10 @@ hide: prodigal ======== + +Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. + +https://github.com/hyattpd/Prodigal/ # Available modules @@ -14,14 +18,17 @@ The overview below shows which prodigal installations are available per HPC-UGen To start using prodigal, load one of these modules using a `module load` command like: ```shell -module load prodigal/2.6.3-GCCcore-11.2.0 +module load prodigal/2.6.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|prodigal/2.6.3-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|prodigal/2.6.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|prodigal/2.6.3-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|prodigal/2.6.3-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|prodigal/2.6.3-GCCcore-12.3.0|x|x|x|x|x|x| +|prodigal/2.6.3-GCCcore-12.2.0|x|x|x|x|x|x| +|prodigal/2.6.3-GCCcore-11.3.0|x|x|x|x|x|x| +|prodigal/2.6.3-GCCcore-11.2.0|x|x|x|x|x|x| +|prodigal/2.6.3-GCCcore-10.2.0|x|x|x|x|x|x| +|prodigal/2.6.3-GCCcore-9.3.0|-|x|x|-|x|x| +|prodigal/2.6.3-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/prokka.md b/mkdocs/docs/HPC/only/gent/available_software/detail/prokka.md index 78ef6a910ab4..a87fb3b63372 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/prokka.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/prokka.md @@ -6,6 +6,10 @@ hide: prokka ====== + +Prokka is a software tool for the rapid annotation of prokaryotic genomes. + +https://www.vicbioinformatics.com/software.prokka.shtml # Available modules @@ -17,9 +21,9 @@ To start using prokka, load one of these modules using a `module load` command l module load prokka/1.14.5-gompi-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|prokka/1.14.5-gompi-2020b|-|x|x|x|x|x|x|x| -|prokka/1.14.5-gompi-2019b|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|prokka/1.14.5-gompi-2020b|-|x|x|x|x|x| +|prokka/1.14.5-gompi-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf-python.md index 7143efbbd87d..5ac7d21f7cba 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf-python.md @@ -6,6 +6,10 @@ hide: protobuf-python =============== + +Python Protocol Buffers runtime library. + +https://github.com/google/protobuf/ # Available modules @@ -14,16 +18,18 @@ The overview below shows which protobuf-python installations are available per H To start using protobuf-python, load one of these modules using a `module load` command like: ```shell -module load protobuf-python/3.19.4-GCCcore-11.3.0 +module load protobuf-python/4.24.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|protobuf-python/3.19.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|protobuf-python/3.17.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|protobuf-python/3.17.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|protobuf-python/3.14.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|protobuf-python/3.13.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|protobuf-python/3.10.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|protobuf-python/4.24.0-GCCcore-12.3.0|x|x|x|x|x|x| +|protobuf-python/4.23.0-GCCcore-12.2.0|x|x|x|x|x|x| +|protobuf-python/3.19.4-GCCcore-11.3.0|x|x|x|x|x|x| +|protobuf-python/3.17.3-GCCcore-11.2.0|x|x|x|x|x|x| +|protobuf-python/3.17.3-GCCcore-10.3.0|x|x|x|x|x|x| +|protobuf-python/3.14.0-GCCcore-10.2.0|x|x|x|x|x|x| +|protobuf-python/3.13.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|protobuf-python/3.10.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf.md index c642c49d9ddc..6410e8a096da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/protobuf.md @@ -6,6 +6,10 @@ hide: protobuf ======== + +Google Protocol Buffers + +https://github.com/google/protobuf/ # Available modules @@ -14,18 +18,20 @@ The overview below shows which protobuf installations are available per HPC-UGen To start using protobuf, load one of these modules using a `module load` command like: ```shell -module load protobuf/3.19.4-GCCcore-11.3.0 +module load protobuf/24.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|protobuf/3.19.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|protobuf/3.17.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|protobuf/3.17.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|protobuf/3.14.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|protobuf/3.13.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|protobuf/3.10.0-GCCcore-8.3.0|-|x|x|-|x|x|x|x| -|protobuf/2.5.0-GCCcore-10.2.0|-|x|x|-|x|x|x|x| -|protobuf/2.5.0-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|protobuf/24.0-GCCcore-12.3.0|x|x|x|x|x|x| +|protobuf/23.0-GCCcore-12.2.0|x|x|x|x|x|x| +|protobuf/3.19.4-GCCcore-11.3.0|x|x|x|x|x|x| +|protobuf/3.17.3-GCCcore-11.2.0|x|x|x|x|x|x| +|protobuf/3.17.3-GCCcore-10.3.0|x|x|x|x|x|x| +|protobuf/3.14.0-GCCcore-10.2.0|x|x|x|x|x|x| +|protobuf/3.13.0-GCCcore-9.3.0|-|x|x|-|x|x| +|protobuf/3.10.0-GCCcore-8.3.0|-|x|x|-|x|x| +|protobuf/2.5.0-GCCcore-10.2.0|-|x|x|-|x|x| +|protobuf/2.5.0-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md b/mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md index 38736b393850..b0ea758f386d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/psutil.md @@ -6,6 +6,10 @@ hide: psutil ====== + +A cross-platform process and system utilities module for Python + +https://github.com/giampaolo/psutil # Available modules @@ -17,8 +21,15 @@ To start using psutil, load one of these modules using a `module load` command l module load psutil/5.9.5-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|psutil/5.9.5-GCCcore-12.2.0|x|x|x|x|x|x| + + +### psutil/5.9.5-GCCcore-12.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|psutil/5.9.5-GCCcore-12.2.0|x|x|x|x|x|x|x|x| +psutil-5.9.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/psycopg2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/psycopg2.md index 6311c73be82f..64085db7eb09 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/psycopg2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/psycopg2.md @@ -6,6 +6,10 @@ hide: psycopg2 ======== + +Psycopg is the most popular PostgreSQL adapter for the Python programming language. + +https://psycopg.org/ # Available modules @@ -17,9 +21,9 @@ To start using psycopg2, load one of these modules using a `module load` command module load psycopg2/2.9.6-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|psycopg2/2.9.6-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|psycopg2/2.9.5-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|psycopg2/2.9.6-GCCcore-11.3.0|x|x|x|x|x|x| +|psycopg2/2.9.5-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pugixml.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pugixml.md index b42c3fb32664..97c5249eefd5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pugixml.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pugixml.md @@ -6,6 +6,10 @@ hide: pugixml ======= + +pugixml is a light-weight C++ XML processing library + +https://pugixml.org/ # Available modules @@ -17,8 +21,8 @@ To start using pugixml, load one of these modules using a `module load` command module load pugixml/1.12.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pugixml/1.12.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pugixml/1.12.1-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pullseq.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pullseq.md index 311d404a3dd9..672ec2c367ed 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pullseq.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pullseq.md @@ -6,6 +6,10 @@ hide: pullseq ======= + +Utility program for extracting sequences from a fasta/fastq file + +https://github.com/bcthomas/pullseq # Available modules @@ -17,8 +21,8 @@ To start using pullseq, load one of these modules using a `module load` command module load pullseq/1.0.2-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pullseq/1.0.2-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pullseq/1.0.2-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/purge_dups.md b/mkdocs/docs/HPC/only/gent/available_software/detail/purge_dups.md index 6e5a835a8aea..7bec930e8563 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/purge_dups.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/purge_dups.md @@ -6,6 +6,10 @@ hide: purge_dups ========== + +purge haplotigs and overlaps in an assembly based on read depth + +https://github.com/dfguan/purge_dups # Available modules @@ -17,8 +21,15 @@ To start using purge_dups, load one of these modules using a `module load` comma module load purge_dups/1.2.5-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|purge_dups/1.2.5-foss-2021b|x|x|x|-|x|x| + + +### purge_dups/1.2.5-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|purge_dups/1.2.5-foss-2021b|x|x|x|-|x|x|x|x| +runner-20191220 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pv.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pv.md index 195e22e95f26..6c31b39f497b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pv.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pv.md @@ -6,6 +6,10 @@ hide: pv == + +Pipe Viewer - monitor the progress of data through a pipe + +https://www.ivarch.com/programs/pv.shtml # Available modules @@ -17,8 +21,8 @@ To start using pv, load one of these modules using a `module load` command like: module load pv/1.7.24-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pv/1.7.24-GCCcore-12.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pv/1.7.24-GCCcore-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/py-cpuinfo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/py-cpuinfo.md index 96cc6b9508e2..806df9c955eb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/py-cpuinfo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/py-cpuinfo.md @@ -6,6 +6,10 @@ hide: py-cpuinfo ========== + +py-cpuinfo gets CPU info with pure Python. + +https://github.com/workhorsy/py-cpuinfo # Available modules @@ -17,9 +21,9 @@ To start using py-cpuinfo, load one of these modules using a `module load` comma module load py-cpuinfo/9.0.0-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|py-cpuinfo/9.0.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|py-cpuinfo/9.0.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|py-cpuinfo/9.0.0-GCCcore-12.2.0|x|x|x|x|x|x| +|py-cpuinfo/9.0.0-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/py3Dmol.md b/mkdocs/docs/HPC/only/gent/available_software/detail/py3Dmol.md index c7213be5e97e..95306cbc4b03 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/py3Dmol.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/py3Dmol.md @@ -6,6 +6,10 @@ hide: py3Dmol ======= + +A simple IPython/Jupyter widget to embed an interactive 3Dmol.js viewer in a notebook. + +https://github.com/3dmol/3Dmol.js/tree/master/py3Dmol # Available modules @@ -17,8 +21,15 @@ To start using py3Dmol, load one of these modules using a `module load` command module load py3Dmol/2.0.1.post1-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|py3Dmol/2.0.1.post1-GCCcore-11.3.0|x|-|x|-|x|-| + + +### py3Dmol/2.0.1.post1-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|py3Dmol/2.0.1.post1-GCCcore-11.3.0|x|-|x|-|x|-|-|-| +py3Dmol-2.0.1.post1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyBigWig.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyBigWig.md index 9d3dbcfb0bca..533c09529b3b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyBigWig.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyBigWig.md @@ -6,6 +6,10 @@ hide: pyBigWig ======== + +A python extension, written in C, for quick access to bigBed files and access to and creation of bigWig files. + +https://github.com/deeptools/pyBigWig # Available modules @@ -17,11 +21,11 @@ To start using pyBigWig, load one of these modules using a `module load` command module load pyBigWig/0.3.18-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyBigWig/0.3.18-foss-2022a|x|x|x|x|x|x|x|x| -|pyBigWig/0.3.18-foss-2021b|x|x|x|-|x|x|x|x| -|pyBigWig/0.3.18-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|pyBigWig/0.3.17-GCCcore-9.3.0|-|-|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyBigWig/0.3.18-foss-2022a|x|x|x|x|x|x| +|pyBigWig/0.3.18-foss-2021b|x|x|x|-|x|x| +|pyBigWig/0.3.18-GCCcore-10.2.0|-|x|x|x|x|x| +|pyBigWig/0.3.17-GCCcore-9.3.0|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyEGA3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyEGA3.md index e49da64ae7dd..8f3baa2d7c71 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyEGA3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyEGA3.md @@ -6,6 +6,10 @@ hide: pyEGA3 ====== + +A basic Python-based EGA download client + +https://github.com/EGA-archive/ega-download-client # Available modules @@ -14,11 +18,25 @@ The overview below shows which pyEGA3 installations are available per HPC-UGent To start using pyEGA3, load one of these modules using a `module load` command like: ```shell -module load pyEGA3/4.0.0-GCCcore-11.2.0 +module load pyEGA3/5.0.2-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyEGA3/5.0.2-GCCcore-12.3.0|x|x|x|x|x|x| +|pyEGA3/4.0.0-GCCcore-11.2.0|x|x|x|-|x|x| + + +### pyEGA3/5.0.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +htsget-0.2.6, humanize-4.8.0, pyEGA3-5.0.2, urllib3-1.26.18 + +### pyEGA3/4.0.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyEGA3/4.0.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +htsget-0.2.5, humanize-4.0.0, pyEGA3-4.0.0, urllib3-1.26.9 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyGenomeTracks.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyGenomeTracks.md index 24a6ea6f909c..fa3bf24ecd9c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyGenomeTracks.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyGenomeTracks.md @@ -6,6 +6,10 @@ hide: pyGenomeTracks ============== + +pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. + +https://pygenometracks.readthedocs.io # Available modules @@ -17,9 +21,22 @@ To start using pyGenomeTracks, load one of these modules using a `module load` c module load pyGenomeTracks/3.8-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyGenomeTracks/3.8-foss-2022a|x|x|x|x|x|x| +|pyGenomeTracks/3.7-foss-2021b|x|x|x|-|x|x| + + +### pyGenomeTracks/3.8-foss-2022a + +This is a list of extensions included in the module: + +argcomplete-2.0.0, argh-0.27.2, gffutils-0.11.1, pyGenomeTracks-3.8, pypairix-0.3.7 + +### pyGenomeTracks/3.7-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyGenomeTracks/3.8-foss-2022a|x|x|x|x|x|x|x|x| -|pyGenomeTracks/3.7-foss-2021b|x|x|x|-|x|x|x|x| +argcomplete-2.0.0, argh-0.26.2, asciitree-0.3.3, cooler-0.8.11, cytoolz-0.10.1, dill-0.3.5.1, gffutils-0.11.0, HiCMatrix-15, multiprocess-0.70.13, pyGenomeTracks-3.7, pypairix-0.3.7, toolz-0.12.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pySCENIC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pySCENIC.md index 8ae7e1fafa0c..1e2d84523b30 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pySCENIC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pySCENIC.md @@ -6,6 +6,10 @@ hide: pySCENIC ======== + +pySCENIC is a lightning-fast python implementation of the SCENICpipeline (Single-Cell rEgulatory Network Inference and Clustering) which enablesbiologists to infer transcription factors, gene regulatory networks andcell types from single-cell RNA-seq data. + +https://github.com/aertslab/pySCENIC # Available modules @@ -17,9 +21,22 @@ To start using pySCENIC, load one of these modules using a `module load` command module load pySCENIC/0.10.3-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pySCENIC/0.10.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|pySCENIC/0.10.3-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### pySCENIC/0.10.3-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +arboreto-0.1.5, boltons-20.2.0, cytoolz-0.10.1, dill-0.3.2, frozendict-1.2, interlap-0.2.6, loompy-3.0.6, multiprocessing_on_dill-3.5.0a4, numpy_groupies-0.9.10, pyscenic-0.10.3, umap-learn-0.4.6 + +### pySCENIC/0.10.3-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pySCENIC/0.10.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|pySCENIC/0.10.3-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +arboreto-0.1.5, boltons-20.2.0, cytoolz-0.10.1, dill-0.3.2, frozendict-1.2, interlap-0.2.6, loompy-3.0.6, multiprocessing_on_dill-3.5.0a4, numpy_groupies-0.9.10, pyscenic-0.10.3, umap-learn-0.4.6 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyWannier90.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyWannier90.md index 58db0bc454a6..157b755c0e8b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyWannier90.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyWannier90.md @@ -6,6 +6,10 @@ hide: pyWannier90 =========== + +A Wannier90 Python interface for VASP and PySCF + +https://github.com/hungpham2017/pyWannier90 # Available modules @@ -17,9 +21,9 @@ To start using pyWannier90, load one of these modules using a `module load` comm module load pyWannier90/2021-12-07-gomkl-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyWannier90/2021-12-07-gomkl-2021a|x|x|x|-|x|x|x|x| -|pyWannier90/2021-12-07-foss-2021a|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyWannier90/2021-12-07-gomkl-2021a|x|x|x|-|x|x| +|pyWannier90/2021-12-07-foss-2021a|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pybedtools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pybedtools.md index 09ccf606cb2f..c848c951219f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pybedtools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pybedtools.md @@ -6,6 +6,10 @@ hide: pybedtools ========== + +pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python. + +https://daler.github.io/pybedtools # Available modules @@ -17,13 +21,27 @@ To start using pybedtools, load one of these modules using a `module load` comma module load pybedtools/0.9.0-GCC-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pybedtools/0.9.0-GCC-12.2.0|x|x|x|x|x|x| +|pybedtools/0.9.0-GCC-11.3.0|x|x|x|x|x|x| +|pybedtools/0.8.2-GCC-11.2.0-Python-2.7.18|x|x|x|x|x|x| +|pybedtools/0.8.2-GCC-11.2.0|x|x|x|-|x|x| +|pybedtools/0.8.2-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x| +|pybedtools/0.8.2-GCC-10.2.0|-|x|x|x|x|x| +|pybedtools/0.8.1-foss-2019b|-|x|x|-|x|x| + + +### pybedtools/0.9.0-GCC-12.2.0 + +This is a list of extensions included in the module: + +pybedtools-0.9.0 + +### pybedtools/0.9.0-GCC-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pybedtools/0.9.0-GCC-12.2.0|x|x|x|x|x|x|x|x| -|pybedtools/0.9.0-GCC-11.3.0|x|x|x|x|x|x|x|x| -|pybedtools/0.8.2-GCC-11.2.0|x|x|x|-|x|x|x|x| -|pybedtools/0.8.2-GCC-10.2.0-Python-2.7.18|-|x|x|x|x|x|x|x| -|pybedtools/0.8.2-GCC-10.2.0|-|x|x|x|x|x|x|x| -|pybedtools/0.8.1-foss-2019b|-|x|x|-|x|x|x|x| +pybedtools-0.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pybind11.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pybind11.md index 18169643da69..b70cddf5cc72 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pybind11.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pybind11.md @@ -6,6 +6,10 @@ hide: pybind11 ======== + +pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code. + +https://pybind11.readthedocs.io # Available modules @@ -14,19 +18,20 @@ The overview below shows which pybind11 installations are available per HPC-UGen To start using pybind11, load one of these modules using a `module load` command like: ```shell -module load pybind11/2.11.1-GCCcore-12.3.0 +module load pybind11/2.11.1-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pybind11/2.11.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|pybind11/2.10.3-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|pybind11/2.9.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|pybind11/2.7.1-GCCcore-11.2.0-Python-2.7.18|x|x|x|x|x|x|x|x| -|pybind11/2.7.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|pybind11/2.6.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|pybind11/2.6.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|pybind11/2.4.3-GCCcore-9.3.0-Python-3.8.2|x|x|x|x|x|x|x|x| -|pybind11/2.4.3-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pybind11/2.11.1-GCCcore-13.2.0|x|x|x|x|x|x| +|pybind11/2.11.1-GCCcore-12.3.0|x|x|x|x|x|x| +|pybind11/2.10.3-GCCcore-12.2.0|x|x|x|x|x|x| +|pybind11/2.9.2-GCCcore-11.3.0|x|x|x|x|x|x| +|pybind11/2.7.1-GCCcore-11.2.0-Python-2.7.18|x|x|x|x|x|x| +|pybind11/2.7.1-GCCcore-11.2.0|x|x|x|x|x|x| +|pybind11/2.6.2-GCCcore-10.3.0|x|x|x|x|x|x| +|pybind11/2.6.0-GCCcore-10.2.0|x|x|x|x|x|x| +|pybind11/2.4.3-GCCcore-9.3.0-Python-3.8.2|x|x|x|x|x|x| +|pybind11/2.4.3-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pycocotools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pycocotools.md index f2c730415331..eba8e11fc500 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pycocotools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pycocotools.md @@ -6,6 +6,10 @@ hide: pycocotools =========== + +Official APIs for the MS-COCO dataset + +https://pypi.org/project/pycocotools # Available modules @@ -17,10 +21,10 @@ To start using pycocotools, load one of these modules using a `module load` comm module load pycocotools/2.0.4-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pycocotools/2.0.4-foss-2021a|x|x|x|-|x|x|x|x| -|pycocotools/2.0.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|pycocotools/2.0.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pycocotools/2.0.4-foss-2021a|x|x|x|-|x|x| +|pycocotools/2.0.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|pycocotools/2.0.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pycodestyle.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pycodestyle.md new file mode 100644 index 000000000000..c01c4362a73b --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pycodestyle.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +pycodestyle +=========== + + +pycodestyle is a tool to check your Python code against some of the style conventions in PEP 8. + +https://pycodestyle.readthedocs.io +# Available modules + + +The overview below shows which pycodestyle installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using pycodestyle, load one of these modules using a `module load` command like: + +```shell +module load pycodestyle/2.11.1-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pycodestyle/2.11.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pydantic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pydantic.md index 9950b52145a7..46a9f1243760 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pydantic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pydantic.md @@ -6,6 +6,10 @@ hide: pydantic ======== + +Data validation and settings management using Python type hinting. + +https://github.com/samuelcolvin/pydantic # Available modules @@ -14,11 +18,39 @@ The overview below shows which pydantic installations are available per HPC-UGen To start using pydantic, load one of these modules using a `module load` command like: ```shell -module load pydantic/1.10.4-GCCcore-11.3.0 +module load pydantic/2.5.3-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pydantic/2.5.3-GCCcore-12.3.0|x|x|x|x|x|x| +|pydantic/2.5.3-GCCcore-12.2.0|x|x|x|x|x|x| +|pydantic/1.10.13-GCCcore-12.3.0|x|x|x|x|x|x| +|pydantic/1.10.4-GCCcore-11.3.0|x|x|x|x|x|x| + + +### pydantic/2.5.3-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +annotated_types-0.6.0, pydantic-2.5.3, pydantic_core-2.14.6 + +### pydantic/2.5.3-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +annotated_types-0.6.0, pydantic-2.5.3, pydantic_core-2.14.6 + +### pydantic/1.10.13-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +pydantic-1.10.13 + +### pydantic/1.10.4-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pydantic/1.10.4-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +pydantic-1.10.4, typing_extensions-4.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pydicom.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pydicom.md index e3d7c18d478d..22c6cb290aac 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pydicom.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pydicom.md @@ -6,6 +6,10 @@ hide: pydicom ======= + +Pure python package for DICOM medical file reading and writing. + +https://github.com/pydicom/pydicom # Available modules @@ -17,11 +21,11 @@ To start using pydicom, load one of these modules using a `module load` command module load pydicom/2.3.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pydicom/2.3.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|pydicom/2.2.2-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|pydicom/2.1.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|pydicom/1.4.2-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pydicom/2.3.0-GCCcore-11.3.0|x|x|x|x|x|x| +|pydicom/2.2.2-GCCcore-10.3.0|x|x|x|-|x|x| +|pydicom/2.1.2-GCCcore-10.2.0|x|x|x|x|x|x| +|pydicom/1.4.2-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pydot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pydot.md index 0ab7036808f1..348630ef2de3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pydot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pydot.md @@ -6,6 +6,10 @@ hide: pydot ===== + +Python interface to Graphviz's Dot language. + +https://github.com/pydot/pydot # Available modules @@ -17,11 +21,11 @@ To start using pydot, load one of these modules using a `module load` command li module load pydot/1.4.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pydot/1.4.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|pydot/1.4.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|pydot/1.4.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|pydot/1.4.2-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pydot/1.4.2-GCCcore-11.3.0|x|x|x|x|x|x| +|pydot/1.4.2-GCCcore-11.2.0|x|x|x|x|x|x| +|pydot/1.4.2-GCCcore-10.3.0|x|x|x|x|x|x| +|pydot/1.4.2-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyfaidx.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyfaidx.md index a7b9e246c0e3..cb7784f6a1b2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyfaidx.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyfaidx.md @@ -6,6 +6,10 @@ hide: pyfaidx ======= + +pyfaidx: efficient pythonic random access to fasta subsequences + +https://pypi.python.org/pypi/pyfaidx # Available modules @@ -17,13 +21,13 @@ To start using pyfaidx, load one of these modules using a `module load` command module load pyfaidx/0.7.2.1-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyfaidx/0.7.2.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|pyfaidx/0.7.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|pyfaidx/0.7.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|pyfaidx/0.6.3.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| -|pyfaidx/0.5.9.5-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|pyfaidx/0.5.9.5-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyfaidx/0.7.2.1-GCCcore-12.2.0|x|x|x|x|x|x| +|pyfaidx/0.7.1-GCCcore-11.3.0|x|x|x|x|x|x| +|pyfaidx/0.7.0-GCCcore-11.2.0|x|x|x|-|x|x| +|pyfaidx/0.6.3.1-GCCcore-10.3.0|x|x|x|-|x|x| +|pyfaidx/0.5.9.5-GCCcore-10.2.0|-|x|x|x|x|x| +|pyfaidx/0.5.9.5-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyfasta.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyfasta.md index 4e420062da9d..32f37718efd8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyfasta.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyfasta.md @@ -6,6 +6,10 @@ hide: pyfasta ======= + +fast, memory-efficient, pythonic (and command-line) access to fasta sequence files + +https://pypi.org/project/pyfasta/ # Available modules @@ -17,8 +21,8 @@ To start using pyfasta, load one of these modules using a `module load` command module load pyfasta/0.5.2-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyfasta/0.5.2-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyfasta/0.5.2-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pygmo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pygmo.md index 4b818a75e112..a78d5e1a3e73 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pygmo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pygmo.md @@ -6,6 +6,10 @@ hide: pygmo ===== + +pygmo is a scientific Python library for massively parallel optimization. + +https://esa.github.io/pygmo2 # Available modules @@ -17,8 +21,15 @@ To start using pygmo, load one of these modules using a `module load` command li module load pygmo/2.16.1-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pygmo/2.16.1-foss-2020b|-|x|x|x|x|x| + + +### pygmo/2.16.1-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pygmo/2.16.1-foss-2020b|-|x|x|x|x|x|x|x| +cloudpickle-1.6.0, dill-0.3.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pygraphviz.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pygraphviz.md new file mode 100644 index 000000000000..3c70c287c009 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pygraphviz.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +pygraphviz +========== + + +PyGraphviz is a Python interface to the Graphviz graph layout and visualization package. With PyGraphviz you can create, edit, read, write, and draw graphs using Python to access the Graphviz graph data structure and layout algorithms. + +https://pygraphviz.github.io +# Available modules + + +The overview below shows which pygraphviz installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using pygraphviz, load one of these modules using a `module load` command like: + +```shell +module load pygraphviz/1.11-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pygraphviz/1.11-GCCcore-12.3.0|x|x|x|x|x|x| + + +### pygraphviz/1.11-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +pygraphviz-1.11 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyiron.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyiron.md index f1f05e0d133e..40a675f196ea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyiron.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyiron.md @@ -6,6 +6,10 @@ hide: pyiron ====== + +An integrated development environment (IDE) for computational materials science. + +https://github.com/pyiron/pyiron # Available modules @@ -17,13 +21,50 @@ To start using pyiron, load one of these modules using a `module load` command l module load pyiron/0.2.6-hpcugent-2023-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyiron/0.2.6-hpcugent-2023-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|pyiron/0.2.6-hpcugent-2022c-intel-2020a-Python-3.8.2|-|-|-|-|-|x| +|pyiron/0.2.6-hpcugent-2022b-intel-2020a-Python-3.8.2|-|x|x|-|x|-| +|pyiron/0.2.6-hpcugent-2022-intel-2020a-Python-3.8.2|-|x|x|-|x|-| +|pyiron/0.2.6-hpcugent-2021-intel-2020a-Python-3.8.2|-|x|x|-|x|-| +|pyiron/0.2.6-hpcugent-2020-intel-2020a-Python-3.8.2|-|x|x|-|x|-| + + +### pyiron/0.2.6-hpcugent-2023-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.5, defusedxml-0.7.1, dill-0.3.5.1, gitdb-4.0.9, GitPython-3.1.27, greenlet-1.1.3, h5io-0.1.7, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2023, pysqa-0.0.3, seekpath-2.0.1, smmap-5.0.0, SQLAlchemy-1.4.41 + +### pyiron/0.2.6-hpcugent-2022c-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2022c, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19 + +### pyiron/0.2.6-hpcugent-2022b-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2022b, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19 + +### pyiron/0.2.6-hpcugent-2022-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2022, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19 + +### pyiron/0.2.6-hpcugent-2021-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2021, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19 + +### pyiron/0.2.6-hpcugent-2020-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyiron/0.2.6-hpcugent-2023-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|pyiron/0.2.6-hpcugent-2022c-intel-2020a-Python-3.8.2|-|-|-|-|-|x|-|x| -|pyiron/0.2.6-hpcugent-2022b-intel-2020a-Python-3.8.2|-|x|x|-|x|-|x|-| -|pyiron/0.2.6-hpcugent-2022-intel-2020a-Python-3.8.2|-|x|x|-|x|-|x|-| -|pyiron/0.2.6-hpcugent-2021-intel-2020a-Python-3.8.2|-|x|x|-|x|-|x|-| -|pyiron/0.2.6-hpcugent-2020-intel-2020a-Python-3.8.2|-|x|x|-|x|-|-|-| +colorama-0.4.3, defusedxml-0.6.0, dill-0.3.2, gitdb-4.0.5, GitPython-3.1.8, h5io-0.1.2, mendeleev-0.6.0, pyfiglet-0.8.post1, pyfileindex-0.0.4, pyiron-0.2.6-hpcugent-2020, pysqa-0.0.3, seekpath-2.0.1, smmap-3.0.4, SQLAlchemy-1.3.19 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pymatgen.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pymatgen.md index 4626624c981f..4309add52a8d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pymatgen.