Prefix exclusion (#50)

* Set theme jekyll-theme-slate

* Create index.md

Initialise GH pages

* Exclude bald:isPrefixedBy from output graph

Author: simonoakesepimorphics

binary-array-ld-cli/src/test/kotlin/net/bald/BinaryArrayConvertCliTest.kt

@@ -176,7 +176,6 @@ class BinaryArrayConvertCliTest {
                 statement(BALD.contains, model.createResource("http://test.binary-array-ld.net/example/var1")) {
                     statement(RDF.type, BALD.Resource)
                 }
-                statement(BALD.isPrefixedBy, createPlainLiteral("prefix_list"))
             }
         }
     }
@@ -276,7 +275,6 @@ class BinaryArrayConvertCliTest {
                 statement(BALD.contains, model.createResource("http://test.binary-array-ld.net/example/var1")) {
                     statement(RDF.type, BALD.Resource)
                 }
-                statement(BALD.isPrefixedBy, createPlainLiteral("prefix_list"))
             }
         }
     }
@@ -319,7 +317,6 @@ class BinaryArrayConvertCliTest {
                 statement(BALD.contains, model.createResource("http://test.binary-array-ld.net/example/var1")) {
                     statement(RDF.type, BALD.Resource)
                 }
-                statement(BALD.isPrefixedBy, createPlainLiteral("prefix_list"))
             }
         }
     }
@@ -364,7 +361,6 @@ class BinaryArrayConvertCliTest {
                 statement(BALD.contains, model.createResource("http://test.binary-array-ld.net/example/var1")) {
                     statement(RDF.type, BALD.Resource)
                 }
-                statement(BALD.isPrefixedBy, createPlainLiteral("prefix_list"))
             }
         }
     }
@@ -435,7 +431,6 @@ class BinaryArrayConvertCliTest {
                 statement(BALD.contains, createResource("http://test.binary-array-ld.net/example/var0")) {
                     statement(RDF.type, BALD.Resource)
                 }
-                statement(BALD.isPrefixedBy, createPlainLiteral("prefix_list"))
             }
         }
     }
@@ -579,7 +574,6 @@ class BinaryArrayConvertCliTest {
                         list(15)
                     }
                 }
-                statement(BALD.isPrefixedBy, createPlainLiteral("prefix_list"))
             }
         }
     }

binary-array-ld-netcdf/src/main/kotlin/net/bald/netcdf/NetCdfContainer.kt

@@ -40,7 +40,9 @@ abstract class NetCdfContainer(
     }
 
     override fun subContainers(): Sequence<Container> {
-        return group.groups.asSequence().filter(::acceptGroup).map(::subContainer)
+        return group.groups.asSequence()
+            .filter(::acceptGroup)
+            .map(::subContainer)
     }
 
     private fun subContainer(group: Group): NetCdfContainer {
@@ -55,8 +57,15 @@ abstract class NetCdfContainer(
         return true
     }
 
+    open fun acceptAttr(attr: Attribute): Boolean {
+        return true
+    }
+
     override fun attributes(): Sequence<Attribute> {
-        return group.attributes().let(::source).attributes()
+        return group.attributes()
+            .let(::source)
+            .attributes()
+            .filter(::acceptAttr)
     }
 
     fun subContainer(name: String): NetCdfContainer? {

binary-array-ld-netcdf/src/main/kotlin/net/bald/netcdf/NetCdfRootContainer.kt

@@ -1,9 +1,11 @@
 package net.bald.netcdf
 
+import net.bald.Attribute
 import ucar.nc2.Group
 import ucar.nc2.Variable
 import net.bald.Container
 import net.bald.alias.AliasDefinition
+import net.bald.vocab.BALD
 
 /**
  * NetCDF implementation of [Container] based on the root group.
@@ -31,6 +33,10 @@ class NetCdfRootContainer(
         return prefixSrc != v.shortName
     }
 
+    override fun acceptAttr(attr: Attribute): Boolean {
+        return BALD.isPrefixedBy.hasURI(attr.uri).not()
+    }
+
     override fun childUri(name: String): String {
         return uri + name
     }

binary-array-ld-netcdf/src/test/kotlin/net/bald/netcdf/NetCdfBinaryArrayTest.kt

@@ -222,7 +222,6 @@ class NetCdfBinaryArrayTest {
         val ctx = ModelContext.create(prefix)
         val ba = fromCdl("/netcdf/attributes.cdl", "http://test.binary-array-ld.net/attributes.nc", ctx)
         ContainerVerifier(ba.root).attributes {
-            attribute(BALD.isPrefixedBy.uri, createPlainLiteral("prefix_list"))
             attribute(SKOS.prefLabel.uri, createPlainLiteral("Attributes metadata example"))
             attribute(DCTerms.publisher.uri, createResource("${BALD.prefix}Organisation"))
             attribute("http://test.binary-array-ld.net/attributes.nc/date", createPlainLiteral("2020-10-29"))
@@ -273,7 +272,6 @@ class NetCdfBinaryArrayTest {
         val ba = fromCdl("/netcdf/alias.cdl", "http://test.binary-array-ld.net/alias.nc", ctx, alias)
         ContainerVerifier(ba.root).apply {
             attributes {
-                attribute(BALD.isPrefixedBy.uri, createPlainLiteral("prefix_list"))
                 attribute(SKOS.prefLabel.uri, createPlainLiteral("Alias metadata example"))
                 attribute(DCTerms.publisher.uri, createResource("${BALD.prefix}Organisation"))
                 attribute("http://test.binary-array-ld.net/alias.nc/date", createPlainLiteral("2020-10-29"))
@@ -309,7 +307,6 @@ class NetCdfBinaryArrayTest {
 
         ContainerVerifier(ba.root).apply {
             attributes {
-                attribute(BALD.isPrefixedBy.uri, createPlainLiteral("prefix_list"))
                 attribute(SKOS.prefLabel.uri, createPlainLiteral("Variable reference metadata example"))
                 attribute(TestVocab.rootVar.uri, createResource("http://test.binary-array-ld.net/var-ref.nc/var0"))
                 attribute(TestVocab.unorderedVar.uri) {