Further tweaks to the configuration.

Author: rhliang

.github/workflows/python.yml .github/workflows/test.yml.github/workflows/python.yml renamed to .github/workflows/test.yml

@@ -22,26 +22,26 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest]
-        python-version: ["3.10", "3.11", "3.12"]
+        python-version: ["3.10", "3.11", "3.12", "3.x"]
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v4
         with:
           python-version: ${{ matrix.python-version }}
 
       - name: Install dependencies
-        run:
-          - apt update && apt install yamllint
-          - pip install uv
+        run: |
+          apt update && apt install yamllint
+          pip install uv
 
       - name: Check code
-        run:
-          - yamllint .
-          - uv run mypy --check .
-          - uv run ruff check .
+        run: |
+          yamllint .
+          uv run mypy --check .
+          uv run ruff check .
 
       - name: Run tests
         run: uv run pytest --junitxml=pytest.xml

pyproject.toml

@@ -76,14 +76,23 @@ path = "src/easyhla/__about__.py"
 
 [tool.hatch.build]
 include = [
-  "src/easyhla/*.py",
-  "src/easyhla/default_data/*.csv",
-  "src/easyhla/default_data/hla_nuc.fasta.mtime",
+  "src/easyhla/__about__.py",
+  "src/easyhla/__init__.py",
+  "src/easyhla/__main__.py",
+  "src/easyhla/easyhla.py",
+  "src/easyhla/interpret_from_json_lib.py",
+  "src/easyhla/interpret_from_json.py",
+  "src/easyhla/models.py",
+  "src/easyhla/py.typed",
+  "src/easyhla/update_alleles.py",
+  "src/easyhla/update_frequency_file_lib.py",
+  "src/easyhla/update_frequency_file.py",
+  "src/easyhla/utils.py",
+  "src/easyhla/default_data/hla_standards.yaml",
+  "src/easyhla/default_data/hla_frequencies.csv",
 ]
 exclude = [
-  "tools",
-  "tests/output",
-  "tests/input",
+  "tests",
 ]
 skip-excluded-dirs = true
 directory = "output"