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pymatgen.md @@ -6,6 +6,10 @@ hide: pymatgen ======== + +Python Materials Genomics is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. + +https://pypi.python.org/pypi/pymatgen # Available modules @@ -17,9 +21,22 @@ To start using pymatgen, load one of these modules using a `module load` command module load pymatgen/2022.9.21-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pymatgen/2022.9.21-foss-2022a|x|x|x|-|x|x| +|pymatgen/2022.0.4-foss-2020b|-|x|x|x|x|x| + + +### pymatgen/2022.9.21-foss-2022a + +This is a list of extensions included in the module: + +emmet-core-0.36.8, latexcodec-2.0.1, monty-2022.9.9, mp-api-0.27.5, palettable-3.3.0, pybtex-0.24.0, pydantic-1.10.2, pymatgen-2022.9.21, spglib-1.16.5, uncertainties-3.1.7 + +### pymatgen/2022.0.4-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pymatgen/2022.9.21-foss-2022a|x|x|x|-|x|x|x|x| -|pymatgen/2022.0.4-foss-2020b|-|x|x|x|x|x|x|x| +monty-2021.3.3, numpy-1.20.1, palettable-3.3.0, pymatgen-2022.0.4, ruamel.yaml-0.16.13, ruamel.yaml.clib-0.2.2, uncertainties-3.1.5 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pymbar.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pymbar.md index cb6b6d7fc3fe..a894338abdd9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pymbar.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pymbar.md @@ -6,6 +6,10 @@ hide: pymbar ====== + +The pymbar package contains the pymbar suite of tools for the analysis ofsimulated and experimental data with the multistate Bennett acceptanceratio (MBAR) estimator. + +http://pymbar.readthedocs.io/en/master/ # Available modules @@ -17,8 +21,8 @@ To start using pymbar, load one of these modules using a `module load` command l module load pymbar/3.0.3-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pymbar/3.0.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pymbar/3.0.3-intel-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pymca.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pymca.md index 75ca97c4a85e..a56bf332edbf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pymca.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pymca.md @@ -6,6 +6,10 @@ hide: pymca ===== + +The PyMca X-Ray Fluorescence Toolkit, including PyMca5 and fisx. + +https://github.com/vasole/pymca # Available modules @@ -17,8 +21,15 @@ To start using pymca, load one of these modules using a `module load` command li module load pymca/5.6.3-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pymca/5.6.3-foss-2020b|-|x|x|x|x|x| + + +### pymca/5.6.3-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pymca/5.6.3-foss-2020b|-|x|x|x|x|x|x|x| +fisx-1.2.0, pymca-5.6.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyobjcryst.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyobjcryst.md index 25263a06134b..0b656cc304d2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyobjcryst.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyobjcryst.md @@ -6,6 +6,10 @@ hide: pyobjcryst ========== + +Python bindings to ObjCryst++, the Object-Oriented Crystallographic Library. + +https://github.com/diffpy/pyobjcryst # Available modules @@ -17,10 +21,10 @@ To start using pyobjcryst, load one of these modules using a `module load` comma module load pyobjcryst/2.2.1-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyobjcryst/2.2.1-intel-2020a-Python-3.8.2|-|-|-|-|-|x|-|x| -|pyobjcryst/2.2.1-foss-2021b|x|x|x|-|x|x|x|x| -|pyobjcryst/2.1.0.post2-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyobjcryst/2.2.1-intel-2020a-Python-3.8.2|-|-|-|-|-|x| +|pyobjcryst/2.2.1-foss-2021b|x|x|x|-|x|x| +|pyobjcryst/2.1.0.post2-intel-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyodbc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyodbc.md index 2b0408c36d56..11442259a22e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyodbc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyodbc.md @@ -6,6 +6,10 @@ hide: pyodbc ====== + +pyodbc is an open source Python module that makes accessing ODBC databases simple. It implements the DB API 2.0 specification but is packed with even more Pythonic convenience. + +https://github.com/mkleehammer/pyodbc # Available modules @@ -17,8 +21,15 @@ To start using pyodbc, load one of these modules using a `module load` command l module load pyodbc/4.0.39-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyodbc/4.0.39-foss-2022b|x|x|x|x|x|x| + + +### pyodbc/4.0.39-foss-2022b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyodbc/4.0.39-foss-2022b|x|x|x|x|x|x|x|x| +pyodbc-4.0.39 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md index edc093228a7a..9ed10deff24e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyparsing.md @@ -6,6 +6,10 @@ hide: pyparsing ========= + +The pyparsing module is an alternative approach to creating andexecuting simple grammars, vs. the traditional lex/yacc approach, or the use ofregular expressions. The pyparsing module provides a library of classes thatclient code uses to construct the grammar directly in Python code. + +https://github.com/pyparsing/pyparsing # Available modules @@ -17,8 +21,8 @@ To start using pyparsing, load one of these modules using a `module load` comman module load pyparsing/2.4.6-GCCcore-8.3.0-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyparsing/2.4.6-GCCcore-8.3.0-Python-2.7.16|-|x|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyparsing/2.4.6-GCCcore-8.3.0-Python-2.7.16|-|x|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyproj.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyproj.md index 3308170e4f14..d170020baf41 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyproj.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyproj.md @@ -6,6 +6,10 @@ hide: pyproj ====== + +Python interface to PROJ4 library for cartographic transformations + +https://pyproj4.github.io/pyproj # Available modules @@ -14,16 +18,17 @@ The overview below shows which pyproj installations are available per HPC-UGent To start using pyproj, load one of these modules using a `module load` command like: ```shell -module load pyproj/3.5.0-GCCcore-12.2.0 +module load pyproj/3.6.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyproj/3.5.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|pyproj/3.4.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|pyproj/3.3.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|pyproj/3.0.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|pyproj/2.6.1.post1-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x|x|x| -|pyproj/2.4.2-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyproj/3.6.0-GCCcore-12.3.0|x|x|x|x|x|x| +|pyproj/3.5.0-GCCcore-12.2.0|x|x|x|x|x|x| +|pyproj/3.4.0-GCCcore-11.3.0|x|x|x|x|x|x| +|pyproj/3.3.1-GCCcore-11.2.0|x|x|x|-|x|x| +|pyproj/3.0.1-GCCcore-10.2.0|-|x|x|x|x|x| +|pyproj/2.6.1.post1-GCCcore-9.3.0-Python-3.8.2|-|x|x|-|x|x| +|pyproj/2.4.2-GCCcore-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-api.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-api.md index c6d57e0004b1..544fc937a47f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-api.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-api.md @@ -6,6 +6,10 @@ hide: pyro-api ======== + +Pyro is a flexible, scalable deep probabilistic programming library built on PyTorch. + +https://github.com/pyro-ppl/pyro-api # Available modules @@ -17,8 +21,8 @@ To start using pyro-api, load one of these modules using a `module load` command module load pyro-api/0.1.2-fosscuda-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyro-api/0.1.2-fosscuda-2020b|-|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyro-api/0.1.2-fosscuda-2020b|-|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-ppl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-ppl.md index d8070c6ab493..c00818691b2a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-ppl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyro-ppl.md @@ -6,6 +6,10 @@ hide: pyro-ppl ======== + +Pyro is a flexible, scalable deep probabilistic programming library built on PyTorch. + +https://github.com/pyro-ppl/pyro # Available modules @@ -14,11 +18,32 @@ The overview below shows which pyro-ppl installations are available per HPC-UGen To start using pyro-ppl, load one of these modules using a `module load` command like: ```shell -module load pyro-ppl/1.5.2-fosscuda-2020b +module load pyro-ppl/1.8.4-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyro-ppl/1.8.4-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|pyro-ppl/1.8.4-foss-2022a|x|x|x|x|x|x| +|pyro-ppl/1.5.2-fosscuda-2020b|-|-|-|-|x|-| + + +### pyro-ppl/1.8.4-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +opt_einsum-3.3.0, pyro-api-0.1.2, pyro-ppl-1.8.4 + +### pyro-ppl/1.8.4-foss-2022a + +This is a list of extensions included in the module: + +opt_einsum-3.3.0, pyro-api-0.1.2, pyro-ppl-1.8.4 + +### pyro-ppl/1.5.2-fosscuda-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyro-ppl/1.5.2-fosscuda-2020b|-|-|-|-|x|-|-|-| +opt_einsum-3.3.0, pyro-ppl-1.5.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pysamstats.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pysamstats.md index 88eeba8aafd8..145e8a32ef8c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pysamstats.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pysamstats.md @@ -6,6 +6,10 @@ hide: pysamstats ========== + +A Python utility for calculating statisticsagainst genome positions based on sequence alignments from a SAM or BAM file. + +https://github.com/alimanfoo/pysamstats # Available modules @@ -17,8 +21,8 @@ To start using pysamstats, load one of these modules using a `module load` comma module load pysamstats/1.1.2-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pysamstats/1.1.2-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pysamstats/1.1.2-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pysndfx.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pysndfx.md index c8849f6c1f93..73faf712f43f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pysndfx.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pysndfx.md @@ -6,6 +6,10 @@ hide: pysndfx ======= + +A lightweight Python wrapper for SoX - Sound eXchange. Supported effects range from EQ and compression to phasers, reverb and pitch shifters. + +https://github.com/carlthome/python-audio-effects # Available modules @@ -17,8 +21,8 @@ To start using pysndfx, load one of these modules using a `module load` command module load pysndfx/0.3.6-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pysndfx/0.3.6-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pysndfx/0.3.6-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pyspoa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pyspoa.md index 2705c21d7611..42c3eb85bd41 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pyspoa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pyspoa.md @@ -6,6 +6,10 @@ hide: pyspoa ====== + +Python bindings to spoa. + +https://github.com/nanoporetech/pyspoa # Available modules @@ -17,12 +21,12 @@ To start using pyspoa, load one of these modules using a `module load` command l module load pyspoa/0.0.9-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pyspoa/0.0.9-GCC-11.3.0|x|x|x|x|x|x|x|x| -|pyspoa/0.0.8-GCC-11.2.0|x|x|x|-|x|x|x|x| -|pyspoa/0.0.8-GCC-10.3.0|x|x|x|-|x|x|x|x| -|pyspoa/0.0.8-GCC-10.2.0|-|x|x|x|x|x|x|x| -|pyspoa/0.0.4-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pyspoa/0.0.9-GCC-11.3.0|x|x|x|x|x|x| +|pyspoa/0.0.8-GCC-11.2.0|x|x|x|-|x|x| +|pyspoa/0.0.8-GCC-10.3.0|x|x|x|-|x|x| +|pyspoa/0.0.8-GCC-10.2.0|-|x|x|x|x|x| +|pyspoa/0.0.4-GCC-8.3.0-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-flakefinder.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-flakefinder.md new file mode 100644 index 000000000000..1456a4d8f845 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-flakefinder.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +pytest-flakefinder +================== + + +Runs tests multiple times to expose flakiness. + +https://github.com/dropbox/pytest-flakefinder +# Available modules + + +The overview below shows which pytest-flakefinder installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using pytest-flakefinder, load one of these modules using a `module load` command like: + +```shell +module load pytest-flakefinder/1.1.0-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pytest-flakefinder/1.1.0-GCCcore-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-rerunfailures.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-rerunfailures.md new file mode 100644 index 000000000000..6f9f79ceb7ad --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-rerunfailures.md @@ -0,0 +1,30 @@ +--- +hide: + - toc +--- + +pytest-rerunfailures +==================== + + +pytest plugin to re-run tests to eliminate flaky failures. + +https://github.com/pytest-dev/pytest-rerunfailures +# Available modules + + +The overview below shows which pytest-rerunfailures installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using pytest-rerunfailures, load one of these modules using a `module load` command like: + +```shell +module load pytest-rerunfailures/12.0-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pytest-rerunfailures/12.0-GCCcore-12.3.0|x|x|x|x|x|x| +|pytest-rerunfailures/12.0-GCCcore-12.2.0|x|x|x|x|x|x| +|pytest-rerunfailures/11.1-GCCcore-11.3.0|x|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-shard.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-shard.md new file mode 100644 index 000000000000..9bcaf72fe96a --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-shard.md @@ -0,0 +1,30 @@ +--- +hide: + - toc +--- + +pytest-shard +============ + + +pytest plugin to support parallelism across multiple machines.Shards tests based on a hash of their test name enabling easy parallelism across machines,suitable for a wide variety of continuous integration services.Tests are split at the finest level of granularity, individual test cases,enabling parallelism even if all of your tests are in a single file(or even single parameterized test method). + +https://github.com/AdamGleave/pytest-shard +# Available modules + + +The overview below shows which pytest-shard installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using pytest-shard, load one of these modules using a `module load` command like: + +```shell +module load pytest-shard/0.1.2-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pytest-shard/0.1.2-GCCcore-12.3.0|x|x|x|x|x|x| +|pytest-shard/0.1.2-GCCcore-12.2.0|x|x|x|x|x|x| +|pytest-shard/0.1.2-GCCcore-11.3.0|x|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-xdist.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-xdist.md index bb642289da00..0f6819b46ff0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-xdist.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest-xdist.md @@ -6,6 +6,10 @@ hide: pytest-xdist ============ + +xdist: pytest distributed testing pluginThe pytest-xdist plugin extends pytest with some unique test execution modes: * test run parallelization: if you have multiple CPUs or hosts you can use those for a combined test run. This allows to speed up development or to use special resources of remote machines. * --looponfail: run your tests repeatedly in a subprocess. After each run pytest waits until a file in your project changes and then re-runs the previously failing tests. This is repeated until all tests pass after which again a full run is performed. * Multi-Platform coverage: you can specify different Python interpreters or different platforms and run tests in parallel on all of them.Before running tests remotely, pytest efficiently “rsyncs” yourprogram source code to the remote place. All test results are reportedback and displayed to your local terminal. You may specify differentPython versions and interpreters. + +https://github.com/pytest-dev/pytest-xdist # Available modules @@ -14,14 +18,46 @@ The overview below shows which pytest-xdist installations are available per HPC- To start using pytest-xdist, load one of these modules using a `module load` command like: ```shell -module load pytest-xdist/2.5.0-GCCcore-11.3.0 +module load pytest-xdist/3.3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pytest-xdist/3.3.1-GCCcore-12.3.0|x|x|x|x|x|x| +|pytest-xdist/2.5.0-GCCcore-11.3.0|x|x|x|x|x|x| +|pytest-xdist/2.5.0-GCCcore-11.2.0|x|-|x|-|x|-| +|pytest-xdist/2.3.0-GCCcore-10.3.0|x|x|x|x|x|x| +|pytest-xdist/2.3.0-GCCcore-10.2.0|x|x|x|x|x|x| + + +### pytest-xdist/3.3.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +apipkg-3.0.2, execnet-2.0.2, pytest-xdist-3.3.1 + +### pytest-xdist/2.5.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +apipkg-1.5, execnet-1.9.0, pytest-forked-1.4.0, pytest-xdist-2.5.0 + +### pytest-xdist/2.5.0-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +apipkg-1.5, execnet-1.9.0, pytest-forked-1.4.0, pytest-xdist-2.5.0 + +### pytest-xdist/2.3.0-GCCcore-10.3.0 + +This is a list of extensions included in the module: + +apipkg-1.5, execnet-1.9.0, pytest-forked-1.3.0, pytest-xdist-2.3.0 + +### pytest-xdist/2.3.0-GCCcore-10.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pytest-xdist/2.5.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|pytest-xdist/2.5.0-GCCcore-11.2.0|x|-|x|-|x|-|-|-| -|pytest-xdist/2.3.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|pytest-xdist/2.3.0-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +apipkg-1.5, execnet-1.9.0, pytest-forked-1.3.0, pytest-xdist-2.3.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pytest.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest.md new file mode 100644 index 000000000000..107115bec2dd --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pytest.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +pytest +====== + + +The pytest framework makes it easy to write small,readable tests, and can scale to support complex functional testing forapplications and libraries. + +https://docs.pytest.org/en/latest/ +# Available modules + + +The overview below shows which pytest installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using pytest, load one of these modules using a `module load` command like: + +```shell +module load pytest/7.4.2-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pytest/7.4.2-GCCcore-12.3.0|x|x|x|x|x|x| + + +### pytest/7.4.2-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +elementpath-4.1.5, flit-core-3.9.0, hypothesis-6.88.1, pytest-7.4.2, setuptools-scm-8.0.4, xmlschema-2.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pythermalcomfort.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pythermalcomfort.md new file mode 100644 index 000000000000..6c75546f846e --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pythermalcomfort.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +pythermalcomfort +================ + + +Package to calculate several thermal comfort indices (e.g. PMV, PPD, SET, adaptive) and convert physical variables. + +https://github.com/CenterForTheBuiltEnvironment/pythermalcomfort +# Available modules + + +The overview below shows which pythermalcomfort installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using pythermalcomfort, load one of these modules using a `module load` command like: + +```shell +module load pythermalcomfort/2.8.10-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pythermalcomfort/2.8.10-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-Levenshtein.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-Levenshtein.md index 144483a101da..aa8a989bf520 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-Levenshtein.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-Levenshtein.md @@ -6,6 +6,10 @@ hide: python-Levenshtein ================== + +Python extension for computing string edit distances and similarities. + +https://pypi.org/project/python-Levenshtein/ # Available modules @@ -17,9 +21,9 @@ To start using python-Levenshtein, load one of these modules using a `module loa module load python-Levenshtein/0.12.1-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|python-Levenshtein/0.12.1-foss-2020b|-|x|x|x|x|x|x|x| -|python-Levenshtein/0.12.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|python-Levenshtein/0.12.1-foss-2020b|-|x|x|x|x|x| +|python-Levenshtein/0.12.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-igraph.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-igraph.md index 613f482d5f4a..c99cb66b4b45 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-igraph.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-igraph.md @@ -6,6 +6,10 @@ hide: python-igraph ============= + +Python interface to the igraph high performance graph library, primarily aimed at complex network research and analysis. + +https://igraph.org/python # Available modules @@ -14,16 +18,60 @@ The overview below shows which python-igraph installations are available per HPC To start using python-igraph, load one of these modules using a `module load` command like: ```shell -module load python-igraph/0.10.3-foss-2022a +module load python-igraph/0.11.4-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|python-igraph/0.11.4-foss-2023a|x|x|x|x|x|x| +|python-igraph/0.10.3-foss-2022a|x|x|x|x|x|x| +|python-igraph/0.9.8-foss-2021b|x|x|x|x|x|x| +|python-igraph/0.9.6-foss-2021a|x|x|x|x|x|x| +|python-igraph/0.9.0-fosscuda-2020b|-|-|-|-|x|-| +|python-igraph/0.9.0-foss-2020b|-|x|x|x|x|x| +|python-igraph/0.8.0-foss-2020a|-|x|x|-|x|x| + + +### python-igraph/0.11.4-foss-2023a + +This is a list of extensions included in the module: + +cairocffi-1.6.1, igraph-0.11.4, texttable-1.7.0 + +### python-igraph/0.10.3-foss-2022a + +This is a list of extensions included in the module: + +igraph-0.10.3, texttable-1.6.7 + +### python-igraph/0.9.8-foss-2021b + +This is a list of extensions included in the module: + +igraph-0.9.8, texttable-1.6.4 + +### python-igraph/0.9.6-foss-2021a + +This is a list of extensions included in the module: + +python-igraph-0.9.6, texttable-1.6.4 + +### python-igraph/0.9.0-fosscuda-2020b + +This is a list of extensions included in the module: + +python-igraph-0.9.0, texttable-1.6.3 + +### python-igraph/0.9.0-foss-2020b + +This is a list of extensions included in the module: + +python-igraph-0.9.0, texttable-1.6.3 + +### python-igraph/0.8.0-foss-2020a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|python-igraph/0.10.3-foss-2022a|x|x|x|x|x|x|x|x| -|python-igraph/0.9.8-foss-2021b|x|x|x|x|x|x|x|x| -|python-igraph/0.9.6-foss-2021a|x|x|x|x|x|x|x|x| -|python-igraph/0.9.0-fosscuda-2020b|-|-|-|-|x|-|-|-| -|python-igraph/0.9.0-foss-2020b|-|x|x|x|x|x|x|x| -|python-igraph/0.8.0-foss-2020a|-|x|x|-|x|x|x|x| +python-igraph-0.8.0, texttable-1.6.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-irodsclient.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-irodsclient.md index ccda8c68fc9a..cd4cd73bf32c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-irodsclient.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-irodsclient.md @@ -6,6 +6,10 @@ hide: python-irodsclient ================== + +A python API for iRODS + +https://github.com/irods/python-irodsclient # Available modules @@ -17,9 +21,22 @@ To start using python-irodsclient, load one of these modules using a `module loa module load python-irodsclient/1.1.4-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|python-irodsclient/1.1.4-GCCcore-11.2.0|x|x|x|-|x|x| +|python-irodsclient/1.1.4-GCCcore-10.3.0|x|x|x|-|x|x| + + +### python-irodsclient/1.1.4-GCCcore-11.2.0 + +This is a list of extensions included in the module: + +defusedxml-0.7.1, prettytable-3.3.0, python-irodsclient-1.1.4 + +### python-irodsclient/1.1.4-GCCcore-10.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|python-irodsclient/1.1.4-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|python-irodsclient/1.1.4-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +defusedxml-0.7.1, prettytable-3.3.0, python-irodsclient-1.1.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-isal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-isal.md index ee5ca6b0c202..1518e22bc3b3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-isal.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-isal.md @@ -6,6 +6,10 @@ hide: python-isal =========== + +Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library. + +https://github.com/pycompression/python-isal # Available modules @@ -17,11 +21,11 @@ To start using python-isal, load one of these modules using a `module load` comm module load python-isal/1.1.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|python-isal/1.1.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|python-isal/0.11.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|python-isal/0.11.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|python-isal/0.11.0-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|python-isal/1.1.0-GCCcore-11.3.0|x|x|x|x|x|x| +|python-isal/0.11.1-GCCcore-11.2.0|x|x|x|-|x|x| +|python-isal/0.11.1-GCCcore-10.2.0|-|x|x|x|x|x| +|python-isal/0.11.0-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-louvain.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-louvain.md index f9a472bd653c..bd18d44480e8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-louvain.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-louvain.md @@ -6,6 +6,10 @@ hide: python-louvain ============== + +Louvain algorithm for community detection + +https://pypi.org/project/python-louvain # Available modules @@ -17,8 +21,8 @@ To start using python-louvain, load one of these modules using a `module load` c module load python-louvain/0.16-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|python-louvain/0.16-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|python-louvain/0.16-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-parasail.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-parasail.md index 753c47c8c185..41fe0a341f3f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-parasail.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-parasail.md @@ -6,6 +6,10 @@ hide: python-parasail =============== + +Python Bindings for the Parasail C Library + +https://github.com/jeffdaily/parasail-python # Available modules @@ -17,14 +21,14 @@ To start using python-parasail, load one of these modules using a `module load` module load python-parasail/1.3.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|python-parasail/1.3.3-foss-2022a|x|x|x|x|x|x|x|x| -|python-parasail/1.2.4-fosscuda-2020b|-|-|-|-|x|-|-|-| -|python-parasail/1.2.4-foss-2021b|x|x|x|-|x|x|x|x| -|python-parasail/1.2.4-foss-2021a|x|x|x|-|x|x|x|x| -|python-parasail/1.2.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|python-parasail/1.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|python-parasail/1.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|python-parasail/1.3.3-foss-2022a|x|x|x|x|x|x| +|python-parasail/1.2.4-fosscuda-2020b|-|-|-|-|x|-| +|python-parasail/1.2.4-foss-2021b|x|x|x|-|x|x| +|python-parasail/1.2.4-foss-2021a|x|x|x|-|x|x| +|python-parasail/1.2.2-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|python-parasail/1.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|python-parasail/1.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-telegram-bot.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-telegram-bot.md index d4b8d3abf69a..398807d6d5fd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-telegram-bot.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-telegram-bot.md @@ -6,6 +6,10 @@ hide: python-telegram-bot =================== + +This library provides a pure Python, asynchronous interface for the Telegram Bot API. It's compatible with Python versions 3.7+. + +https://python-telegram-bot.org/ # Available modules @@ -17,8 +21,15 @@ To start using python-telegram-bot, load one of these modules using a `module lo module load python-telegram-bot/20.0a0-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|python-telegram-bot/20.0a0-GCCcore-10.2.0|x|x|x|-|x|x| + + +### python-telegram-bot/20.0a0-GCCcore-10.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|python-telegram-bot/20.0a0-GCCcore-10.2.0|x|x|x|-|x|x|x|x| +anyio-3.6.2, APScheduler-3.9.1, backports.zoneinfo-0.2.1, cachetools-5.0.0, charset-normalizer-2.1.1, flit_core-3.7.1, h11-0.12.0, httpcore-0.14.7, httpx-0.22.0, idna-3.4, python-telegram-bot-20.0a0, pytz_deprecation_shim-0.1.0.post0, requests-2.28.1, rfc3986-1.5.0, sniffio-1.3.0, tornado-6.1, tzdata-2022.5, tzlocal-4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/python-weka-wrapper3.md b/mkdocs/docs/HPC/only/gent/available_software/detail/python-weka-wrapper3.md index 2ac7a7d38e80..140891fc4a0f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/python-weka-wrapper3.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/python-weka-wrapper3.md @@ -6,6 +6,10 @@ hide: python-weka-wrapper3 ==================== + +Python3 wrapper for the Weka Machine Learning Workbench + +https://github.com/fracpete/python-weka-wrapper3 # Available modules @@ -17,8 +21,15 @@ To start using python-weka-wrapper3, load one of these modules using a `module l module load python-weka-wrapper3/0.1.11-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|python-weka-wrapper3/0.1.11-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### python-weka-wrapper3/0.1.11-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|python-weka-wrapper3/0.1.11-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +javabridge-1.0.18, python-weka-wrapper3-0.1.11 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/pythran.md b/mkdocs/docs/HPC/only/gent/available_software/detail/pythran.md index 65f5c6f2f83b..453a159229d9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/pythran.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/pythran.md @@ -6,6 +6,10 @@ hide: pythran ======= + +Pythran is an ahead of time compiler for a subset of the Python language,with a focus on scientific computing. It takes a Python module annotated with a few interface descriptionand turns it into a native Python module with the same interface, but (hopefully) faster. + +https://pythran.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using pythran, load one of these modules using a `module load` command module load pythran/0.9.4.post1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|pythran/0.9.4.post1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### pythran/0.9.4.post1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|pythran/0.9.4.post1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +beniget-0.2.0, gast-0.3.2, ply-3.11, pythran-0.9.4.post1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/qcat.md b/mkdocs/docs/HPC/only/gent/available_software/detail/qcat.md index c505ba33e7cc..1bd5a5ab176a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/qcat.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/qcat.md @@ -6,6 +6,10 @@ hide: qcat ==== + +qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files + +https://github.com/nanoporetech/qcat/releases # Available modules @@ -17,10 +21,10 @@ To start using qcat, load one of these modules using a `module load` command lik module load qcat/1.1.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|qcat/1.1.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|qcat/1.1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|qcat/1.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|qcat/1.1.0-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|qcat/1.1.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|qcat/1.1.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/qnorm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/qnorm.md index a62e8ca8e07c..5edd6ee7398a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/qnorm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/qnorm.md @@ -6,6 +6,10 @@ hide: qnorm ===== + +Fast-ish (and correct!) quantile normalization in Python + +https://github.com/Maarten-vd-Sande/qnorm # Available modules @@ -17,8 +21,8 @@ To start using qnorm, load one of these modules using a `module load` command li module load qnorm/0.8.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|qnorm/0.8.1-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|qnorm/0.8.1-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rMATS-turbo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rMATS-turbo.md index 86e3d76bce8a..91aa47334e28 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rMATS-turbo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rMATS-turbo.md @@ -6,6 +6,10 @@ hide: rMATS-turbo =========== + +rMATS turbo is the C/Cython version of rMATS (refer to http://rnaseq-mats.sourceforge.net). + +https://github.com/Xinglab/rmats-turbo # Available modules @@ -17,8 +21,8 @@ To start using rMATS-turbo, load one of these modules using a `module load` comm module load rMATS-turbo/4.1.1-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rMATS-turbo/4.1.1-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rMATS-turbo/4.1.1-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/radian.md b/mkdocs/docs/HPC/only/gent/available_software/detail/radian.md new file mode 100644 index 000000000000..cf9c823be67b --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/radian.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +radian +====== + + +radian is an alternative console for the R program with multiline editing and rich syntax highlight. + +https://github.com/randy3k/radian +# Available modules + + +The overview below shows which radian installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using radian, load one of these modules using a `module load` command like: + +```shell +module load radian/0.6.9-foss-2022b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|radian/0.6.9-foss-2022b|x|x|x|x|x|x| + + +### radian/0.6.9-foss-2022b + +This is a list of extensions included in the module: + +prompt-toolkit-3.0.43, radian-0.6.9, rchitect-0.4.4 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rasterio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rasterio.md index 48019b21fe0d..af3d0b36eab4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rasterio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rasterio.md @@ -6,6 +6,10 @@ hide: rasterio ======== + +Rasterio reads and writes geospatial raster data. + +https://github.com/mapbox/rasterio # Available modules @@ -17,10 +21,29 @@ To start using rasterio, load one of these modules using a `module load` command module load rasterio/1.3.8-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rasterio/1.3.8-foss-2022b|x|x|x|x|x|x| +|rasterio/1.2.10-foss-2021b|x|x|x|-|x|x| +|rasterio/1.1.7-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### rasterio/1.3.8-foss-2022b + +This is a list of extensions included in the module: + +affine-2.4.0, click-plugins-1.1.1, cligj-0.7.2, rasterio-1.3.8, snuggs-1.4.7 + +### rasterio/1.2.10-foss-2021b + +This is a list of extensions included in the module: + +affine-2.3.1, boto3-1.24.3, botocore-1.27.3, click-plugins-1.1.1, cligj-0.7.2, jmespath-1.0.0, rasterio-1.2.10, s3transfer-0.6.0, snuggs-1.4.7 + +### rasterio/1.1.7-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rasterio/1.3.8-foss-2022b|x|x|x|x|x|x|x|x| -|rasterio/1.2.10-foss-2021b|x|x|x|-|x|x|x|x| -|rasterio/1.1.7-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +affine-2.3.0, attrs-20.2.0, boto3-1.15.16, botocore-1.18.16, click-7.1.2, click-plugins-1.1.1, cligj-0.5.0, jmespath-0.10.0, rasterio-1.1.7, s3transfer-0.3.3, snuggs-1.4.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rasterstats.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rasterstats.md index bfd29718dd3d..364ee19c59b7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rasterstats.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rasterstats.md @@ -6,6 +6,10 @@ hide: rasterstats =========== + +rasterstats is a Python module for summarizing geospatial raster datasets based on vector geometries. + +https://github.com/perrygeo/python-rasterstats # Available modules @@ -17,8 +21,15 @@ To start using rasterstats, load one of these modules using a `module load` comm module load rasterstats/0.15.0-foss-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rasterstats/0.15.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### rasterstats/0.15.0-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rasterstats/0.15.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +affine-2.3.0, cligj-0.5.0, rasterstats-0.15.0, simplejson-3.17.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rclone.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rclone.md new file mode 100644 index 000000000000..2b75c3432ca9 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rclone.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +rclone +====== + + +Rclone is a command line program to sync files and directories to and from a variety of online storage services + +https://rclone.org +# Available modules + + +The overview below shows which rclone installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using rclone, load one of these modules using a `module load` command like: + +```shell +module load rclone/1.65.2 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rclone/1.65.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/re2c.md b/mkdocs/docs/HPC/only/gent/available_software/detail/re2c.md index 3d30cbe40e10..843114be7ff8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/re2c.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/re2c.md @@ -6,6 +6,10 @@ hide: re2c ==== + +re2c is a free and open-source lexer generator for C and C++. Its main goal is generatingfast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of usingtraditional table-driven approach, re2c encodes the generated finite state automata directly in the formof conditional jumps and comparisons. + +https://re2c.org/ # Available modules @@ -14,17 +18,18 @@ The overview below shows which re2c installations are available per HPC-UGent Ti To start using re2c, load one of these modules using a `module load` command like: ```shell -module load re2c/3.0-GCCcore-12.2.0 +module load re2c/3.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|re2c/3.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|re2c/2.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|re2c/2.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|re2c/2.1.1-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|re2c/2.0.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|re2c/1.3-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|re2c/1.2.1-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|re2c/3.1-GCCcore-12.3.0|x|x|x|x|x|x| +|re2c/3.0-GCCcore-12.2.0|x|x|x|x|x|x| +|re2c/2.2-GCCcore-11.3.0|x|x|x|x|x|x| +|re2c/2.2-GCCcore-11.2.0|x|x|x|x|x|x| +|re2c/2.1.1-GCCcore-10.3.0|x|x|x|x|x|x| +|re2c/2.0.3-GCCcore-10.2.0|x|x|x|x|x|x| +|re2c/1.3-GCCcore-9.3.0|-|x|x|-|x|x| +|re2c/1.2.1-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/redis-py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/redis-py.md index 04d1efc9b639..3074cbce96e4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/redis-py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/redis-py.md @@ -6,6 +6,10 @@ hide: redis-py ======== + +The Python interface to the Redis key-value store. + +https://github.com/redis/redis-py # Available modules @@ -17,10 +21,29 @@ To start using redis-py, load one of these modules using a `module load` command module load redis-py/4.5.1-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|redis-py/4.5.1-foss-2022a|x|x|x|x|x|x| +|redis-py/4.3.3-foss-2021b|x|x|x|-|x|x| +|redis-py/4.3.1-foss-2021a|x|x|x|-|x|x| + + +### redis-py/4.5.1-foss-2022a + +This is a list of extensions included in the module: + +async-timeout-4.0.2, redis-py-4.5.1 + +### redis-py/4.3.3-foss-2021b + +This is a list of extensions included in the module: + +async-timeout-4.0.2, Deprecated-1.2.13, redis-py-4.3.3, wrapt-1.14.1 + +### redis-py/4.3.1-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|redis-py/4.5.1-foss-2022a|x|x|x|x|x|x|x|x| -|redis-py/4.3.3-foss-2021b|x|x|x|-|x|x|x|x| -|redis-py/4.3.1-foss-2021a|x|x|x|-|x|x|x|x| +async-timeout-4.0.2, Deprecated-1.2.13, redis-py-4.3.1, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/regionmask.md b/mkdocs/docs/HPC/only/gent/available_software/detail/regionmask.md index 7cdc01dc579c..dcf37bee2fa9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/regionmask.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/regionmask.md @@ -6,6 +6,10 @@ hide: regionmask ========== + +regionmask creates masks of geographical regions. It determines to whichgeographic region each grid point belongs. + +https://regionmask.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using regionmask, load one of these modules using a `module load` comma module load regionmask/0.10.0-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|regionmask/0.10.0-foss-2022b|x|x|x|x|x|x| + + +### regionmask/0.10.0-foss-2022b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|regionmask/0.10.0-foss-2022b|x|x|x|x|x|x|x|x| +regionmask-0.10.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/request.md b/mkdocs/docs/HPC/only/gent/available_software/detail/request.md index cd46542fc2b0..bb95f731efa6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/request.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/request.md @@ -6,6 +6,10 @@ hide: request ======= + +Request is designed to be the simplest way possible to make http calls. It supports HTTPS and follows redirects by default. + +https://github.com/request/request/ # Available modules @@ -17,8 +21,8 @@ To start using request, load one of these modules using a `module load` command module load request/2.88.1-fosscuda-2020b-nodejs-12.19.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|request/2.88.1-fosscuda-2020b-nodejs-12.19.0|-|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|request/2.88.1-fosscuda-2020b-nodejs-12.19.0|-|-|-|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rethinking.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rethinking.md new file mode 100644 index 000000000000..ec70b14a0530 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rethinking.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +rethinking +========== + + +R package that contains tools for conducting both quick quadratic approximation of the posterior distribution as well as Hamiltonian Monte Carlo. + +https://github.com/rmcelreath/rethinking +# Available modules + + +The overview below shows which rethinking installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using rethinking, load one of these modules using a `module load` command like: + +```shell +module load rethinking/2.40-20230914-foss-2023a-R-4.3.2 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rethinking/2.40-20230914-foss-2023a-R-4.3.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rgdal.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rgdal.md index 9202426a5d4c..08400cda2483 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rgdal.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rgdal.md @@ -6,6 +6,10 @@ hide: rgdal ===== + +Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4 and <= 2.5.0) and access to projection/transformation operations from the 'PROJ.4' library. + +https://rgdal.r-forge.r-project.org/ # Available modules @@ -17,11 +21,11 @@ To start using rgdal, load one of these modules using a `module load` command li module load rgdal/1.5-23-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rgdal/1.5-23-foss-2021a-R-4.1.0|-|x|x|-|x|x|x|x| -|rgdal/1.5-23-foss-2020b-R-4.0.4|-|x|x|x|x|x|x|x| -|rgdal/1.5-16-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| -|rgdal/1.4-8-foss-2019b-R-3.6.2|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rgdal/1.5-23-foss-2021a-R-4.1.0|-|x|x|-|x|x| +|rgdal/1.5-23-foss-2020b-R-4.0.4|-|x|x|x|x|x| +|rgdal/1.5-16-foss-2020a-R-4.0.0|-|x|x|-|x|x| +|rgdal/1.4-8-foss-2019b-R-3.6.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rgeos.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rgeos.md index fdd0d610a77e..b5474786a315 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rgeos.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rgeos.md @@ -6,6 +6,10 @@ hide: rgeos ===== + +R interface to Geometry Engine - Open Source (GEOS) using the C API for topology operations on geometries + +https://cran.r-project.org/web/packages/rgeos/ # Available modules @@ -17,10 +21,10 @@ To start using rgeos, load one of these modules using a `module load` command li module load rgeos/0.5-5-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rgeos/0.5-5-foss-2021a-R-4.1.0|-|x|x|-|x|x|x|x| -|rgeos/0.5-5-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| -|rgeos/0.5-2-foss-2019b-R-3.6.2|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rgeos/0.5-5-foss-2021a-R-4.1.0|-|x|x|-|x|x| +|rgeos/0.5-5-foss-2020a-R-4.0.0|-|x|x|-|x|x| +|rgeos/0.5-2-foss-2019b-R-3.6.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rickflow.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rickflow.md index 0687b1a7bd2e..7ba8e2beb201 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rickflow.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rickflow.md @@ -6,6 +6,10 @@ hide: rickflow ======== + +Running and Analyzing OpenMM Jobs + +https://gitlab.com/Olllom/rickflow # Available modules @@ -17,9 +21,22 @@ To start using rickflow, load one of these modules using a `module load` command module load rickflow/0.7.0-intel-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rickflow/0.7.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|rickflow/0.7.0-20200529-intel-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### rickflow/0.7.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +mpiplus-0.0.1, openmmtools-0.19.0, pymbar-3.0.5, rickflow-0.7.0 + +### rickflow/0.7.0-20200529-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rickflow/0.7.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|rickflow/0.7.0-20200529-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +mpiplus-0.0.1, openmmtools-0.19.0, pymbar-3.0.5, rickflow-0.7.0-20200529 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rioxarray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rioxarray.md index 77df81f6a304..cdd02564b819 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rioxarray.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rioxarray.md @@ -6,6 +6,10 @@ hide: rioxarray ========= + +geospatial xarray extension powered by rasterio + +https://github.com/corteva/rioxarray # Available modules @@ -17,8 +21,8 @@ To start using rioxarray, load one of these modules using a `module load` comman module load rioxarray/0.11.1-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rioxarray/0.11.1-foss-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rioxarray/0.11.1-foss-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rjags.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rjags.md index 7da810fffe8f..cfcdb7dec9d2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rjags.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rjags.md @@ -6,6 +6,10 @@ hide: rjags ===== + +The rjags package is an interface to the JAGS library. + +https://cran.r-project.org/web/packages/rjags # Available modules @@ -17,10 +21,10 @@ To start using rjags, load one of these modules using a `module load` command li module load rjags/4-13-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rjags/4-13-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| -|rjags/4-13-foss-2021b-R-4.2.0|x|x|x|-|x|x|x|x| -|rjags/4-10-foss-2020b-R-4.0.3|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rjags/4-13-foss-2022a-R-4.2.1|x|x|x|x|x|x| +|rjags/4-13-foss-2021b-R-4.2.0|x|x|x|-|x|x| +|rjags/4-10-foss-2020b-R-4.0.3|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rmarkdown.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rmarkdown.md index 331788156951..c391485b230a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rmarkdown.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rmarkdown.md @@ -6,6 +6,10 @@ hide: rmarkdown ========= + +Convert R Markdown documents into a variety of formats. + +https://cran.r-project.org/web/packages/rmarkdown # Available modules @@ -17,8 +21,8 @@ To start using rmarkdown, load one of these modules using a `module load` comman module load rmarkdown/2.20-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rmarkdown/2.20-foss-2021a-R-4.1.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rmarkdown/2.20-foss-2021a-R-4.1.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rpy2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rpy2.md index 8fbbf3bfe0f3..a78026d052da 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rpy2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rpy2.md @@ -6,6 +6,10 @@ hide: rpy2 ==== + +rpy2 is an interface to R running embedded in a Python process. + +https://rpy2.bitbucket.io/ # Available modules @@ -17,10 +21,36 @@ To start using rpy2, load one of these modules using a `module load` command lik module load rpy2/3.5.10-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rpy2/3.5.10-foss-2022a|x|x|x|x|x|x| +|rpy2/3.4.5-foss-2021b|x|x|x|x|x|x| +|rpy2/3.4.5-foss-2021a|x|x|x|x|x|x| +|rpy2/3.2.6-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### rpy2/3.5.10-foss-2022a + +This is a list of extensions included in the module: + +pytz-deprecation-shim-0.1.0.post0, rpy2-3.5.10, tzdata-2023.3, tzlocal-2.1 + +### rpy2/3.4.5-foss-2021b + +This is a list of extensions included in the module: + +backports-zoneinfo-0.2.1, cffi-1.15.0, pytz-deprecation-shim-0.1.0.post0, rpy2-3.4.5, simplegeneric-0.8.1, tzdata-2021.5, tzlocal-2.1 + +### rpy2/3.4.5-foss-2021a + +This is a list of extensions included in the module: + +backports-zoneinfo-0.2.1, cffi-1.15.1, pytz-deprecation-shim-0.1.0.post0, rpy2-3.4.5, simplegeneric-0.8.1, tzdata-2023.3, tzlocal-2.1 + +### rpy2/3.2.6-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rpy2/3.5.10-foss-2022a|x|x|x|x|x|x|x|x| -|rpy2/3.4.5-foss-2021b|x|x|x|x|x|x|x|x| -|rpy2/3.2.6-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +cffi-1.14.0, rpy2-3.2.6, simplegeneric-0.8.1, tzlocal-2.0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rstanarm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rstanarm.md index 445d76abd067..cbeaf2b1d9d0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rstanarm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rstanarm.md @@ -6,6 +6,10 @@ hide: rstanarm ======== + +Estimates previously compiled regression models using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation. + +https://r-forge.r-project.org/projects/rstanarm # Available modules @@ -17,8 +21,15 @@ To start using rstanarm, load one of these modules using a `module load` command module load rstanarm/2.19.3-foss-2019b-R-3.6.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rstanarm/2.19.3-foss-2019b-R-3.6.2|-|x|x|-|x|x| + + +### rstanarm/2.19.3-foss-2019b-R-3.6.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rstanarm/2.19.3-foss-2019b-R-3.6.2|-|x|x|-|x|x|-|x| +bayesplot-1.7.1, BH-1.72.0-3, colourpicker-1.0, dygraphs-1.1.1.6, packrat-0.5.0, RcppParallel-4.4.4, rsconnect-0.8.16, rstanarm-2.19.3, rstantools-2.0.0, shinyjs-1.1, shinystan-2.5.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/rstudio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/rstudio.md index 38bac5885de5..b7de3dd9a76a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/rstudio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/rstudio.md @@ -6,6 +6,10 @@ hide: rstudio ======= + +This RStudio Server version.RStudio is a set of integrated tools designed to help you be more productive with R.The server can be started with: rserver --server-daemonize=0 --www-port 8787 --rsession-which-r=$(which R) + +https://www.rstudio.com/ # Available modules @@ -17,8 +21,8 @@ To start using rstudio, load one of these modules using a `module load` command module load rstudio/1.3.959-foss-2020a-Java-11-R-4.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|rstudio/1.3.959-foss-2020a-Java-11-R-4.0.0|-|x|-|-|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|rstudio/1.3.959-foss-2020a-Java-11-R-4.0.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ruamel.yaml.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ruamel.yaml.md index 1bc93e0fad02..7d62af5125bf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ruamel.yaml.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ruamel.yaml.md @@ -6,6 +6,10 @@ hide: ruamel.yaml =========== + +ruamel.yaml is a YAML 1.2 loader/dumper package for Python. + +https://sourceforge.net/projects/ruamel-yaml # Available modules @@ -14,12 +18,32 @@ The overview below shows which ruamel.yaml installations are available per HPC-U To start using ruamel.yaml, load one of these modules using a `module load` command like: ```shell -module load ruamel.yaml/0.17.21-GCCcore-11.3.0 +module load ruamel.yaml/0.17.32-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ruamel.yaml/0.17.32-GCCcore-12.3.0|x|x|x|x|x|x| +|ruamel.yaml/0.17.21-GCCcore-11.3.0|x|x|x|x|x|x| +|ruamel.yaml/0.17.21-GCCcore-11.2.0|x|x|x|-|x|x| + + +### ruamel.yaml/0.17.32-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +configobj-5.0.8, lz4-4.3.2, ruamel.yaml-0.17.32, ruamel.yaml.base-0.3.2, ruamel.yaml.clib-0.2.7, ruamel.yaml.cmd-0.6.5, ruamel.yaml.convert-0.3.2 + +### ruamel.yaml/0.17.21-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +configobj-5.0.6, lz4-4.0.2, ruamel.yaml-0.17.21, ruamel.yaml.base-0.3.0, ruamel.yaml.clib-0.2.6, ruamel.yaml.cmd-0.6.3, ruamel.yaml.convert-0.3.2 + +### ruamel.yaml/0.17.21-GCCcore-11.2.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ruamel.yaml/0.17.21-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|ruamel.yaml/0.17.21-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +configobj-5.0.6, ruamel.yaml-0.17.21, ruamel.yaml.base-0.3.0, ruamel.yaml.clib-0.2.6, ruamel.yaml.cmd-0.5.10, ruamel.yaml.convert-0.3.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ruffus.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ruffus.md index 9b9690e1003e..aa0d98685687 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/ruffus.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/ruffus.md @@ -6,6 +6,10 @@ hide: ruffus ====== + +Ruffus is a Computation Pipeline library for python. It is open-sourced, powerful and user-friendly, and widely used in science and bioinformatics. + +http://www.ruffus.org.uk/ # Available modules @@ -17,8 +21,8 @@ To start using ruffus, load one of these modules using a `module load` command l module load ruffus/2.8.4-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|ruffus/2.8.4-foss-2021b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|ruffus/2.8.4-foss-2021b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/s3fs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/s3fs.md new file mode 100644 index 000000000000..234ca588a98d --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/s3fs.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +s3fs +==== + + +S3FS builds on aiobotocore to provide a convenient Python filesystem interface for S3.. + +https://github.com/fsspec/s3fs/ +# Available modules + + +The overview below shows which s3fs installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using s3fs, load one of these modules using a `module load` command like: + +```shell +module load s3fs/2023.12.2-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|s3fs/2023.12.2-foss-2023a|x|x|x|x|x|x| + + +### s3fs/2023.12.2-foss-2023a + +This is a list of extensions included in the module: + +aiobotocore-2.9.0, aioitertools-0.11.0, botocore-1.33.13, fsspec-2023.12.2, jmespath-1.0.1, s3fs-2023.12.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/samblaster.md b/mkdocs/docs/HPC/only/gent/available_software/detail/samblaster.md index a83b0e491926..369385c486c3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/samblaster.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/samblaster.md @@ -6,6 +6,10 @@ hide: samblaster ========== + +samblaster is a fast and flexible program for marking duplicates in read-id grouped1 paired-end SAM files. + +https://github.com/GregoryFaust/samblaster # Available modules @@ -17,8 +21,8 @@ To start using samblaster, load one of these modules using a `module load` comma module load samblaster/0.1.26-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|samblaster/0.1.26-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|samblaster/0.1.26-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/samclip.md b/mkdocs/docs/HPC/only/gent/available_software/detail/samclip.md index d386cb82f27d..86d8d64e7b57 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/samclip.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/samclip.md @@ -6,6 +6,10 @@ hide: samclip ======= + +Filter SAM file for soft and hard clipped alignments. + +https://github.com/tseemann/samclip # Available modules @@ -17,9 +21,9 @@ To start using samclip, load one of these modules using a `module load` command module load samclip/0.4.0-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|samclip/0.4.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|samclip/0.4.0-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|samclip/0.4.0-GCCcore-11.2.0|x|x|x|-|x|x| +|samclip/0.4.0-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sansa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sansa.md index 36cd81dc4981..a578dcef451f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sansa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sansa.md @@ -6,6 +6,10 @@ hide: sansa ===== + +Structural variant (SV) annotation, a companion to the 'dolly'tool. + +https://github.com/dellytools/sansa/ # Available modules @@ -17,8 +21,8 @@ To start using sansa, load one of these modules using a `module load` command li module load sansa/0.0.7-gompi-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|sansa/0.0.7-gompi-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|sansa/0.0.7-gompi-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sbt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sbt.md index a233ebc6f70e..63d85bfce5f8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sbt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sbt.md @@ -6,6 +6,10 @@ hide: sbt === + +sbt is a build tool for Scala, Java, and more. + +http://www.scala-sbt.org/ # Available modules @@ -17,8 +21,8 @@ To start using sbt, load one of these modules using a `module load` command like module load sbt/1.3.13-Java-1.8 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|sbt/1.3.13-Java-1.8|-|-|x|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|sbt/1.3.13-Java-1.8|-|-|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scArches.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scArches.md index 18abbb30b3ba..9260f657dfeb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scArches.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scArches.md @@ -6,6 +6,10 @@ hide: scArches ======== + +Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. + +https://github.com/theislab/scarches # Available modules @@ -17,9 +21,22 @@ To start using scArches, load one of these modules using a `module load` command module load scArches/0.5.6-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scArches/0.5.6-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|scArches/0.5.6-foss-2021a|x|x|x|x|x|x| + + +### scArches/0.5.6-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +gdown-4.6.0, muon-0.1.2, newick-1.4.0, scArches-0.5.6, scHPL-1.0.2, sklearn-0.0 + +### scArches/0.5.6-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scArches/0.5.6-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|scArches/0.5.6-foss-2021a|x|x|x|x|x|x|x|x| +gdown-4.6.0, muon-0.1.2, newick-1.4.0, scArches-0.5.6, scHPL-1.0.2, sklearn-0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scCODA.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scCODA.md new file mode 100644 index 000000000000..f869a53f0900 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scCODA.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +scCODA +====== + + +scCODA allows for identification of compositional changes in high-throughput sequencing count data,especially cell compositions from scRNA-seq. + +https://github.com/theislab/scCODA +# Available modules + + +The overview below shows which scCODA installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using scCODA, load one of these modules using a `module load` command like: + +```shell +module load scCODA/0.1.9-foss-2021a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scCODA/0.1.9-foss-2021a|x|x|x|x|x|x| + + +### scCODA/0.1.9-foss-2021a + +This is a list of extensions included in the module: + +scCODA-0.1.9 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scGeneFit.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scGeneFit.md index 4fe8761ad12d..d860d38a0d18 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scGeneFit.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scGeneFit.md @@ -6,6 +6,10 @@ hide: scGeneFit ========= + +Python code for genetic marker selection using linear programming. + +https://github.com/solevillar/scGeneFit-python # Available modules @@ -17,8 +21,8 @@ To start using scGeneFit, load one of these modules using a `module load` comman module load scGeneFit/1.0.2-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scGeneFit/1.0.2-foss-2021a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scGeneFit/1.0.2-foss-2021a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scHiCExplorer.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scHiCExplorer.md index 33953fc2d2a2..53a4e016db93 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scHiCExplorer.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scHiCExplorer.md @@ -6,6 +6,10 @@ hide: scHiCExplorer ============= + +The scHiCExplorer is a software to demultiplex, process, correct, normalize, manipulate, analyse andvisualize single-cell Hi-C data. + +https://schicexplorer.readthedocs.io # Available modules @@ -17,8 +21,15 @@ To start using scHiCExplorer, load one of these modules using a `module load` co module load scHiCExplorer/7-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scHiCExplorer/7-foss-2022a|x|x|x|x|x|x| + + +### scHiCExplorer/7-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scHiCExplorer/7-foss-2022a|x|x|x|x|x|x|x|x| +scHiCExplorer-7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scPred.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scPred.md index 56296998c6db..5a616b49f28c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scPred.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scPred.md @@ -6,6 +6,10 @@ hide: scPred ====== + +scPred package for cell type prediction from scRNA-seq data + +https://github.com/powellgenomicslab/scPred # Available modules @@ -17,8 +21,8 @@ To start using scPred, load one of these modules using a `module load` command l module load scPred/1.9.2-foss-2021b-R-4.1.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scPred/1.9.2-foss-2021b-R-4.1.2|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scPred/1.9.2-foss-2021b-R-4.1.2|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scVelo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scVelo.md index 44bc6f665795..e8f61ecaf1e7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scVelo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scVelo.md @@ -6,6 +6,10 @@ hide: scVelo ====== + +scVelo is a scalable toolkit for estimating and analyzing RNA velocities in single cells using dynamical modeling. + +https://scvelo.org # Available modules @@ -14,12 +18,32 @@ The overview below shows which scVelo installations are available per HPC-UGent To start using scVelo, load one of these modules using a `module load` command like: ```shell -module load scVelo/0.2.3-foss-2021a +module load scVelo/0.2.5-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scVelo/0.2.5-foss-2022a|x|x|x|x|x|x| +|scVelo/0.2.3-foss-2021a|-|x|x|-|x|x| +|scVelo/0.1.24-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### scVelo/0.2.5-foss-2022a + +This is a list of extensions included in the module: + +scVelo-0.2.5 + +### scVelo/0.2.3-foss-2021a + +This is a list of extensions included in the module: + +anndata-0.7.6, get_version-3.2, legacy-api-wrap-1.2, loompy-3.0.6, natsort-7.1.1, numpy-groupies-0.9.13, scanpy-1.8.1, scVelo-0.2.3, seaborn-0.11.1, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.4.6, xlrd-1.2.0 + +### scVelo/0.1.24-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scVelo/0.2.3-foss-2021a|-|x|x|-|x|x|x|x| -|scVelo/0.1.24-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +anndata-0.7.1, get_version-2.1, legacy-api-wrap-1.2, loompy-3.0.6, natsort-7.0.0, numpy-groupies-0.9.10, scanpy-1.4.5.post2, scVelo-0.1.24, seaborn-0.9.0, umap-learn-0.3.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scanpy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scanpy.md index 96c9a0de6e66..1ffe659c2c86 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scanpy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scanpy.md @@ -6,6 +6,10 @@ hide: scanpy ====== + +Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells. + +https://scanpy.readthedocs.io/en/stable/ # Available modules @@ -14,15 +18,53 @@ The overview below shows which scanpy installations are available per HPC-UGent To start using scanpy, load one of these modules using a `module load` command like: ```shell -module load scanpy/1.9.1-foss-2022a +module load scanpy/1.9.8-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scanpy/1.9.8-foss-2023a|x|x|x|x|x|x| +|scanpy/1.9.1-foss-2022a|x|x|x|x|x|x| +|scanpy/1.9.1-foss-2021b|x|x|x|x|x|x| +|scanpy/1.8.2-foss-2021b|x|x|x|x|x|x| +|scanpy/1.8.1-foss-2021a|x|x|x|x|x|x| +|scanpy/1.8.1-foss-2020b|-|x|x|x|x|x| + + +### scanpy/1.9.8-foss-2023a + +This is a list of extensions included in the module: + +joblib-1.3.2, legacy_api_wrap-1.4, natsort-8.4.0, packaging-23.2, scanpy-1.9.8, session-info-1.0.0, stdlib_list-0.10.0 + +### scanpy/1.9.1-foss-2022a + +This is a list of extensions included in the module: + +anndata-0.8.0, natsort-8.2.0, scanpy-1.9.1, session_info-1.0.0, sinfo-0.3.4, stdlib-list-0.8.0, xlrd-2.0.1 + +### scanpy/1.9.1-foss-2021b + +This is a list of extensions included in the module: + +anndata-0.8.0, natsort-8.2.0, pynndescent-0.5.8, scanpy-1.9.1, session_info-1.0.0, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.3, xlrd-2.0.1 + +### scanpy/1.8.2-foss-2021b + +This is a list of extensions included in the module: + +anndata-0.7.8, natsort-8.0.2, pynndescent-0.5.5, scanpy-1.8.2, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.2, xlrd-1.2.0 + +### scanpy/1.8.1-foss-2021a + +This is a list of extensions included in the module: + +anndata-0.7.6, natsort-7.1.1, pynndescent-0.5.4, scanpy-1.8.1, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.1, xlrd-1.2.0 + +### scanpy/1.8.1-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scanpy/1.9.1-foss-2022a|x|x|x|x|x|x|x|x| -|scanpy/1.9.1-foss-2021b|x|x|x|x|x|x|x|x| -|scanpy/1.8.2-foss-2021b|x|x|x|x|x|x|x|x| -|scanpy/1.8.1-foss-2021a|x|x|x|x|x|x|x|x| -|scanpy/1.8.1-foss-2020b|-|x|x|x|x|x|x|x| +anndata-0.7.6, natsort-7.1.1, pynndescent-0.5.4, scanpy-1.8.1, sinfo-0.3.4, stdlib-list-0.8.0, umap-learn-0.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sceasy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sceasy.md index 179440e26803..73d2fe615db3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sceasy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sceasy.md @@ -6,6 +6,10 @@ hide: sceasy ====== + +sceasy is a package that helps easy conversion of different single-cell data formats to each other + +https://github.com/cellgeni/sceasy # Available modules @@ -17,8 +21,8 @@ To start using sceasy, load one of these modules using a `module load` command l module load sceasy/0.0.7-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|sceasy/0.0.7-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|sceasy/0.0.7-foss-2022a-R-4.2.1|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scib-metrics.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scib-metrics.md new file mode 100644 index 000000000000..34e061f8d839 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scib-metrics.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +scib-metrics +============ + + +Accelerated and Python-only metrics for benchmarking single-cell integration outputs + +https://scib-metrics.readthedocs.io +# Available modules + + +The overview below shows which scib-metrics installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using scib-metrics, load one of these modules using a `module load` command like: + +```shell +module load scib-metrics/0.3.3-foss-2021a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scib-metrics/0.3.3-foss-2021a|x|x|x|x|x|x| + + +### scib-metrics/0.3.3-foss-2021a + +This is a list of extensions included in the module: + +chex-0.1.6, markdown-it-py-2.2.0, mdurl-0.1.2, plottable-0.1.5, pynndescent-0.5.10, rich-13.2.0, scib-metrics-0.3.3, setuptools-68.1.2, toolz-0.12.0, typing-extensions-4.7.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scib.md index b066c098953c..f2e6d6929ed2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scib.md @@ -6,6 +6,10 @@ hide: scib ==== + +Benchmarking atlas-level data integration in single-cell genomics. + +https://github.com/theislab/scib # Available modules @@ -17,8 +21,8 @@ To start using scib, load one of these modules using a `module load` command lik module load scib/1.1.3-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scib/1.1.3-foss-2021a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scib/1.1.3-foss-2021a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-bio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-bio.md new file mode 100644 index 000000000000..6b30dbf62147 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-bio.md @@ -0,0 +1,42 @@ +--- +hide: + - toc +--- + +scikit-bio +========== + + +scikit-bio is an open-source, BSD-licensed Python 3 package providing data structures, algorithmsand educational resources for bioinformatics. + +http://scikit-bio.org +# Available modules + + +The overview below shows which scikit-bio installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using scikit-bio, load one of these modules using a `module load` command like: + +```shell +module load scikit-bio/0.5.7-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scikit-bio/0.5.7-foss-2022a|x|x|x|x|x|x| +|scikit-bio/0.5.7-foss-2021a|x|x|x|x|x|x| + + +### scikit-bio/0.5.7-foss-2022a + +This is a list of extensions included in the module: + +CacheControl-0.12.11, hdmedians-0.14.2, lockfile-0.12.2, msgpack-1.0.4, natsort-8.1.0, scikit-bio-0.5.7 + +### scikit-bio/0.5.7-foss-2021a + +This is a list of extensions included in the module: + +CacheControl-0.12.14, hdmedians-0.14.2, lockfile-0.12.2, msgpack-1.0.5, natsort-8.4.0, scikit-bio-0.5.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build.md index a4a123a61d05..b95fae3cdd79 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-build.md @@ -6,6 +6,10 @@ hide: scikit-build ============ + +Scikit-Build, or skbuild, is an improved build system generatorfor CPython C/C++/Fortran/Cython extensions. + +https://scikit-build.readthedocs.io/en/latest # Available modules @@ -14,15 +18,60 @@ The overview below shows which scikit-build installations are available per HPC- To start using scikit-build, load one of these modules using a `module load` command like: ```shell -module load scikit-build/0.17.6-GCCcore-12.3.0 +module load scikit-build/0.17.6-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scikit-build/0.17.6-GCCcore-13.2.0|x|x|x|x|x|x| +|scikit-build/0.17.6-GCCcore-12.3.0|x|x|x|x|x|x| +|scikit-build/0.17.2-GCCcore-12.2.0|x|x|x|x|x|x| +|scikit-build/0.15.0-GCCcore-11.3.0|x|x|x|x|x|x| +|scikit-build/0.11.1-fosscuda-2020b|x|-|-|-|x|-| +|scikit-build/0.11.1-foss-2020b|-|x|x|x|x|x| +|scikit-build/0.11.1-GCCcore-10.3.0|x|-|x|-|x|-| + + +### scikit-build/0.17.6-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +distro-1.8.0, packaging-23.1, scikit_build-0.17.6 + +### scikit-build/0.17.6-GCCcore-12.3.0 + +This is a list of extensions included in the module: + +distro-1.8.0, packaging-23.1, scikit_build-0.17.6 + +### scikit-build/0.17.2-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +distro-1.8.0, scikit_build-0.17.2 + +### scikit-build/0.15.0-GCCcore-11.3.0 + +This is a list of extensions included in the module: + +distro-1.7.0, scikit-build-0.15.0 + +### scikit-build/0.11.1-fosscuda-2020b + +This is a list of extensions included in the module: + +distro-1.5.0, scikit-build-0.11.1 + +### scikit-build/0.11.1-foss-2020b + +This is a list of extensions included in the module: + +distro-1.5.0, scikit-build-0.11.1 + +### scikit-build/0.11.1-GCCcore-10.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scikit-build/0.17.6-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|scikit-build/0.15.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|scikit-build/0.11.1-fosscuda-2020b|x|-|-|-|x|-|-|-| -|scikit-build/0.11.1-foss-2020b|-|x|x|x|x|x|x|x| -|scikit-build/0.11.1-GCCcore-10.3.0|x|-|x|-|x|-|-|-| +distro-1.5.0, scikit-build-0.11.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-extremes.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-extremes.md new file mode 100644 index 000000000000..052cd5ad8af9 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-extremes.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +scikit-extremes +=============== + + +scikit-extremes is a basic statistical package to perform univariate extreme value calculations using Python + +https://github.com/kikocorreoso/scikit-extremes +# Available modules + + +The overview below shows which scikit-extremes installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using scikit-extremes, load one of these modules using a `module load` command like: + +```shell +module load scikit-extremes/2022.4.10-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scikit-extremes/2022.4.10-foss-2022a|x|x|x|x|x|x| + + +### scikit-extremes/2022.4.10-foss-2022a + +This is a list of extensions included in the module: + +numdifftools-0.9.41, scikit-extremes-2022.4.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-image.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-image.md index 1d733ef84a72..b12cf81ddf25 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-image.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-image.md @@ -6,6 +6,10 @@ hide: scikit-image ============ + +scikit-image is a collection of algorithms for image processing. + +https://scikit-image.org/ # Available modules @@ -17,15 +21,64 @@ To start using scikit-image, load one of these modules using a `module load` com module load scikit-image/0.19.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scikit-image/0.19.3-foss-2022a|x|x|x|x|x|x|x|x| -|scikit-image/0.19.1-foss-2021b|x|x|x|x|x|x|x|x| -|scikit-image/0.18.3-foss-2021a|x|x|x|-|x|x|x|x| -|scikit-image/0.18.1-fosscuda-2020b|x|-|-|-|x|-|-|-| -|scikit-image/0.18.1-foss-2020b|-|x|x|x|x|x|x|x| -|scikit-image/0.17.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|scikit-image/0.16.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|scikit-image/0.16.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scikit-image/0.19.3-foss-2022a|x|x|x|x|x|x| +|scikit-image/0.19.1-foss-2021b|x|x|x|x|x|x| +|scikit-image/0.18.3-foss-2021a|x|x|x|-|x|x| +|scikit-image/0.18.1-fosscuda-2020b|x|-|-|-|x|-| +|scikit-image/0.18.1-foss-2020b|-|x|x|x|x|x| +|scikit-image/0.17.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|scikit-image/0.16.2-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|scikit-image/0.16.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### scikit-image/0.19.3-foss-2022a + +This is a list of extensions included in the module: + +imread-0.7.4, pooch-1.6.0, PyWavelets-1.4.1, scikit-image-0.19.3, tifffile-2022.10.10 + +### scikit-image/0.19.1-foss-2021b + +This is a list of extensions included in the module: + +imread-0.7.4, pooch-1.5.2, PyWavelets-1.2.0, scikit-image-0.19.1, tifffile-2021.11.2 + +### scikit-image/0.18.3-foss-2021a + +This is a list of extensions included in the module: + +imageio-2.9.0, imread-0.7.4, pooch-1.5.2, PyWavelets-1.1.1, scikit-image-0.18.3, tifffile-2021.10.12 + +### scikit-image/0.18.1-fosscuda-2020b + +This is a list of extensions included in the module: + +imageio-2.9.0, imread-0.7.4, pooch-1.3.0, PyWavelets-1.1.1, scikit-image-0.18.1, tifffile-2021.2.1 + +### scikit-image/0.18.1-foss-2020b + +This is a list of extensions included in the module: + +imageio-2.9.0, imread-0.7.4, pooch-1.3.0, PyWavelets-1.1.1, scikit-image-0.18.1, tifffile-2021.2.1 + +### scikit-image/0.17.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +imageio-2.9.0, imread-0.7.4, networkx-2.4, pooch-1.1.1, PyWavelets-1.1.1, scikit-image-0.17.1, tifffile-2020.7.17 + +### scikit-image/0.16.2-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +imageio-2.6.1, imread-0.7.1, networkx-2.4, PyWavelets-1.1.1, scikit-image-0.16.2 + +### scikit-image/0.16.2-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +imageio-2.6.1, imread-0.7.1, networkx-2.4, PyWavelets-1.1.1, scikit-image-0.16.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-learn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-learn.md index ede7df6009ef..f72d20e46187 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-learn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-learn.md @@ -6,6 +6,10 @@ hide: scikit-learn ============ + +Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world,building upon numpy, scipy, and matplotlib. As a machine-learning module,it provides versatile tools for data mining and analysis in any field of science and engineering.It strives to be simple and efficient, accessible to everybody, and reusable in various contexts. + +https://scikit-learn.org/stable/index.html # Available modules @@ -14,25 +18,96 @@ The overview below shows which scikit-learn installations are available per HPC- To start using scikit-learn, load one of these modules using a `module load` command like: ```shell -module load scikit-learn/1.2.1-gfbf-2022b +module load scikit-learn/1.4.0-gfbf-2023b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scikit-learn/1.2.1-gfbf-2022b|x|x|x|x|x|x|x|x| -|scikit-learn/1.1.2-intel-2022a|x|x|x|x|x|x|x|x| -|scikit-learn/1.1.2-foss-2022a|x|x|x|x|x|x|x|x| -|scikit-learn/1.0.1-intel-2021b|x|x|x|-|x|x|x|x| -|scikit-learn/1.0.1-foss-2021b|x|x|x|x|x|x|x|x| -|scikit-learn/0.24.2-foss-2021a|x|x|x|x|x|x|x|x| -|scikit-learn/0.23.2-intel-2020b|-|x|x|-|x|x|x|x| -|scikit-learn/0.23.2-fosscuda-2020b|x|-|-|-|x|-|-|-| -|scikit-learn/0.23.2-foss-2020b|-|x|x|x|x|x|x|x| -|scikit-learn/0.23.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|scikit-learn/0.23.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|scikit-learn/0.21.3-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|scikit-learn/0.21.3-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|scikit-learn/0.20.4-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| -|scikit-learn/0.20.4-foss-2020b-Python-2.7.18|-|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scikit-learn/1.4.0-gfbf-2023b|x|x|x|x|x|x| +|scikit-learn/1.3.2-gfbf-2023b|x|x|x|x|x|x| +|scikit-learn/1.3.1-gfbf-2023a|x|x|x|x|x|x| +|scikit-learn/1.2.1-gfbf-2022b|x|x|x|x|x|x| +|scikit-learn/1.1.2-intel-2022a|x|x|x|x|x|x| +|scikit-learn/1.1.2-foss-2022a|x|x|x|x|x|x| +|scikit-learn/1.0.1-intel-2021b|x|x|x|-|x|x| +|scikit-learn/1.0.1-foss-2021b|x|x|x|x|x|x| +|scikit-learn/0.24.2-foss-2021a|x|x|x|x|x|x| +|scikit-learn/0.23.2-intel-2020b|-|x|x|-|x|x| +|scikit-learn/0.23.2-fosscuda-2020b|x|-|-|-|x|-| +|scikit-learn/0.23.2-foss-2020b|-|x|x|x|x|x| +|scikit-learn/0.23.1-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|scikit-learn/0.23.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|scikit-learn/0.21.3-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|scikit-learn/0.21.3-foss-2019b-Python-3.7.4|x|x|x|-|x|x| +|scikit-learn/0.20.4-intel-2019b-Python-2.7.16|-|x|x|-|x|x| +|scikit-learn/0.20.4-foss-2021b-Python-2.7.18|x|x|x|x|x|x| +|scikit-learn/0.20.4-foss-2020b-Python-2.7.18|-|x|x|x|x|x| + + +### scikit-learn/1.4.0-gfbf-2023b + +This is a list of extensions included in the module: + +scikit-learn-1.4.0, sklearn-0.0 + +### scikit-learn/1.3.2-gfbf-2023b + +This is a list of extensions included in the module: + +scikit-learn-1.3.2, sklearn-0.0 + +### scikit-learn/1.3.1-gfbf-2023a + +This is a list of extensions included in the module: + +scikit-learn-1.3.1, sklearn-0.0 + +### scikit-learn/1.2.1-gfbf-2022b + +This is a list of extensions included in the module: + +scikit-learn-1.2.1, sklearn-0.0 + +### scikit-learn/1.1.2-intel-2022a + +This is a list of extensions included in the module: + +scikit-learn-1.1.2, sklearn-0.0 + +### scikit-learn/1.1.2-foss-2022a + +This is a list of extensions included in the module: + +scikit-learn-1.1.2, sklearn-0.0 + +### scikit-learn/1.0.1-intel-2021b + +This is a list of extensions included in the module: + +scikit-learn-1.0.1, sklearn-0.0 + +### scikit-learn/1.0.1-foss-2021b + +This is a list of extensions included in the module: + +scikit-learn-1.0.1, sklearn-0.0 + +### scikit-learn/0.23.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +flit-2.3.0, flit-core-2.3.0, pytoml-0.1.21, scikit-learn-0.23.1, threadpoolctl-2.1.0 + +### scikit-learn/0.23.1-foss-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +flit-2.3.0, flit-core-2.3.0, pytoml-0.1.21, scikit-learn-0.23.1, threadpoolctl-2.1.0 + +### scikit-learn/0.20.4-foss-2021b-Python-2.7.18 + +This is a list of extensions included in the module: + +scikit-learn-0.20.4, sklearn-0.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-misc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-misc.md index 784b985387a0..2d0683f81355 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-misc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-misc.md @@ -6,6 +6,10 @@ hide: scikit-misc =========== + +Miscellaneous tools for data analysis and scientific computing + +https://github.com/has2k1/scikit-misc # Available modules @@ -17,8 +21,8 @@ To start using scikit-misc, load one of these modules using a `module load` comm module load scikit-misc/0.1.4-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scikit-misc/0.1.4-foss-2021a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scikit-misc/0.1.4-foss-2021a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-optimize.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-optimize.md index 5b158e20bb9b..7fd078cd4638 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-optimize.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scikit-optimize.md @@ -6,6 +6,10 @@ hide: scikit-optimize =============== + +Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) expensive and noisy black-box functions. + +https://scikit-optimize.github.io # Available modules @@ -17,8 +21,8 @@ To start using scikit-optimize, load one of these modules using a `module load` module load scikit-optimize/0.9.0-foss-2021a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scikit-optimize/0.9.0-foss-2021a|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scikit-optimize/0.9.0-foss-2021a|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scipy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scipy.md index 4309838bda31..d1ec729b430e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scipy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scipy.md @@ -6,6 +6,10 @@ hide: scipy ===== + +SciPy is a collection of mathematical algorithms and convenience functions built on the Numpy extension for Python. + +https://www.scipy.org # Available modules @@ -17,8 +21,8 @@ To start using scipy, load one of these modules using a `module load` command li module load scipy/1.4.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scipy/1.4.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scipy/1.4.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scrublet.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scrublet.md new file mode 100644 index 000000000000..5353cf317040 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scrublet.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +scrublet +======== + + +Single-Cell Remover of Doublets - Python code for identifying doublets in single-cell RNA-seq data + +https://github.com/swolock/scrublet +# Available modules + + +The overview below shows which scrublet installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using scrublet, load one of these modules using a `module load` command like: + +```shell +module load scrublet/0.2.3-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scrublet/0.2.3-foss-2022a|x|x|x|x|x|x| + + +### scrublet/0.2.3-foss-2022a + +This is a list of extensions included in the module: + +annoy-1.17.1, pynndescent-0.5.7, scrublet-0.2.3, umap-learn-0.5.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/scvi-tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/scvi-tools.md index 3edda786c2ea..77ccb43d37bf 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/scvi-tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/scvi-tools.md @@ -6,6 +6,10 @@ hide: scvi-tools ========== + +scvi-tools (single-cell variational inference tools) is a package for probabilistic modeling andanalysis of single-cell omics data, built on top of PyTorch and AnnData. + +https://github.com/scverse/scvi-tools # Available modules @@ -17,9 +21,22 @@ To start using scvi-tools, load one of these modules using a `module load` comma module load scvi-tools/0.16.4-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|scvi-tools/0.16.4-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|scvi-tools/0.16.4-foss-2021a|x|x|x|x|x|x| + + +### scvi-tools/0.16.4-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +anndata-0.8.0, chex-0.1.5, commonmark-0.9.1, contextlib2-21.6.0, docrep-0.3.2, flax-0.5.2, ml_collections-0.1.1, mudata-0.2.0, multipledispatch-0.6.0, natsort-8.1.0, numpyro-0.10.1, optax-0.1.3, pyro-api-0.1.2, pyro-ppl-1.8.0, rich-11.1.0, scvi-tools-0.16.4, toolz-0.12.0, typing_extensions-4.4.0 + +### scvi-tools/0.16.4-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|scvi-tools/0.16.4-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|scvi-tools/0.16.4-foss-2021a|x|x|x|x|x|x|x|x| +anndata-0.8.0, chex-0.1.5, commonmark-0.9.1, contextlib2-21.6.0, docrep-0.3.2, flax-0.5.2, ml_collections-0.1.1, mudata-0.2.0, multipledispatch-0.6.0, natsort-8.1.0, numpyro-0.10.1, optax-0.1.3, pyro-api-0.1.2, pyro-ppl-1.8.0, rich-11.1.0, scvi-tools-0.16.4, toolz-0.12.0, typing_extensions-4.4.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/segemehl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/segemehl.md index 883924d299e0..fbfa70b703a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/segemehl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/segemehl.md @@ -6,6 +6,10 @@ hide: segemehl ======== + +segemehl is a software to map short sequencer reads to reference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is able to mapprimer- or polyadenylation contaminated reads correctly. segemehl implements a matching strategy based on enhanced suffix arrays (ESA). Segemehl now supports the SAM format, reads gziped queries to save both disk and memory space and allows bisulfite sequencing mapping and split read mapping. + +https://www.bioinf.uni-leipzig.de/Software/segemehl/ # Available modules @@ -14,11 +18,12 @@ The overview below shows which segemehl installations are available per HPC-UGen To start using segemehl, load one of these modules using a `module load` command like: ```shell -module load segemehl/0.3.4-GCC-10.2.0 +module load segemehl/0.3.4-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|segemehl/0.3.4-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|segemehl/0.3.4-GCC-11.2.0|x|x|x|x|x|x| +|segemehl/0.3.4-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/segmentation-models.md b/mkdocs/docs/HPC/only/gent/available_software/detail/segmentation-models.md index b6daa148b176..7779c4dc31e8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/segmentation-models.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/segmentation-models.md @@ -6,6 +6,10 @@ hide: segmentation-models =================== + +Python library with Neural Networks for Image Segmentation based on Keras and TensorFlow. + +https://github.com/qubvel/segmentation_models # Available modules @@ -17,8 +21,15 @@ To start using segmentation-models, load one of these modules using a `module lo module load segmentation-models/1.0.1-foss-2019b-Python-3.7.4 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|segmentation-models/1.0.1-foss-2019b-Python-3.7.4|-|x|-|-|-|x| + + +### segmentation-models/1.0.1-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|segmentation-models/1.0.1-foss-2019b-Python-3.7.4|-|x|-|-|-|x|-|x| +efficientnet-1.0.0, image_classifiers-1.0.0, imageio-2.8.0, PyWavelets-1.1.1, segmentation_models-1.0.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/semla.md b/mkdocs/docs/HPC/only/gent/available_software/detail/semla.md new file mode 100644 index 000000000000..e4af9f21c336 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/semla.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +semla +===== + + +R interface to the Apache Arrow C++ library + +https://cran.r-project.org/web/packages/arrow +# Available modules + + +The overview below shows which semla installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using semla, load one of these modules using a `module load` command like: + +```shell +module load semla/1.1.6-foss-2023a-R-4.3.2 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|semla/1.1.6-foss-2023a-R-4.3.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/seqtk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/seqtk.md index 2f51e57c4be3..70ba28024d13 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/seqtk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/seqtk.md @@ -6,6 +6,10 @@ hide: seqtk ===== + +Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip. + +https://github.com/lh3/seqtk/ # Available modules @@ -14,13 +18,14 @@ The overview below shows which seqtk installations are available per HPC-UGent T To start using seqtk, load one of these modules using a `module load` command like: ```shell -module load seqtk/1.3-GCC-11.2.0 +module load seqtk/1.4-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|seqtk/1.3-GCC-11.2.0|x|x|x|-|x|x|x|x| -|seqtk/1.3-GCC-10.2.0|-|x|x|x|x|x|x|x| -|seqtk/1.3-GCC-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|seqtk/1.4-GCC-12.3.0|x|x|x|x|x|x| +|seqtk/1.3-GCC-11.2.0|x|x|x|-|x|x| +|seqtk/1.3-GCC-10.2.0|-|x|x|x|x|x| +|seqtk/1.3-GCC-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools-rust.md b/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools-rust.md index f7b6bd6be5aa..0b94c3ac98d3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools-rust.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools-rust.md @@ -6,6 +6,10 @@ hide: setuptools-rust =============== + +setuptools-rust is a plugin for setuptools to build Rust Python extensionsimplemented with PyO3 or rust-cpython. + +https://github.com/PyO3/setuptools-rust # Available modules @@ -14,11 +18,25 @@ The overview below shows which setuptools-rust installations are available per H To start using setuptools-rust, load one of these modules using a `module load` command like: ```shell -module load setuptools-rust/1.6.0-GCCcore-12.3.0 +module load setuptools-rust/1.8.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|setuptools-rust/1.8.0-GCCcore-13.2.0|x|x|x|x|x|x| +|setuptools-rust/1.6.0-GCCcore-12.3.0|x|x|x|x|x|x| + + +### setuptools-rust/1.8.0-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +semantic_version-2.10.0, setuptools-rust-1.8.0, typing_extensions-4.8.0 + +### setuptools-rust/1.6.0-GCCcore-12.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|setuptools-rust/1.6.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| +semantic_version-2.10.0, setuptools-rust-1.6.0, typing_extensions-4.6.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools.md new file mode 100644 index 000000000000..541727266f8f --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/setuptools.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +setuptools +========== + + +Easily download, build, install, upgrade, and uninstall Python packages + +https://pypi.org/project/setuptools +# Available modules + + +The overview below shows which setuptools installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using setuptools, load one of these modules using a `module load` command like: + +```shell +module load setuptools/64.0.3-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|setuptools/64.0.3-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sf.md index ca9fc2e9ea12..3655e76b9033 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sf.md @@ -6,6 +6,10 @@ hide: sf == + +Support for simple features, a standardized way to encode spatial vector data. Binds to GDAL forreading and writing data, to GEOS for geometrical operations, and to PROJ for projection conversions and datumtransformations. + +https://cran.r-project.org/package=sf # Available modules @@ -17,8 +21,8 @@ To start using sf, load one of these modules using a `module load` command like: module load sf/0.9-5-foss-2020a-R-4.0.0-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|sf/0.9-5-foss-2020a-R-4.0.0-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|sf/0.9-5-foss-2020a-R-4.0.0-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/shovill.md b/mkdocs/docs/HPC/only/gent/available_software/detail/shovill.md index 1631febb9e13..4004f0e3279e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/shovill.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/shovill.md @@ -6,6 +6,10 @@ hide: shovill ======= + +Faster SPAdes assembly of Illumina reads + +https://github.com/tseemann/shovill # Available modules @@ -17,8 +21,8 @@ To start using shovill, load one of these modules using a `module load` command module load shovill/1.1.0-gompi-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|shovill/1.1.0-gompi-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|shovill/1.1.0-gompi-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/silhouetteRank.md b/mkdocs/docs/HPC/only/gent/available_software/detail/silhouetteRank.md index 9f06def7d31d..958988e75da1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/silhouetteRank.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/silhouetteRank.md @@ -6,6 +6,10 @@ hide: silhouetteRank ============== + +silhouetteRank is a tool for finding spatially variable genes based on computing silhouette coefficient from binarized spatial gene expression data + +https://pypi.org/project/silhouetteRank # Available modules @@ -17,8 +21,8 @@ To start using silhouetteRank, load one of these modules using a `module load` c module load silhouetteRank/1.0.5.13-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|silhouetteRank/1.0.5.13-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|silhouetteRank/1.0.5.13-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/silx.md b/mkdocs/docs/HPC/only/gent/available_software/detail/silx.md index 4cc6320c65aa..d0cd09ca9002 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/silx.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/silx.md @@ -6,6 +6,10 @@ hide: silx ==== + +The silx project provides a collection of Python packages to support the development of data assessment, reduction and analysis applications at synchrotron radiation facilities. + +http://www.silx.org/ # Available modules @@ -17,8 +21,15 @@ To start using silx, load one of these modules using a `module load` command lik module load silx/0.14.0-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|silx/0.14.0-foss-2020b|-|x|x|x|x|x| + + +### silx/0.14.0-foss-2020b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|silx/0.14.0-foss-2020b|-|x|x|x|x|x|x|x| +hdf5plugin-2.3.1, silx-0.14.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/slepc4py.md b/mkdocs/docs/HPC/only/gent/available_software/detail/slepc4py.md index 9e488e442498..bd27e76bd5b0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/slepc4py.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/slepc4py.md @@ -6,6 +6,10 @@ hide: slepc4py ======== + +Python bindings for SLEPc, the Scalable Library for Eigenvalue Problem Computations. + +https://bitbucket.org/slepc/slepc4py # Available modules @@ -14,12 +18,13 @@ The overview below shows which slepc4py installations are available per HPC-UGen To start using slepc4py, load one of these modules using a `module load` command like: ```shell -module load slepc4py/3.15.1-foss-2021a +module load slepc4py/3.17.2-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|slepc4py/3.15.1-foss-2021a|-|x|x|-|x|x|x|x| -|slepc4py/3.12.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|slepc4py/3.17.2-foss-2022a|x|x|x|x|x|x| +|slepc4py/3.15.1-foss-2021a|-|x|x|-|x|x| +|slepc4py/3.12.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/slow5tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/slow5tools.md index b3003e7b129f..d30dcd590ca8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/slow5tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/slow5tools.md @@ -6,6 +6,10 @@ hide: slow5tools ========== + +slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format. + +https://hasindu2008.github.io/slow5tools # Available modules @@ -17,8 +21,8 @@ To start using slow5tools, load one of these modules using a `module load` comma module load slow5tools/0.4.0-gompi-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|slow5tools/0.4.0-gompi-2021b|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|slow5tools/0.4.0-gompi-2021b|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/slurm-drmaa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/slurm-drmaa.md new file mode 100644 index 000000000000..1c7f9b1c1845 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/slurm-drmaa.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +slurm-drmaa +=========== + + +DRMAA for Slurm Workload Manager (Slurm) is an implementation of Open Grid Forum Distributed Resource Management Application API (DRMAA) version 1 for submission and control of jobs to Slurm. Using DRMAA, grid applications builders, portal developers and ISVs can use the same high-level API to link their software with different cluster/resource management systems. + +https://github.com/natefoo/slurm-drmaa +# Available modules + + +The overview below shows which slurm-drmaa installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using slurm-drmaa, load one of these modules using a `module load` command like: + +```shell +module load slurm-drmaa/1.1.3-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|slurm-drmaa/1.1.3-GCCcore-12.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/smfishHmrf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/smfishHmrf.md index 41cf9585a60c..a9a649787a2b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/smfishHmrf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/smfishHmrf.md @@ -6,6 +6,10 @@ hide: smfishHmrf ========== + +smFish spatial pattern mining and cell type prediction + +https://pypi.org/project/smfishHmrf # Available modules @@ -17,8 +21,8 @@ To start using smfishHmrf, load one of these modules using a `module load` comma module load smfishHmrf/1.3.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|smfishHmrf/1.3.3-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|smfishHmrf/1.3.3-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/smithwaterman.md b/mkdocs/docs/HPC/only/gent/available_software/detail/smithwaterman.md index ac22adffc20e..f15e5cc50041 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/smithwaterman.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/smithwaterman.md @@ -6,6 +6,10 @@ hide: smithwaterman ============= + +smith-waterman-gotoh alignment algorithm. + +https://github.com/ekg/smithwaterman # Available modules @@ -14,11 +18,12 @@ The overview below shows which smithwaterman installations are available per HPC To start using smithwaterman, load one of these modules using a `module load` command like: ```shell -module load smithwaterman/20160702-GCCcore-10.2.0 +module load smithwaterman/20160702-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|smithwaterman/20160702-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|smithwaterman/20160702-GCCcore-11.3.0|x|x|x|x|x|x| +|smithwaterman/20160702-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/smooth-topk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/smooth-topk.md index b74d84d66280..975ec4292dbd 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/smooth-topk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/smooth-topk.md @@ -6,6 +6,10 @@ hide: smooth-topk =========== + +Smooth Loss Functions for Deep Top-k Classification + +https://github.com/oval-group/smooth-topk # Available modules @@ -17,9 +21,22 @@ To start using smooth-topk, load one of these modules using a `module load` comm module load smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|smooth-topk/1.0-20210817-foss-2021a|-|x|x|-|x|x| + + +### smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1 + +This is a list of extensions included in the module: + +logger-1.4, smooth-topk-1.0-20210817 + +### smooth-topk/1.0-20210817-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|smooth-topk/1.0-20210817-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|smooth-topk/1.0-20210817-foss-2021a|-|x|x|-|x|x|x|x| +logger-1.4, smooth-topk-1.0-20210817 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snakemake.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snakemake.md index 6e36215dbbe8..b773007ffbc5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/snakemake.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/snakemake.md @@ -6,6 +6,10 @@ hide: snakemake ========= + +The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. + +https://snakemake.readthedocs.io # Available modules @@ -14,15 +18,60 @@ The overview below shows which snakemake installations are available per HPC-UGe To start using snakemake, load one of these modules using a `module load` command like: ```shell -module load snakemake/7.22.0-foss-2022a +module load snakemake/8.4.2-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|snakemake/8.4.2-foss-2023a|x|x|x|x|x|x| +|snakemake/7.32.3-foss-2022b|x|x|x|x|x|x| +|snakemake/7.22.0-foss-2022a|x|x|x|x|x|x| +|snakemake/7.18.2-foss-2021b|x|x|x|-|x|x| +|snakemake/6.10.0-foss-2021b|x|x|x|-|x|x| +|snakemake/6.1.0-foss-2020b|-|x|x|x|x|x| +|snakemake/5.26.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x| + + +### snakemake/8.4.2-foss-2023a + +This is a list of extensions included in the module: + +argparse-dataclass-2.0.0, conda-inject-1.3.1, ConfigArgParse-1.7, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.6, fastjsonschema-2.19.1, humanfriendly-10.0, immutables-0.20, jupyter-core-5.7.1, nbformat-5.9.2, plac-1.4.2, reretry-0.11.8, smart-open-6.4.0, snakemake-8.4.2, snakemake-executor-plugin-cluster-generic-1.0.7, snakemake-executor-plugin-cluster-sync-0.1.3, snakemake-executor-plugin-flux-0.1.0, snakemake-executor-plugin-slurm-0.2.1, snakemake-executor-plugin-slurm-jobstep-0.1.10, snakemake-interface-common-1.15.2, snakemake-interface-executor-plugins-8.2.0, snakemake-interface-storage-plugins-3.0.0, stopit-1.1.2, throttler-1.2.2, toposort-1.10, yte-1.5.4 + +### snakemake/7.32.3-foss-2022b + +This is a list of extensions included in the module: + +amply-0.1.6, ConfigArgParse-1.7, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.6, fastjsonschema-2.18.0, humanfriendly-10.0, jupyter-core-5.3.1, nbformat-5.9.2, plac-1.3.5, reretry-0.11.8, smart-open-6.3.0, snakemake-7.32.3, stopit-1.1.2, throttler-1.2.2, toposort-1.10, yte-1.5.1 + +### snakemake/7.22.0-foss-2022a + +This is a list of extensions included in the module: + +amply-0.1.5, ConfigArgParse-1.5.3, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.4, humanfriendly-10.0, plac-1.3.5, PuLP-2.7.0, reretry-0.11.8, smart-open-6.3.0, snakemake-7.22.0, stopit-1.1.2, throttler-1.2.2, toposort-1.9, wrapt-1.14.1, yte-1.5.1 + +### snakemake/7.18.2-foss-2021b + +This is a list of extensions included in the module: + +amply-0.1.5, ConfigArgParse-1.5.3, connection_pool-0.0.3, datrie-0.8.2, dpath-2.0.6, plac-1.3.5, PuLP-2.7.0, PyYAML-6.0, ratelimiter-1.2.0.post0, reretry-0.11.1, smart_open-6.2.0, snakemake-7.18.2, stopit-1.1.2, throttler-1.2.1, toposort-1.7, wrapt-1.14.1, yte-1.5.1 + +### snakemake/6.10.0-foss-2021b + +This is a list of extensions included in the module: + +amply-0.1.4, ConfigArgParse-1.5.3, connection_pool-0.0.3, datrie-0.8.2, PuLP-2.5.1, ratelimiter-1.2.0.post0, smart_open-5.2.1, snakemake-6.10.0, stopit-1.1.2, toposort-1.7, wrapt-1.13.3 + +### snakemake/6.1.0-foss-2020b + +This is a list of extensions included in the module: + +amply-0.1.4, ConfigArgParse-1.4, datrie-0.8.2, PuLP-2.4, ratelimiter-1.2.0.post0, smart_open-4.1.2, snakemake-6.1.0, toposort-1.6, wrapt-1.12.1 + +### snakemake/5.26.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|snakemake/7.22.0-foss-2022a|x|x|x|x|x|x|x|x| -|snakemake/7.18.2-foss-2021b|x|x|x|-|x|x|x|x| -|snakemake/6.10.0-foss-2021b|x|x|x|-|x|x|x|x| -|snakemake/6.1.0-foss-2020b|-|x|x|x|x|x|x|x| -|snakemake/5.26.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +amply-0.1.4, ConfigArgParse-1.2.3, datrie-0.8.2, ipython_genutils-0.2.0, jsonschema-3.2.0, jupyter-core-4.6.3, nbformat-5.0.8, PuLP-2.3, pyrsistent-0.17.3, ratelimiter-1.2.0.post0, snakemake-5.26.1, toposort-1.5, traitlets-5.0.5, wrapt-1.12.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snappy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snappy.md index 13f80b61c700..d8424889f86a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/snappy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/snappy.md @@ -6,6 +6,10 @@ hide: snappy ====== + +Snappy is a compression/decompression library. It does not aimfor maximum compression, or compatibility with any other compression library;instead, it aims for very high speeds and reasonable compression. + +https://github.com/google/snappy # Available modules @@ -14,17 +18,18 @@ The overview below shows which snappy installations are available per HPC-UGent To start using snappy, load one of these modules using a `module load` command like: ```shell -module load snappy/1.1.9-GCCcore-12.2.0 +module load snappy/1.1.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|snappy/1.1.9-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|snappy/1.1.9-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|snappy/1.1.9-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|snappy/1.1.8-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|snappy/1.1.8-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|snappy/1.1.8-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|snappy/1.1.7-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|snappy/1.1.10-GCCcore-12.3.0|x|x|x|x|x|x| +|snappy/1.1.9-GCCcore-12.2.0|x|x|x|x|x|x| +|snappy/1.1.9-GCCcore-11.3.0|x|x|x|x|x|x| +|snappy/1.1.9-GCCcore-11.2.0|x|x|x|x|x|x| +|snappy/1.1.8-GCCcore-10.3.0|x|x|x|x|x|x| +|snappy/1.1.8-GCCcore-10.2.0|x|x|x|x|x|x| +|snappy/1.1.8-GCCcore-9.3.0|-|x|x|-|x|x| +|snappy/1.1.7-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snippy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snippy.md index 82ed2f3de0b7..45accf14ab1c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/snippy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/snippy.md @@ -6,6 +6,10 @@ hide: snippy ====== + +Rapid haploid variant calling and core genome alignment + +https://github.com/tseemann/snippy # Available modules @@ -17,8 +21,8 @@ To start using snippy, load one of these modules using a `module load` command l module load snippy/4.6.0-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|snippy/4.6.0-GCC-10.2.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|snippy/4.6.0-GCC-10.2.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snp-sites.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snp-sites.md index 0b4f781ebe9c..93896faf221d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/snp-sites.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/snp-sites.md @@ -6,6 +6,10 @@ hide: snp-sites ========= + +Finds SNP sites from a multi-FASTA alignment file. + +https://sanger-pathogens.github.io/snp-sites/ # Available modules @@ -17,8 +21,8 @@ To start using snp-sites, load one of these modules using a `module load` comman module load snp-sites/2.5.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|snp-sites/2.5.1-GCCcore-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|snp-sites/2.5.1-GCCcore-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/snpEff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/snpEff.md index 2d6adbb218fd..ff0335e98204 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/snpEff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/snpEff.md @@ -6,6 +6,10 @@ hide: snpEff ====== + +SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes). + +https://pcingola.github.io/SnpEff/ # Available modules @@ -17,8 +21,8 @@ To start using snpEff, load one of these modules using a `module load` command l module load snpEff/5.0e-GCCcore-10.2.0-Java-13 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|snpEff/5.0e-GCCcore-10.2.0-Java-13|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|snpEff/5.0e-GCCcore-10.2.0-Java-13|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/solo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/solo.md new file mode 100644 index 000000000000..cd9a39f9b915 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/solo.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +solo +==== + + +Doublet detection via semi-supervised deep learning + +https://github.com/calico/solo +# Available modules + + +The overview below shows which solo installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using solo, load one of these modules using a `module load` command like: + +```shell +module load solo/1.3-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|solo/1.3-foss-2022a|x|x|x|x|x|x| + + +### solo/1.3-foss-2022a + +This is a list of extensions included in the module: + +commonmark-0.9.1, ConfigArgParse-1.5.3, docrep-0.3.2, opt-einsum-3.3.0, pyDeprecate-0.3.2, pyro-api-0.1.2, pyro-ppl-1.8.4, pytorch-lightning-1.3.8, PyYAML-5.4.1, rich-12.6.0, scvi-tools-0.14.6, solo-sc-1.3, torchmetrics-0.7.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sonic.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sonic.md index 0c195fef0841..7121c443f939 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sonic.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sonic.md @@ -6,6 +6,10 @@ hide: sonic ===== + +Sonic is a simple algorithm for speeding up or slowing down speech. However,it's optimized for speed ups of over 2X, unlike previous algorithms for changingspeech rate. The Sonic library is a very simple ANSI C library that is designedto easily be integrated into streaming voice applications, like TTS back ends. + +https://github.com/espeak-ng/sonic # Available modules @@ -17,8 +21,8 @@ To start using sonic, load one of these modules using a `module load` command li module load sonic/20180202-gompi-2020a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|sonic/20180202-gompi-2020a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|sonic/20180202-gompi-2020a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spaCy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spaCy.md index ad88cc464621..9fd2c2332389 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/spaCy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/spaCy.md @@ -6,6 +6,10 @@ hide: spaCy ===== + +Industrial-strength Natural Language Processing (NLP) in Python. + +https://spacy.io/ # Available modules @@ -17,8 +21,15 @@ To start using spaCy, load one of these modules using a `module load` command li module load spaCy/3.4.4-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|spaCy/3.4.4-foss-2022a|x|x|x|x|x|x| + + +### spaCy/3.4.4-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|spaCy/3.4.4-foss-2022a|x|x|x|x|x|x|x|x| +blis-0.7.9, catalogue-2.0.8, confection-0.0.3, cymem-2.0.7, langcodes-3.3.0, ml_datasets-0.2.0, murmurhash-1.0.9, pathy-0.10.1, preshed-3.0.8, pydantic-1.10.2, smart-open-6.3.0, spaCy-3.4.4, spacy-legacy-3.0.10, spacy-loggers-1.0.4, srsly-2.4.5, thinc-8.1.6, tqdm-4.64.1, typer-0.7.0, wasabi-0.10.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spaln.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spaln.md index 18a501b2a5e9..4bafb1e11329 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/spaln.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/spaln.md @@ -6,6 +6,10 @@ hide: spaln ===== + +Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. + +https://github.com/ogotoh/spaln # Available modules @@ -17,11 +21,11 @@ To start using spaln, load one of these modules using a `module load` command li module load spaln/2.4.13f-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|spaln/2.4.13f-GCC-11.3.0|x|x|x|x|x|x|x|x| -|spaln/2.4.12-GCC-11.2.0|x|x|x|x|x|x|x|x| -|spaln/2.4.12-GCC-10.2.0|x|x|x|x|x|x|x|x| -|spaln/2.4.03-iccifort-2019.5.281|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|spaln/2.4.13f-GCC-11.3.0|x|x|x|x|x|x| +|spaln/2.4.12-GCC-11.2.0|x|x|x|x|x|x| +|spaln/2.4.12-GCC-10.2.0|x|x|x|x|x|x| +|spaln/2.4.03-iccifort-2019.5.281|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sparse-neighbors-search.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sparse-neighbors-search.md index beb4aa5e6a26..d2693ec4336b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sparse-neighbors-search.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sparse-neighbors-search.md @@ -6,6 +6,10 @@ hide: sparse-neighbors-search ======================= + +A Python/C++ implementation of an approximate nearest neighbor search for sparse data structures based on the idea of local sensitiv hash functions. + +https://github.com/joachimwolff/sparse-neighbors-search # Available modules @@ -17,8 +21,15 @@ To start using sparse-neighbors-search, load one of these modules using a `modul module load sparse-neighbors-search/0.7-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|sparse-neighbors-search/0.7-foss-2022a|x|x|x|x|x|x| + + +### sparse-neighbors-search/0.7-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|sparse-neighbors-search/0.7-foss-2022a|x|x|x|x|x|x|x|x| +sparse-neighbors-search-0.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sparsehash.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sparsehash.md index 2226666d4d75..2acffdf6cd28 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sparsehash.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sparsehash.md @@ -6,6 +6,10 @@ hide: sparsehash ========== + +An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed. + +https://github.com/sparsehash/sparsehash # Available modules @@ -14,11 +18,12 @@ The overview below shows which sparsehash installations are available per HPC-UG To start using sparsehash, load one of these modules using a `module load` command like: ```shell -module load sparsehash/2.0.3-GCCcore-8.3.0 +module load sparsehash/2.0.4-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|sparsehash/2.0.3-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|sparsehash/2.0.4-GCCcore-12.3.0|x|x|x|x|x|x| +|sparsehash/2.0.3-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spatialreg.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spatialreg.md index e70fa29ed197..05096df50c0e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/spatialreg.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/spatialreg.md @@ -6,6 +6,10 @@ hide: spatialreg ========== + +A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep', 'sphet' and 'spse'. + +https://cran.r-project.org/package=spatialreg # Available modules @@ -17,9 +21,22 @@ To start using spatialreg, load one of these modules using a `module load` comma module load spatialreg/1.1-8-foss-2021a-R-4.1.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|spatialreg/1.1-8-foss-2021a-R-4.1.0|-|x|x|-|x|x| +|spatialreg/1.1-5-foss-2019b-R-3.6.2|-|x|x|-|x|x| + + +### spatialreg/1.1-8-foss-2021a-R-4.1.0 + +This is a list of extensions included in the module: + +s2-1.0.6, sf-1.0-2, spatialreg-1.1-8, spdep-1.1-8, wk-0.5.0 + +### spatialreg/1.1-5-foss-2019b-R-3.6.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|spatialreg/1.1-8-foss-2021a-R-4.1.0|-|x|x|-|x|x|x|x| -|spatialreg/1.1-5-foss-2019b-R-3.6.2|-|x|x|-|x|x|-|x| +sf-0.8-0, spatialreg-1.1-5, spdep-1.1-3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/speech_tools.md b/mkdocs/docs/HPC/only/gent/available_software/detail/speech_tools.md index ab1cfb044a0e..ac1f8451082e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/speech_tools.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/speech_tools.md @@ -6,6 +6,10 @@ hide: speech_tools ============ + +The Edinburgh Speech Tools Library is a collection of C++ class,functions and related programs for manipulating the sorts of objectsused in speech processing. It includes support for reading and writingwaveforms, parameter files (LPC, Ceptra, F0) in various formatsand converting between them.It also includes support for linguistic type objects and supportfor various label files and ngrams (with smoothing). + +['http://festvox.org/festival/'] # Available modules @@ -17,8 +21,8 @@ To start using speech_tools, load one of these modules using a `module load` com module load speech_tools/2.5.0-GCCcore-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|speech_tools/2.5.0-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|speech_tools/2.5.0-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spglib-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spglib-python.md index ec63e2741e31..ffca8cb897df 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/spglib-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/spglib-python.md @@ -6,6 +6,10 @@ hide: spglib-python ============= + +Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C. + +https://pypi.python.org/pypi/spglib # Available modules @@ -17,15 +21,15 @@ To start using spglib-python, load one of these modules using a `module load` co module load spglib-python/2.0.0-intel-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|spglib-python/2.0.0-intel-2022a|x|x|x|x|x|x|x|x| -|spglib-python/2.0.0-foss-2022a|x|x|x|x|x|x|x|x| -|spglib-python/1.16.3-intel-2021b|x|x|x|-|x|x|x|x| -|spglib-python/1.16.3-foss-2021b|x|x|x|-|x|x|x|x| -|spglib-python/1.16.1-gomkl-2021a|x|x|x|x|x|x|x|x| -|spglib-python/1.16.0-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|spglib-python/1.16.0-fosscuda-2020b|-|-|-|-|x|-|-|-| -|spglib-python/1.16.0-foss-2020b|-|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|spglib-python/2.0.0-intel-2022a|x|x|x|x|x|x| +|spglib-python/2.0.0-foss-2022a|x|x|x|x|x|x| +|spglib-python/1.16.3-intel-2021b|x|x|x|-|x|x| +|spglib-python/1.16.3-foss-2021b|x|x|x|-|x|x| +|spglib-python/1.16.1-gomkl-2021a|x|x|x|x|x|x| +|spglib-python/1.16.0-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|spglib-python/1.16.0-fosscuda-2020b|-|-|-|-|x|-| +|spglib-python/1.16.0-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md b/mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md index 0e696e1c57c7..3d8ade084715 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/spoa.md @@ -6,6 +6,10 @@ hide: spoa ==== + +Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm which is used to generate consensus sequences + +https://github.com/rvaser/spoa # Available modules @@ -17,13 +21,13 @@ To start using spoa, load one of these modules using a `module load` command lik module load spoa/4.0.7-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|spoa/4.0.7-GCC-11.3.0|x|x|x|x|x|x|x|x| -|spoa/4.0.7-GCC-11.2.0|x|x|x|-|x|x|x|x| -|spoa/4.0.7-GCC-10.3.0|x|x|x|-|x|x|x|x| -|spoa/4.0.7-GCC-10.2.0|-|x|x|x|x|x|x|x| -|spoa/4.0.0-GCC-8.3.0|-|x|x|-|x|x|x|x| -|spoa/3.4.0-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|spoa/4.0.7-GCC-11.3.0|x|x|x|x|x|x| +|spoa/4.0.7-GCC-11.2.0|x|x|x|-|x|x| +|spoa/4.0.7-GCC-10.3.0|x|x|x|-|x|x| +|spoa/4.0.7-GCC-10.2.0|-|x|x|x|x|x| +|spoa/4.0.0-GCC-8.3.0|-|x|x|-|x|x| +|spoa/3.4.0-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/stardist.md b/mkdocs/docs/HPC/only/gent/available_software/detail/stardist.md index dfd1e6e09860..65b4e67ea89c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/stardist.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/stardist.md @@ -6,6 +6,10 @@ hide: stardist ======== + +Object Detection with Star-convex Shapes. + +https://github.com/stardist/stardist # Available modules @@ -17,9 +21,22 @@ To start using stardist, load one of these modules using a `module load` command module load stardist/0.8.3-foss-2021b-CUDA-11.4.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|stardist/0.8.3-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-| +|stardist/0.8.3-foss-2021b|x|x|x|x|x|x| + + +### stardist/0.8.3-foss-2021b-CUDA-11.4.1 + +This is a list of extensions included in the module: + +configparser-5.3.0, csbdeep-0.7.2, edt-2.3.0, funcsigs-1.0.2, gputools-0.2.14, reikna-0.7.6, scikit-tensor-py3-20210331, stardist-0.8.3, tifffile-2022.10.10 + +### stardist/0.8.3-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|stardist/0.8.3-foss-2021b-CUDA-11.4.1|x|-|-|-|x|-|-|-| -|stardist/0.8.3-foss-2021b|x|x|x|x|x|x|x|x| +csbdeep-0.7.2, edt-2.3.0, stardist-0.8.3, tifffile-2022.10.10 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/stars.md b/mkdocs/docs/HPC/only/gent/available_software/detail/stars.md index 5be4ce08a1cb..c74ff13ba9a0 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/stars.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/stars.md @@ -6,6 +6,10 @@ hide: stars ===== + +Reading, manipulating, writing and plotting spatiotemporal arrays (raster and vector data cubes) in R, using GDAL bindings provided by sf, and NetCDF bindings by ncmeta and RNetCDF. + +https://cran.r-project.org/package=stars # Available modules @@ -17,8 +21,15 @@ To start using stars, load one of these modules using a `module load` command li module load stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2|-|x|x|-|x|x| + + +### stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2|-|x|x|-|x|x|x|x| +lwgeom-0.2-5, ncmeta-0.3.0, RNetCDF-2.3-1, stars-0.4-3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/statsmodels.md b/mkdocs/docs/HPC/only/gent/available_software/detail/statsmodels.md index 3f923440355b..80ea2ca5664d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/statsmodels.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/statsmodels.md @@ -6,6 +6,10 @@ hide: statsmodels =========== + +Statsmodels is a Python module that allows users to explore data, estimate statistical models,and perform statistical tests. + +https://www.statsmodels.org/ # Available modules @@ -14,22 +18,102 @@ The overview below shows which statsmodels installations are available per HPC-U To start using statsmodels, load one of these modules using a `module load` command like: ```shell -module load statsmodels/0.14.0-gfbf-2022b +module load statsmodels/0.14.1-gfbf-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|statsmodels/0.14.0-gfbf-2022b|x|x|x|x|x|x|x|x| -|statsmodels/0.13.1-intel-2021b|x|x|x|-|x|x|x|x| -|statsmodels/0.13.1-foss-2022a|x|x|x|x|x|x|x|x| -|statsmodels/0.13.1-foss-2021b|x|x|x|x|x|x|x|x| -|statsmodels/0.12.2-foss-2021a|x|x|x|x|x|x|x|x| -|statsmodels/0.12.1-intel-2020b|-|x|x|-|x|x|x|x| -|statsmodels/0.12.1-fosscuda-2020b|-|-|-|-|x|-|-|-| -|statsmodels/0.12.1-foss-2020b|-|x|x|x|x|x|x|x| -|statsmodels/0.11.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|statsmodels/0.11.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|statsmodels/0.11.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|statsmodels/0.9.0-intel-2019b-Python-2.7.16|-|x|-|-|-|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|statsmodels/0.14.1-gfbf-2023a|x|x|x|x|x|x| +|statsmodels/0.14.0-gfbf-2022b|x|x|x|x|x|x| +|statsmodels/0.13.1-intel-2021b|x|x|x|-|x|x| +|statsmodels/0.13.1-foss-2022a|x|x|x|x|x|x| +|statsmodels/0.13.1-foss-2021b|x|x|x|x|x|x| +|statsmodels/0.12.2-foss-2021a|x|x|x|x|x|x| +|statsmodels/0.12.1-intel-2020b|-|x|x|-|x|x| +|statsmodels/0.12.1-fosscuda-2020b|-|-|-|-|x|-| +|statsmodels/0.12.1-foss-2020b|-|x|x|x|x|x| +|statsmodels/0.11.1-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|statsmodels/0.11.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|statsmodels/0.11.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| +|statsmodels/0.9.0-intel-2019b-Python-2.7.16|-|x|-|-|-|x| + + +### statsmodels/0.14.1-gfbf-2023a + +This is a list of extensions included in the module: + +patsy-0.5.6, statsmodels-0.14.1 + +### statsmodels/0.14.0-gfbf-2022b + +This is a list of extensions included in the module: + +patsy-0.5.3, statsmodels-0.14.0 + +### statsmodels/0.13.1-intel-2021b + +This is a list of extensions included in the module: + +patsy-0.5.2, statsmodels-0.13.1 + +### statsmodels/0.13.1-foss-2022a + +This is a list of extensions included in the module: + +patsy-0.5.2, statsmodels-0.13.1 + +### statsmodels/0.13.1-foss-2021b + +This is a list of extensions included in the module: + +patsy-0.5.2, statsmodels-0.13.1 + +### statsmodels/0.12.2-foss-2021a + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.12.2 + +### statsmodels/0.12.1-intel-2020b + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.12.1 + +### statsmodels/0.12.1-fosscuda-2020b + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.12.1 + +### statsmodels/0.12.1-foss-2020b + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.12.1 + +### statsmodels/0.11.1-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.11.1 + +### statsmodels/0.11.0-intel-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.11.0 + +### statsmodels/0.11.0-foss-2019b-Python-3.7.4 + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.11.0 + +### statsmodels/0.9.0-intel-2019b-Python-2.7.16 + +This is a list of extensions included in the module: + +patsy-0.5.1, statsmodels-0.9.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/suave.md b/mkdocs/docs/HPC/only/gent/available_software/detail/suave.md index c9c7e676a24e..25e7b9479b14 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/suave.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/suave.md @@ -6,6 +6,10 @@ hide: suave ===== + +suave is an interactive web application to visualize read depthratios between two samples and the structural variants of one of the samples(typically the "case" sample in a case/control setup such as tumor/normalcomparison). + +https://github.com/dellytools/suave # Available modules @@ -17,8 +21,8 @@ To start using suave, load one of these modules using a `module load` command li module load suave/20160529-foss-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|suave/20160529-foss-2020b|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|suave/20160529-foss-2020b|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/supernova.md b/mkdocs/docs/HPC/only/gent/available_software/detail/supernova.md index 37c602cd175b..9f4d68039a91 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/supernova.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/supernova.md @@ -6,6 +6,10 @@ hide: supernova ========= + +Supernova is a software package for de novo assembly from Chromium Linked-Reads that are made from a single whole-genome library from an individual DNA source + +https://support.10xgenomics.com/de-novo-assembly/software/overview/latest/welcome # Available modules @@ -17,8 +21,8 @@ To start using supernova, load one of these modules using a `module load` comman module load supernova/2.0.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|supernova/2.0.1|-|-|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|supernova/2.0.1|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/swissknife.md b/mkdocs/docs/HPC/only/gent/available_software/detail/swissknife.md index 550ffb20433c..b6247b79bf2b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/swissknife.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/swissknife.md @@ -6,6 +6,10 @@ hide: swissknife ========== + +Perl module for reading and writing UniProtKB data in plain text format. + +https://sourceforge.net/projects/swissknife/ # Available modules @@ -17,8 +21,8 @@ To start using swissknife, load one of these modules using a `module load` comma module load swissknife/1.80-GCCcore-8.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|swissknife/1.80-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|swissknife/1.80-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/sympy.md b/mkdocs/docs/HPC/only/gent/available_software/detail/sympy.md index 67fff7cb7593..23a9af7cbeca 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/sympy.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/sympy.md @@ -6,6 +6,10 @@ hide: sympy ===== + +SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries. + +https://sympy.org/ # Available modules @@ -14,19 +18,21 @@ The overview below shows which sympy installations are available per HPC-UGent T To start using sympy, load one of these modules using a `module load` command like: ```shell -module load sympy/1.11.1-intel-2022a +module load sympy/1.12-gfbf-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|sympy/1.11.1-intel-2022a|x|x|x|x|x|x|x|x| -|sympy/1.11.1-foss-2022a|x|x|x|-|x|x|x|x| -|sympy/1.10.1-intel-2022a|x|x|x|x|x|x|x|x| -|sympy/1.10.1-foss-2022a|x|x|x|-|x|x|x|x| -|sympy/1.9-intel-2021b|x|x|x|x|x|x|x|x| -|sympy/1.9-foss-2021b|x|x|x|-|x|x|x|x| -|sympy/1.7.1-foss-2020b|-|x|x|x|x|x|x|x| -|sympy/1.6.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|sympy/1.5.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|sympy/1.12-gfbf-2023a|x|x|x|x|x|x| +|sympy/1.12-gfbf-2022b|x|x|x|x|x|x| +|sympy/1.11.1-intel-2022a|x|x|x|x|x|x| +|sympy/1.11.1-foss-2022a|x|x|x|-|x|x| +|sympy/1.10.1-intel-2022a|x|x|x|x|x|x| +|sympy/1.10.1-foss-2022a|x|x|x|-|x|x| +|sympy/1.9-intel-2021b|x|x|x|x|x|x| +|sympy/1.9-foss-2021b|x|x|x|-|x|x| +|sympy/1.7.1-foss-2020b|-|x|x|x|x|x| +|sympy/1.6.2-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|sympy/1.5.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/synapseclient.md b/mkdocs/docs/HPC/only/gent/available_software/detail/synapseclient.md new file mode 100644 index 000000000000..087b3df27728 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/synapseclient.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +synapseclient +============= + + +The synapseclient package provides an interface to Synapse, a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate, providing support for: integrated presentation of data, code and text fine grained access control provenance tracking The synapseclient package lets you communicate with the cloud-hosted Synapse service to access data and create shared data analysis projects from within Python scripts or at the interactive Python console. Other Synapse clients exist for R, Java, and the web. The Python client can also be used from the command line. + +https://help.synapse.org/docs/ +# Available modules + + +The overview below shows which synapseclient installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using synapseclient, load one of these modules using a `module load` command like: + +```shell +module load synapseclient/3.0.0-GCCcore-12.2.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|synapseclient/3.0.0-GCCcore-12.2.0|x|x|x|x|x|x| + + +### synapseclient/3.0.0-GCCcore-12.2.0 + +This is a list of extensions included in the module: + +cryptography-3.3.2, Deprecated-1.2.14, keyring-23.4.1, keyrings.alt-3.1, synapseclient-3.0.0, wrapt-1.14.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/synthcity.md b/mkdocs/docs/HPC/only/gent/available_software/detail/synthcity.md index 9aa23e9e92d6..6871849015e4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/synthcity.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/synthcity.md @@ -6,6 +6,10 @@ hide: synthcity ========= + +A library for generating and evaluating synthetic tabular data. + +https://github.com/vanderschaarlab/synthcity # Available modules @@ -17,8 +21,15 @@ To start using synthcity, load one of these modules using a `module load` comman module load synthcity/0.2.4-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|synthcity/0.2.4-foss-2022a|x|x|x|x|x|x| + + +### synthcity/0.2.4-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|synthcity/0.2.4-foss-2022a|x|x|x|x|x|x|x|x| +decaf_synthetic_data-0.1.6, feather-format-0.4.1, fflows-0.0.3, fsspec-2022.7.1, functorch-0.2.0, geomloss-0.2.5, inflate64-0.3.1, keopscore-2.1.1, loguru-0.6.0, multivolumefile-0.2.3, nflows-0.14, opacus-1.3.0, opt_einsum-3.3.0, pgmpy-0.1.21, py7zr-0.20.4, pybcj-1.0.1, pycox-0.2.3, pycryptodomex-3.17, pykeops-2.1.1, pyppmd-1.0.0, pyts-0.12.0, pyzstd-0.15.4, synthcity-0.2.4, texttable-1.6.7, thinc-8.1.9, torchtuples-0.2.2, tsai-0.3.5, xgbse-0.2.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tMAE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tMAE.md index 5d3338284fcb..7e81eb01e17e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tMAE.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tMAE.md @@ -6,6 +6,10 @@ hide: tMAE ==== + +Package containing functions to: perform a negative binomial test on allele-specific counts add gnomAD minor allele frequencies MAplot (FC vs total counts) of allele-specific counts and results allelic counts (ALT vs REF) + +https://github.com/mumichae/tMAE # Available modules @@ -17,8 +21,8 @@ To start using tMAE, load one of these modules using a `module load` command lik module load tMAE/1.0.0-foss-2020b-R-4.0.3 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tMAE/1.0.0-foss-2020b-R-4.0.3|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tMAE/1.0.0-foss-2020b-R-4.0.3|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tabixpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tabixpp.md index b8080c5539e8..6e64aa07a358 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tabixpp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tabixpp.md @@ -6,6 +6,10 @@ hide: tabixpp ======= + +C++ wrapper to tabix indexer + +https://github.com/ekg/tabixpp # Available modules @@ -14,11 +18,12 @@ The overview below shows which tabixpp installations are available per HPC-UGent To start using tabixpp, load one of these modules using a `module load` command like: ```shell -module load tabixpp/1.1.0-GCC-10.2.0 +module load tabixpp/1.1.2-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tabixpp/1.1.0-GCC-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tabixpp/1.1.2-GCC-11.3.0|x|x|x|x|x|x| +|tabixpp/1.1.0-GCC-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/task-spooler.md b/mkdocs/docs/HPC/only/gent/available_software/detail/task-spooler.md index ffdf36238aad..46e093a0e9f6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/task-spooler.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/task-spooler.md @@ -6,6 +6,10 @@ hide: task-spooler ============ + +task spooler is a Unix batch system where the tasks spooled run one after the other. + +http://viric.name/soft/ts/ # Available modules @@ -17,8 +21,8 @@ To start using task-spooler, load one of these modules using a `module load` com module load task-spooler/1.0.2-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|task-spooler/1.0.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|task-spooler/1.0.2-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/taxator-tk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/taxator-tk.md index 2cac835ad11a..44897408feba 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/taxator-tk.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/taxator-tk.md @@ -6,6 +6,10 @@ hide: taxator-tk ========== + +A set of programs for the taxonomic analysis of nucleotide sequence data + +https://github.com/fungs/taxator-tk # Available modules @@ -17,9 +21,9 @@ To start using taxator-tk, load one of these modules using a `module load` comma module load taxator-tk/1.3.3-gompi-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|taxator-tk/1.3.3-gompi-2020b|-|x|-|-|-|-|x|-| -|taxator-tk/1.3.3-GCC-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|taxator-tk/1.3.3-gompi-2020b|-|x|-|-|-|-| +|taxator-tk/1.3.3-GCC-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tbb.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tbb.md index 33ce6116c3c2..d4e0a7edb6b5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tbb.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tbb.md @@ -6,6 +6,10 @@ hide: tbb === + +Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability. + +https://github.com/oneapi-src/oneTBB # Available modules @@ -17,13 +21,13 @@ To start using tbb, load one of these modules using a `module load` command like module load tbb/2021.5.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tbb/2021.5.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|tbb/2020.3-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|tbb/2020.3-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|tbb/2020.3-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|tbb/2020.1-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|tbb/2019_U9-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tbb/2021.5.0-GCCcore-11.3.0|x|x|x|x|x|x| +|tbb/2020.3-GCCcore-11.2.0|x|x|x|x|x|x| +|tbb/2020.3-GCCcore-10.3.0|-|x|x|-|x|x| +|tbb/2020.3-GCCcore-10.2.0|-|x|x|x|x|x| +|tbb/2020.1-GCCcore-9.3.0|-|x|x|-|x|x| +|tbb/2019_U9-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tbl2asn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tbl2asn.md index 31a18376507c..215d55d49179 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tbl2asn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tbl2asn.md @@ -6,6 +6,10 @@ hide: tbl2asn ======= + +Tbl2asn is a command-line program that automates the creation of sequence records for submission to GenBank + +https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/ # Available modules @@ -17,9 +21,9 @@ To start using tbl2asn, load one of these modules using a `module load` command module load tbl2asn/20220427-linux64 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tbl2asn/20220427-linux64|-|x|x|x|x|x|x|x| -|tbl2asn/25.8-linux64|-|-|-|-|-|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tbl2asn/20220427-linux64|-|x|x|x|x|x| +|tbl2asn/25.8-linux64|-|-|-|-|-|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tcsh.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tcsh.md index 0b280a99adf9..5e7d2c8cb6dc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tcsh.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tcsh.md @@ -6,6 +6,10 @@ hide: tcsh ==== + +Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax. + +https://www.tcsh.org # Available modules @@ -14,13 +18,14 @@ The overview below shows which tcsh installations are available per HPC-UGent Ti To start using tcsh, load one of these modules using a `module load` command like: ```shell -module load tcsh/6.22.04-GCCcore-10.3.0 +module load tcsh/6.24.10-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tcsh/6.22.04-GCCcore-10.3.0|x|-|-|-|x|-|-|-| -|tcsh/6.22.03-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|tcsh/6.22.02-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tcsh/6.24.10-GCCcore-12.3.0|x|x|x|x|x|x| +|tcsh/6.22.04-GCCcore-10.3.0|x|-|-|-|x|-| +|tcsh/6.22.03-GCCcore-10.2.0|-|x|x|x|x|x| +|tcsh/6.22.02-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboard.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboard.md index 66eca323d95f..5cf9905eb0a1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboard.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboard.md @@ -6,6 +6,10 @@ hide: tensorboard =========== + +TensorBoard is a suite of web applications for inspecting and understanding your TensorFlow runsand graphs. + +https://github.com/tensorflow/tensorboard # Available modules @@ -17,9 +21,22 @@ To start using tensorboard, load one of these modules using a `module load` comm module load tensorboard/2.10.0-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tensorboard/2.10.0-foss-2022a|x|x|x|x|x|x| +|tensorboard/2.8.0-foss-2021a|x|x|x|x|x|x| + + +### tensorboard/2.10.0-foss-2022a + +This is a list of extensions included in the module: + +absl-py-1.2.0, cachetools-5.2.0, google-auth-2.11.1, google-auth-oauthlib-0.4.6, grpcio-1.49.1, Markdown-3.4.1, oauthlib-3.2.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.1, rsa-4.9, tensorboard-2.10.0, tensorboard_data_server-0.6.1, tensorboard_plugin_wit-1.8.1, Werkzeug-2.2.2 + +### tensorboard/2.8.0-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tensorboard/2.10.0-foss-2022a|x|x|x|x|x|x|x|x| -|tensorboard/2.8.0-foss-2021a|x|x|x|x|x|x|x|x| +absl-py-1.0.0, cachetools-5.0.0, google-auth-2.5.0, google-auth-2.5.0, google-auth-oauthlib-0.4.6, grpcio-1.43.0, importlib_metadata-4.10.1, Markdown-3.3.6, oauthlib-3.1.1, pyasn1-modules-0.2.8, requests-oauthlib-1.3.0, rsa-4.8, tensorboard-2.8.0, tensorboard_data_server-0.6.1, tensorboard_plugin_wit-1.8.1, Werkzeug-2.0.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboardX.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboardX.md index bee9ac069104..4f9b6bc91891 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboardX.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorboardX.md @@ -6,6 +6,10 @@ hide: tensorboardX ============ + +Tensorboard for PyTorch. + +https://github.com/lanpa/tensorboardX # Available modules @@ -14,14 +18,35 @@ The overview below shows which tensorboardX installations are available per HPC- To start using tensorboardX, load one of these modules using a `module load` command like: ```shell -module load tensorboardX/2.5.1-foss-2022a +module load tensorboardX/2.6.2.2-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tensorboardX/2.6.2.2-foss-2023a|x|x|x|x|x|x| +|tensorboardX/2.6.2.2-foss-2022b|x|x|x|x|x|x| +|tensorboardX/2.5.1-foss-2022a|x|x|x|x|x|x| +|tensorboardX/2.2-fosscuda-2020b-PyTorch-1.7.1|-|-|-|-|x|-| +|tensorboardX/2.2-foss-2020b-PyTorch-1.7.1|-|x|x|x|x|x| +|tensorboardX/2.1-fosscuda-2020b-PyTorch-1.7.1|-|-|-|-|x|-| + + +### tensorboardX/2.6.2.2-foss-2023a + +This is a list of extensions included in the module: + +tensorboardX-2.6.2.2 + +### tensorboardX/2.6.2.2-foss-2022b + +This is a list of extensions included in the module: + +tensorboardX-2.6.2.2 + +### tensorboardX/2.5.1-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tensorboardX/2.5.1-foss-2022a|x|x|x|x|x|x|x|x| -|tensorboardX/2.2-fosscuda-2020b-PyTorch-1.7.1|-|-|-|-|x|-|-|-| -|tensorboardX/2.2-foss-2020b-PyTorch-1.7.1|-|x|x|x|x|x|x|x| -|tensorboardX/2.1-fosscuda-2020b-PyTorch-1.7.1|-|-|-|-|x|-|-|-| +tensorboardX-2.5.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tensorflow-probability.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorflow-probability.md new file mode 100644 index 000000000000..f537a36d9dca --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tensorflow-probability.md @@ -0,0 +1,42 @@ +--- +hide: + - toc +--- + +tensorflow-probability +====================== + + +TensorFlow Probability (TFP) is a library for probabilistic reasoning and statistical analysis. + +https://www.tensorflow.org/probability +# Available modules + + +The overview below shows which tensorflow-probability installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using tensorflow-probability, load one of these modules using a `module load` command like: + +```shell +module load tensorflow-probability/0.19.0-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tensorflow-probability/0.19.0-foss-2022a|x|x|x|x|x|x| +|tensorflow-probability/0.14.0-foss-2021a|x|x|x|x|x|x| + + +### tensorflow-probability/0.19.0-foss-2022a + +This is a list of extensions included in the module: + +cloudpickle-2.2.0, tensorflow-probability-0.19.0 + +### tensorflow-probability/0.14.0-foss-2021a + +This is a list of extensions included in the module: + +cloudpickle-2.2.1, tensorflow-probability-0.14.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/texinfo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/texinfo.md index 5ae3ce8a8db6..48653934218a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/texinfo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/texinfo.md @@ -6,6 +6,10 @@ hide: texinfo ======= + +Texinfo is the official documentation format of the GNU project. + +https://www.gnu.org/software/texinfo/ # Available modules @@ -17,9 +21,9 @@ To start using texinfo, load one of these modules using a `module load` command module load texinfo/6.7-GCCcore-9.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|texinfo/6.7-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|texinfo/6.7-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|texinfo/6.7-GCCcore-9.3.0|-|x|x|-|x|x| +|texinfo/6.7-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/texlive.md b/mkdocs/docs/HPC/only/gent/available_software/detail/texlive.md index f3111a0449f7..3c43b7e99171 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/texlive.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/texlive.md @@ -6,6 +6,10 @@ hide: texlive ======= + +TeX is a typesetting language. Instead of visually formatting your text, you enter your manuscript text intertwined with TeX commands in a plain text file. You then run TeX to produce formatted output, such as a PDF file. Thus, in contrast to standard word processors, your document is a separate file that does not pretend to be a representation of the final typeset output, and so can be easily edited and manipulated. + +https://tug.org # Available modules @@ -14,11 +18,12 @@ The overview below shows which texlive installations are available per HPC-UGent To start using texlive, load one of these modules using a `module load` command like: ```shell -module load texlive/20210324-GCC-11.2.0 +module load texlive/20230313-GCC-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|texlive/20210324-GCC-11.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|texlive/20230313-GCC-12.3.0|x|x|x|x|x|x| +|texlive/20210324-GCC-11.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tidymodels.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tidymodels.md index 6e21c10c4f3b..a296f0f84f4b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tidymodels.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tidymodels.md @@ -6,6 +6,10 @@ hide: tidymodels ========== + +tidymodels is a 'meta-package' for modeling and statistical analysis that shares the underlying design philosophy, grammar, and data structures of the tidyverse. + +https://tidymodels.tidymodels.org # Available modules @@ -17,8 +21,15 @@ To start using tidymodels, load one of these modules using a `module load` comma module load tidymodels/1.1.0-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tidymodels/1.1.0-foss-2022b|x|x|x|x|x|x| + + +### tidymodels/1.1.0-foss-2022b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tidymodels/1.1.0-foss-2022b|x|x|x|x|x|x|x|x| +cli-3.6.1, conflicted-1.2.0, dials-1.2.0, DiceDesign-1.9, dplyr-1.1.2, ggplot2-3.4.2, GPfit-1.0-8, hardhat-1.3.0, infer-1.0.4, modeldata-1.1.0, modelenv-0.1.1, parsnip-1.1.0, pillar-1.9.0, recipes-1.0.6, rsample-1.1.1, slider-0.3.0, tibble-3.2.1, tidymodels-1.1.0, tune-1.1.1, vctrs-0.6.3, warp-0.2.0, workflows-1.1.3, workflowsets-1.0.1, yardstick-1.2.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/time.md b/mkdocs/docs/HPC/only/gent/available_software/detail/time.md index ae7e2a2cd19e..f12c47efd1d4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/time.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/time.md @@ -6,6 +6,10 @@ hide: time ==== + +The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running. + +https://www.gnu.org/software/time/ # Available modules @@ -17,9 +21,9 @@ To start using time, load one of these modules using a `module load` command lik module load time/1.9-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|time/1.9-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|time/1.9-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|time/1.9-GCCcore-10.2.0|-|x|x|x|x|x| +|time/1.9-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/timm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/timm.md index 11bf78d5ddc1..2a97e9e5519d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/timm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/timm.md @@ -6,6 +6,10 @@ hide: timm ==== + +timm is a library containing SOTA computer vision models, layers, utilities,optimizers, schedulers, data-loaders, augmentations, and training/evaluationscripts. It comes packaged with >700 pretrained models, and is designed to beflexible and easy to use. + +https://huggingface.co/docs/timm # Available modules @@ -17,9 +21,22 @@ To start using timm, load one of these modules using a `module load` command lik module load timm/0.9.2-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|timm/0.9.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|timm/0.6.13-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| + + +### timm/0.9.2-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +huggingface_hub-0.15.1, safetensors-0.3.1, timm-0.9.2 + +### timm/0.6.13-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|timm/0.9.2-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|timm/0.6.13-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| +huggingface_hub-0.13.4, safetensors-0.3.0, timm-0.6.13 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tmux.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tmux.md index 1165e613fe1a..f582bf06290d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tmux.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tmux.md @@ -6,6 +6,10 @@ hide: tmux ==== + +tmux is a terminal multiplexer: it enables a number ofterminals to be created, accessed, and controlled from a single screen. tmuxmay be detached from a screen and continue running in the background, thenlater reattached. + +https://github.com/tmux/tmux/ # Available modules @@ -17,8 +21,8 @@ To start using tmux, load one of these modules using a `module load` command lik module load tmux/3.2a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tmux/3.2a|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tmux/3.2a|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tokenizers.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tokenizers.md index e3ab6e76b16d..fd909fba53e8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tokenizers.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tokenizers.md @@ -6,6 +6,10 @@ hide: tokenizers ========== + +Fast State-of-the-Art Tokenizers optimized for Research and Production + +https://github.com/huggingface/tokenizers # Available modules @@ -17,9 +21,9 @@ To start using tokenizers, load one of these modules using a `module load` comma module load tokenizers/0.13.3-GCCcore-12.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tokenizers/0.13.3-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|tokenizers/0.12.1-GCCcore-10.3.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tokenizers/0.13.3-GCCcore-12.2.0|x|x|x|x|x|x| +|tokenizers/0.12.1-GCCcore-10.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/torchaudio.md b/mkdocs/docs/HPC/only/gent/available_software/detail/torchaudio.md index 173d7a227a42..a9bd8de095c8 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/torchaudio.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/torchaudio.md @@ -6,6 +6,10 @@ hide: torchaudio ========== + +Data manipulation and transformation for audio signalprocessing, powered by PyTorch + +https://github.com/pytorch/audio # Available modules @@ -17,8 +21,9 @@ To start using torchaudio, load one of these modules using a `module load` comma module load torchaudio/0.12.0-foss-2022a-PyTorch-1.12.0-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|torchaudio/0.12.0-foss-2022a-PyTorch-1.12.0-CUDA-11.7.0|x|-|-|-|x|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|torchaudio/0.12.0-foss-2022a-PyTorch-1.12.0-CUDA-11.7.0|x|-|x|-|x|-| +|torchaudio/0.12.0-foss-2022a-PyTorch-1.12.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/torchtext.md b/mkdocs/docs/HPC/only/gent/available_software/detail/torchtext.md index f50dbea7d69c..7bc3cf1e1d87 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/torchtext.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/torchtext.md @@ -6,6 +6,10 @@ hide: torchtext ========= + +Data loaders and abstractions for text and NLP + +https://github.com/pytorch/text # Available modules @@ -17,8 +21,8 @@ To start using torchtext, load one of these modules using a `module load` comman module load torchtext/0.14.1-foss-2022a-PyTorch-1.12.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|torchtext/0.14.1-foss-2022a-PyTorch-1.12.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|torchtext/0.14.1-foss-2022a-PyTorch-1.12.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/torchvf.md b/mkdocs/docs/HPC/only/gent/available_software/detail/torchvf.md index 244ede619abf..8f93793db838 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/torchvf.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/torchvf.md @@ -6,6 +6,10 @@ hide: torchvf ======= + +TorchVF is a unifying Python library for using vector fields for efficient proposal-free instance segmentation. + +https://github.com/ryanirl/torchvf # Available modules @@ -17,9 +21,22 @@ To start using torchvf, load one of these modules using a `module load` command module load torchvf/0.1.3-foss-2022a-CUDA-11.7.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|torchvf/0.1.3-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-| +|torchvf/0.1.3-foss-2022a|x|x|x|x|x|x| + + +### torchvf/0.1.3-foss-2022a-CUDA-11.7.0 + +This is a list of extensions included in the module: + +edt-2.3.1, torchvf-0.1.3 + +### torchvf/0.1.3-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|torchvf/0.1.3-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|torchvf/0.1.3-foss-2022a|x|x|x|x|x|x|x|x| +edt-2.3.1, torchvf-0.1.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/torchvision.md b/mkdocs/docs/HPC/only/gent/available_software/detail/torchvision.md index ab5891754082..1520ade3695c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/torchvision.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/torchvision.md @@ -6,6 +6,10 @@ hide: torchvision =========== + +Datasets, Transforms and Models specific to Computer Vision + +https://github.com/pytorch/vision # Available modules @@ -14,18 +18,19 @@ The overview below shows which torchvision installations are available per HPC-U To start using torchvision, load one of these modules using a `module load` command like: ```shell -module load torchvision/0.13.1-foss-2022a-CUDA-11.7.0 +module load torchvision/0.14.1-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|torchvision/0.13.1-foss-2022a-CUDA-11.7.0|x|-|-|-|x|-|-|-| -|torchvision/0.13.1-foss-2022a|x|x|x|x|x|x|x|x| -|torchvision/0.11.3-foss-2021a|-|x|x|-|x|x|x|x| -|torchvision/0.11.1-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-|-|-| -|torchvision/0.11.1-foss-2021a|-|x|x|-|x|x|x|x| -|torchvision/0.8.2-fosscuda-2020b-PyTorch-1.7.1|x|-|-|-|x|-|-|-| -|torchvision/0.8.2-foss-2020b-PyTorch-1.7.1|-|x|x|x|x|x|x|x| -|torchvision/0.7.0-foss-2019b-Python-3.7.4-PyTorch-1.6.0|-|-|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|torchvision/0.14.1-foss-2022b|x|x|x|x|x|x| +|torchvision/0.13.1-foss-2022a-CUDA-11.7.0|x|-|x|-|x|-| +|torchvision/0.13.1-foss-2022a|x|x|x|x|x|x| +|torchvision/0.11.3-foss-2021a|-|x|x|-|x|x| +|torchvision/0.11.1-foss-2021a-CUDA-11.3.1|x|-|-|-|x|-| +|torchvision/0.11.1-foss-2021a|-|x|x|-|x|x| +|torchvision/0.8.2-fosscuda-2020b-PyTorch-1.7.1|x|-|-|-|x|-| +|torchvision/0.8.2-foss-2020b-PyTorch-1.7.1|-|x|x|x|x|x| +|torchvision/0.7.0-foss-2019b-Python-3.7.4-PyTorch-1.6.0|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tornado.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tornado.md new file mode 100644 index 000000000000..50f0e3863eec --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tornado.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +tornado +======= + + +Tornado is a Python web framework and asynchronous networking library. + +https://github.com/tornadoweb/tornado +# Available modules + + +The overview below shows which tornado installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using tornado, load one of these modules using a `module load` command like: + +```shell +module load tornado/6.3.2-GCCcore-12.3.0 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tornado/6.3.2-GCCcore-12.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tqdm.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tqdm.md index 35086600ace6..01bdddd8bd17 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tqdm.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tqdm.md @@ -6,6 +6,10 @@ hide: tqdm ==== + +A fast, extensible progress bar for Python and CLI + +https://github.com/tqdm/tqdm # Available modules @@ -14,18 +18,19 @@ The overview below shows which tqdm installations are available per HPC-UGent Ti To start using tqdm, load one of these modules using a `module load` command like: ```shell -module load tqdm/4.64.1-GCCcore-12.2.0 +module load tqdm/4.66.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tqdm/4.64.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|tqdm/4.64.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|tqdm/4.62.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|tqdm/4.61.2-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|tqdm/4.60.0-GCCcore-10.2.0|-|x|x|-|x|x|x|x| -|tqdm/4.56.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|tqdm/4.47.0-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|tqdm/4.41.1-GCCcore-8.3.0|-|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tqdm/4.66.1-GCCcore-12.3.0|x|x|x|x|x|x| +|tqdm/4.64.1-GCCcore-12.2.0|x|x|x|x|x|x| +|tqdm/4.64.0-GCCcore-11.3.0|x|x|x|x|x|x| +|tqdm/4.62.3-GCCcore-11.2.0|x|x|x|x|x|x| +|tqdm/4.61.2-GCCcore-10.3.0|x|x|x|x|x|x| +|tqdm/4.60.0-GCCcore-10.2.0|-|x|x|-|x|x| +|tqdm/4.56.2-GCCcore-10.2.0|x|x|x|x|x|x| +|tqdm/4.47.0-GCCcore-9.3.0|x|x|x|x|x|x| +|tqdm/4.41.1-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/treatSens.md b/mkdocs/docs/HPC/only/gent/available_software/detail/treatSens.md index 18276e0dffd2..08b6c9df2e84 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/treatSens.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/treatSens.md @@ -6,6 +6,10 @@ hide: treatSens ========= + +Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment. + +https://github.com/vdorie/treatSens # Available modules @@ -17,8 +21,8 @@ To start using treatSens, load one of these modules using a `module load` comman module load treatSens/3.0-20201002-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|treatSens/3.0-20201002-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|treatSens/3.0-20201002-foss-2020a-R-4.0.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/trimAl.md b/mkdocs/docs/HPC/only/gent/available_software/detail/trimAl.md index c7a9de1612dc..e0987544bfc7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/trimAl.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/trimAl.md @@ -6,6 +6,10 @@ hide: trimAl ====== + +EVB, FEP and LIE simulator. + +https://github.com/scapella/trimal # Available modules @@ -14,11 +18,12 @@ The overview below shows which trimAl installations are available per HPC-UGent To start using trimAl, load one of these modules using a `module load` command like: ```shell -module load trimAl/1.4.1-GCCcore-11.3.0 +module load trimAl/1.4.1-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|trimAl/1.4.1-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|trimAl/1.4.1-GCCcore-12.3.0|x|x|x|x|x|x| +|trimAl/1.4.1-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/tsne.md b/mkdocs/docs/HPC/only/gent/available_software/detail/tsne.md index 9a86283e7f1f..e71dbfd0e55d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/tsne.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/tsne.md @@ -6,6 +6,10 @@ hide: tsne ==== + +Python library containing T-SNE algorithms. + +https://github.com/danielfrg/tsne # Available modules @@ -17,8 +21,8 @@ To start using tsne, load one of these modules using a `module load` command lik module load tsne/0.1.8-intel-2019b-Python-2.7.16 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|tsne/0.1.8-intel-2019b-Python-2.7.16|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|tsne/0.1.8-intel-2019b-Python-2.7.16|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/typing-extensions.md b/mkdocs/docs/HPC/only/gent/available_software/detail/typing-extensions.md index e9cae6e73b4c..3f462bd2e811 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/typing-extensions.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/typing-extensions.md @@ -6,6 +6,10 @@ hide: typing-extensions ================= + +Typing Extensions – Backported and Experimental Type Hints for Python + +https://github.com/python/typing/blob/master/typing_extensions/README.rst # Available modules @@ -14,14 +18,17 @@ The overview below shows which typing-extensions installations are available per To start using typing-extensions, load one of these modules using a `module load` command like: ```shell -module load typing-extensions/4.3.0-GCCcore-11.3.0 +module load typing-extensions/4.9.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|typing-extensions/4.3.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|typing-extensions/3.10.0.2-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|typing-extensions/3.10.0.0-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|typing-extensions/3.7.4.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|typing-extensions/4.9.0-GCCcore-12.3.0|x|x|x|x|x|x| +|typing-extensions/4.9.0-GCCcore-12.2.0|x|x|x|x|x|x| +|typing-extensions/4.8.0-GCCcore-12.3.0|x|x|x|x|x|x| +|typing-extensions/4.3.0-GCCcore-11.3.0|x|x|x|x|x|x| +|typing-extensions/3.10.0.2-GCCcore-11.2.0|x|x|x|x|x|x| +|typing-extensions/3.10.0.0-GCCcore-10.3.0|x|x|x|x|x|x| +|typing-extensions/3.7.4.3-GCCcore-10.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/umap-learn.md b/mkdocs/docs/HPC/only/gent/available_software/detail/umap-learn.md index 7e6d605604a4..4332ed19ff7f 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/umap-learn.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/umap-learn.md @@ -6,6 +6,10 @@ hide: umap-learn ========== + +Uniform Manifold Approximation and Projection (UMAP) is a dimension reduction technique that can be used for visualisation similarly to t-SNE, but also for general non-linear dimension reduction. + +https://pypi.org/project/umap-learn/ # Available modules @@ -14,13 +18,33 @@ The overview below shows which umap-learn installations are available per HPC-UG To start using umap-learn, load one of these modules using a `module load` command like: ```shell -module load umap-learn/0.5.3-foss-2022a +module load umap-learn/0.5.5-foss-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|umap-learn/0.5.5-foss-2023a|x|x|x|x|x|x| +|umap-learn/0.5.3-foss-2022a|x|x|x|x|x|x| +|umap-learn/0.5.3-foss-2021a|x|x|x|x|x|x| +|umap-learn/0.4.6-fosscuda-2020b|-|-|-|-|x|-| + + +### umap-learn/0.5.5-foss-2023a + +This is a list of extensions included in the module: + +pynndescent-0.5.11, umap-learn-0.5.5 + +### umap-learn/0.5.3-foss-2022a + +This is a list of extensions included in the module: + +pynndescent-0.5.7, umap-learn-0.5.3 + +### umap-learn/0.5.3-foss-2021a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|umap-learn/0.5.3-foss-2022a|x|x|x|x|x|x|x|x| -|umap-learn/0.5.3-foss-2021a|x|x|x|x|x|x|x|x| -|umap-learn/0.4.6-fosscuda-2020b|-|-|-|-|x|-|-|-| +pynndescent-0.5.7, umap-learn-0.5.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/umi4cPackage.md b/mkdocs/docs/HPC/only/gent/available_software/detail/umi4cPackage.md index 6b3912aabd91..a35780126853 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/umi4cPackage.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/umi4cPackage.md @@ -6,6 +6,10 @@ hide: umi4cPackage ============ + +umi4cPackage is a processing and analysis pipeline for UMI-4C experiment. + +https://github.com/tanaylab/umi4cpackage # Available modules @@ -17,8 +21,8 @@ To start using umi4cPackage, load one of these modules using a `module load` com module load umi4cPackage/20200116-foss-2020a-R-4.0.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|umi4cPackage/20200116-foss-2020a-R-4.0.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|umi4cPackage/20200116-foss-2020a-R-4.0.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainties.md b/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainties.md new file mode 100644 index 000000000000..5bdb4f5e3e57 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainties.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +uncertainties +============= + + +Transparent calculations with uncertainties on the quantities involved (aka error propagation); fast calculation of derivatives + +http://uncertainties-python-package.readthedocs.io +# Available modules + + +The overview below shows which uncertainties installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using uncertainties, load one of these modules using a `module load` command like: + +```shell +module load uncertainties/3.1.7-foss-2021b +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|uncertainties/3.1.7-foss-2021b|x|x|x|x|x|x| + + +### uncertainties/3.1.7-foss-2021b + +This is a list of extensions included in the module: + +uncertainties-3.1.7 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainty-calibration.md b/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainty-calibration.md index 3ae61258c182..dcb6fdb5f9c5 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainty-calibration.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/uncertainty-calibration.md @@ -6,6 +6,10 @@ hide: uncertainty-calibration ======================= + +Python library to measure the calibration error of models, including confidence intervals computed byBootstrap resampling, and code to recalibrate models. + +https://github.com/p-lambda/verified_calibration # Available modules @@ -17,8 +21,15 @@ To start using uncertainty-calibration, load one of these modules using a `modul module load uncertainty-calibration/0.0.9-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|uncertainty-calibration/0.0.9-foss-2021b|x|x|x|-|x|x| + + +### uncertainty-calibration/0.0.9-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|uncertainty-calibration/0.0.9-foss-2021b|x|x|x|-|x|x|x|x| +parameterized-0.8.1, uncertainty-calibration-0.0.9 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/unimap.md b/mkdocs/docs/HPC/only/gent/available_software/detail/unimap.md index 934946be22ff..7b8a4b6191a3 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/unimap.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/unimap.md @@ -6,6 +6,10 @@ hide: unimap ====== + +Unimap is a fork of minimap2 optimized for assembly-to-referencealignment. It integrates the minigraph chaining algorithm and can align throughlong INDELs (up to 100kb by default) much faster than minimap2. Unimap is abetter fit for resolving segmental duplications and is recommended over minimap2for alignment between high-quality assemblies.Unimap does not replace minimap2 for other types of alignment. It drops thesupport of multi-part index and short-read mapping. Its long-read alignment isdifferent from minimap2 but is not necessarily better. Unimap is more of aspecialized minimap2 at the moment. + +https://github.com/lh3/unimap # Available modules @@ -17,8 +21,8 @@ To start using unimap, load one of these modules using a `module load` command l module load unimap/0.1-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|unimap/0.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|unimap/0.1-GCCcore-10.2.0|-|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/unixODBC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/unixODBC.md index e39f5934b7d0..fe2dfc259655 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/unixODBC.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/unixODBC.md @@ -6,6 +6,10 @@ hide: unixODBC ======== + +unixODBC provides a uniform interface betweenapplication and database driver + +https://www.unixodbc.org # Available modules @@ -17,8 +21,8 @@ To start using unixODBC, load one of these modules using a `module load` command module load unixODBC/2.3.11-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|unixODBC/2.3.11-foss-2022b|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|unixODBC/2.3.11-foss-2022b|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/utf8proc.md b/mkdocs/docs/HPC/only/gent/available_software/detail/utf8proc.md index 4d7c4fa5e6ab..9e8670066467 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/utf8proc.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/utf8proc.md @@ -6,6 +6,10 @@ hide: utf8proc ======== + +utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding. + +https://github.com/JuliaStrings/utf8proc # Available modules @@ -14,13 +18,14 @@ The overview below shows which utf8proc installations are available per HPC-UGen To start using utf8proc, load one of these modules using a `module load` command like: ```shell -module load utf8proc/2.8.0-GCCcore-12.2.0 +module load utf8proc/2.8.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|utf8proc/2.8.0-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|utf8proc/2.7.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|utf8proc/2.6.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|utf8proc/2.8.0-GCCcore-12.3.0|x|x|x|x|x|x| +|utf8proc/2.8.0-GCCcore-12.2.0|x|x|x|x|x|x| +|utf8proc/2.7.0-GCCcore-11.3.0|x|x|x|x|x|x| +|utf8proc/2.6.1-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/util-linux.md b/mkdocs/docs/HPC/only/gent/available_software/detail/util-linux.md index 090e857cf146..743c9e95648c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/util-linux.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/util-linux.md @@ -6,6 +6,10 @@ hide: util-linux ========== + +Set of Linux utilities + +http://www.kernel.org/pub/linux/utils/util-linux # Available modules @@ -17,16 +21,16 @@ To start using util-linux, load one of these modules using a `module load` comma module load util-linux/2.39-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|util-linux/2.39-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|util-linux/2.38.1-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|util-linux/2.38-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|util-linux/2.37-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|util-linux/2.36-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|util-linux/2.36-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|util-linux/2.35-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|util-linux/2.34-GCCcore-8.3.0|x|x|x|-|x|x|x|x| -|util-linux/2.33-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|util-linux/2.39-GCCcore-12.3.0|x|x|x|x|x|x| +|util-linux/2.38.1-GCCcore-12.2.0|x|x|x|x|x|x| +|util-linux/2.38-GCCcore-11.3.0|x|x|x|x|x|x| +|util-linux/2.37-GCCcore-11.2.0|x|x|x|x|x|x| +|util-linux/2.36-GCCcore-10.3.0|x|x|x|x|x|x| +|util-linux/2.36-GCCcore-10.2.0|x|x|x|x|x|x| +|util-linux/2.35-GCCcore-9.3.0|x|x|x|x|x|x| +|util-linux/2.34-GCCcore-8.3.0|x|x|x|-|x|x| +|util-linux/2.33-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vConTACT2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vConTACT2.md index 0d04ac86754d..c460d3353330 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vConTACT2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vConTACT2.md @@ -6,6 +6,10 @@ hide: vConTACT2 ========= + +vConTACT2 is a tool to perform guilt-by-contig-association classification of viral genomic sequence data. + +https://bitbucket.org/MAVERICLab/vcontact2 # Available modules @@ -17,8 +21,15 @@ To start using vConTACT2, load one of these modules using a `module load` comman module load vConTACT2/0.11.3-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|vConTACT2/0.11.3-foss-2022a|x|x|x|x|x|x| + + +### vConTACT2/0.11.3-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|vConTACT2/0.11.3-foss-2022a|x|x|x|x|x|x|x|x| +click-log-0.1.8, clusterone-0.15.3, coreapi-2.3.3, coreapi-cli-1.0.9, coreschema-0.0.4, iso8601-1.1.0, itypes-1.2.0, pytz-deprecation-shim-0.1.0.post0, raven-6.10.0, terminaltables-3.1.10, tzdata-2022.7, tzlocal-4.2, uritemplate-4.1.1, vConTACT2-0.11.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vaeda.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vaeda.md new file mode 100644 index 000000000000..06d022f86c3f --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vaeda.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +vaeda +===== + + +vaeda (variaitonal auto-encoder (vae) for doublet annotation (da)) is a Python package for doubletannotation in single cell RNA-sequencing. + +https://github.com/kostkalab/vaeda +# Available modules + + +The overview below shows which vaeda installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using vaeda, load one of these modules using a `module load` command like: + +```shell +module load vaeda/0.0.30-foss-2022a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|vaeda/0.0.30-foss-2022a|x|x|x|x|x|x| + + +### vaeda/0.0.30-foss-2022a + +This is a list of extensions included in the module: + +kneed-0.8.1, vaeda-0.0.30 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vbz_compression.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vbz_compression.md index d15ad8bb01f6..bace0a5a2fba 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vbz_compression.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vbz_compression.md @@ -6,6 +6,10 @@ hide: vbz_compression =============== + +VBZ HDF5 plugin for nanopolish + +https://github.com/nanoporetech/vbz_compression # Available modules @@ -17,8 +21,8 @@ To start using vbz_compression, load one of these modules using a `module load` module load vbz_compression/1.0.1-gompi-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|vbz_compression/1.0.1-gompi-2020b|-|x|-|-|-|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|vbz_compression/1.0.1-gompi-2020b|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vcflib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vcflib.md index e743a244a9e6..2741a4a056a2 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vcflib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vcflib.md @@ -6,6 +6,10 @@ hide: vcflib ====== + +vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed genetic variations between individuals. + +https://github.com/vcflib/vcflib # Available modules @@ -14,11 +18,12 @@ The overview below shows which vcflib installations are available per HPC-UGent To start using vcflib, load one of these modules using a `module load` command like: ```shell -module load vcflib/1.0.2-GCC-10.2.0 +module load vcflib/1.0.9-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|vcflib/1.0.2-GCC-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|vcflib/1.0.9-foss-2022a-R-4.2.1|x|x|x|x|x|x| +|vcflib/1.0.2-GCC-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/velocyto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/velocyto.md index c3358c230c53..155ab2e0df8d 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/velocyto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/velocyto.md @@ -6,6 +6,10 @@ hide: velocyto ======== + +Velocyto is a library for the analysis of RNA velocity. + +https://velocyto.org/velocyto.py/ # Available modules @@ -17,9 +21,22 @@ To start using velocyto, load one of these modules using a `module load` command module load velocyto/0.17.17-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|velocyto/0.17.17-intel-2020a-Python-3.8.2|-|x|x|-|x|x| +|velocyto/0.17.17-foss-2022a|x|x|x|x|x|x| + + +### velocyto/0.17.17-intel-2020a-Python-3.8.2 + +This is a list of extensions included in the module: + +loompy-3.0.6, numpy_groupies-0.9.13, velocyto-0.17.17 + +### velocyto/0.17.17-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|velocyto/0.17.17-intel-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|velocyto/0.17.17-foss-2022a|x|x|x|x|x|x|x|x| +loompy-3.0.7, numpy_groupies-0.9.20, velocyto-0.17.17 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/virtualenv.md b/mkdocs/docs/HPC/only/gent/available_software/detail/virtualenv.md index 47757aec6792..6ec2abd121b1 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/virtualenv.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/virtualenv.md @@ -6,6 +6,10 @@ hide: virtualenv ========== + +A tool for creating isolated virtual python environments. + +https://github.com/pypa/virtualenv # Available modules @@ -14,11 +18,25 @@ The overview below shows which virtualenv installations are available per HPC-UG To start using virtualenv, load one of these modules using a `module load` command like: ```shell -module load virtualenv/20.23.1-GCCcore-12.3.0 +module load virtualenv/20.24.6-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|virtualenv/20.24.6-GCCcore-13.2.0|x|x|x|x|x|x| +|virtualenv/20.23.1-GCCcore-12.3.0|x|x|x|x|x|x| + + +### virtualenv/20.24.6-GCCcore-13.2.0 + +This is a list of extensions included in the module: + +distlib-0.3.7, filelock-3.13.0, platformdirs-3.11.0, virtualenv-20.24.6 + +### virtualenv/20.23.1-GCCcore-12.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|virtualenv/20.23.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x| +distlib-0.3.6, filelock-3.12.2, platformdirs-3.8.0, virtualenv-20.23.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vispr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vispr.md index 7ef6b6f2bdd0..004380469fbb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vispr.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vispr.md @@ -6,6 +6,10 @@ hide: vispr ===== + +VISPR - A visualization framework for CRISPR data. + +https://pypi.org/project/vispr/ # Available modules @@ -17,8 +21,8 @@ To start using vispr, load one of these modules using a `module load` command li module load vispr/0.4.14-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|vispr/0.4.14-foss-2022a|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|vispr/0.4.14-foss-2022a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vitessce-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vitessce-python.md index d8e62c8f7b2c..bf8daa6c4bb4 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vitessce-python.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vitessce-python.md @@ -6,6 +6,10 @@ hide: vitessce-python =============== + +Python API and Jupyter widget facilitating interactivevisualization of spatial single-cell data with Vitessce. + +https://github.com/vitessce/vitessce-python # Available modules @@ -17,8 +21,15 @@ To start using vitessce-python, load one of these modules using a `module load` module load vitessce-python/20230222-foss-2022a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|vitessce-python/20230222-foss-2022a|x|x|x|x|x|x| + + +### vitessce-python/20230222-foss-2022a + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|vitessce-python/20230222-foss-2022a|x|x|x|x|x|x|x|x| +anndata-0.8.0, black-23.1.0, fsspec-2023.1.0, hatch-fancy-pypi-readme-22.8.0, hatch-vcs-0.3.0, hatchling-1.11.1, mypy_extensions-1.0.0, natsort-8.2.0, negspy-0.2.24, ome-zarr-0.2.1, pathspec-0.10.1, tifffile-2022.10.10, vitessce-python-20230222 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vitessceR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vitessceR.md index 5accaaf1bbe3..12cf8488bb6b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vitessceR.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vitessceR.md @@ -6,6 +6,10 @@ hide: vitessceR ========= + +Vitessce is a visual integration tool for exploration of spatial single-cell experiments. + +https://github.com/vitessce/vitessceR # Available modules @@ -17,8 +21,15 @@ To start using vitessceR, load one of these modules using a `module load` comman module load vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1|x|x|x|x|x|x| + + +### vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1|x|x|x|x|x|x|x|x| +plumber-1.2.1, sodium-1.2.1, vitessceR-0.99.0-20230110 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vsc-mympirun.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vsc-mympirun.md index f22bd65b92d8..130e5e0d5157 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vsc-mympirun.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vsc-mympirun.md @@ -6,6 +6,10 @@ hide: vsc-mympirun ============ + +mympirun is a tool to make it easier for users of HPC clusters torun MPI programs with good performance. + +https://github.com/hpcugent/vsc-mympirun # Available modules @@ -17,20 +21,99 @@ To start using vsc-mympirun, load one of these modules using a `module load` com module load vsc-mympirun/5.3.1 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|vsc-mympirun/5.3.1|x|x|x|x|x|x|x|x| -|vsc-mympirun/5.3.0|x|x|x|x|x|x|x|x| -|vsc-mympirun/5.2.11|x|x|x|x|x|x|x|x| -|vsc-mympirun/5.2.10|x|x|x|-|x|x|x|x| -|vsc-mympirun/5.2.9|x|x|x|-|x|x|x|x| -|vsc-mympirun/5.2.7|x|x|x|-|x|x|x|x| -|vsc-mympirun/5.2.6|x|x|x|-|x|x|x|x| -|vsc-mympirun/5.2.5|-|x|-|-|-|-|x|-| -|vsc-mympirun/5.2.4|-|x|-|-|-|-|-|-| -|vsc-mympirun/5.2.3|-|x|-|-|-|-|-|-| -|vsc-mympirun/5.2.2|-|x|-|-|-|-|-|-| -|vsc-mympirun/5.2.0|-|x|-|-|-|-|-|-| -|vsc-mympirun/5.1.0|-|x|-|-|-|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|vsc-mympirun/5.3.1|x|x|x|x|x|x| +|vsc-mympirun/5.3.0|x|x|x|x|x|x| +|vsc-mympirun/5.2.11|x|x|x|x|x|x| +|vsc-mympirun/5.2.10|x|x|x|-|x|x| +|vsc-mympirun/5.2.9|x|x|x|-|x|x| +|vsc-mympirun/5.2.7|x|x|x|-|x|x| +|vsc-mympirun/5.2.6|x|x|x|-|x|x| +|vsc-mympirun/5.2.5|-|x|-|-|-|-| +|vsc-mympirun/5.2.4|-|x|-|-|-|-| +|vsc-mympirun/5.2.3|-|x|-|-|-|-| +|vsc-mympirun/5.2.2|-|x|-|-|-|-| +|vsc-mympirun/5.2.0|-|x|-|-|-|-| +|vsc-mympirun/5.1.0|-|x|-|-|-|-| + + +### vsc-mympirun/5.3.1 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.3, IPy-1.01, mock-5.0.2, pbr-5.11.1, setuptools-41.6.0, vsc-base-3.5.3, vsc-install-0.18.5, vsc-mympirun-5.3.1 + +### vsc-mympirun/5.3.0 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.3, IPy-1.01, mock-5.0.1, pbr-5.11.1, setuptools-41.6.0, vsc-base-3.5.2, vsc-install-0.18.0, vsc-mympirun-5.3.0 + +### vsc-mympirun/5.2.11 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.1, setuptools-41.6.0, vsc-base-3.4.3, vsc-install-0.17.22, vsc-mympirun-5.2.11 + +### vsc-mympirun/5.2.10 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.1, setuptools-41.6.0, vsc-base-3.4.3, vsc-install-0.17.21, vsc-mympirun-5.2.10 + +### vsc-mympirun/5.2.9 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.1, setuptools-41.6.0, vsc-base-3.4.3, vsc-install-0.17.21, vsc-mympirun-5.2.9 + +### vsc-mympirun/5.2.7 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.8.0, setuptools-41.6.0, vsc-base-3.4.0, vsc-install-0.17.19, vsc-mympirun-5.2.7 + +### vsc-mympirun/5.2.6 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.01, mock-4.0.3, pbr-5.6.0, setuptools-41.6.0, vsc-base-3.3.1, vsc-install-0.17.15, vsc-mympirun-5.2.6 + +### vsc-mympirun/5.2.5 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.5 + +### vsc-mympirun/5.2.4 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.4 + +### vsc-mympirun/5.2.3 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.3 + +### vsc-mympirun/5.2.2 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.2 + +### vsc-mympirun/5.2.0 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.5.1, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.17.1, vsc-mympirun-5.2.0 + +### vsc-mympirun/5.1.0 + +This is a list of extensions included in the module: + +funcsigs-1.0.2, future-0.18.2, IPy-1.00, mock-4.0.2, pbr-5.4.5, setuptools-41.6.0, vsc-base-3.1.4, vsc-install-0.15.14, vsc-mympirun-5.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/vt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/vt.md index 21bfc3c7f4e6..0b74f039dca9 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/vt.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/vt.md @@ -6,6 +6,10 @@ hide: vt == + +A tool set for short variant discovery in genetic sequence data. + +https://genome.sph.umich.edu/wiki/Vt # Available modules @@ -17,8 +21,8 @@ To start using vt, load one of these modules using a `module load` command like: module load vt/0.57721-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|vt/0.57721-GCC-10.2.0|-|x|x|-|x|-|x|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|vt/0.57721-GCC-10.2.0|-|x|x|-|x|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wandb.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wandb.md index c30b63cded20..4125330a753a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wandb.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wandb.md @@ -6,6 +6,10 @@ hide: wandb ===== + +CLI and Python API for Weights and Biases: a tool for visualizing and trackingyour machine learning experiments. + +https://www.wandb.com/ # Available modules @@ -17,8 +21,22 @@ To start using wandb, load one of these modules using a `module load` command li module load wandb/0.13.6-GCC-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|wandb/0.13.6-GCC-11.3.0|x|x|x|-|x|x| +|wandb/0.13.4-GCCcore-11.3.0|-|-|x|-|x|-| + + +### wandb/0.13.6-GCC-11.3.0 + +This is a list of extensions included in the module: + +docker-pycreds-0.4.0, pathtools-0.1.2, promise-2.3, sentry-sdk-1.11.1, setproctitle-1.3.2, shortuuid-1.0.11, urllib3-1.26.13, wandb-0.13.6 + +### wandb/0.13.4-GCCcore-11.3.0 + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|wandb/0.13.6-GCC-11.3.0|x|x|x|-|x|x|x|x| +charset-normalizer-2.0.12, docker-pycreds-0.4.0, pathtools-0.1.2, promise-2.3, sentry-sdk-1.8.0, setproctitle-1.3.2, shortuuid-1.0.9, termcolor-1.1.0, wandb-0.13.4, yaspin-2.1.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/waves2Foam.md b/mkdocs/docs/HPC/only/gent/available_software/detail/waves2Foam.md index 877ff9dc6ebc..8e307b8ca2fa 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/waves2Foam.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/waves2Foam.md @@ -6,6 +6,10 @@ hide: waves2Foam ========== + +The library waves2Foam is a toolbox used to generate and absorb free surface water waves. + +https://openfoamwiki.net/index.php/Contrib/waves2Foam # Available modules @@ -17,8 +21,8 @@ To start using waves2Foam, load one of these modules using a `module load` comma module load waves2Foam/20200703-foss-2019b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|waves2Foam/20200703-foss-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|waves2Foam/20200703-foss-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wget.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wget.md index 0f06e7825e6f..a162b62225a7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wget.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wget.md @@ -6,6 +6,10 @@ hide: wget ==== + +GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It is a non-interactive commandline tool, so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc. + +https://www.gnu.org/software/wget # Available modules @@ -17,10 +21,10 @@ To start using wget, load one of these modules using a `module load` command lik module load wget/1.21.1-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|wget/1.21.1-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|wget/1.20.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|wget/1.20.3-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|wget/1.21.1-GCCcore-10.3.0|-|x|x|x|x|x| +|wget/1.20.3-GCCcore-10.2.0|x|x|x|x|x|x| +|wget/1.20.3-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wgsim.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wgsim.md index c0602d9551f0..2261e0bc02eb 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wgsim.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wgsim.md @@ -6,6 +6,10 @@ hide: wgsim ===== + +Wgsim is a small tool for simulating sequence reads from a reference genome. + +https://github.com/lh3/wgsim/ # Available modules @@ -17,8 +21,8 @@ To start using wgsim, load one of these modules using a `module load` command li module load wgsim/20111017-GCC-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|wgsim/20111017-GCC-10.2.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|wgsim/20111017-GCC-10.2.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/worker.md b/mkdocs/docs/HPC/only/gent/available_software/detail/worker.md index b985da35d22e..5893ec6fdaec 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/worker.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/worker.md @@ -6,6 +6,10 @@ hide: worker ====== + +The Worker framework has been developed to help deal with parameter exploration experiments that would otherwise result in many jobs, forcing the user resort to scripting to retain her sanity; see also https://vscentrum.be/neutral/documentation/cluster-doc/running-jobs/worker-framework. + +https://github.com/gjbex/worker # Available modules @@ -14,13 +18,14 @@ The overview below shows which worker installations are available per HPC-UGent To start using worker, load one of these modules using a `module load` command like: ```shell -module load worker/1.6.13-iimpi-2021b +module load worker/1.6.13-iimpi-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|worker/1.6.13-iimpi-2021b|x|x|x|-|x|x|x|x| -|worker/1.6.12-foss-2021b|x|x|x|-|x|x|x|x| -|worker/1.6.11-intel-2019b|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|worker/1.6.13-iimpi-2022b|x|x|x|x|x|x| +|worker/1.6.13-iimpi-2021b|x|x|x|-|x|x| +|worker/1.6.12-foss-2021b|x|x|x|-|x|x| +|worker/1.6.11-intel-2019b|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wpebackend-fdo.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wpebackend-fdo.md index 082f0fb413f5..ed4ddf675953 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wpebackend-fdo.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wpebackend-fdo.md @@ -6,6 +6,10 @@ hide: wpebackend-fdo ============== + +WPE WebKit allows embedders to create simple and performant systems based on Web platform technologies. It is a WebKit port designed with flexibility and hardware acceleration in mind, leveraging common 3D graphics APIs for best performance. + +https://wpewebkit.org/ # Available modules @@ -17,8 +21,8 @@ To start using wpebackend-fdo, load one of these modules using a `module load` c module load wpebackend-fdo/1.13.1-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|wpebackend-fdo/1.13.1-GCCcore-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|wpebackend-fdo/1.13.1-GCCcore-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wrapt.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wrapt.md new file mode 100644 index 000000000000..55ce3c1580ad --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wrapt.md @@ -0,0 +1,49 @@ +--- +hide: + - toc +--- + +wrapt +===== + + +The aim of the wrapt module is to provide a transparent objectproxy for Python, which can be used as the basis for the construction offunction wrappers and decorator functions. + +https://pypi.org/project/wrapt/ +# Available modules + + +The overview below shows which wrapt installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using wrapt, load one of these modules using a `module load` command like: + +```shell +module load wrapt/1.15.0-gfbf-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|wrapt/1.15.0-gfbf-2023a|x|x|x|x|x|x| +|wrapt/1.15.0-foss-2022b|x|x|x|x|x|x| +|wrapt/1.15.0-foss-2022a|x|x|x|x|x|x| + + +### wrapt/1.15.0-gfbf-2023a + +This is a list of extensions included in the module: + +wrapt-1.15.0 + +### wrapt/1.15.0-foss-2022b + +This is a list of extensions included in the module: + +wrapt-1.15.0 + +### wrapt/1.15.0-foss-2022a + +This is a list of extensions included in the module: + +wrapt-1.15.0 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wrf-python.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wrf-python.md new file mode 100644 index 000000000000..7dde80902bfd --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wrf-python.md @@ -0,0 +1,35 @@ +--- +hide: + - toc +--- + +wrf-python +========== + + +A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model. + +https://wrf-python.readthedocs.io +# Available modules + + +The overview below shows which wrf-python installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using wrf-python, load one of these modules using a `module load` command like: + +```shell +module load wrf-python/1.3.4.1-foss-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|wrf-python/1.3.4.1-foss-2023a|x|x|x|x|x|x| + + +### wrf-python/1.3.4.1-foss-2023a + +This is a list of extensions included in the module: + +wrapt-1.16.0, wrf-python-1.3.4.1 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wtdbg2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wtdbg2.md index d3c5bce30b87..8bc709fa1bbc 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wtdbg2.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wtdbg2.md @@ -6,6 +6,10 @@ hide: wtdbg2 ====== + +Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. + +https://github.com/ruanjue/wtdbg2 # Available modules @@ -17,8 +21,8 @@ To start using wtdbg2, load one of these modules using a `module load` command l module load wtdbg2/2.5-GCCcore-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|wtdbg2/2.5-GCCcore-11.2.0|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|wtdbg2/2.5-GCCcore-11.2.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wxPython.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wxPython.md index 70dc757c6751..9c62ad2e151b 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wxPython.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wxPython.md @@ -6,6 +6,10 @@ hide: wxPython ======== + +Wraps the wxWidgets C++ toolkit and provides access to the user interface portions of the wxWidgets API, enabling Python applications to have a native GUI on Windows, Macs or Unix systems, with a native look and feel and requiring very little (if any) platform specific code. + +https://www.wxpython.org/ # Available modules @@ -17,9 +21,9 @@ To start using wxPython, load one of these modules using a `module load` command module load wxPython/4.2.0-foss-2021b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|wxPython/4.2.0-foss-2021b|x|x|x|x|x|x|x|x| -|wxPython/4.1.1-foss-2021a|x|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|wxPython/4.2.0-foss-2021b|x|x|x|x|x|x| +|wxPython/4.1.1-foss-2021a|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/wxWidgets.md b/mkdocs/docs/HPC/only/gent/available_software/detail/wxWidgets.md index c135e2fd143a..bb5a70efcb2c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/wxWidgets.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/wxWidgets.md @@ -6,6 +6,10 @@ hide: wxWidgets ========= + +wxWidgets is a C++ library that lets developers createapplications for Windows, Mac OS X, Linux and other platforms with asingle code base. It has popular language bindings for Python, Perl,Ruby and many other languages, and unlike other cross-platform toolkits,wxWidgets gives applications a truly native look and feel because ituses the platform's native API rather than emulating the GUI. + +https://www.wxwidgets.org # Available modules @@ -17,8 +21,8 @@ To start using wxWidgets, load one of these modules using a `module load` comman module load wxWidgets/3.2.0-GCC-11.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|wxWidgets/3.2.0-GCC-11.2.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|wxWidgets/3.2.0-GCC-11.2.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/x264.md b/mkdocs/docs/HPC/only/gent/available_software/detail/x264.md index 9152c868f35d..e02b1a9993a6 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/x264.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/x264.md @@ -6,6 +6,10 @@ hide: x264 ==== + +x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL. + +https://www.videolan.org/developers/x264.html # Available modules @@ -14,16 +18,18 @@ The overview below shows which x264 installations are available per HPC-UGent Ti To start using x264, load one of these modules using a `module load` command like: ```shell -module load x264/20220620-GCCcore-11.3.0 +module load x264/20230226-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|x264/20220620-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|x264/20210613-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|x264/20210414-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|x264/20201026-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|x264/20191217-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|x264/20190925-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|x264/20230226-GCCcore-12.3.0|x|x|x|x|x|x| +|x264/20230226-GCCcore-12.2.0|x|x|x|x|x|x| +|x264/20220620-GCCcore-11.3.0|x|x|x|x|x|x| +|x264/20210613-GCCcore-11.2.0|x|x|x|x|x|x| +|x264/20210414-GCCcore-10.3.0|x|x|x|x|x|x| +|x264/20201026-GCCcore-10.2.0|x|x|x|x|x|x| +|x264/20191217-GCCcore-9.3.0|-|x|x|-|x|x| +|x264/20190925-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/x265.md b/mkdocs/docs/HPC/only/gent/available_software/detail/x265.md index 4687288e78c7..046035fa4a0e 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/x265.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/x265.md @@ -6,6 +6,10 @@ hide: x265 ==== + +x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL. + +https://x265.org/ # Available modules @@ -14,16 +18,18 @@ The overview below shows which x265 installations are available per HPC-UGent Ti To start using x265, load one of these modules using a `module load` command like: ```shell -module load x265/3.5-GCCcore-11.3.0 +module load x265/3.5-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|x265/3.5-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|x265/3.5-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|x265/3.5-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|x265/3.3-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|x265/3.3-GCCcore-9.3.0|-|x|x|-|x|x|x|x| -|x265/3.2-GCCcore-8.3.0|x|x|x|-|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|x265/3.5-GCCcore-12.3.0|x|x|x|x|x|x| +|x265/3.5-GCCcore-12.2.0|x|x|x|x|x|x| +|x265/3.5-GCCcore-11.3.0|x|x|x|x|x|x| +|x265/3.5-GCCcore-11.2.0|x|x|x|x|x|x| +|x265/3.5-GCCcore-10.3.0|x|x|x|x|x|x| +|x265/3.3-GCCcore-10.2.0|x|x|x|x|x|x| +|x265/3.3-GCCcore-9.3.0|-|x|x|-|x|x| +|x265/3.2-GCCcore-8.3.0|x|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xESMF.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xESMF.md index 1e83c262ffc4..3bbf273c4888 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xESMF.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xESMF.md @@ -6,6 +6,10 @@ hide: xESMF ===== + +xESMF: Universal Regridder for Geospatial Data + +https://xesmf.readthedocs.io # Available modules @@ -17,9 +21,9 @@ To start using xESMF, load one of these modules using a `module load` command li module load xESMF/0.3.0-intel-2020b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|xESMF/0.3.0-intel-2020b|-|x|x|-|x|x|x|x| -|xESMF/0.3.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|xESMF/0.3.0-intel-2020b|-|x|x|-|x|x| +|xESMF/0.3.0-foss-2020a-Python-3.8.2|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xarray.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xarray.md index ec82f0f852d6..a455148ee431 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xarray.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xarray.md @@ -6,6 +6,10 @@ hide: xarray ====== + +xarray (formerly xray) is an open source project and Python package that aims to bring the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the core pandas data structures. + +https://github.com/pydata/xarray # Available modules @@ -14,19 +18,34 @@ The overview below shows which xarray installations are available per HPC-UGent To start using xarray, load one of these modules using a `module load` command like: ```shell -module load xarray/2023.4.2-gfbf-2022b +module load xarray/2023.9.0-gfbf-2023a ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|xarray/2023.4.2-gfbf-2022b|x|x|x|x|x|x|x|x| -|xarray/2022.6.0-foss-2022a|x|x|x|x|x|x|x|x| -|xarray/0.20.1-intel-2021b|x|x|x|-|x|x|x|x| -|xarray/0.20.1-foss-2021b|x|x|x|x|x|x|x|x| -|xarray/0.16.2-intel-2020b|-|x|x|-|x|x|x|x| -|xarray/0.16.2-fosscuda-2020b|-|-|-|-|x|-|-|-| -|xarray/0.16.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x|x|x| -|xarray/0.15.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|xarray/0.15.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|xarray/2023.9.0-gfbf-2023a|x|x|x|x|x|x| +|xarray/2023.4.2-gfbf-2022b|x|x|x|x|x|x| +|xarray/2022.6.0-foss-2022a|x|x|x|x|x|x| +|xarray/0.20.1-intel-2021b|x|x|x|-|x|x| +|xarray/0.20.1-foss-2021b|x|x|x|x|x|x| +|xarray/0.19.0-foss-2021a|x|x|x|x|x|x| +|xarray/0.16.2-intel-2020b|-|x|x|-|x|x| +|xarray/0.16.2-fosscuda-2020b|-|-|-|-|x|-| +|xarray/0.16.1-foss-2020a-Python-3.8.2|-|x|x|-|x|x| +|xarray/0.15.1-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|xarray/0.15.1-foss-2019b-Python-3.7.4|-|x|x|-|x|x| + + +### xarray/2023.9.0-gfbf-2023a + +This is a list of extensions included in the module: + +xarray-2023.9.0 + +### xarray/2023.4.2-gfbf-2022b + +This is a list of extensions included in the module: + +xarray-2023.4.2 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xorg-macros.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xorg-macros.md index 6f9cb8b90d36..077e3705fa4a 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xorg-macros.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xorg-macros.md @@ -6,6 +6,10 @@ hide: xorg-macros =========== + +X.org macros utilities. + +https://cgit.freedesktop.org/xorg/util/macros # Available modules @@ -14,19 +18,20 @@ The overview below shows which xorg-macros installations are available per HPC-U To start using xorg-macros, load one of these modules using a `module load` command like: ```shell -module load xorg-macros/1.20.0-GCCcore-12.3.0 +module load xorg-macros/1.20.0-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|xorg-macros/1.20.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|xorg-macros/1.19.3-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|xorg-macros/1.19.3-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|xorg-macros/1.19.3-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|xorg-macros/1.19.3-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|xorg-macros/1.19.2-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|xorg-macros/1.19.2-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|xorg-macros/1.19.2-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|xorg-macros/1.19.2-GCCcore-8.2.0|-|x|-|-|-|-|x|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|xorg-macros/1.20.0-GCCcore-13.2.0|x|x|x|x|x|x| +|xorg-macros/1.20.0-GCCcore-12.3.0|x|x|x|x|x|x| +|xorg-macros/1.19.3-GCCcore-12.2.0|x|x|x|x|x|x| +|xorg-macros/1.19.3-GCCcore-11.3.0|x|x|x|x|x|x| +|xorg-macros/1.19.3-GCCcore-11.2.0|x|x|x|x|x|x| +|xorg-macros/1.19.3-GCCcore-10.3.0|x|x|x|x|x|x| +|xorg-macros/1.19.2-GCCcore-10.2.0|x|x|x|x|x|x| +|xorg-macros/1.19.2-GCCcore-9.3.0|x|x|x|x|x|x| +|xorg-macros/1.19.2-GCCcore-8.3.0|x|x|x|x|x|x| +|xorg-macros/1.19.2-GCCcore-8.2.0|-|x|-|-|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xprop.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xprop.md index 97f8bc26985b..457a2de894a7 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xprop.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xprop.md @@ -6,6 +6,10 @@ hide: xprop ===== + +The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information. + +https://www.x.org/wiki/ # Available modules @@ -17,9 +21,9 @@ To start using xprop, load one of these modules using a `module load` command li module load xprop/1.2.5-GCCcore-10.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|xprop/1.2.5-GCCcore-10.2.0|-|x|x|x|x|x|x|x| -|xprop/1.2.4-GCCcore-9.3.0|-|x|x|-|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|xprop/1.2.5-GCCcore-10.2.0|-|x|x|x|x|x| +|xprop/1.2.4-GCCcore-9.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xproto.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xproto.md index 2027f67e2dd0..ed76e182f707 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xproto.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xproto.md @@ -6,6 +6,10 @@ hide: xproto ====== + +X protocol and ancillary headers + +https://www.freedesktop.org/wiki/Software/xlibs # Available modules @@ -17,9 +21,9 @@ To start using xproto, load one of these modules using a `module load` command l module load xproto/7.0.31-GCCcore-10.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|xproto/7.0.31-GCCcore-10.3.0|-|x|x|-|x|x|x|x| -|xproto/7.0.31-GCCcore-8.3.0|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|xproto/7.0.31-GCCcore-10.3.0|-|x|x|-|x|x| +|xproto/7.0.31-GCCcore-8.3.0|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xtb.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xtb.md new file mode 100644 index 000000000000..8ad75cd70760 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xtb.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +xtb +=== + + +xtb - An extended tight-binding semi-empirical program package. + +https://xtb-docs.readthedocs.io +# Available modules + + +The overview below shows which xtb installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using xtb, load one of these modules using a `module load` command like: + +```shell +module load xtb/6.6.1-gfbf-2023a +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|xtb/6.6.1-gfbf-2023a|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/xxd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/xxd.md index 3d943ce7bcbf..459e67ce4766 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/xxd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/xxd.md @@ -6,6 +6,10 @@ hide: xxd === + +xxd is part of the VIM package and this will only install xxd, not vim!xxd converts to/from hexdumps of binary files. + +https://www.vim.org # Available modules @@ -14,15 +18,16 @@ The overview below shows which xxd installations are available per HPC-UGent Tie To start using xxd, load one of these modules using a `module load` command like: ```shell -module load xxd/9.0.1696-GCCcore-12.2.0 +module load xxd/9.0.2112-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|xxd/9.0.1696-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|xxd/8.2.4220-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|xxd/8.2.4220-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|xxd/8.2.4220-GCCcore-10.3.0|-|-|-|x|-|-|-|-| -|xxd/8.2.4220-GCCcore-10.2.0|-|-|-|x|-|-|-|-| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|xxd/9.0.2112-GCCcore-12.3.0|x|x|x|x|x|x| +|xxd/9.0.1696-GCCcore-12.2.0|x|x|x|x|x|x| +|xxd/8.2.4220-GCCcore-11.3.0|x|x|x|x|x|x| +|xxd/8.2.4220-GCCcore-11.2.0|x|x|x|-|x|x| +|xxd/8.2.4220-GCCcore-10.3.0|-|-|-|x|-|-| +|xxd/8.2.4220-GCCcore-10.2.0|-|-|-|x|-|-| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/yaff.md b/mkdocs/docs/HPC/only/gent/available_software/detail/yaff.md index db82a3caaa2c..423300567b1c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/yaff.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/yaff.md @@ -6,6 +6,10 @@ hide: yaff ==== + +Yaff stands for 'Yet another force field'. It is a pythonic force-field code. + +https://molmod.github.io/yaff/ # Available modules @@ -17,10 +21,10 @@ To start using yaff, load one of these modules using a `module load` command lik module load yaff/1.6.0-intel-2020a-Python-3.8.2 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|yaff/1.6.0-intel-2020a-Python-3.8.2|x|x|x|x|x|x|x|x| -|yaff/1.6.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| -|yaff/1.6.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|yaff/1.6.0-intel-2020a-Python-3.8.2|x|x|x|x|x|x| +|yaff/1.6.0-intel-2019b-Python-3.7.4|-|x|x|-|x|x| +|yaff/1.6.0-foss-2019b-Python-3.7.4|-|x|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/yaml-cpp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/yaml-cpp.md index 4e1d5ebc507e..95383cd1da89 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/yaml-cpp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/yaml-cpp.md @@ -6,6 +6,10 @@ hide: yaml-cpp ======== + +yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec + +https://github.com/jbeder/yaml-cpp # Available modules @@ -14,12 +18,13 @@ The overview below shows which yaml-cpp installations are available per HPC-UGen To start using yaml-cpp, load one of these modules using a `module load` command like: ```shell -module load yaml-cpp/0.7.0-GCCcore-11.2.0 +module load yaml-cpp/0.7.0-GCCcore-12.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|yaml-cpp/0.7.0-GCCcore-11.2.0|x|x|x|-|x|x|x|x| -|yaml-cpp/0.6.3-GCCcore-8.3.0|-|-|x|-|x|x|-|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|yaml-cpp/0.7.0-GCCcore-12.3.0|x|x|x|x|x|x| +|yaml-cpp/0.7.0-GCCcore-11.2.0|x|x|x|-|x|x| +|yaml-cpp/0.6.3-GCCcore-8.3.0|-|-|x|-|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zUMIs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zUMIs.md new file mode 100644 index 000000000000..75d981f4ac86 --- /dev/null +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zUMIs.md @@ -0,0 +1,28 @@ +--- +hide: + - toc +--- + +zUMIs +===== + + +A fast and flexible pipeline to process RNA sequencing data with UMIs. + +https://github.com/sdparekh/zUMIs +# Available modules + + +The overview below shows which zUMIs installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old). + +To start using zUMIs, load one of these modules using a `module load` command like: + +```shell +module load zUMIs/2.9.7-foss-2023a-R-4.3.2 +``` + +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|zUMIs/2.9.7-foss-2023a-R-4.3.2|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zarr.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zarr.md index 0c1f9fc475dd..4fddbd4b26ea 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zarr.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zarr.md @@ -6,6 +6,10 @@ hide: zarr ==== + +Zarr is a Python package providing an implementation of compressed, chunked, N-dimensional arrays, designed for use in parallel computing. + +https://zarr.readthedocs.io/en/stable/ # Available modules @@ -17,10 +21,29 @@ To start using zarr, load one of these modules using a `module load` command lik module load zarr/2.16.0-foss-2022b ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|zarr/2.16.0-foss-2022b|x|x|x|x|x|x| +|zarr/2.13.3-foss-2022a|x|x|x|x|x|x| +|zarr/2.13.3-foss-2021b|x|x|x|x|x|x| + + +### zarr/2.16.0-foss-2022b + +This is a list of extensions included in the module: + +asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.11.0, zarr-2.16.0 + +### zarr/2.13.3-foss-2022a + +This is a list of extensions included in the module: + +asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.10.2, zarr-2.13.3 + +### zarr/2.13.3-foss-2021b + +This is a list of extensions included in the module: -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|zarr/2.16.0-foss-2022b|x|x|x|x|x|x|x|x| -|zarr/2.13.3-foss-2022a|x|x|x|x|x|x|x|x| -|zarr/2.13.3-foss-2021b|x|x|x|x|x|x|x|x| +asciitree-0.3.3, entrypoints-0.4, fasteners-0.18, monotonic-1.6, numcodecs-0.10.2, zarr-2.13.3 \ No newline at end of file diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zfp.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zfp.md index 0710ea4efd6b..0e8084892a39 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zfp.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zfp.md @@ -6,6 +6,10 @@ hide: zfp === + +zfp is a compressed format for representing multidimensional floating-point and integer arrays.zfp provides compressed-array classes that support high throughput read and write random access to individual arrayelements. zfp also supports serial and parallel (OpenMP and CUDA) compression of whole arrays, e.g., for applicationsthat read and write large data sets to and from disk. + +https://github.com/LLNL/zfp # Available modules @@ -17,8 +21,8 @@ To start using zfp, load one of these modules using a `module load` command like module load zfp/1.0.0-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|zfp/1.0.0-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|zfp/1.0.0-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zlib-ng.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zlib-ng.md index 13a6bf37ad65..114b0b2dba50 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zlib-ng.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zlib-ng.md @@ -6,6 +6,10 @@ hide: zlib-ng ======= + +zlib data compression library for the next generation systems + +https://github.com/zlib-ng/zlib-ng # Available modules @@ -17,8 +21,8 @@ To start using zlib-ng, load one of these modules using a `module load` command module load zlib-ng/2.0.7-GCCcore-11.3.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|zlib-ng/2.0.7-GCCcore-11.3.0|x|x|x|x|x|x|x|x| +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|zlib-ng/2.0.7-GCCcore-11.3.0|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zlib.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zlib.md index f2e281758fb3..ec96523af447 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zlib.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zlib.md @@ -6,6 +6,10 @@ hide: zlib ==== + +zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system. + +http://www.zlib.net/ # Available modules @@ -14,22 +18,23 @@ The overview below shows which zlib installations are available per HPC-UGent Ti To start using zlib, load one of these modules using a `module load` command like: ```shell -module load zlib/1.2.13-GCCcore-12.3.0 +module load zlib/1.2.13-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|zlib/1.2.13-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|zlib/1.2.13|x|x|x|x|x|x|x|x| -|zlib/1.2.12-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|zlib/1.2.12-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|zlib/1.2.12|x|x|x|x|x|x|x|x| -|zlib/1.2.11-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|zlib/1.2.11-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|zlib/1.2.11-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|zlib/1.2.11-GCCcore-9.3.0|x|x|x|x|x|x|x|x| -|zlib/1.2.11-GCCcore-8.3.0|x|x|x|x|x|x|x|x| -|zlib/1.2.11-GCCcore-8.2.0|-|x|-|-|-|-|x|-| -|zlib/1.2.11|x|x|x|x|x|x|x|x| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|zlib/1.2.13-GCCcore-13.2.0|x|x|x|x|x|x| +|zlib/1.2.13-GCCcore-12.3.0|x|x|x|x|x|x| +|zlib/1.2.13|x|x|x|x|x|x| +|zlib/1.2.12-GCCcore-12.2.0|x|x|x|x|x|x| +|zlib/1.2.12-GCCcore-11.3.0|x|x|x|x|x|x| +|zlib/1.2.12|x|x|x|x|x|x| +|zlib/1.2.11-GCCcore-11.2.0|x|x|x|x|x|x| +|zlib/1.2.11-GCCcore-10.3.0|x|x|x|x|x|x| +|zlib/1.2.11-GCCcore-10.2.0|x|x|x|x|x|x| +|zlib/1.2.11-GCCcore-9.3.0|x|x|x|x|x|x| +|zlib/1.2.11-GCCcore-8.3.0|x|x|x|x|x|x| +|zlib/1.2.11-GCCcore-8.2.0|-|x|-|-|-|-| +|zlib/1.2.11|x|x|x|x|x|x| diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/zstd.md b/mkdocs/docs/HPC/only/gent/available_software/detail/zstd.md index a1a45d75e1a2..31805e6fa34c 100644 --- a/mkdocs/docs/HPC/only/gent/available_software/detail/zstd.md +++ b/mkdocs/docs/HPC/only/gent/available_software/detail/zstd.md @@ -6,6 +6,10 @@ hide: zstd ==== + +Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set. + +https://facebook.github.io/zstd # Available modules @@ -14,18 +18,19 @@ The overview below shows which zstd installations are available per HPC-UGent Ti To start using zstd, load one of these modules using a `module load` command like: ```shell -module load zstd/1.5.5-GCCcore-12.3.0 +module load zstd/1.5.5-GCCcore-13.2.0 ``` -*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)* - -| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini| -| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | -|zstd/1.5.5-GCCcore-12.3.0|x|x|x|x|x|x|x|x| -|zstd/1.5.2-GCCcore-12.2.0|x|x|x|x|x|x|x|x| -|zstd/1.5.2-GCCcore-11.3.0|x|x|x|x|x|x|x|x| -|zstd/1.5.0-GCCcore-11.2.0|x|x|x|x|x|x|x|x| -|zstd/1.4.9-GCCcore-10.3.0|x|x|x|x|x|x|x|x| -|zstd/1.4.5-GCCcore-10.2.0|x|x|x|x|x|x|x|x| -|zstd/1.4.4-GCCcore-9.3.0|-|x|x|x|x|x|x|x| -|zstd/1.4.4-GCCcore-8.3.0|x|-|-|-|x|-|-|-| +*(This data was automatically generated on Thu, 07 Mar 2024 at 18:35:40 CET)* + +| |accelgor|doduo|donphan|gallade|joltik|skitty| +| :---: | :---: | :---: | :---: | :---: | :---: | :---: | +|zstd/1.5.5-GCCcore-13.2.0|x|x|x|x|x|x| +|zstd/1.5.5-GCCcore-12.3.0|x|x|x|x|x|x| +|zstd/1.5.2-GCCcore-12.2.0|x|x|x|x|x|x| +|zstd/1.5.2-GCCcore-11.3.0|x|x|x|x|x|x| +|zstd/1.5.0-GCCcore-11.2.0|x|x|x|x|x|x| +|zstd/1.4.9-GCCcore-10.3.0|x|x|x|x|x|x| +|zstd/1.4.5-GCCcore-10.2.0|x|x|x|x|x|x| +|zstd/1.4.4-GCCcore-9.3.0|-|x|x|x|x|x| +|zstd/1.4.4-GCCcore-8.3.0|x|-|-|-|x|-| diff --git a/scripts/available_software/available_software.py b/scripts/available_software/available_software.py index f04744dcd5fa..9011f8aec6dc 100644 --- a/scripts/available_software/available_software.py +++ b/scripts/available_software/available_software.py @@ -59,19 +59,29 @@ def main(): ) path_data_dir = os.path.join(root_dir, "mkdocs/docs/HPC/only/gent/available_software/data") - # Generate the JSON overviews and detail markdown pages. + # Generate the JSON overviews if args.eessi: - modules = modules_eesi() + modules = modules_eessi() else: - modules = modules_ugent() + modules, paths = modules_ugent() + print(paths) print(modules) print("Generate JSON overview... ", end="", flush=True) generate_json_overview(modules, path_data_dir) print("Done!") + + # Generate the JSON detail + json_data = generate_json_detailed_data(modules) + if args.eessi: + json_data = json_data + else: + json_data = get_extra_info_ugent(json_data, paths) print("Generate JSON detailed... ", end="", flush=True) - json_path = generate_json_detailed(modules, path_data_dir) + json_path = generate_json_detailed(json_data, path_data_dir) print("Done!") + + # Generate detail markdown pages print("Generate detailed pages... ", end="", flush=True) generate_detail_pages(json_path, os.path.join(root_dir, "mkdocs/docs/HPC/only/gent/available_software/detail")) print("Done!") @@ -168,6 +178,35 @@ def module_whatis(name: str) -> dict: return whatis +def module_info(info: str) -> dict: + """ + Function to parse through lua file. + + @param info: String with the contents of the lua file. + """ + whatis = {} + data = np.array(info.split("\n")) + # index of start description to handle multi lined description + i = np.flatnonzero(np.char.startswith(data, "whatis([==[Description"))[0] + if np.char.endswith(data[i], "]==])"): + content = re.sub(pattern=r'whatis\(\[==\[(.*)\]==\]\)', repl='\\1', string=data[i]).strip('"') + else: + description = re.sub(pattern=r'whatis\(\[==\[(.*)', repl='\\1', string=data[i]).strip('"') + while not np.char.endswith(data[i], "]==])"): + i += 1 + description += data[i] + content = re.sub(pattern=r'(.*)\]==\]\)', repl='\\1', string=description).strip('"') + key, value = tuple(content.split(":", maxsplit=1)) + whatis[key.strip()] = value.strip() + + for line in data[np.char.startswith(data, "whatis")]: + if not np.char.startswith(line, "whatis([==[Description"): + content = re.sub(pattern=r'whatis\(\[==\[(.*)\]==\]\)', repl='\\1', string=line).strip('"') + key, value = tuple(content.split(":", maxsplit=1)) + whatis[key.strip()] = value.strip() + return whatis + + # -------------------------------------------------------------------------------------------------------- # Fetch data EESSI # -------------------------------------------------------------------------------------------------------- @@ -199,7 +238,7 @@ def clusters_eessi() -> np.ndarray: return clusters -def modules_eesi() -> dict: +def modules_eessi() -> dict: """ Returns names of all software module that are installed on EESSI. They are grouped by cluster. @@ -250,6 +289,15 @@ def filter_fn_gent_modules(data: np.ndarray) -> np.ndarray: ] +def filter_fn_gent_software_path(data: np.ndarray) -> np.ndarray: + """ + Filter function for the software path of the cluster + @param data: Output + @return: Filtered output + """ + return data[np.char.endswith(data, "/modules/all:")] + + def clusters_ugent() -> np.ndarray: """ Returns all the cluster names of the HPC at UGent. @@ -259,6 +307,45 @@ def clusters_ugent() -> np.ndarray: return module_avail(name="cluster/", filter_fn=filter_fn_gent_cluster) +def get_extra_info_ugent(json_data, paths) -> dict: + """ + add a list of extentions to all modules with extensions + @return: Dictionary with all the modules and their site_packages + """ + modules = json_data['software'] + for software in modules: + for mod in modules[software]['versions']: + cluster = modules[software]['versions'][mod]['clusters'][0] + if software == "Java": + # Java has a strange naming sceme which causes probplems + continue + if mod in ["imkl/2020.4.304-NVHPC-21.2"]: + base_path = "/apps/gent/RHEL8/cascadelake-volta-ib/modules/all/" + elif mod in ['OpenFold/1.0.1-foss-2022a-CUDA-11.7.0', + 'OpenMM/7.7.0-foss-2022a-CUDA-11.7.0', + 'PyTorch-Lightning/1.7.7-foss-2022a-CUDA-11.7.0', + 'PyTorch/1.12.1-foss-2022a-CUDA-11.7.0', + 'Triton/1.1.1-foss-2022a-CUDA-11.7.0']: + base_path = "/apps/gent/RHEL8/cascadelake-ampere-ib/modules/all/" + elif cluster == "donphan": + base_path = "/apps/gent/RHEL8/cascadelake-ib/modules/all/" + elif cluster == "joltik": + base_path = "/apps/gent/RHEL8/cascadelake-volta-ib/modules/all/" + else: + base_path = paths[cluster][0][:-1] + "/" + path = base_path + mod + ".lua" + file = open(path, "r") + info = file.read() + if info != "": + whatis = module_info(info) + json_data['software'][software]['description'] = whatis['Description'] + if "Homepage" in whatis.keys(): + json_data['software'][software]['homepage'] = whatis['Homepage'] + if "Extensions" in whatis.keys(): + json_data["software"][software]["versions"][mod]["extensions"] = whatis['Extensions'] + return json_data + + def modules_ugent() -> dict: """ Returns names of all software module that are installed on the HPC on UGent. @@ -267,15 +354,17 @@ def modules_ugent() -> dict: """ print("Start collecting modules:") data = {} + mapping = {} for cluster in clusters_ugent(): print(f"\t Collecting available modules for {cluster}... ", end="", flush=True) module_swap(cluster) cluster_name = cluster.split("/", maxsplit=1)[1] + mapping[cluster_name] = module_avail(filter_fn=filter_fn_gent_software_path) data[cluster_name] = module_avail(filter_fn=filter_fn_gent_modules) print(f"found {len(data[cluster_name])} modules!") print("All data collected!\n") - return data + return data, mapping # -------------------------------------------------------------------------------------------------------- @@ -343,7 +432,7 @@ def generate_software_table_data(software_data: dict, clusters: list) -> list: row = [module_name] for cluster in clusters: - row += ("x" if cluster in available else "-") + row += ("x" if cluster in available["clusters"] else "-") table_data += row return table_data @@ -370,6 +459,13 @@ def generate_software_detail_page( filename = f"{path}/{software_name}.md" md_file = MdUtils(file_name=filename, title=f"{software_name}") + if 'description' in software_data.keys(): + description = software_data['description'] + md_file.new_paragraph(f"{description}") + if 'homepage' in software_data.keys(): + homepage = software_data['homepage'] + md_file.new_paragraph(f"{homepage}") + md_file.new_header(level=1, title="Available modules") md_file.new_paragraph(f"The overview below shows which {software_name} installations are available per HPC-UGent " @@ -386,6 +482,13 @@ def generate_software_detail_page( text=generate_software_table_data(sorted_versions, clusters) ) + for version, details in list(sorted_versions.items())[::-1]: + if 'extensions' in details: + md_file.new_paragraph(f"### {version}") + md_file.new_paragraph("This is a list of extensions included in the module:") + packages = details['extensions'] + md_file.new_paragraph(f"{packages}") + md_file.create_md_file() # Remove the TOC @@ -570,20 +673,20 @@ def generate_json_detailed_data(modules: dict) -> dict: # If the version is not yet present, add it. if mod not in json_data["software"][software]["versions"]: - json_data["software"][software]["versions"][mod] = [] + json_data["software"][software]["versions"][mod] = {'clusters': []} # If the cluster is not yet present, add it. if cluster not in json_data["software"][software]["clusters"]: json_data["software"][software]["clusters"].append(cluster) # If the cluster is not yet present, add it. - if cluster not in json_data["software"][software]["versions"][mod]: - json_data["software"][software]["versions"][mod].append(cluster) + if cluster not in json_data["software"][software]["versions"][mod]["clusters"]: + json_data["software"][software]["versions"][mod]["clusters"].append(cluster) return json_data -def generate_json_detailed(modules: dict, path_data_dir: str) -> str: +def generate_json_detailed(json_data: dict, path_data_dir: str) -> str: """ Generate the detailed JSON. @@ -591,7 +694,6 @@ def generate_json_detailed(modules: dict, path_data_dir: str) -> str: @param path_data_dir: Path to the directory where the JSON will be placed. @return: Absolute path to the json file. """ - json_data = generate_json_detailed_data(modules) filepath = os.path.join(path_data_dir, "json_data_detail.json") with open(filepath, 'w') as outfile: json.dump(json_data, outfile) diff --git a/scripts/available_software/test.sh b/scripts/available_software/test.sh index 85fd00b1a50f..33e8376a8153 100755 --- a/scripts/available_software/test.sh +++ b/scripts/available_software/test.sh @@ -1,3 +1,3 @@ #!/bin/bash -PYTHONPATH=$PWD:$PYTHONPATH pytest -v -s \ No newline at end of file +PYTHONPATH=$PWD:$PYTHONPATH pytest -v -s diff --git a/scripts/available_software/tests/data/test_json_simple_sol_detail.json b/scripts/available_software/tests/data/test_json_simple_sol_detail.json index 64bc33891323..8ff9aa66455b 100644 --- a/scripts/available_software/tests/data/test_json_simple_sol_detail.json +++ b/scripts/available_software/tests/data/test_json_simple_sol_detail.json @@ -1 +1 @@ -{"clusters": ["dialga", "pikachu"], "software": {"cfd": {"clusters": ["dialga", "pikachu"], "versions": {"cfd/1.0": ["dialga", "pikachu"], "cfd/2.0": ["dialga", "pikachu"], "cfd/24": ["dialga", "pikachu"], "cfd/5.0": ["dialga", "pikachu"], "cfd/2.0afqsdf": ["dialga", "pikachu"], "cfd/3.0": ["pikachu"]}}, "Markov": {"clusters": ["dialga"], "versions": {"Markov/hidden-1.0.5": ["dialga"], "Markov/hidden-1.0.10": ["dialga"]}}, "science": {"clusters": ["dialga", "pikachu"], "versions": {"science/5.3.0": ["dialga", "pikachu"], "science/7.2.0": ["dialga", "pikachu"]}}, "llm": {"clusters": ["pikachu"], "versions": {"llm/20230627": ["pikachu"]}}}, "time_generated": "Thu, 31 Aug 2023 at 14:00:22 CEST"} \ No newline at end of file +{"clusters": ["dialga", "pikachu"], "software": {"cfd": {"clusters": ["dialga", "pikachu"], "versions": {"cfd/1.0": {"clusters": ["dialga", "pikachu"]}, "cfd/2.0": {"clusters": ["dialga", "pikachu"]}, "cfd/24": {"clusters": ["dialga", "pikachu"]}, "cfd/5.0": {"clusters": ["dialga", "pikachu"]}, "cfd/2.0afqsdf": {"clusters": ["dialga", "pikachu"]}, "cfd/3.0": {"clusters": ["pikachu"]}}}, "Markov": {"clusters": ["dialga"], "versions": {"Markov/hidden-1.0.5": {"clusters": ["dialga"]}, "Markov/hidden-1.0.10": {"clusters": ["dialga"]}}}, "science": {"clusters": ["dialga", "pikachu"], "versions": {"science/5.3.0": {"clusters": ["dialga", "pikachu"]}, "science/7.2.0": {"clusters": ["dialga", "pikachu"]}}}, "llm": {"clusters": ["pikachu"], "versions": {"llm/20230627": {"clusters": ["pikachu"]}}}}, "time_generated": "Thu, 31 Aug 2023 at 14:00:22 CEST"} diff --git a/scripts/available_software/tests/test_data.py b/scripts/available_software/tests/test_data.py index 57a1b3b5073f..ff358c010fad 100644 --- a/scripts/available_software/tests/test_data.py +++ b/scripts/available_software/tests/test_data.py @@ -20,7 +20,7 @@ def setup_class(cls): # --------------------------- def test_data_ugent(self): - sol = modules_ugent() + sol = modules_ugent()[0] assert len(sol) == 2 assert len(sol["dialga"]) == 13 assert len(sol["pikachu"]) == 15 diff --git a/scripts/available_software/tests/test_json.py b/scripts/available_software/tests/test_json.py index dd84b92856ce..80df5c2cc401 100644 --- a/scripts/available_software/tests/test_json.py +++ b/scripts/available_software/tests/test_json.py @@ -1,7 +1,8 @@ from available_software import (generate_json_overview_data, generate_json_overview, modules_ugent, - generate_json_detailed) + generate_json_detailed, + generate_json_detailed_data) import os import json @@ -32,7 +33,7 @@ def teardown_class(cls): # --------------------------- def test_json_generate_simple(self): - modules = modules_ugent() + modules = modules_ugent()[0] json_data = generate_json_overview_data(modules) assert len(json_data.keys()) == 3 assert list(json_data["clusters"]) == ["dialga", "pikachu"] @@ -44,7 +45,7 @@ def test_json_generate_simple(self): } def test_json_simple(self): - modules = modules_ugent() + modules = modules_ugent()[0] json_path = generate_json_overview(modules, ".") with open(json_path) as json_data: data_generated = json.load(json_data) @@ -57,8 +58,9 @@ def test_json_simple(self): assert data_generated["clusters"] == data_solution["clusters"] def test_json_detail_simple(self): - modules = modules_ugent() - json_path = generate_json_detailed(modules, ".") + modules = modules_ugent()[0] + json_data = generate_json_detailed_data(modules) + json_path = generate_json_detailed(json_data, ".") assert os.path.exists("json_data_detail.json") with open(json_path) as json_data: diff --git a/scripts/available_software/tests/test_md.py b/scripts/available_software/tests/test_md.py index d4b757a3fddc..7d45f68ddb67 100644 --- a/scripts/available_software/tests/test_md.py +++ b/scripts/available_software/tests/test_md.py @@ -28,7 +28,7 @@ def teardown_class(cls): # --------------------------- def test_table_generate_simple(self): - simple_data = get_unique_software_names(modules_ugent()) + simple_data = get_unique_software_names(modules_ugent()[0]) table_data, col, row = generate_table_data(simple_data) assert col == 3 assert row == 5 @@ -36,7 +36,7 @@ def test_table_generate_simple(self): def test_md_simple(self): md_file = MdUtils(file_name='test_simple', title='Overview Modules') - simple_data = get_unique_software_names(modules_ugent()) + simple_data = get_unique_software_names(modules_ugent()[0]) generate_module_table(simple_data, md_file) md_file.create_md_file() assert os.path.exists("test_simple.md")